Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0141340 | sp|Q8S1Z1|UTP11_ORYSJ | 64.192 | 229 | 68 | 1 | 1 | 215 | 1 | 229 | 1.29e-99 | 291 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0141340 | B7FKL3 | 91.266 | 229 | 6 | 1 | 1 | 215 | 1 | 229 | 3.48e-146 | 415 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0025730 | Msa0141340 | 0.848109 | 7.555190e-60 | -8.615850e-47 |
Msa0032260 | Msa0141340 | 0.835784 | 1.371236e-56 | -8.615850e-47 |
Msa0040690 | Msa0141340 | 0.807648 | 4.561002e-50 | -8.615850e-47 |
Msa0043660 | Msa0141340 | 0.810422 | 1.162011e-50 | -8.615850e-47 |
Msa0045490 | Msa0141340 | 0.811895 | 5.568278e-51 | -8.615850e-47 |
Msa0047160 | Msa0141340 | 0.838520 | 2.738989e-57 | -8.615850e-47 |
Msa0048180 | Msa0141340 | 0.808222 | 3.443644e-50 | -8.615850e-47 |
Msa0055150 | Msa0141340 | 0.807358 | 5.256076e-50 | -8.615850e-47 |
Msa0057140 | Msa0141340 | 0.807493 | 4.919774e-50 | -8.615850e-47 |
Msa0076000 | Msa0141340 | 0.825055 | 5.774339e-54 | -8.615850e-47 |
Msa0086180 | Msa0141340 | 0.813563 | 2.403132e-51 | -8.615850e-47 |
Msa0094470 | Msa0141340 | 0.838147 | 3.418320e-57 | -8.615850e-47 |
Msa0094920 | Msa0141340 | 0.817472 | 3.239720e-52 | -8.615850e-47 |
Msa0097990 | Msa0141340 | 0.813856 | 2.071418e-51 | -8.615850e-47 |
Msa0127310 | Msa0141340 | 0.840418 | 8.800895e-58 | -8.615850e-47 |
Msa0137550 | Msa0141340 | 0.804759 | 1.851132e-49 | -8.615850e-47 |
Msa0141340 | Msa0142980 | 0.803926 | 2.761299e-49 | -8.615850e-47 |
Msa0141340 | Msa0146770 | 0.811050 | 8.497802e-51 | -8.615850e-47 |
Msa0141340 | Msa0165950 | 0.811518 | 6.725476e-51 | -8.615850e-47 |
Msa0141340 | Msa0182030 | 0.819663 | 1.031732e-52 | -8.615850e-47 |
Msa0141340 | Msa0186890 | 0.801788 | 7.633808e-49 | -8.615850e-47 |
Msa0141340 | Msa0187930 | 0.818552 | 1.847359e-52 | -8.615850e-47 |
Msa0141340 | Msa0188680 | -0.803268 | 3.779590e-49 | -8.615850e-47 |
Msa0141340 | Msa0189300 | 0.831497 | 1.614754e-55 | -8.615850e-47 |
Msa0141340 | Msa0194540 | 0.827236 | 1.749020e-54 | -8.615850e-47 |
Msa0141340 | Msa0214710 | 0.801880 | 7.306991e-49 | -8.615850e-47 |
Msa0141340 | Msa0216240 | 0.813631 | 2.320814e-51 | -8.615850e-47 |
Msa0141340 | Msa0220720 | 0.803741 | 3.015779e-49 | -8.615850e-47 |
Msa0141340 | Msa0224030 | 0.827072 | 1.913921e-54 | -8.615850e-47 |
Msa0141340 | Msa0226470 | 0.831774 | 1.379807e-55 | -8.615850e-47 |
Msa0141340 | Msa0227400 | 0.844887 | 5.721211e-59 | -8.615850e-47 |
Msa0141340 | Msa0231660 | 0.832275 | 1.037515e-55 | -8.615850e-47 |
Msa0141340 | Msa0231880 | 0.821632 | 3.641361e-53 | -8.615850e-47 |
Msa0141340 | Msa0244780 | 0.814385 | 1.582521e-51 | -8.615850e-47 |
Msa0141340 | Msa0260210 | 0.816094 | 6.602747e-52 | -8.615850e-47 |
Msa0141340 | Msa0262310 | 0.835046 | 2.107989e-56 | -8.615850e-47 |
Msa0141340 | Msa0264930 | 0.809063 | 2.276641e-50 | -8.615850e-47 |
Msa0141340 | Msa0268130 | 0.819179 | 1.330110e-52 | -8.615850e-47 |
Msa0141340 | Msa0270220 | -0.816992 | 4.155130e-52 | -8.615850e-47 |
Msa0141340 | Msa0271530 | 0.832218 | 1.071585e-55 | -8.615850e-47 |
Msa0141340 | Msa0278790 | 0.805502 | 1.294418e-49 | -8.615850e-47 |
Msa0141340 | Msa0280430 | 0.805014 | 1.637602e-49 | -8.615850e-47 |
Msa0141340 | Msa0298990 | 0.813499 | 2.482273e-51 | -8.615850e-47 |
Msa0141340 | Msa0304290 | 0.814084 | 1.844419e-51 | -8.615850e-47 |
Msa0141340 | Msa0304330 | 0.819715 | 1.003945e-52 | -8.615850e-47 |
Msa0141340 | Msa0305890 | 0.810404 | 1.172307e-50 | -8.615850e-47 |
Msa0141340 | Msa0307830 | -0.808938 | 2.421706e-50 | -8.615850e-47 |
Msa0141340 | Msa0309750 | 0.805060 | 1.601708e-49 | -8.615850e-47 |
Msa0141340 | Msa0337650 | 0.849231 | 3.693625e-60 | -8.615850e-47 |
Msa0141340 | Msa0340810 | 0.809361 | 1.965399e-50 | -8.615850e-47 |
Msa0141340 | Msa0360990 | 0.808188 | 3.501783e-50 | -8.615850e-47 |
Msa0141340 | Msa0372670 | 0.804532 | 2.064972e-49 | -8.615850e-47 |
Msa0141340 | Msa0385580 | 0.836418 | 9.468829e-57 | -8.615850e-47 |
Msa0141340 | Msa0419520 | 0.828504 | 8.666964e-55 | -8.615850e-47 |
Msa0141340 | Msa0453230 | 0.813915 | 2.009581e-51 | -8.615850e-47 |
Msa0141340 | Msa0465550 | 0.812038 | 5.184571e-51 | -8.615850e-47 |
Msa0141340 | Msa0484840 | 0.809292 | 2.033800e-50 | -8.615850e-47 |
Msa0141340 | Msa0514180 | 0.802100 | 6.585931e-49 | -8.615850e-47 |
Msa0141340 | Msa0526540 | 0.804755 | 1.854798e-49 | -8.615850e-47 |
Msa0141340 | Msa0541860 | 0.803020 | 4.253977e-49 | -8.615850e-47 |
Msa0141340 | Msa0542090 | 0.810350 | 1.203909e-50 | -8.615850e-47 |
Msa0141340 | Msa0542130 | 0.813466 | 2.523056e-51 | -8.615850e-47 |
Msa0141340 | Msa0545060 | 0.814087 | 1.841973e-51 | -8.615850e-47 |
Msa0141340 | Msa0546360 | 0.841052 | 6.002570e-58 | -8.615850e-47 |
Msa0141340 | Msa0547360 | 0.819418 | 1.173720e-52 | -8.615850e-47 |
Msa0141340 | Msa0554290 | 0.807227 | 5.602258e-50 | -8.615850e-47 |
Msa0141340 | Msa0556790 | 0.828459 | 8.885099e-55 | -8.615850e-47 |
Msa0141340 | Msa0558810 | 0.832485 | 9.204028e-56 | -8.615850e-47 |
Msa0141340 | Msa0558840 | 0.815592 | 8.544301e-52 | -8.615850e-47 |
Msa0141340 | Msa0568820 | 0.806522 | 7.896869e-50 | -8.615850e-47 |
Msa0141340 | Msa0571920 | 0.801590 | 8.382332e-49 | -8.615850e-47 |
Msa0141340 | Msa0600600 | 0.835114 | 2.025973e-56 | -8.615850e-47 |
Msa0141340 | Msa0603670 | 0.801998 | 6.911774e-49 | -8.615850e-47 |
Msa0141340 | Msa0605000 | 0.815910 | 7.254968e-52 | -8.615850e-47 |
Msa0141340 | Msa0610390 | 0.800950 | 1.133237e-48 | -8.615850e-47 |
Msa0141340 | Msa0615440 | 0.823516 | 1.328341e-53 | -8.615850e-47 |
Msa0141340 | Msa0619070 | 0.813677 | 2.268230e-51 | -8.615850e-47 |
Msa0141340 | Msa0641140 | 0.821443 | 4.027241e-53 | -8.615850e-47 |
Msa0141340 | Msa0643220 | 0.815041 | 1.132491e-51 | -8.615850e-47 |
Msa0141340 | Msa0650920 | 0.804007 | 2.655317e-49 | -8.615850e-47 |
Msa0141340 | Msa0654870 | 0.800037 | 1.738860e-48 | -8.615850e-47 |
Msa0141340 | Msa0656580 | 0.826761 | 2.271235e-54 | -8.615850e-47 |
Msa0141340 | Msa0663900 | 0.814025 | 1.900522e-51 | -8.615850e-47 |
Msa0141340 | Msa0679680 | 0.819390 | 1.190785e-52 | -8.615850e-47 |
Msa0141340 | Msa0682900 | 0.817330 | 3.487966e-52 | -8.615850e-47 |
Msa0141340 | Msa0685140 | 0.811916 | 5.509842e-51 | -8.615850e-47 |
Msa0141340 | Msa0689260 | 0.837849 | 4.076764e-57 | -8.615850e-47 |
Msa0141340 | Msa0691900 | 0.815732 | 7.952767e-52 | -8.615850e-47 |
Msa0141340 | Msa0694840 | 0.820028 | 8.517261e-53 | -8.615850e-47 |
Msa0141340 | Msa0698060 | 0.897881 | 9.137680e-77 | -8.615850e-47 |
Msa0141340 | Msa0698490 | 0.823728 | 1.184782e-53 | -8.615850e-47 |
Msa0141340 | Msa0698660 | 0.826735 | 2.304599e-54 | -8.615850e-47 |
Msa0141340 | Msa0703230 | 0.801696 | 7.972617e-49 | -8.615850e-47 |
Msa0141340 | Msa0708610 | 0.819672 | 1.026988e-52 | -8.615850e-47 |
Msa0141340 | Msa0709500 | 0.825764 | 3.922940e-54 | -8.615850e-47 |
Msa0141340 | Msa0711780 | 0.831175 | 1.937132e-55 | -8.615850e-47 |
Msa0141340 | Msa0715650 | 0.819999 | 8.647681e-53 | -8.615850e-47 |
Msa0141340 | Msa0715700 | 0.803351 | 3.633782e-49 | -8.615850e-47 |
Msa0141340 | Msa0719420 | 0.803901 | 2.794032e-49 | -8.615850e-47 |
Msa0141340 | Msa0750880 | 0.819382 | 1.195966e-52 | -8.615850e-47 |
Msa0141340 | Msa0750920 | 0.804855 | 1.768125e-49 | -8.615850e-47 |
Msa0141340 | Msa0753140 | 0.821285 | 4.380526e-53 | -8.615850e-47 |
Msa0141340 | Msa0761940 | 0.803245 | 3.821743e-49 | -8.615850e-47 |
Msa0141340 | Msa0770200 | 0.802859 | 4.593848e-49 | -8.615850e-47 |
Msa0141340 | Msa0772480 | 0.809409 | 1.919922e-50 | -8.615850e-47 |
Msa0141340 | Msa0783790 | 0.802242 | 6.157844e-49 | -8.615850e-47 |
Msa0141340 | Msa0784380 | 0.800164 | 1.638561e-48 | -8.615850e-47 |
