AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141340 MtrunA17_Chr4g0051081 91.266 229 6 1 1 215 1 229 6.69e-150 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141340 AT3G60360.1 58.079 229 81 2 1 215 1 228 1.18e-91 268

Find 57 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGAGACTTGTTTATTT+TGG 0.187843 1_3:-76154029 Msa0141340:three_prime_UTR
TAAATTACCTCATACAAAAT+TGG 0.225866 1_3:+76154090 None:intergenic
TCATTGTGTTAAATCATAAA+AGG 0.264423 1_3:+76154196 None:intergenic
AAAGCTTCAAAGTGAGAAAA+AGG 0.290672 1_3:-76159820 Msa0141340:intron
ACGCTCTTTGTGAGCAGGTC+TGG 0.296864 1_3:+76160963 None:intergenic
GCACCAAGATTAAAATTATC+AGG 0.330125 1_3:+76161121 None:intergenic
ATGTGAAAGAAGACACTTTA+CGG 0.340011 1_3:-76160783 Msa0141340:CDS
ATATTCCTGATAATATTAAA+AGG 0.347552 1_3:-76155743 Msa0141340:intron
ATTGATGAAGACACAAGATA+TGG 0.356282 1_3:-76159856 Msa0141340:intron
ATGATCAATCAAGTGCAAAT+TGG 0.364827 1_3:+76159677 None:intergenic
CGCTCTTTGTGAGCAGGTCT+GGG 0.369189 1_3:+76160964 None:intergenic
TGTTTCAATCACAGGTACTT+AGG 0.379172 1_3:-76160679 Msa0141340:intron
CTGAAACCACGATGTTTAGT+AGG 0.387112 1_3:+76161078 None:intergenic
AGGTCTTGGAGGAAGAAATT+CGG 0.388099 1_3:-76160853 Msa0141340:CDS
GGTCTTGGAGGAAGAAATTC+GGG 0.397372 1_3:-76160852 Msa0141340:CDS
GGCACTGAAGAAGGAGTTGC+AGG 0.398896 1_3:-76154476 Msa0141340:intron
TCCTGTCATGCGACGGAAGT+TGG 0.426643 1_3:-76154158 Msa0141340:three_prime_UTR
AGAGAAAGTCTACATGGATA+TGG 0.427839 1_3:-76154497 Msa0141340:CDS
TGTGAAAGAAGACACTTTAC+GGG 0.432035 1_3:-76160782 Msa0141340:intron
TGTATACCGGTCTACCGGTT+GGG 0.433095 1_3:+76154319 None:intergenic
CACGGTGATTTCTACGGTGG+AGG 0.441233 1_3:+76161030 None:intergenic
GTTTCAATCACAGGTACTTA+GGG 0.442736 1_3:-76160678 Msa0141340:intron
ATTTCTACGGTGGAGGGTGG+TGG 0.447314 1_3:+76161037 None:intergenic
CAGAGAAGACATGTCGTATC+GGG 0.455443 1_3:+76160999 None:intergenic
GATGAAATCGTCAACCCAAC+CGG 0.458704 1_3:-76154333 Msa0141340:CDS
TCCAACTTCCGTCGCATGAC+AGG 0.462596 1_3:+76154157 None:intergenic
TGAGGACGCTCTTTGTGAGC+AGG 0.462799 1_3:+76160958 None:intergenic
CATGGATATGGCACTGAAGA+AGG 0.470703 1_3:-76154485 Msa0141340:CDS
ATGTTTACTTTGCTGACGAC+AGG 0.476056 1_3:-76159638 Msa0141340:intron
CCATGTAGACTTTCTCTAGC+TGG 0.476669 1_3:+76154503 None:intergenic
AGTGTCTTCTTTCACATGAA+AGG 0.479919 1_3:+76160789 None:intergenic
TTACTTCACGGTGATTTCTA+CGG 0.482839 1_3:+76161024 None:intergenic
CGTCAACCCAACCGGTAGAC+CGG 0.488357 1_3:-76154325 Msa0141340:CDS
CCATTATTATTAGGTCTTGG+AGG 0.503419 1_3:-76160864 Msa0141340:intron
TCAGCACGCCACTTGTATAC+CGG 0.511012 1_3:+76154306 None:intergenic
TTGATGAAGACACAAGATAT+GGG 0.519917 1_3:-76159855 Msa0141340:intron
CCAGCTAGAGAAAGTCTACA+TGG 0.523733 1_3:-76154503 Msa0141340:CDS