Msa0141340 | Msa0789680 | 0.807263 | 5.506379e-50 | -8.615850e-47 |
Msa0141340 | Msa0790390 | -0.807229 | 5.597849e-50 | -8.615850e-47 |
Msa0141340 | Msa0790660 | -0.813822 | 2.106792e-51 | -8.615850e-47 |
Msa0141340 | Msa0790850 | 0.829164 | 6.000851e-55 | -8.615850e-47 |
Msa0141340 | Msa0794670 | 0.819421 | 1.171547e-52 | -8.615850e-47 |
Msa0141340 | Msa0796530 | 0.805589 | 1.240987e-49 | -8.615850e-47 |
Msa0141340 | Msa0798440 | 0.818402 | 1.997623e-52 | -8.615850e-47 |
Msa0141340 | Msa0802410 | 0.838201 | 3.310145e-57 | -8.615850e-47 |
Msa0141340 | Msa0804230 | 0.802724 | 4.896841e-49 | -8.615850e-47 |
Msa0141340 | Msa0819060 | 0.837339 | 5.509956e-57 | -8.615850e-47 |
Msa0141340 | Msa0830540 | 0.852264 | 5.174975e-61 | -8.615850e-47 |
Msa0141340 | Msa0844230 | 0.808273 | 3.358050e-50 | -8.615850e-47 |
Msa0141340 | Msa0850710 | 0.833356 | 5.588878e-56 | -8.615850e-47 |
Msa0141340 | Msa0850960 | 0.817257 | 3.622332e-52 | -8.615850e-47 |
Msa0141340 | Msa0876200 | 0.818290 | 2.117342e-52 | -8.615850e-47 |
Msa0141340 | Msa0902760 | 0.812777 | 3.574381e-51 | -8.615850e-47 |
Msa0141340 | Msa0945440 | 0.810779 | 9.729074e-51 | -8.615850e-47 |
Msa0141340 | Msa0968590 | 0.810959 | 8.891007e-51 | -8.615850e-47 |
Msa0141340 | Msa0970030 | 0.810655 | 1.034456e-50 | -8.615850e-47 |
Msa0141340 | Msa0989540 | 0.853633 | 2.100243e-61 | -8.615850e-47 |
Msa0141340 | Msa1006840 | 0.833426 | 5.368378e-56 | -8.615850e-47 |
Msa0141340 | Msa1013400 | 0.818007 | 2.453922e-52 | -8.615850e-47 |
Msa0141340 | Msa1014420 | 0.853417 | 2.423010e-61 | -8.615850e-47 |
Msa0141340 | Msa1019240 | 0.816869 | 4.427463e-52 | -8.615850e-47 |
Msa0141340 | Msa1019260 | 0.805467 | 1.316010e-49 | -8.615850e-47 |
Msa0141340 | Msa1041520 | 0.818732 | 1.680900e-52 | -8.615850e-47 |
Msa0141340 | Msa1055410 | 0.836816 | 7.495577e-57 | -8.615850e-47 |
Msa0141340 | Msa1073900 | 0.801890 | 7.274357e-49 | -8.615850e-47 |
Msa0141340 | Msa1081150 | 0.818509 | 1.888756e-52 | -8.615850e-47 |
Msa0141340 | Msa1081560 | 0.824768 | 6.749778e-54 | -8.615850e-47 |
Msa0141340 | Msa1084470 | 0.818081 | 2.360959e-52 | -8.615850e-47 |
Msa0141340 | Msa1089840 | 0.805601 | 1.233827e-49 | -8.615850e-47 |
Msa0141340 | Msa1093330 | 0.809304 | 2.021626e-50 | -8.615850e-47 |
Msa0141340 | Msa1093530 | 0.810935 | 9.000404e-51 | -8.615850e-47 |
Msa0141340 | Msa1104140 | 0.832682 | 8.222924e-56 | -8.615850e-47 |
Msa0141340 | Msa1125550 | 0.800912 | 1.153637e-48 | -8.615850e-47 |
Msa0141340 | Msa1125760 | 0.805804 | 1.118397e-49 | -8.615850e-47 |
Msa0141340 | Msa1127130 | 0.829949 | 3.865147e-55 | -8.615850e-47 |
Msa0141340 | Msa1133400 | 0.831214 | 1.895479e-55 | -8.615850e-47 |
Msa0141340 | Msa1166410 | 0.819229 | 1.296085e-52 | -8.615850e-47 |
Msa0141340 | Msa1171360 | 0.825743 | 3.969094e-54 | -8.615850e-47 |
Msa0141340 | Msa1174100 | 0.807141 | 5.843516e-50 | -8.615850e-47 |
Msa0141340 | Msa1204250 | 0.805325 | 1.409835e-49 | -8.615850e-47 |
Msa0141340 | Msa1207270 | 0.804459 | 2.138194e-49 | -8.615850e-47 |
Msa0141340 | Msa1209760 | 0.805768 | 1.137905e-49 | -8.615850e-47 |
Msa0141340 | Msa1214890 | 0.801321 | 9.513316e-49 | -8.615850e-47 |
Msa0141340 | Msa1217940 | 0.804158 | 2.470893e-49 | -8.615850e-47 |
Msa0141340 | Msa1218600 | 0.840784 | 7.059422e-58 | -8.615850e-47 |
Msa0141340 | Msa1231240 | 0.801567 | 8.471149e-49 | -8.615850e-47 |
Msa0141340 | Msa1237940 | 0.824115 | 9.615804e-54 | -8.615850e-47 |
Msa0141340 | Msa1254710 | 0.828748 | 7.563922e-55 | -8.615850e-47 |
Msa0141340 | Msa1255040 | -0.809087 | 2.250632e-50 | -8.615850e-47 |
Msa0141340 | Msa1257510 | 0.804109 | 2.529403e-49 | -8.615850e-47 |
Msa0141340 | Msa1265630 | 0.835918 | 1.268584e-56 | -8.615850e-47 |
Msa0141340 | Msa1269300 | 0.805530 | 1.276592e-49 | -8.615850e-47 |
Msa0141340 | Msa1270620 | 0.804607 | 1.991528e-49 | -8.615850e-47 |
Msa0141340 | Msa1311960 | 0.818857 | 1.574975e-52 | -8.615850e-47 |
Msa0141340 | Msa1331910 | 0.803682 | 3.103233e-49 | -8.615850e-47 |
Msa0141340 | Msa1333110 | 0.804867 | 1.757976e-49 | -8.615850e-47 |
Msa0141340 | Msa1341070 | 0.804098 | 2.542874e-49 | -8.615850e-47 |
Msa0141340 | Msa1353060 | 0.821264 | 4.429130e-53 | -8.615850e-47 |
Msa0141340 | Msa1355700 | 0.847549 | 1.077809e-59 | -8.615850e-47 |
Msa0141340 | Msa1356440 | 0.813053 | 3.109319e-51 | -8.615850e-47 |
Msa0141340 | Msa1358250 | 0.841117 | 5.771728e-58 | -8.615850e-47 |
Msa0141340 | Msa1363330 | 0.806888 | 6.610858e-50 | -8.615850e-47 |
Msa0141340 | Msa1365150 | 0.806902 | 6.563571e-50 | -8.615850e-47 |
Msa0141340 | Msa1366600 | 0.802535 | 5.357524e-49 | -8.615850e-47 |
Msa0141340 | Msa1367880 | 0.808289 | 3.331956e-50 | -8.615850e-47 |
Msa0141340 | Msa1374120 | 0.807994 | 3.850905e-50 | -8.615850e-47 |
Msa0141340 | Msa1376200 | 0.807917 | 3.999340e-50 | -8.615850e-47 |
Msa0141340 | Msa1385670 | 0.825948 | 3.547787e-54 | -8.615850e-47 |
Msa0141340 | Msa1386600 | 0.807393 | 5.166354e-50 | -8.615850e-47 |
Msa0141340 | Msa1392780 | 0.815092 | 1.103357e-51 | -8.615850e-47 |
Msa0141340 | Msa1394290 | 0.850431 | 1.705764e-60 | -8.615850e-47 |
Msa0141340 | Msa1397810 | 0.802028 | 6.813620e-49 | -8.615850e-47 |
Msa0141340 | Msa1403580 | -0.820249 | 7.580225e-53 | -8.615850e-47 |
Msa0141340 | Msa1404190 | 0.802401 | 5.710307e-49 | -8.615850e-47 |
Msa0141340 | Msa1427060 | 0.808151 | 3.565978e-50 | -8.615850e-47 |
Msa0141340 | Msa1432700 | 0.815728 | 7.966244e-52 | -8.615850e-47 |
Msa0141340 | Msa1438640 | 0.800111 | 1.680130e-48 | -8.615850e-47 |
Msa0141340 | Msa1439960 | 0.806823 | 6.822902e-50 | -8.615850e-47 |
Msa0141340 | Msa1443290 | -0.805230 | 1.475729e-49 | -8.615850e-47 |
Msa0141340 | Msa1444310 | 0.852313 | 5.011192e-61 | -8.615850e-47 |
Msa0141340 | Msa1448690 | 0.807387 | 5.181292e-50 | -8.615850e-47 |
Msa0141340 | Msa1457920 | 0.835590 | 1.536035e-56 | -8.615850e-47 |
Msa0141340 | Msa1461280 | 0.803718 | 3.048977e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0141340 | MtrunA17_Chr4g0051081 | 91.266 | 229 | 6 | 1 | 1 | 215 | 1 | 229 | 6.69e-150 | 415 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0141340 | AT3G60360.1 | 58.079 | 229 | 81 | 2 | 1 | 215 | 1 | 228 | 1.18e-91 | 268 |
Find 57 sgRNAs with CRISPR-Local
Find 462 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGAGAGACTTGTTTATTT+TGG | 0.187843 | 1_3:-76154029 | Msa0141340:three_prime_UTR |
TAAATTACCTCATACAAAAT+TGG | 0.225866 | 1_3:+76154090 | None:intergenic |
TCATTGTGTTAAATCATAAA+AGG | 0.264423 | 1_3:+76154196 | None:intergenic |
AAAGCTTCAAAGTGAGAAAA+AGG | 0.290672 | 1_3:-76159820 | Msa0141340:intron |
ACGCTCTTTGTGAGCAGGTC+TGG | 0.296864 | 1_3:+76160963 | None:intergenic |
GCACCAAGATTAAAATTATC+AGG | 0.330125 | 1_3:+76161121 | None:intergenic |
ATGTGAAAGAAGACACTTTA+CGG | 0.340011 | 1_3:-76160783 | Msa0141340:CDS |
ATATTCCTGATAATATTAAA+AGG | 0.347552 | 1_3:-76155743 | Msa0141340:intron |
ATTGATGAAGACACAAGATA+TGG | 0.356282 | 1_3:-76159856 | Msa0141340:intron |
ATGATCAATCAAGTGCAAAT+TGG | 0.364827 | 1_3:+76159677 | None:intergenic |
CGCTCTTTGTGAGCAGGTCT+GGG | 0.369189 | 1_3:+76160964 | None:intergenic |
TGTTTCAATCACAGGTACTT+AGG | 0.379172 | 1_3:-76160679 | Msa0141340:intron |
CTGAAACCACGATGTTTAGT+AGG | 0.387112 | 1_3:+76161078 | None:intergenic |
AGGTCTTGGAGGAAGAAATT+CGG | 0.388099 | 1_3:-76160853 | Msa0141340:CDS |
GGTCTTGGAGGAAGAAATTC+GGG | 0.397372 | 1_3:-76160852 | Msa0141340:CDS |
GGCACTGAAGAAGGAGTTGC+AGG | 0.398896 | 1_3:-76154476 | Msa0141340:intron |
TCCTGTCATGCGACGGAAGT+TGG | 0.426643 | 1_3:-76154158 | Msa0141340:three_prime_UTR |
AGAGAAAGTCTACATGGATA+TGG | 0.427839 | 1_3:-76154497 | Msa0141340:CDS |
TGTGAAAGAAGACACTTTAC+GGG | 0.432035 | 1_3:-76160782 | Msa0141340:intron |
TGTATACCGGTCTACCGGTT+GGG | 0.433095 | 1_3:+76154319 | None:intergenic |
CACGGTGATTTCTACGGTGG+AGG | 0.441233 | 1_3:+76161030 | None:intergenic |
GTTTCAATCACAGGTACTTA+GGG | 0.442736 | 1_3:-76160678 | Msa0141340:intron |
ATTTCTACGGTGGAGGGTGG+TGG | 0.447314 | 1_3:+76161037 | None:intergenic |
CAGAGAAGACATGTCGTATC+GGG | 0.455443 | 1_3:+76160999 | None:intergenic |
GATGAAATCGTCAACCCAAC+CGG | 0.458704 | 1_3:-76154333 | Msa0141340:CDS |
TCCAACTTCCGTCGCATGAC+AGG | 0.462596 | 1_3:+76154157 | None:intergenic |
TGAGGACGCTCTTTGTGAGC+AGG | 0.462799 | 1_3:+76160958 | None:intergenic |
CATGGATATGGCACTGAAGA+AGG | 0.470703 | 1_3:-76154485 | Msa0141340:CDS |
ATGTTTACTTTGCTGACGAC+AGG | 0.476056 | 1_3:-76159638 | Msa0141340:intron |
CCATGTAGACTTTCTCTAGC+TGG | 0.476669 | 1_3:+76154503 | None:intergenic |
AGTGTCTTCTTTCACATGAA+AGG | 0.479919 | 1_3:+76160789 | None:intergenic |
TTACTTCACGGTGATTTCTA+CGG | 0.482839 | 1_3:+76161024 | None:intergenic |
CGTCAACCCAACCGGTAGAC+CGG | 0.488357 | 1_3:-76154325 | Msa0141340:CDS |
CCATTATTATTAGGTCTTGG+AGG | 0.503419 | 1_3:-76160864 | Msa0141340:intron |
TCAGCACGCCACTTGTATAC+CGG | 0.511012 | 1_3:+76154306 | None:intergenic |
TTGATGAAGACACAAGATAT+GGG | 0.519917 | 1_3:-76159855 | Msa0141340:intron |
CCAGCTAGAGAAAGTCTACA+TGG | 0.523733 | 1_3:-76154503 | Msa0141340:CDS |
GAGAAAGAGAGTTACGGTTG+AGG | 0.524326 | 1_3:+76160940 | None:intergenic |
TGAAACCACGATGTTTAGTA+GGG | 0.527276 | 1_3:+76161079 | None:intergenic |
AAGTAAACATGCTTGTTCGC+TGG | 0.531696 | 1_3:+76159651 | None:intergenic |
TTGTATACCGGTCTACCGGT+TGG | 0.532048 | 1_3:+76154318 | None:intergenic |
TTGTTTGTCTAAAATTCTGT+TGG | 0.539642 | 1_3:-76154117 | Msa0141340:three_prime_UTR |
ACGGTGATTTCTACGGTGGA+GGG | 0.559484 | 1_3:+76161031 | None:intergenic |
CTTACAAAGAGTTGCAAGCA+AGG | 0.563371 | 1_3:-76154540 | Msa0141340:CDS |
TCAGAGAAGACATGTCGTAT+CGG | 0.571231 | 1_3:+76160998 | None:intergenic |
GGAATATTGTCAGAGGTGGA+TGG | 0.576375 | 1_3:+76155759 | None:intergenic |
ATCAGGAATATTGTCAGAGG+TGG | 0.582102 | 1_3:+76155755 | None:intergenic |
CTTCACGGTGATTTCTACGG+TGG | 0.591836 | 1_3:+76161027 | None:intergenic |
CCACTTGTATACCGGTCTAC+CGG | 0.609261 | 1_3:+76154314 | None:intergenic |
TTTGTGAGCAGGTCTGGGAA+CGG | 0.611566 | 1_3:+76160969 | None:intergenic |
GTGATTTCTACGGTGGAGGG+TGG | 0.614851 | 1_3:+76161034 | None:intergenic |
AAGTAGTTAGTTACATACAC+TGG | 0.632112 | 1_3:+76160578 | None:intergenic |
TAATTACTCCTGTCATGCGA+CGG | 0.643906 | 1_3:-76154165 | Msa0141340:three_prime_UTR |
ATTATCAGGAATATTGTCAG+AGG | 0.655324 | 1_3:+76155752 | None:intergenic |
TAAAACCCTACTAAACATCG+TGG | 0.665068 | 1_3:-76161084 | Msa0141340:five_prime_UTR |
CCGGTAGACCGGTATACAAG+TGG | 0.669014 | 1_3:-76154314 | Msa0141340:CDS |
AAAAGCTGCTAATAGAAACG+AGG | 0.712242 | 1_3:-76160654 | Msa0141340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAATAAATTATATAAA+TGG | - | chr1_3:76156262-76156281 | Msa0141340:intron | 0.0% |
!! | TTGTTAAAAAAAATTAATTG+TGG | + | chr1_3:76156305-76156324 | None:intergenic | 10.0% |
!!! | ACATAATATATTTTCTTTTA+TGG | - | chr1_3:76156408-76156427 | Msa0141340:intron | 10.0% |
!!! | CATAATATATTTTCTTTTAT+GGG | - | chr1_3:76156409-76156428 | Msa0141340:intron | 10.0% |
!! | TAATACTAATAATAAAAGAA+GGG | + | chr1_3:76157271-76157290 | None:intergenic | 10.0% |
!! | ATAATACTAATAATAAAAGA+AGG | + | chr1_3:76157272-76157291 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTTTTTGAAC+AGG | + | chr1_3:76158745-76158764 | None:intergenic | 10.0% |
!!! | ATTTTTTCTCCATTATTATT+AGG | - | chr1_3:76154241-76154260 | Msa0141340:three_prime_UTR | 15.0% |
!! | TATGTATAAATTGTTAATGT+AGG | - | chr1_3:76155362-76155381 | Msa0141340:intron | 15.0% |
!! | ATTATACTATTAGATTAGAT+TGG | - | chr1_3:76155562-76155581 | Msa0141340:intron | 15.0% |
!!! | ATGATTTCTTTTAATTTGTA+GGG | + | chr1_3:76155653-76155672 | None:intergenic | 15.0% |
!!! | AATGATTTCTTTTAATTTGT+AGG | + | chr1_3:76155654-76155673 | None:intergenic | 15.0% |
!! | AATTAAAAGAAATCATTGTT+CGG | - | chr1_3:76155657-76155676 | Msa0141340:intron | 15.0% |
!!! | TTTTTTTTTTGTGCTTTAAA+TGG | - | chr1_3:76157709-76157728 | Msa0141340:intron | 15.0% |
!!! | TCTATTATTTTTTTTGAAGT+AGG | - | chr1_3:76158383-76158402 | Msa0141340:intron | 15.0% |
!! | ATATTCCTGATAATATTAAA+AGG | - | chr1_3:76159371-76159390 | Msa0141340:intron | 15.0% |
!!! | CTTTTTATAAGTTTTGAGTA+AGG | - | chr1_3:76154712-76154731 | Msa0141340:intron | 20.0% |
!! | TTAGTATATTTACGTAGTTT+AGG | - | chr1_3:76154813-76154832 | Msa0141340:intron | 20.0% |
!! | TAGTATATTTACGTAGTTTA+GGG | - | chr1_3:76154814-76154833 | Msa0141340:intron | 20.0% |
!!! | ATCTTTTCTTATAACAAGTT+TGG | - | chr1_3:76155515-76155534 | Msa0141340:intron | 20.0% |
!! | TGTAAAAATACAACTATAGA+GGG | + | chr1_3:76155619-76155638 | None:intergenic | 20.0% |
!! | TTGTAAAAATACAACTATAG+AGG | + | chr1_3:76155620-76155639 | None:intergenic | 20.0% |
!! | TATACATGAATTTGTAAGAT+TGG | + | chr1_3:76156145-76156164 | None:intergenic | 20.0% |
!!! | GTTTATTGATTAAGTAATTG+TGG | + | chr1_3:76156330-76156349 | None:intergenic | 20.0% |
!!! | TATTTGTTTCTTCACATAAT+TGG | - | chr1_3:76156973-76156992 | Msa0141340:intron | 20.0% |
!!! | ATTTGGGAAATTTTTAGATT+TGG | + | chr1_3:76157447-76157466 | None:intergenic | 20.0% |
!! | AAAAATTTCCCAAATCAATA+CGG | - | chr1_3:76157452-76157471 | Msa0141340:intron | 20.0% |
!!! | GAAACTGATTTAATTAAACA+TGG | + | chr1_3:76158029-76158048 | None:intergenic | 20.0% |
!! | GAAAATCAGATTATAAGTAA+GGG | - | chr1_3:76158423-76158442 | Msa0141340:intron | 20.0% |
!! | AAAATCAGATTATAAGTAAG+GGG | - | chr1_3:76158424-76158443 | Msa0141340:intron | 20.0% |
!! | AATGTGATTTAATTCAAAAC+AGG | - | chr1_3:76158986-76159005 | Msa0141340:intron | 20.0% |
!! | ATGTGATTTAATTCAAAACA+GGG | - | chr1_3:76158987-76159006 | Msa0141340:intron | 20.0% |
!! | CAAAATATGTAATATACATG+CGG | + | chr1_3:76159067-76159086 | None:intergenic | 20.0% |
!!! | CTATTTAGATTTTAGATGTA+AGG | - | chr1_3:76159114-76159133 | Msa0141340:intron | 20.0% |
!! | ATCATCATCTATAAAAATGT+AGG | - | chr1_3:76159287-76159306 | Msa0141340:intron | 20.0% |
!! | TCATCATCTATAAAAATGTA+GGG | - | chr1_3:76159288-76159307 | Msa0141340:intron | 20.0% |
!!! | CTTTACCTTTTAATATTATC+AGG | + | chr1_3:76159379-76159398 | None:intergenic | 20.0% |
!! | TACAATAAATGCTTAGTATT+AGG | - | chr1_3:76159580-76159599 | Msa0141340:intron | 20.0% |
!! | TTTGATAGACAAATTAAAAC+AGG | - | chr1_3:76159890-76159909 | Msa0141340:intron | 20.0% |
!! | TTGATAGACAAATTAAAACA+GGG | - | chr1_3:76159891-76159910 | Msa0141340:intron | 20.0% |
!! | CATGAAAATATGATTCAATA+TGG | + | chr1_3:76160349-76160368 | None:intergenic | 20.0% |
!!! | AAAAAACATTTCTAGAAATC+CGG | + | chr1_3:76160520-76160539 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTTCTTGCAC+AGG | - | chr1_3:76160538-76160557 | Msa0141340:intron | 20.0% |
!! | TCATTGTGTTAAATCATAAA+AGG | + | chr1_3:76160921-76160940 | None:intergenic | 20.0% |
!! | TAAATTACCTCATACAAAAT+TGG | + | chr1_3:76161027-76161046 | None:intergenic | 20.0% |
! | AGAAAATAACGTATATGAAG+AGG | + | chr1_3:76154202-76154221 | None:intergenic | 25.0% |
!!! | TTTTTGTTTGTTTCAATCAC+AGG | - | chr1_3:76154427-76154446 | Msa0141340:intron | 25.0% |
!!! | GGATGAGTTTTATTTTAAGA+TGG | - | chr1_3:76154481-76154500 | Msa0141340:CDS | 25.0% |
! | GTTAATTCAAAAACTGTTGA+TGG | - | chr1_3:76154503-76154522 | Msa0141340:CDS | 25.0% |
!! | TAACTACTTTCTATCCTTTT+CGG | - | chr1_3:76154550-76154569 | Msa0141340:CDS | 25.0% |
!! | GTTTTATGATTGTTAGTTGT+TGG | - | chr1_3:76155185-76155204 | Msa0141340:intron | 25.0% |
! | TTCTTATAACAAGTTTGGAT+TGG | - | chr1_3:76155520-76155539 | Msa0141340:intron | 25.0% |
! | TCTTATAACAAGTTTGGATT+GGG | - | chr1_3:76155521-76155540 | Msa0141340:intron | 25.0% |
! | ACTAACTTAAGAACAAACTA+TGG | + | chr1_3:76155747-76155766 | None:intergenic | 25.0% |