GAGAAAGAGAGTTACGGTTG+AGG 0.524326 1_3:+76160940 None:intergenic
TGAAACCACGATGTTTAGTA+GGG 0.527276 1_3:+76161079 None:intergenic
AAGTAAACATGCTTGTTCGC+TGG 0.531696 1_3:+76159651 None:intergenic
TTGTATACCGGTCTACCGGT+TGG 0.532048 1_3:+76154318 None:intergenic
TTGTTTGTCTAAAATTCTGT+TGG 0.539642 1_3:-76154117 Msa0141340:three_prime_UTR
ACGGTGATTTCTACGGTGGA+GGG 0.559484 1_3:+76161031 None:intergenic
CTTACAAAGAGTTGCAAGCA+AGG 0.563371 1_3:-76154540 Msa0141340:CDS
TCAGAGAAGACATGTCGTAT+CGG 0.571231 1_3:+76160998 None:intergenic
GGAATATTGTCAGAGGTGGA+TGG 0.576375 1_3:+76155759 None:intergenic
ATCAGGAATATTGTCAGAGG+TGG 0.582102 1_3:+76155755 None:intergenic
CTTCACGGTGATTTCTACGG+TGG 0.591836 1_3:+76161027 None:intergenic
CCACTTGTATACCGGTCTAC+CGG 0.609261 1_3:+76154314 None:intergenic
TTTGTGAGCAGGTCTGGGAA+CGG 0.611566 1_3:+76160969 None:intergenic
GTGATTTCTACGGTGGAGGG+TGG 0.614851 1_3:+76161034 None:intergenic
AAGTAGTTAGTTACATACAC+TGG 0.632112 1_3:+76160578 None:intergenic
TAATTACTCCTGTCATGCGA+CGG 0.643906 1_3:-76154165 Msa0141340:three_prime_UTR
ATTATCAGGAATATTGTCAG+AGG 0.655324 1_3:+76155752 None:intergenic
TAAAACCCTACTAAACATCG+TGG 0.665068 1_3:-76161084 Msa0141340:five_prime_UTR
CCGGTAGACCGGTATACAAG+TGG 0.669014 1_3:-76154314 Msa0141340:CDS
AAAAGCTGCTAATAGAAACG+AGG 0.712242 1_3:-76160654 Msa0141340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAATTATATAAA+TGG - chr1_3:76156262-76156281 Msa0141340:intron 0.0%
!! TTGTTAAAAAAAATTAATTG+TGG + chr1_3:76156305-76156324 None:intergenic 10.0%
!!! ACATAATATATTTTCTTTTA+TGG - chr1_3:76156408-76156427 Msa0141340:intron 10.0%
!!! CATAATATATTTTCTTTTAT+GGG - chr1_3:76156409-76156428 Msa0141340:intron 10.0%
!! TAATACTAATAATAAAAGAA+GGG + chr1_3:76157271-76157290 None:intergenic 10.0%
!! ATAATACTAATAATAAAAGA+AGG + chr1_3:76157272-76157291 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGAAC+AGG + chr1_3:76158745-76158764 None:intergenic 10.0%
!!! ATTTTTTCTCCATTATTATT+AGG - chr1_3:76154241-76154260 Msa0141340:three_prime_UTR 15.0%
!! TATGTATAAATTGTTAATGT+AGG - chr1_3:76155362-76155381 Msa0141340:intron 15.0%
!! ATTATACTATTAGATTAGAT+TGG - chr1_3:76155562-76155581 Msa0141340:intron 15.0%
!!! ATGATTTCTTTTAATTTGTA+GGG + chr1_3:76155653-76155672 None:intergenic 15.0%
!!! AATGATTTCTTTTAATTTGT+AGG + chr1_3:76155654-76155673 None:intergenic 15.0%
!! AATTAAAAGAAATCATTGTT+CGG - chr1_3:76155657-76155676 Msa0141340:intron 15.0%
!!! TTTTTTTTTTGTGCTTTAAA+TGG - chr1_3:76157709-76157728 Msa0141340:intron 15.0%
!!! TCTATTATTTTTTTTGAAGT+AGG - chr1_3:76158383-76158402 Msa0141340:intron 15.0%
!! ATATTCCTGATAATATTAAA+AGG - chr1_3:76159371-76159390 Msa0141340:intron 15.0%
!!! CTTTTTATAAGTTTTGAGTA+AGG - chr1_3:76154712-76154731 Msa0141340:intron 20.0%
!! TTAGTATATTTACGTAGTTT+AGG - chr1_3:76154813-76154832 Msa0141340:intron 20.0%