!!! | ATATAGTTTTTTCCTACAGT+AGG | + | chr1_3:76155870-76155889 | None:intergenic | 25.0% |
! | AAAAAAAGAGGTCCATATTA+GGG | + | chr1_3:76156438-76156457 | None:intergenic | 25.0% |
! | TAAAAAAAGAGGTCCATATT+AGG | + | chr1_3:76156439-76156458 | None:intergenic | 25.0% |
!!! | TAATATGGACCTCTTTTTTT+AGG | - | chr1_3:76156438-76156457 | Msa0141340:intron | 25.0% |
!!! | AATATGGACCTCTTTTTTTA+GGG | - | chr1_3:76156439-76156458 | Msa0141340:intron | 25.0% |
! | ATGTAAACCAAAAAGGAAAT+GGG | + | chr1_3:76156508-76156527 | None:intergenic | 25.0% |
! | AATGTAAACCAAAAAGGAAA+TGG | + | chr1_3:76156509-76156528 | None:intergenic | 25.0% |
! | TAGAGAGCAGAATATAAAAA+GGG | + | chr1_3:76156542-76156561 | None:intergenic | 25.0% |
! | ATAGAGAGCAGAATATAAAA+AGG | + | chr1_3:76156543-76156562 | None:intergenic | 25.0% |
! | GTGAATGATGAAATTAAAGT+TGG | + | chr1_3:76156683-76156702 | None:intergenic | 25.0% |
!!! | CTTCACTTTTATAAGGATTT+TGG | - | chr1_3:76156808-76156827 | Msa0141340:intron | 25.0% |
!!! | GGATCAAACATTTTTTTTCA+TGG | - | chr1_3:76156829-76156848 | Msa0141340:intron | 25.0% |
!! | ATGGATATCATTGTTATTAC+TGG | + | chr1_3:76156871-76156890 | None:intergenic | 25.0% |
! | AGTAATAACAATGATATCCA+TGG | - | chr1_3:76156870-76156889 | Msa0141340:intron | 25.0% |
!!! | ATGTCGAAGTTTTTTATTGA+AGG | - | chr1_3:76157009-76157028 | Msa0141340:intron | 25.0% |
!!! | TGTCGAAGTTTTTTATTGAA+GGG | - | chr1_3:76157010-76157029 | Msa0141340:intron | 25.0% |
! | TACAATGTGAAATGAAGAAA+TGG | - | chr1_3:76157120-76157139 | Msa0141340:intron | 25.0% |
! | TCATCATCATAAATATGACT+AGG | - | chr1_3:76157508-76157527 | Msa0141340:intron | 25.0% |
!!! | AATTTTTTTTCGTCTACACT+AGG | + | chr1_3:76157743-76157762 | None:intergenic | 25.0% |
!! | AATACAGCAATTTAAAGTGT+AGG | - | chr1_3:76157909-76157928 | Msa0141340:intron | 25.0% |
! | GTTCTTAATTAGATATGTCA+TGG | + | chr1_3:76157973-76157992 | None:intergenic | 25.0% |
! | TATCAATGACAATTAAGAAG+TGG | - | chr1_3:76157994-76158013 | Msa0141340:intron | 25.0% |
!!! | TTTTTTTTGAAGTAGGATGA+TGG | - | chr1_3:76158390-76158409 | Msa0141340:intron | 25.0% |
!!! | TTTTTTTGAAGTAGGATGAT+GGG | - | chr1_3:76158391-76158410 | Msa0141340:intron | 25.0% |
! | CGAAAATCAGATTATAAGTA+AGG | - | chr1_3:76158422-76158441 | Msa0141340:intron | 25.0% |
!!! | TACTCCTTTCTTATTTCTAT+GGG | - | chr1_3:76158863-76158882 | Msa0141340:intron | 25.0% |
!! | CGCATGTATATTACATATTT+TGG | - | chr1_3:76159065-76159084 | Msa0141340:intron | 25.0% |
! | ATAACAAGTAACAAGAATAC+AGG | + | chr1_3:76159223-76159242 | None:intergenic | 25.0% |
!! | ACTAAATAATTCTAGGGATA+TGG | - | chr1_3:76159490-76159509 | Msa0141340:intron | 25.0% |
! | ATAAATGCTTAGTATTAGGA+TGG | - | chr1_3:76159584-76159603 | Msa0141340:intron | 25.0% |
! | TGTTTACGTATATCTTGTTA+TGG | - | chr1_3:76159840-76159859 | Msa0141340:CDS | 25.0% |
! | TAAAACAGGGAAAAATAGAA+TGG | - | chr1_3:76159904-76159923 | Msa0141340:intron | 25.0% |
! | TCCTTATTCGACTTAAATAT+TGG | + | chr1_3:76159932-76159951 | None:intergenic | 25.0% |
!! | AATCATATTTTCATGCTACT+GGG | - | chr1_3:76160354-76160373 | Msa0141340:intron | 25.0% |
! | TGCATATGTAAAGACTAAAA+CGG | + | chr1_3:76160696-76160715 | None:intergenic | 25.0% |
! | TCCATATATGATCAGAAAAA+TGG | - | chr1_3:76160736-76160755 | Msa0141340:intron | 25.0% |
!!! | ACCATTTTTCTGATCATATA+TGG | + | chr1_3:76160740-76160759 | None:intergenic | 25.0% |
! | TATATGATCAGAAAAATGGT+AGG | - | chr1_3:76160740-76160759 | Msa0141340:intron | 25.0% |
!! | TTGTTTGTCTAAAATTCTGT+TGG | - | chr1_3:76160997-76161016 | Msa0141340:exon | 25.0% |
!! | AGGCCTGATAATTTTAATCT+TGG | - | chr1_3:76153990-76154009 | Msa0141340:three_prime_UTR | 30.0% |
GCACCAAGATTAAAATTATC+AGG | + | chr1_3:76153996-76154015 | None:intergenic | 30.0% | |
!! | GATAATTTTAATCTTGGTGC+TGG | - | chr1_3:76153996-76154015 | Msa0141340:three_prime_UTR | 30.0% |
TCTCCATTATTATTAGGTCT+TGG | - | chr1_3:76154247-76154266 | Msa0141340:three_prime_UTR | 30.0% | |
ATGTGAAAGAAGACACTTTA+CGG | - | chr1_3:76154331-76154350 | Msa0141340:CDS | 30.0% | |
AGTGAAATATTGCAGAGAAA+GGG | + | chr1_3:76154377-76154396 | None:intergenic | 30.0% | |
AAGTGAAATATTGCAGAGAA+AGG | + | chr1_3:76154378-76154397 | None:intergenic | 30.0% | |
AAGTAGTTAGTTACATACAC+TGG | + | chr1_3:76154539-76154558 | None:intergenic | 30.0% | |
!! | GCTATTTTCGTAAGATATCT+CGG | - | chr1_3:76154640-76154659 | Msa0141340:intron | 30.0% |
! | CATGTTTGAAGCTTATCTAT+TGG | + | chr1_3:76154756-76154775 | None:intergenic | 30.0% |
CAATAGATAAGCTTCAAACA+TGG | - | chr1_3:76154754-76154773 | Msa0141340:intron | 30.0% | |
! | TGACTACTTTCTATCCTTTT+CGG | - | chr1_3:76154905-76154924 | Msa0141340:intron | 30.0% |
! | TTAAGGTGTTTATCCAAACA+TGG | + | chr1_3:76154931-76154950 | None:intergenic | 30.0% |
ATGCTATAAGCTGCAAATTA+AGG | + | chr1_3:76154948-76154967 | None:intergenic | 30.0% | |
ATAAAAATCAAGGGTCTGTT+TGG | + | chr1_3:76155158-76155177 | None:intergenic | 30.0% | |
ACTAGCCACATAAAAATCAA+GGG | + | chr1_3:76155167-76155186 | None:intergenic | 30.0% | |
AACTAGCCACATAAAAATCA+AGG | + | chr1_3:76155168-76155187 | None:intergenic | 30.0% | |
!!! | GTTGTTGGTTTTTCTTTTGT+AGG | - | chr1_3:76155200-76155219 | Msa0141340:intron | 30.0% |
! | GTTTTTCTTTTGTAGGAATG+AGG | - | chr1_3:76155207-76155226 | Msa0141340:intron | 30.0% |
ATTGATGAAGACACAAGATA+TGG | - | chr1_3:76155258-76155277 | Msa0141340:intron | 30.0% | |
TTGATGAAGACACAAGATAT+GGG | - | chr1_3:76155259-76155278 | Msa0141340:intron | 30.0% | |
AAAGCTTCAAAGTGAGAAAA+AGG | - | chr1_3:76155294-76155313 | Msa0141340:intron | 30.0% | |
ATGATCAATCAAGTGCAAAT+TGG | + | chr1_3:76155440-76155459 | None:intergenic | 30.0% | |
AAATCATTGTTCGGATTTGA+TGG | - | chr1_3:76155666-76155685 | Msa0141340:intron | 30.0% | |
TTAAGTTAGTTAACTCGATC+AGG | - | chr1_3:76155757-76155776 | Msa0141340:CDS | 30.0% | |
CATGAATTTGTAAGATTGGT+AGG | + | chr1_3:76156141-76156160 | None:intergenic | 30.0% | |
AAAAAAGAGGTCCATATTAG+GGG | + | chr1_3:76156437-76156456 | None:intergenic | 30.0% | |
GCACTAAATGTAAACCAAAA+AGG | + | chr1_3:76156515-76156534 | None:intergenic | 30.0% | |
!! | TAAAGTTGGTGTAACAAAGA+GGG | + | chr1_3:76156669-76156688 | None:intergenic | 30.0% |
!! | TTAAAGTTGGTGTAACAAAG+AGG | + | chr1_3:76156670-76156689 | None:intergenic | 30.0% |
!! | AGATGCAATAATTGGTGTTT+TGG | + | chr1_3:76156752-76156771 | None:intergenic | 30.0% |
AAAGCTAGAGATGCAATAAT+TGG | + | chr1_3:76156760-76156779 | None:intergenic | 30.0% | |
!! | AAACGAGCTTCACTTTTATA+AGG | - | chr1_3:76156801-76156820 | Msa0141340:intron | 30.0% |
! | ATCATTGTTATTACTGGAAC+TGG | + | chr1_3:76156865-76156884 | None:intergenic | 30.0% |
! | TTATCTCTGGTCTTCAAAAT+GGG | + | chr1_3:76156932-76156951 | None:intergenic | 30.0% |
GATAAGCAAACTTCTTCAAT+TGG | - | chr1_3:76156947-76156966 | Msa0141340:intron | 30.0% | |
ACGATAGGTTAAGATTCATA+TGG | - | chr1_3:76157081-76157100 | Msa0141340:intron | 30.0% | |
ATAGGTTAAGATTCATATGG+AGG | - | chr1_3:76157084-76157103 | Msa0141340:intron | 30.0% | |
AATGTGAAATGAAGAAATGG+AGG | - | chr1_3:76157123-76157142 | Msa0141340:intron | 30.0% | |
GAAACAGATTTGTAACCAAA+TGG | - | chr1_3:76157155-76157174 | Msa0141340:intron | 30.0% | |
ATTTGTAACCAAATGGAAAC+TGG | - | chr1_3:76157162-76157181 | Msa0141340:intron | 30.0% | |
!!! | TAGTATGGACCTCTTTTTTA+GGG | + | chr1_3:76157242-76157261 | None:intergenic | 30.0% |
TAAAAAAGAGGTCCATACTA+GGG | - | chr1_3:76157242-76157261 | Msa0141340:intron | 30.0% | |
!! | ATGAACTTAGTCTTTCGTTT+TGG | + | chr1_3:76157364-76157383 | None:intergenic | 30.0% |
! | TTATGATGATGACATTGATG+AGG | + | chr1_3:76157500-76157519 | None:intergenic | 30.0% |
! | AGGTTAATTCTGAAGACAAA+TGG | + | chr1_3:76157616-76157635 | None:intergenic | 30.0% |
GAAAATCAGCTATTCATATG+AGG | + | chr1_3:76157639-76157658 | None:intergenic | 30.0% | |
TATGTGTCTAATTCAGCTTA+TGG | + | chr1_3:76157671-76157690 | None:intergenic | 30.0% | |
ATAAGCTGAATTAGACACAT+AGG | - | chr1_3:76157670-76157689 | Msa0141340:intron | 30.0% | |
TTACCCATACCTATTCTTAT+AGG | + | chr1_3:76157845-76157864 | None:intergenic | 30.0% | |
TATAAGAATAGGTATGGGTA+AGG | - | chr1_3:76157844-76157863 | Msa0141340:intron | 30.0% | |
TTCTTGAATAAGTGTAGTGT+AGG | - | chr1_3:76158084-76158103 | Msa0141340:intron | 30.0% | |
GAAATGATGCAATAAAGACA+AGG | + | chr1_3:76158240-76158259 | None:intergenic | 30.0% | |
TCTTAAGGTCAAATAAGAAG+TGG | + | chr1_3:76158306-76158325 | None:intergenic | 30.0% | |
!!! | TTTTTTGAAGTAGGATGATG+GGG | - | chr1_3:76158392-76158411 | Msa0141340:intron | 30.0% |
AGATTATAAGTAAGGGGTTT+GGG | - | chr1_3:76158430-76158449 | Msa0141340:intron | 30.0% | |
CTGTTCTATTCTTCTGTAAA+TGG | + | chr1_3:76158480-76158499 | None:intergenic | 30.0% | |
TTTACAGAAGAATAGAACAG+AGG | - | chr1_3:76158480-76158499 | Msa0141340:intron | 30.0% | |
! | CATATTCTTTTCTTCTCTCA+CGG | + | chr1_3:76158663-76158682 | None:intergenic | 30.0% |
GAGAAGAAAAGAATATGCTT+TGG | - | chr1_3:76158666-76158685 | Msa0141340:intron | 30.0% | |
!! | AGTCAGGTTTTATCGAATAT+GGG | + | chr1_3:76158788-76158807 | None:intergenic | 30.0% |
CATAGAAATAAGAAAGGAGT+AGG | + | chr1_3:76158864-76158883 | None:intergenic | 30.0% | |
!! | CTACTCCTTTCTTATTTCTA+TGG | - | chr1_3:76158862-76158881 | Msa0141340:intron | 30.0% |
GATGATAAAAAAGTTGACTG+AGG | + | chr1_3:76159273-76159292 | None:intergenic | 30.0% | |
TCTATAAAAATGTAGGGAAG+AGG | - | chr1_3:76159294-76159313 | Msa0141340:intron | 30.0% | |
ATTATCAGGAATATTGTCAG+AGG | + | chr1_3:76159365-76159384 | None:intergenic | 30.0% | |
!!! | CAGGCTTCTAAATTTTTTGT+CGG | - | chr1_3:76159466-76159485 | Msa0141340:intron | 30.0% |
TGTCGGTACTAAATAATTCT+AGG | - | chr1_3:76159483-76159502 | Msa0141340:intron | 30.0% | |
GTCGGTACTAAATAATTCTA+GGG | - | chr1_3:76159484-76159503 | Msa0141340:intron | 30.0% | |
! | TGGTCTGTACAGTAATATTT+TGG | - | chr1_3:76159604-76159623 | Msa0141340:intron | 30.0% |
! | TCGCTTTCTGAAAATTTGTT+TGG | - | chr1_3:76159694-76159713 | Msa0141340:CDS | 30.0% |
! | ATTTGTTTGGCTCATATCTT+TGG | - | chr1_3:76159707-76159726 | Msa0141340:intron | 30.0% |
GCCAATATTTAAGTCGAATA+AGG | - | chr1_3:76159928-76159947 | Msa0141340:intron | 30.0% | |
TTCTTGATGAAATTGTCTAC+TGG | + | chr1_3:76160019-76160038 | None:intergenic | 30.0% | |
GACAATTTCATCAAGAAAGT+AGG | - | chr1_3:76160022-76160041 | Msa0141340:intron | 30.0% | |
ATAATCTAAGTCTGCATTGA+AGG | - | chr1_3:76160045-76160064 | Msa0141340:intron | 30.0% | |
!!! | GCTATTAGTTTTCTGCTTTT+TGG | - | chr1_3:76160323-76160342 | Msa0141340:intron | 30.0% |
! | GAATCATATTTTCATGCTAC+TGG | - | chr1_3:76160353-76160372 | Msa0141340:intron | 30.0% |
CAAGATGAAAAAAGAACGAA+TGG | + | chr1_3:76160482-76160501 | None:intergenic | 30.0% | |
!!! | CATTCGTTCTTTTTTCATCT+TGG | - | chr1_3:76160480-76160499 | Msa0141340:intron | 30.0% |
!!! | AGTTGCAGGTATTGATATTT+TGG | - | chr1_3:76160652-76160671 | Msa0141340:CDS | 30.0% |
GCATATGTAAAGACTAAAAC+GGG | + | chr1_3:76160695-76160714 | None:intergenic | 30.0% | |
! | TGGTTATCCAATTTTGTATG+AGG | - | chr1_3:76161017-76161036 | Msa0141340:five_prime_UTR | 30.0% |
!! | CTTGAGAGACTTGTTTATTT+TGG | - | chr1_3:76161085-76161104 | Msa0141340:five_prime_UTR | 30.0% |
TAAAACCCTACTAAACATCG+TGG | - | chr1_3:76154030-76154049 | Msa0141340:three_prime_UTR | 35.0% | |
TGAAACCACGATGTTTAGTA+GGG | + | chr1_3:76154038-76154057 | None:intergenic | 35.0% | |
TTACTTCACGGTGATTTCTA+CGG | + | chr1_3:76154093-76154112 | None:intergenic | 35.0% | |
CCTCCAAGACCTAATAATAA+TGG | + | chr1_3:76154253-76154272 | None:intergenic | 35.0% | |
CCATTATTATTAGGTCTTGG+AGG | - | chr1_3:76154250-76154269 | Msa0141340:three_prime_UTR | 35.0% | |
AGTGTCTTCTTTCACATGAA+AGG | + | chr1_3:76154328-76154347 | None:intergenic | 35.0% | |
TGTGAAAGAAGACACTTTAC+GGG | - | chr1_3:76154332-76154351 | Msa0141340:CDS | 35.0% | |
TGTTTCAATCACAGGTACTT+AGG | - | chr1_3:76154435-76154454 | Msa0141340:intron | 35.0% | |
GTTTCAATCACAGGTACTTA+GGG | - | chr1_3:76154436-76154455 | Msa0141340:intron | 35.0% | |
AAAAGCTGCTAATAGAAACG+AGG | - | chr1_3:76154460-76154479 | Msa0141340:intron | 35.0% | |
TTTATGAGACATCTCCGAAA+AGG | + | chr1_3:76154567-76154586 | None:intergenic | 35.0% | |
TAAGATATCTCGGCAAGTTT+GGG | - | chr1_3:76154650-76154669 | Msa0141340:intron | 35.0% | |
TAGGGACTAAATTGAAGTGT+AGG | - | chr1_3:76154832-76154851 | Msa0141340:intron | 35.0% | |
! | AGCTGTTTCATAAGCTATCT+TGG | - | chr1_3:76155014-76155033 | Msa0141340:intron | 35.0% |
TTTCATAAGCTATCTTGGTG+AGG | - | chr1_3:76155019-76155038 | Msa0141340:intron | 35.0% | |
! | ACAGACCCTTGATTTTTATG+TGG | - | chr1_3:76155159-76155178 | Msa0141340:intron | 35.0% |
! | TAGCTTTTCAACTTTCTGCA+AGG | + | chr1_3:76155413-76155432 | None:intergenic | 35.0% |
TTGGTCTACTTAAATCTTCG+TGG | - | chr1_3:76155581-76155600 | Msa0141340:intron | 35.0% | |
TGGTCTACTTAAATCTTCGT+GGG | - | chr1_3:76155582-76155601 | Msa0141340:intron | 35.0% | |
ATACAACTATAGAGGGACAA+AGG | + | chr1_3:76155612-76155631 | None:intergenic | 35.0% | |
! | AGGCTATTAATGCTGATTGA+TGG | - | chr1_3:76155777-76155796 | Msa0141340:CDS | 35.0% |
! | GGCTATTAATGCTGATTGAT+GGG | - | chr1_3:76155778-76155797 | Msa0141340:CDS | 35.0% |
TGATCATAACATCCTACTGT+AGG | - | chr1_3:76155855-76155874 | Msa0141340:intron | 35.0% | |
! | GATCTCAATTTTGTCTACCT+TGG | + | chr1_3:76156053-76156072 | None:intergenic | 35.0% |
ACAAAATTGAGATCCTATGC+AGG | - | chr1_3:76156059-76156078 | Msa0141340:intron | 35.0% | |
! | TTTTATGGGAACCCCTAATA+TGG | - | chr1_3:76156423-76156442 | Msa0141340:intron | 35.0% |
CTATTGCAGGTCATTTAACA+AGG | + | chr1_3:76156477-76156496 | None:intergenic | 35.0% | |
TGTTAAATGACCTGCAATAG+TGG | - | chr1_3:76156477-76156496 | Msa0141340:intron | 35.0% | |
GTTAAATGACCTGCAATAGT+GGG | - | chr1_3:76156478-76156497 | Msa0141340:intron | 35.0% | |
ATTCATATGAAGGAGGAAAG+GGG | + | chr1_3:76156582-76156601 | None:intergenic | 35.0% | |
GATTCATATGAAGGAGGAAA+GGG | + | chr1_3:76156583-76156602 | None:intergenic | 35.0% | |
AGATTCATATGAAGGAGGAA+AGG | + | chr1_3:76156584-76156603 | None:intergenic | 35.0% | |
CGTAAAGATTCATATGAAGG+AGG | + | chr1_3:76156589-76156608 | None:intergenic | 35.0% | |
! | GAAGCTCGTTTTCTTCTTTA+AGG | + | chr1_3:76156792-76156811 | None:intergenic | 35.0% |
ATGATATCCATGGTTGAAGT+TGG | - | chr1_3:76156880-76156899 | Msa0141340:intron | 35.0% | |
TGATATCCATGGTTGAAGTT+GGG | - | chr1_3:76156881-76156900 | Msa0141340:intron | 35.0% | |
ACCAATTTCAACAAGTGAAC+AGG | - | chr1_3:76156906-76156925 | Msa0141340:intron | 35.0% | |
! | CTTATCTCTGGTCTTCAAAA+TGG | + | chr1_3:76156933-76156952 | None:intergenic | 35.0% |
! | TGAAGAAGTTTGCTTATCTC+TGG | + | chr1_3:76156945-76156964 | None:intergenic | 35.0% |
TAGAGAGAGAAAGATACGAT+AGG | - | chr1_3:76157066-76157085 | Msa0141340:intron | 35.0% | |
GTTAAGATTCATATGGAGGA+AGG | - | chr1_3:76157088-76157107 | Msa0141340:intron | 35.0% | |
TAACCAAATGGAAACTGGAA+AGG | - | chr1_3:76157167-76157186 | Msa0141340:intron | 35.0% | |
! | CTATTGCCTGTCATTTAACA+AGG | - | chr1_3:76157204-76157223 | Msa0141340:intron | 35.0% |
!!! | CTAGTATGGACCTCTTTTTT+AGG | + | chr1_3:76157243-76157262 | None:intergenic | 35.0% |
CTAAAAAAGAGGTCCATACT+AGG | - | chr1_3:76157241-76157260 | Msa0141340:intron | 35.0% | |
AAAAAAGAGGTCCATACTAG+GGG | - | chr1_3:76157243-76157262 | Msa0141340:intron | 35.0% | |
!! | GTGAATGACCGTATTGATTT+GGG | + | chr1_3:76157463-76157482 | None:intergenic | 35.0% |
!! | TGTGAATGACCGTATTGATT+TGG | + | chr1_3:76157464-76157483 | None:intergenic | 35.0% |
AATCAGCTATTCATATGAGG+AGG | + | chr1_3:76157636-76157655 | None:intergenic | 35.0% | |