!! TAGTATATTTACGTAGTTTA+GGG - chr1_3:76154814-76154833 Msa0141340:intron 20.0%
!!! ATCTTTTCTTATAACAAGTT+TGG - chr1_3:76155515-76155534 Msa0141340:intron 20.0%
!! TGTAAAAATACAACTATAGA+GGG + chr1_3:76155619-76155638 None:intergenic 20.0%
!! TTGTAAAAATACAACTATAG+AGG + chr1_3:76155620-76155639 None:intergenic 20.0%
!! TATACATGAATTTGTAAGAT+TGG + chr1_3:76156145-76156164 None:intergenic 20.0%
!!! GTTTATTGATTAAGTAATTG+TGG + chr1_3:76156330-76156349 None:intergenic 20.0%
!!! TATTTGTTTCTTCACATAAT+TGG - chr1_3:76156973-76156992 Msa0141340:intron 20.0%
!!! ATTTGGGAAATTTTTAGATT+TGG + chr1_3:76157447-76157466 None:intergenic 20.0%
!! AAAAATTTCCCAAATCAATA+CGG - chr1_3:76157452-76157471 Msa0141340:intron 20.0%
!!! GAAACTGATTTAATTAAACA+TGG + chr1_3:76158029-76158048 None:intergenic 20.0%
!! GAAAATCAGATTATAAGTAA+GGG - chr1_3:76158423-76158442 Msa0141340:intron 20.0%
!! AAAATCAGATTATAAGTAAG+GGG - chr1_3:76158424-76158443 Msa0141340:intron 20.0%
!! AATGTGATTTAATTCAAAAC+AGG - chr1_3:76158986-76159005 Msa0141340:intron 20.0%
!! ATGTGATTTAATTCAAAACA+GGG - chr1_3:76158987-76159006 Msa0141340:intron 20.0%
!! CAAAATATGTAATATACATG+CGG + chr1_3:76159067-76159086 None:intergenic 20.0%
!!! CTATTTAGATTTTAGATGTA+AGG - chr1_3:76159114-76159133 Msa0141340:intron 20.0%
!! ATCATCATCTATAAAAATGT+AGG - chr1_3:76159287-76159306 Msa0141340:intron 20.0%
!! TCATCATCTATAAAAATGTA+GGG - chr1_3:76159288-76159307 Msa0141340:intron 20.0%
!!! CTTTACCTTTTAATATTATC+AGG + chr1_3:76159379-76159398 None:intergenic 20.0%
!! TACAATAAATGCTTAGTATT+AGG - chr1_3:76159580-76159599 Msa0141340:intron 20.0%
!! TTTGATAGACAAATTAAAAC+AGG - chr1_3:76159890-76159909 Msa0141340:intron 20.0%
!! TTGATAGACAAATTAAAACA+GGG - chr1_3:76159891-76159910 Msa0141340:intron 20.0%
!! CATGAAAATATGATTCAATA+TGG + chr1_3:76160349-76160368 None:intergenic 20.0%
!!! AAAAAACATTTCTAGAAATC+CGG + chr1_3:76160520-76160539 None:intergenic 20.0%
!!! TTTTTTTTTTTTTCTTGCAC+AGG - chr1_3:76160538-76160557 Msa0141340:intron 20.0%
!! TCATTGTGTTAAATCATAAA+AGG + chr1_3:76160921-76160940 None:intergenic 20.0%
!! TAAATTACCTCATACAAAAT+TGG + chr1_3:76161027-76161046 None:intergenic 20.0%
! AGAAAATAACGTATATGAAG+AGG + chr1_3:76154202-76154221 None:intergenic 25.0%
!!! TTTTTGTTTGTTTCAATCAC+AGG - chr1_3:76154427-76154446 Msa0141340:intron 25.0%
!!! GGATGAGTTTTATTTTAAGA+TGG - chr1_3:76154481-76154500 Msa0141340:CDS 25.0%
! GTTAATTCAAAAACTGTTGA+TGG - chr1_3:76154503-76154522 Msa0141340:CDS 25.0%
!! TAACTACTTTCTATCCTTTT+CGG - chr1_3:76154550-76154569 Msa0141340:CDS 25.0%
!! GTTTTATGATTGTTAGTTGT+TGG - chr1_3:76155185-76155204 Msa0141340:intron 25.0%
! TTCTTATAACAAGTTTGGAT+TGG - chr1_3:76155520-76155539 Msa0141340:intron 25.0%