AAGTTTGACGTGAAGTTCAT+CGG | + | chr1_3:76157778-76157797 | None:intergenic | 35.0% | |
AGAGCAAACCATTGCAATTA+TGG | - | chr1_3:76157810-76157829 | Msa0141340:intron | 35.0% | |
GTGCAAATCCATAATTGCAA+TGG | + | chr1_3:76157821-76157840 | None:intergenic | 35.0% | |
ATTTGCACGCCTATAAGAAT+AGG | - | chr1_3:76157833-76157852 | Msa0141340:intron | 35.0% | |
ACGCCTATAAGAATAGGTAT+GGG | - | chr1_3:76157839-76157858 | Msa0141340:intron | 35.0% | |
AATCCAACAATCGTGAATGT+TGG | + | chr1_3:76158173-76158192 | None:intergenic | 35.0% | |
TTGCATCATTTCACTAAAGC+CGG | - | chr1_3:76158248-76158267 | Msa0141340:intron | 35.0% | |
ATAAGAAGTGGAAAAACGAG+TGG | + | chr1_3:76158294-76158313 | None:intergenic | 35.0% | |
ACTGTCATTCAAGCATCTTA+AGG | + | chr1_3:76158321-76158340 | None:intergenic | 35.0% | |
AAGATGCTTGAATGACAGTA+AGG | - | chr1_3:76158322-76158341 | Msa0141340:intron | 35.0% | |
AGATGCTTGAATGACAGTAA+GGG | - | chr1_3:76158323-76158342 | Msa0141340:intron | 35.0% | |
GAATGTTCATATCTGAGCAA+TGG | - | chr1_3:76158357-76158376 | Msa0141340:intron | 35.0% | |
CAGATTATAAGTAAGGGGTT+TGG | - | chr1_3:76158429-76158448 | Msa0141340:intron | 35.0% | |
GATTATAAGTAAGGGGTTTG+GGG | - | chr1_3:76158431-76158450 | Msa0141340:intron | 35.0% | |
AATAGAACAGAGGATGAACT+CGG | - | chr1_3:76158490-76158509 | Msa0141340:intron | 35.0% | |
!! | CAGTCAGGTTTTATCGAATA+TGG | + | chr1_3:76158789-76158808 | None:intergenic | 35.0% |
GATGCCCATAGAAATAAGAA+AGG | + | chr1_3:76158870-76158889 | None:intergenic | 35.0% | |
AGTAACAAGAATACAGGAGA+GGG | + | chr1_3:76159217-76159236 | None:intergenic | 35.0% | |
AAGTAACAAGAATACAGGAG+AGG | + | chr1_3:76159218-76159237 | None:intergenic | 35.0% | |
AAAAGGTAAAGCCCTACATT+TGG | - | chr1_3:76159388-76159407 | Msa0141340:intron | 35.0% | |
AGTCTTCAAAGCCAAATGTA+GGG | + | chr1_3:76159402-76159421 | None:intergenic | 35.0% | |
! | GATGTTTTCTGTGATTACAC+AGG | - | chr1_3:76159447-76159466 | Msa0141340:intron | 35.0% |
CGGAGATGAAAAAATTGCAA+TGG | + | chr1_3:76159635-76159654 | None:intergenic | 35.0% | |
!! | ATTGTAATGGACACACCAAA+GGG | + | chr1_3:76159659-76159678 | None:intergenic | 35.0% |
TGATTACTATTGAGGCTTCA+TGG | + | chr1_3:76159761-76159780 | None:intergenic | 35.0% | |
ATAGGGTGTGATTACTATTG+AGG | + | chr1_3:76159769-76159788 | None:intergenic | 35.0% | |
TCAAACCTTGTGTTTGGATA+GGG | + | chr1_3:76159786-76159805 | None:intergenic | 35.0% | |
!! | TGAAGGAGATTGCTTGTTAT+TGG | - | chr1_3:76160062-76160081 | Msa0141340:intron | 35.0% |
ATTAGGGAGATTGAATGTTG+TGG | - | chr1_3:76160207-76160226 | Msa0141340:intron | 35.0% | |
AATGTTGGCGGTCATAATTA+GGG | - | chr1_3:76160241-76160260 | Msa0141340:intron | 35.0% | |
AGAGAAAGTCTACATGGATA+TGG | - | chr1_3:76160617-76160636 | Msa0141340:CDS | 35.0% | |
! | ACTAAAACGGGCTCATAATA+AGG | + | chr1_3:76160683-76160702 | None:intergenic | 35.0% |
CTGAAACCACGATGTTTAGT+AGG | + | chr1_3:76154039-76154058 | None:intergenic | 40.0% | |
! | TCGTATCGGGTTTTACTTCA+CGG | + | chr1_3:76154105-76154124 | None:intergenic | 40.0% |
TCAGAGAAGACATGTCGTAT+CGG | + | chr1_3:76154119-76154138 | None:intergenic | 40.0% | |
GAGGAAGAGAAAGAGAGTTA+CGG | + | chr1_3:76154183-76154202 | None:intergenic | 40.0% | |
AGGTCTTGGAGGAAGAAATT+CGG | - | chr1_3:76154261-76154280 | Msa0141340:three_prime_UTR | 40.0% | |
GTAAGATATCTCGGCAAGTT+TGG | - | chr1_3:76154649-76154668 | Msa0141340:intron | 40.0% | |
TCGGCAAGTTTGGGAAAATA+AGG | - | chr1_3:76154659-76154678 | Msa0141340:intron | 40.0% | |
ACTGATGCTAACCATCAACT+TGG | + | chr1_3:76154860-76154879 | None:intergenic | 40.0% | |
AGGATAGAAAGTAGTCACAC+TGG | + | chr1_3:76154902-76154921 | None:intergenic | 40.0% | |
TTATCCAAACATGGCCGAAA+AGG | + | chr1_3:76154922-76154941 | None:intergenic | 40.0% | |
AAGTAAACATGCTTGTTCGC+TGG | + | chr1_3:76155466-76155485 | None:intergenic | 40.0% | |
ATGTTTACTTTGCTGACGAC+AGG | - | chr1_3:76155476-76155495 | Msa0141340:intron | 40.0% | |
CATTGTTCGGATTTGATGGA+TGG | - | chr1_3:76155670-76155689 | Msa0141340:intron | 40.0% | |
TATGATCATTCAACCCCTCT+CGG | + | chr1_3:76155843-76155862 | None:intergenic | 40.0% | |
TTCTCACAAAGCTGTAACCA+AGG | - | chr1_3:76156033-76156052 | Msa0141340:intron | 40.0% | |
ATTGAGATCCTATGCAGGAT+CGG | - | chr1_3:76156064-76156083 | Msa0141340:intron | 40.0% | |
AGGGTTACAAGATCGTGAAT+CGG | - | chr1_3:76156090-76156109 | Msa0141340:intron | 40.0% | |
TGGGTGAACCCTAAAAAAAG+AGG | + | chr1_3:76156450-76156469 | None:intergenic | 40.0% | |
!!! | CTTTTTTTAGGGTTCACCCA+TGG | - | chr1_3:76156450-76156469 | Msa0141340:intron | 40.0% |
GGTCATTTAACAAGGACCAT+GGG | + | chr1_3:76156469-76156488 | None:intergenic | 40.0% | |
AGGTCATTTAACAAGGACCA+TGG | + | chr1_3:76156470-76156489 | None:intergenic | 40.0% | |
! | GGGTAATCCCATTTCCTTTT+TGG | - | chr1_3:76156498-76156517 | Msa0141340:intron | 40.0% |
TTCATATGAAGGAGGAAAGG+GGG | + | chr1_3:76156581-76156600 | None:intergenic | 40.0% | |
GCGCGTAAAGATTCATATGA+AGG | + | chr1_3:76156592-76156611 | None:intergenic | 40.0% | |
GTAACAAAGAGGGAGTTATC+AGG | + | chr1_3:76156659-76156678 | None:intergenic | 40.0% | |
! | GCCTGTTCACTTGTTGAAAT+TGG | + | chr1_3:76156910-76156929 | None:intergenic | 40.0% |
CTTCCTTTCCAGTTTCCATT+TGG | + | chr1_3:76157173-76157192 | None:intergenic | 40.0% | |
GTTAAATGACAGGCAATAGC+AGG | + | chr1_3:76157203-76157222 | None:intergenic | 40.0% | |
CATGGTCCTTGTTAAATGAC+AGG | + | chr1_3:76156468-76156487 | None:intergenic | 40.0% | |
! | CTGTCATTTAACAAGGACCA+TGG | - | chr1_3:76157211-76157230 | Msa0141340:intron | 40.0% |
CATTTAACAAGGACCATGGA+TGG | - | chr1_3:76157215-76157234 | Msa0141340:intron | 40.0% | |
!!! | TCTTTTTTAGGGTCCATCCA+TGG | + | chr1_3:76157231-76157250 | None:intergenic | 40.0% |
ATGGATGGACCCTAAAAAAG+AGG | - | chr1_3:76157230-76157249 | Msa0141340:intron | 40.0% | |
TGATGACATTGATGAGGATG+AGG | + | chr1_3:76157494-76157513 | None:intergenic | 40.0% | |
ATGAAGACATCTTACACCAC+TGG | + | chr1_3:76157562-76157581 | None:intergenic | 40.0% | |
CAAATGGCTTGAGAATGTGA+AGG | + | chr1_3:76157600-76157619 | None:intergenic | 40.0% | |
GATGAACTTCACGTCAAACT+TGG | - | chr1_3:76157777-76157796 | Msa0141340:intron | 40.0% | |
!! | ATTGCAATGGTTTGCTCTGT+GGG | + | chr1_3:76157808-76157827 | None:intergenic | 40.0% |
!! | AATTGCAATGGTTTGCTCTG+TGG | + | chr1_3:76157809-76157828 | None:intergenic | 40.0% |
CACGCCTATAAGAATAGGTA+TGG | - | chr1_3:76157838-76157857 | Msa0141340:intron | 40.0% | |
ATAGGTATGGGTAAGGTAAC+TGG | - | chr1_3:76157851-76157870 | Msa0141340:intron | 40.0% | |
TATGGGTAAGGTAACTGGTA+TGG | - | chr1_3:76157856-76157875 | Msa0141340:intron | 40.0% | |
ATGGGTAAGGTAACTGGTAT+GGG | - | chr1_3:76157857-76157876 | Msa0141340:intron | 40.0% | |
TAAGGTAACTGGTATGGGTA+AGG | - | chr1_3:76157862-76157881 | Msa0141340:intron | 40.0% | |
TAAGGTAACTGGTACGATAG+TGG | - | chr1_3:76157880-76157899 | Msa0141340:intron | 40.0% | |
GATGCTTGAATGACAGTAAG+GGG | - | chr1_3:76158324-76158343 | Msa0141340:intron | 40.0% | |
GGAAAATACTATCCACTGCT+TGG | - | chr1_3:76158452-76158471 | Msa0141340:intron | 40.0% | |
CCTCGTTATATTGTCAGCAA+TGG | + | chr1_3:76158602-76158621 | None:intergenic | 40.0% | |
CCATTGCTGACAATATAACG+AGG | - | chr1_3:76158599-76158618 | Msa0141340:intron | 40.0% | |
!! | GGTTTTATCGAATATGGGAC+AGG | + | chr1_3:76158783-76158802 | None:intergenic | 40.0% |
!! | ATCACAAGTTGGTTACAGTC+AGG | + | chr1_3:76158804-76158823 | None:intergenic | 40.0% |
GACTGTAACCAACTTGTGAT+CGG | - | chr1_3:76158804-76158823 | Msa0141340:intron | 40.0% | |
TAAGAAAGGAGTAGGATCAC+TGG | + | chr1_3:76158856-76158875 | None:intergenic | 40.0% | |
!! | CATAGAGGTACTTGGATTGT+AGG | - | chr1_3:76158898-76158917 | Msa0141340:intron | 40.0% |
TGATCTTACAAACAGCGGTT+GGG | - | chr1_3:76158947-76158966 | Msa0141340:intron | 40.0% | |
TACATGCGGAATCGTATACA+TGG | + | chr1_3:76159053-76159072 | None:intergenic | 40.0% | |
TAGATGTAAGGTCCCTTCAT+TGG | - | chr1_3:76159126-76159145 | Msa0141340:intron | 40.0% | |
AGATGTAAGGTCCCTTCATT+GGG | - | chr1_3:76159127-76159146 | Msa0141340:intron | 40.0% | |
CAATGACTTTGCCCAATGAA+GGG | + | chr1_3:76159141-76159160 | None:intergenic | 40.0% | |
ACAATGACTTTGCCCAATGA+AGG | + | chr1_3:76159142-76159161 | None:intergenic | 40.0% | |
GTAACAAGAATACAGGAGAG+GGG | + | chr1_3:76159216-76159235 | None:intergenic | 40.0% | |
ATCAGGAATATTGTCAGAGG+TGG | + | chr1_3:76159362-76159381 | None:intergenic | 40.0% | |
GAGTCTTCAAAGCCAAATGT+AGG | + | chr1_3:76159403-76159422 | None:intergenic | 40.0% | |
!!! | TTTTTTCATCTCCGACCCTT+TGG | - | chr1_3:76159641-76159660 | Msa0141340:CDS | 40.0% |
!! | CATTGTAATGGACACACCAA+AGG | + | chr1_3:76159660-76159679 | None:intergenic | 40.0% |
GGTGTGTCCATTACAATGAT+TGG | - | chr1_3:76159662-76159681 | Msa0141340:CDS | 40.0% | |
GAGTCAGCCAATCATTGTAA+TGG | + | chr1_3:76159672-76159691 | None:intergenic | 40.0% | |
CTCAAACCTTGTGTTTGGAT+AGG | + | chr1_3:76159787-76159806 | None:intergenic | 40.0% | |
CTATCCAAACACAAGGTTTG+AGG | - | chr1_3:76159785-76159804 | Msa0141340:intron | 40.0% | |
ACATCCTCAAACCTTGTGTT+TGG | + | chr1_3:76159792-76159811 | None:intergenic | 40.0% | |
AAACACAAGGTTTGAGGATG+TGG | - | chr1_3:76159791-76159810 | Msa0141340:intron | 40.0% | |
! | GCATTTTTCATTGACGCCTT+GGG | - | chr1_3:76159862-76159881 | Msa0141340:intron | 40.0% |
TGTCTATCAAATGCAACCCA+AGG | + | chr1_3:76159881-76159900 | None:intergenic | 40.0% | |
!! | GATTGCTTGTTATTGGTGAC+TGG | - | chr1_3:76160069-76160088 | Msa0141340:intron | 40.0% |
AGATGGATCAGGTTTCATAC+TGG | - | chr1_3:76160150-76160169 | Msa0141340:intron | 40.0% | |
ATCAGGTTTCATACTGGTGA+GGG | - | chr1_3:76160156-76160175 | Msa0141340:intron | 40.0% | |
GAATGTTGGCGGTCATAATT+AGG | - | chr1_3:76160240-76160259 | Msa0141340:intron | 40.0% | |
CAGTTGCTACATCACAATAC+AGG | + | chr1_3:76160420-76160439 | None:intergenic | 40.0% | |
! | ACATTTCTAGAAATCCGGCA+TGG | + | chr1_3:76160515-76160534 | None:intergenic | 40.0% |
CTTACAAAGAGTTGCAAGCA+AGG | - | chr1_3:76160574-76160593 | Msa0141340:intron | 40.0% | |
TAATTACTCCTGTCATGCGA+CGG | - | chr1_3:76160949-76160968 | Msa0141340:intron | 40.0% | |
CAGAGAAGACATGTCGTATC+GGG | + | chr1_3:76154118-76154137 | None:intergenic | 45.0% | |
GAGAAAGAGAGTTACGGTTG+AGG | + | chr1_3:76154177-76154196 | None:intergenic | 45.0% | |
GGTCTTGGAGGAAGAAATTC+GGG | - | chr1_3:76154262-76154281 | Msa0141340:three_prime_UTR | 45.0% | |
! | AAGTGTAGGCACCAAGTTGA+TGG | - | chr1_3:76154846-76154865 | Msa0141340:intron | 45.0% |
! | CTATCCTTTTCGGCCATGTT+TGG | - | chr1_3:76154915-76154934 | Msa0141340:intron | 45.0% |
ACTCAGTCGAGCTTATCTAC+TGG | + | chr1_3:76155131-76155150 | None:intergenic | 45.0% | |
AGATTCTACCTATGACCGAG+AGG | - | chr1_3:76155825-76155844 | Msa0141340:intron | 45.0% | |
GATTCTACCTATGACCGAGA+GGG | - | chr1_3:76155826-76155845 | Msa0141340:intron | 45.0% | |
ATTCTACCTATGACCGAGAG+GGG | - | chr1_3:76155827-76155846 | Msa0141340:intron | 45.0% | |
TTGAGATCCTATGCAGGATC+GGG | - | chr1_3:76156065-76156084 | Msa0141340:intron | 45.0% | |
GTTACAAGATCGTGAATCGG+AGG | - | chr1_3:76156093-76156112 | Msa0141340:intron | 45.0% | |
TGAATCGGAGGATCGTAACA+CGG | - | chr1_3:76156105-76156124 | Msa0141340:intron | 45.0% | |
ATGGGATTACCCACTATTGC+AGG | + | chr1_3:76156490-76156509 | None:intergenic | 45.0% | |
! | ACGCGCTGAGTTTTTGCAAT+CGG | - | chr1_3:76156606-76156625 | Msa0141340:intron | 45.0% |
TGGTTTCCCAACTTCAACCA+TGG | + | chr1_3:76156890-76156909 | None:intergenic | 45.0% | |
!!! | TGGTGTTGTTGGCGACTTTT+TGG | + | chr1_3:76157542-76157561 | None:intergenic | 45.0% |
!! | TCTTACACCACTGGTGTTGT+TGG | + | chr1_3:76157553-76157572 | None:intergenic | 45.0% |
ACTGGTATGGGTAAGGTAAC+TGG | - | chr1_3:76157869-76157888 | Msa0141340:intron | 45.0% | |
CGCTTACAATCATCTGCTTG+TGG | - | chr1_3:76158122-76158141 | Msa0141340:intron | 45.0% | |
CCAACAATCGTGAATGTTGG+AGG | + | chr1_3:76158170-76158189 | None:intergenic | 45.0% | |
CCTCCAACATTCACGATTGT+TGG | - | chr1_3:76158167-76158186 | Msa0141340:intron | 45.0% | |
AGCAGGTCTAATCAAGTCTC+CGG | + | chr1_3:76158270-76158289 | None:intergenic | 45.0% | |
! | AACTCGGTGAACTGAAACAG+TGG | - | chr1_3:76158506-76158525 | Msa0141340:intron | 45.0% |
GTTTGTTTGTTCCTGGCATG+TGG | + | chr1_3:76158555-76158574 | None:intergenic | 45.0% | |
! | TCTACGGGTTTGTTTGTTCC+TGG | + | chr1_3:76158562-76158581 | None:intergenic | 45.0% |
AGGAACAAACAAACCCGTAG+AGG | - | chr1_3:76158561-76158580 | Msa0141340:intron | 45.0% | |
GGAACAAACAAACCCGTAGA+GGG | - | chr1_3:76158562-76158581 | Msa0141340:intron | 45.0% | |
ATCATGCGCGAGAGATGAAA+TGG | - | chr1_3:76158716-76158735 | Msa0141340:intron | 45.0% | |
TGTGATCACCGATCACAAGT+TGG | + | chr1_3:76158815-76158834 | None:intergenic | 45.0% | |
!! | GTAACACGCATAGAGGTACT+TGG | - | chr1_3:76158890-76158909 | Msa0141340:intron | 45.0% |
TGTTTGTAAGATCAGGAGGC+AGG | + | chr1_3:76158941-76158960 | None:intergenic | 45.0% | |
CCTCCTGATCTTACAAACAG+CGG | - | chr1_3:76158942-76158961 | Msa0141340:intron | 45.0% | |
CAACCGCTGTTTGTAAGATC+AGG | + | chr1_3:76158948-76158967 | None:intergenic | 45.0% | |
CTGATCTTACAAACAGCGGT+TGG | - | chr1_3:76158946-76158965 | Msa0141340:intron | 45.0% | |
GGAATATTGTCAGAGGTGGA+TGG | + | chr1_3:76159358-76159377 | None:intergenic | 45.0% | |
! | TAATGGACACACCAAAGGGT+CGG | + | chr1_3:76159655-76159674 | None:intergenic | 45.0% |
TCACACCCTATCCAAACACA+AGG | - | chr1_3:76159778-76159797 | Msa0141340:intron | 45.0% | |
! | GGCATTTTTCATTGACGCCT+TGG | - | chr1_3:76159861-76159880 | Msa0141340:intron | 45.0% |
!! | TCGAATAAGGAGTGCCAACA+TGG | - | chr1_3:76159941-76159960 | Msa0141340:intron | 45.0% |
ATCCATCATGACATTCCCTC+GGG | + | chr1_3:76159972-76159991 | None:intergenic | 45.0% | |
CATCCATCATGACATTCCCT+CGG | + | chr1_3:76159973-76159992 | None:intergenic | 45.0% | |
GTCTACTGGATCAACTCTGA+TGG | + | chr1_3:76160005-76160024 | None:intergenic | 45.0% | |
!! | CTTGTTATTGGTGACTGGCA+AGG | - | chr1_3:76160074-76160093 | Msa0141340:intron | 45.0% |
! | ACCAGAGCTTAGGTTGTAGA+TGG | - | chr1_3:76160133-76160152 | Msa0141340:intron | 45.0% |
TCCATCTACAACCTAAGCTC+TGG | + | chr1_3:76160137-76160156 | None:intergenic | 45.0% | |
! | GCTTAGGTTGTAGATGGATC+AGG | - | chr1_3:76160139-76160158 | Msa0141340:intron | 45.0% |
GATCAGGTTTCATACTGGTG+AGG | - | chr1_3:76160155-76160174 | Msa0141340:intron | 45.0% | |
TCAGGTTTCATACTGGTGAG+GGG | - | chr1_3:76160157-76160176 | Msa0141340:intron | 45.0% | |
!! | ACTGCTGTACTAGGTTGGTT+TGG | - | chr1_3:76160181-76160200 | Msa0141340:intron | 45.0% |
!! | CTGCTGTACTAGGTTGGTTT+GGG | - | chr1_3:76160182-76160201 | Msa0141340:intron | 45.0% |
!! | TGCTGTACTAGGTTGGTTTG+GGG | - | chr1_3:76160183-76160202 | Msa0141340:intron | 45.0% |
!! | TAGGTTGGTTTGGGGGATTA+GGG | - | chr1_3:76160191-76160210 | Msa0141340:intron | 45.0% |
GTGGTAGCTAGACAGAATGT+TGG | - | chr1_3:76160226-76160245 | Msa0141340:intron | 45.0% | |
GTAGCTAGACAGAATGTTGG+CGG | - | chr1_3:76160229-76160248 | Msa0141340:intron | 45.0% | |
CCATGTAGACTTTCTCTAGC+TGG | + | chr1_3:76160614-76160633 | None:intergenic | 45.0% | |
CCAGCTAGAGAAAGTCTACA+TGG | - | chr1_3:76160611-76160630 | Msa0141340:CDS | 45.0% | |
! | CATGGATATGGCACTGAAGA+AGG | - | chr1_3:76160629-76160648 | Msa0141340:CDS | 45.0% |
GATGAAATCGTCAACCCAAC+CGG | - | chr1_3:76160781-76160800 | Msa0141340:intron | 45.0% | |
ACGGTGATTTCTACGGTGGA+GGG | + | chr1_3:76154086-76154105 | None:intergenic | 50.0% | |
CTTCACGGTGATTTCTACGG+TGG | + | chr1_3:76154090-76154109 | None:intergenic | 50.0% | |
TTTGTGAGCAGGTCTGGGAA+CGG | + | chr1_3:76154148-76154167 | None:intergenic | 50.0% | |
ATTCAACCCCTCTCGGTCAT+AGG | + | chr1_3:76155836-76155855 | None:intergenic | 50.0% | |
TGAGATCCTATGCAGGATCG+GGG | - | chr1_3:76156066-76156085 | Msa0141340:intron | 50.0% | |
AAAGAAGGGAGCCCCTAGTA+TGG | + | chr1_3:76157257-76157276 | None:intergenic | 50.0% | |
AAAGTCGCCAACAACACCAG+TGG | - | chr1_3:76157543-76157562 | Msa0141340:intron | 50.0% | |
GTGGAAAAACGAGTGGAAGC+AGG | + | chr1_3:76158287-76158306 | None:intergenic | 50.0% | |
CTGTAAATGGCTCCAAGCAG+TGG | + | chr1_3:76158467-76158486 | None:intergenic | 50.0% | |
AAGCAGAAGAACCACATGCC+AGG | - | chr1_3:76158541-76158560 | Msa0141340:intron | 50.0% | |
TCTCTCGCACCCTACTTTGT+CGG | + | chr1_3:76158639-76158658 | None:intergenic | 50.0% | |
AAGATCAGGAGGCAGGATGT+GGG | + | chr1_3:76158934-76158953 | None:intergenic | 50.0% | |
TAAGATCAGGAGGCAGGATG+TGG | + | chr1_3:76158935-76158954 | None:intergenic | 50.0% | |
CCGCTGTTTGTAAGATCAGG+AGG | + | chr1_3:76158945-76158964 | None:intergenic | 50.0% | |
GAATACAGGAGAGGGGAGAA+GGG | + | chr1_3:76159209-76159228 | None:intergenic | 50.0% | |
AGAATACAGGAGAGGGGAGA+AGG | + | chr1_3:76159210-76159229 | None:intergenic | 50.0% | |
ATCATGACATTCCCTCGGGA+AGG | + | chr1_3:76159968-76159987 | None:intergenic | 50.0% | |
TTCCCGAGGGAATGTCATGA+TGG | - | chr1_3:76159967-76159986 | Msa0141340:intron | 50.0% | |
!! | GAATGTCATGATGGATGCCG+AGG | - | chr1_3:76159976-76159995 | Msa0141340:intron | 50.0% |
ATCAACTCTGATGGCCTCCT+CGG | + | chr1_3:76159996-76160015 | None:intergenic | 50.0% | |
! | GTTATTGGTGACTGGCAAGG+AGG | - | chr1_3:76160077-76160096 | Msa0141340:intron | 50.0% |
TGACTGGCAAGGAGGAACAA+GGG | - | chr1_3:76160085-76160104 | Msa0141340:intron | 50.0% | |
!! | GCTGTACTAGGTTGGTTTGG+GGG | - | chr1_3:76160184-76160203 | Msa0141340:intron | 50.0% |
!! | CTAGGTTGGTTTGGGGGATT+AGG | - | chr1_3:76160190-76160209 | Msa0141340:intron | 50.0% |
TAGAAATCCGGCATGGTGCT+GGG | + | chr1_3:76160508-76160527 | None:intergenic | 50.0% | |
! | TGTATACCGGTCTACCGGTT+GGG | + | chr1_3:76160798-76160817 | None:intergenic | 50.0% |
TTGTATACCGGTCTACCGGT+TGG | + | chr1_3:76160799-76160818 | None:intergenic | 50.0% | |
CCACTTGTATACCGGTCTAC+CGG | + | chr1_3:76160803-76160822 | None:intergenic | 50.0% | |
TCAGCACGCCACTTGTATAC+CGG | + | chr1_3:76160811-76160830 | None:intergenic | 50.0% | |
ATTTCTACGGTGGAGGGTGG+TGG | + | chr1_3:76154080-76154099 | None:intergenic | 55.0% | |
GTGATTTCTACGGTGGAGGG+TGG | + | chr1_3:76154083-76154102 | None:intergenic | 55.0% | |
CACGGTGATTTCTACGGTGG+AGG | + | chr1_3:76154087-76154106 | None:intergenic | 55.0% | |
CGCTCTTTGTGAGCAGGTCT+GGG | + | chr1_3:76154153-76154172 | None:intergenic | 55.0% | |
ACGCTCTTTGTGAGCAGGTC+TGG | + | chr1_3:76154154-76154173 | None:intergenic | 55.0% | |
TGAGGACGCTCTTTGTGAGC+AGG | + | chr1_3:76154159-76154178 | None:intergenic | 55.0% | |
ATCCTATGCAGGATCGGGGA+AGG | - | chr1_3:76156070-76156089 | Msa0141340:intron | 55.0% | |
TCCTATGCAGGATCGGGGAA+GGG | - | chr1_3:76156071-76156090 | Msa0141340:intron | 55.0% | |
AACAAACCCGTAGAGGGAGC+AGG | - | chr1_3:76158568-76158587 | Msa0141340:intron | 55.0% | |
AACACTGCCTGCTCCCTCTA+CGG | + | chr1_3:76158578-76158597 | None:intergenic | 55.0% | |
AACGCAGTCGCCGACAAAGT+AGG | - | chr1_3:76158626-76158645 | Msa0141340:intron | 55.0% | |
ACGCAGTCGCCGACAAAGTA+GGG | - | chr1_3:76158627-76158646 | Msa0141340:intron | 55.0% | |
! | GGGCATCGTAACACGCATAG+AGG | - | chr1_3:76158883-76158902 | Msa0141340:intron | 55.0% |
AGGGGAGAAGGGAGAAGACA+AGG | + | chr1_3:76159198-76159217 | None:intergenic | 55.0% | |
!! | TGTCATGATGGATGCCGAGG+AGG | - | chr1_3:76159979-76159998 | Msa0141340:intron | 55.0% |
GTGACTGGCAAGGAGGAACA+AGG | - | chr1_3:76160084-76160103 | Msa0141340:intron | 55.0% | |
GACTGGCAAGGAGGAACAAG+GGG | - | chr1_3:76160086-76160105 | Msa0141340:intron | 55.0% | |
! | AACAAGGGGTTGGCAGGTCT+TGG | - | chr1_3:76160100-76160119 | Msa0141340:intron | 55.0% |
! | ACAAGGGGTTGGCAGGTCTT+GGG | - | chr1_3:76160101-76160120 | Msa0141340:intron | 55.0% |
GCAGTGCTTCACCAGAGCTT+AGG | - | chr1_3:76160123-76160142 | Msa0141340:intron | 55.0% | |
CTAGAAATCCGGCATGGTGC+TGG | + | chr1_3:76160509-76160528 | None:intergenic | 55.0% | |
! | GGCACTGAAGAAGGAGTTGC+AGG | - | chr1_3:76160638-76160657 | Msa0141340:CDS | 55.0% |
CCGGTAGACCGGTATACAAG+TGG | - | chr1_3:76160800-76160819 | Msa0141340:CDS | 55.0% | |
TCCTGTCATGCGACGGAAGT+TGG | - | chr1_3:76160956-76160975 | Msa0141340:CDS | 55.0% | |
TCCAACTTCCGTCGCATGAC+AGG | + | chr1_3:76160960-76160979 | None:intergenic | 55.0% | |
ACCCTTCCCCGATCCTGCAT+AGG | + | chr1_3:76156075-76156094 | None:intergenic | 60.0% | |
ACACTGCCTGCTCCCTCTAC+GGG | + | chr1_3:76158577-76158596 | None:intergenic | 60.0% | |
TGCCAACATGGACCTTCCCG+AGG | - | chr1_3:76159953-76159972 | Msa0141340:intron | 60.0% | |
GCCAACATGGACCTTCCCGA+GGG | - | chr1_3:76159954-76159973 | Msa0141340:intron | 60.0% | |
TCCCTCGGGAAGGTCCATGT+TGG | + | chr1_3:76159958-76159977 | None:intergenic | 60.0% | |
GGCAAGGAGGAACAAGGGGT+TGG | - | chr1_3:76160090-76160109 | Msa0141340:intron | 60.0% | |
! | AGGAGGAACAAGGGGTTGGC+AGG | - | chr1_3:76160094-76160113 | Msa0141340:intron | 60.0% |
!! | GTGAGGGGCACTGCTGTACT+AGG | - | chr1_3:76160172-76160191 | Msa0141340:intron | 60.0% |
!! | GGGGCACTGCTGTACTAGGT+TGG | - | chr1_3:76160176-76160195 | Msa0141340:intron | 60.0% |
CTTGGTTCCCAGCACCATGC+CGG | - | chr1_3:76160498-76160517 | Msa0141340:intron | 60.0% | |
CGTCAACCCAACCGGTAGAC+CGG | - | chr1_3:76160789-76160808 | Msa0141340:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 76153977 | 76161159 | 76153977 | ID=Msa0141340;Name=Msa0141340 |
chr1_3 | mRNA | 76153977 | 76161159 | 76153977 | ID=Msa0141340-mRNA-1;Parent=Msa0141340;Name=Msa0141340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=149|0.85|0.75|1|1|1|8|316|215 |
chr1_3 | exon | 76153977 | 76154385 | 76153977 | ID=Msa0141340-mRNA-1:exon:26627;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76154477 | 76154576 | 76154477 | ID=Msa0141340-mRNA-1:exon:26626;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76155744 | 76155827 | 76155744 | ID=Msa0141340-mRNA-1:exon:26625;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76159639 | 76159718 | 76159639 | ID=Msa0141340-mRNA-1:exon:26624;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76159821 | 76159868 | 76159821 | ID=Msa0141340-mRNA-1:exon:26623;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76160592 | 76160687 | 76160592 | ID=Msa0141340-mRNA-1:exon:26622;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76160783 | 76160873 | 76160783 | ID=Msa0141340-mRNA-1:exon:26621;Parent=Msa0141340-mRNA-1 |
chr1_3 | exon | 76160955 | 76161159 | 76160955 | ID=Msa0141340-mRNA-1:exon:26620;Parent=Msa0141340-mRNA-1 |
chr1_3 | five_prime_UTR | 76161011 | 76161159 | 76161011 | ID=Msa0141340-mRNA-1:five_prime_utr;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76160955 | 76161010 | 76160955 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76160783 | 76160873 | 76160783 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76160592 | 76160687 | 76160592 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76159821 | 76159868 | 76159821 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76159639 | 76159718 | 76159639 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76155744 | 76155827 | 76155744 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76154477 | 76154576 | 76154477 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | CDS | 76154293 | 76154385 | 76154293 | ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1 |
chr1_3 | three_prime_UTR | 76153977 | 76154292 | 76153977 | ID=Msa0141340-mRNA-1:three_prime_utr;Parent=Msa0141340-mRNA-1 |
Gene Sequence |
Protein sequence |