! TCTTATAACAAGTTTGGATT+GGG - chr1_3:76155521-76155540 Msa0141340:intron 25.0%
! ACTAACTTAAGAACAAACTA+TGG + chr1_3:76155747-76155766 None:intergenic 25.0%
!!! ATATAGTTTTTTCCTACAGT+AGG + chr1_3:76155870-76155889 None:intergenic 25.0%
! AAAAAAAGAGGTCCATATTA+GGG + chr1_3:76156438-76156457 None:intergenic 25.0%
! TAAAAAAAGAGGTCCATATT+AGG + chr1_3:76156439-76156458 None:intergenic 25.0%
!!! TAATATGGACCTCTTTTTTT+AGG - chr1_3:76156438-76156457 Msa0141340:intron 25.0%
!!! AATATGGACCTCTTTTTTTA+GGG - chr1_3:76156439-76156458 Msa0141340:intron 25.0%
! ATGTAAACCAAAAAGGAAAT+GGG + chr1_3:76156508-76156527 None:intergenic 25.0%
! AATGTAAACCAAAAAGGAAA+TGG + chr1_3:76156509-76156528 None:intergenic 25.0%
! TAGAGAGCAGAATATAAAAA+GGG + chr1_3:76156542-76156561 None:intergenic 25.0%
! ATAGAGAGCAGAATATAAAA+AGG + chr1_3:76156543-76156562 None:intergenic 25.0%
! GTGAATGATGAAATTAAAGT+TGG + chr1_3:76156683-76156702 None:intergenic 25.0%
!!! CTTCACTTTTATAAGGATTT+TGG - chr1_3:76156808-76156827 Msa0141340:intron 25.0%
!!! GGATCAAACATTTTTTTTCA+TGG - chr1_3:76156829-76156848 Msa0141340:intron 25.0%
!! ATGGATATCATTGTTATTAC+TGG + chr1_3:76156871-76156890 None:intergenic 25.0%
! AGTAATAACAATGATATCCA+TGG - chr1_3:76156870-76156889 Msa0141340:intron 25.0%
!!! ATGTCGAAGTTTTTTATTGA+AGG - chr1_3:76157009-76157028 Msa0141340:intron 25.0%
!!! TGTCGAAGTTTTTTATTGAA+GGG - chr1_3:76157010-76157029 Msa0141340:intron 25.0%
! TACAATGTGAAATGAAGAAA+TGG - chr1_3:76157120-76157139 Msa0141340:intron 25.0%
! TCATCATCATAAATATGACT+AGG - chr1_3:76157508-76157527 Msa0141340:intron 25.0%
!!! AATTTTTTTTCGTCTACACT+AGG + chr1_3:76157743-76157762 None:intergenic 25.0%
!! AATACAGCAATTTAAAGTGT+AGG - chr1_3:76157909-76157928 Msa0141340:intron 25.0%
! GTTCTTAATTAGATATGTCA+TGG + chr1_3:76157973-76157992 None:intergenic 25.0%
! TATCAATGACAATTAAGAAG+TGG - chr1_3:76157994-76158013 Msa0141340:intron 25.0%
!!! TTTTTTTTGAAGTAGGATGA+TGG - chr1_3:76158390-76158409 Msa0141340:intron 25.0%
!!! TTTTTTTGAAGTAGGATGAT+GGG - chr1_3:76158391-76158410 Msa0141340:intron 25.0%
! CGAAAATCAGATTATAAGTA+AGG - chr1_3:76158422-76158441 Msa0141340:intron 25.0%
!!! TACTCCTTTCTTATTTCTAT+GGG - chr1_3:76158863-76158882 Msa0141340:intron 25.0%
!! CGCATGTATATTACATATTT+TGG - chr1_3:76159065-76159084 Msa0141340:intron 25.0%
! ATAACAAGTAACAAGAATAC+AGG + chr1_3:76159223-76159242 None:intergenic 25.0%
!! ACTAAATAATTCTAGGGATA+TGG - chr1_3:76159490-76159509 Msa0141340:intron 25.0%
! ATAAATGCTTAGTATTAGGA+TGG - chr1_3:76159584-76159603 Msa0141340:intron 25.0%
! TGTTTACGTATATCTTGTTA+TGG - chr1_3:76159840-76159859 Msa0141340:CDS 25.0%
! TAAAACAGGGAAAAATAGAA+TGG - chr1_3:76159904-76159923 Msa0141340:intron 25.0%
! TCCTTATTCGACTTAAATAT+TGG + chr1_3:76159932-76159951 None:intergenic 25.0%
!! AATCATATTTTCATGCTACT+GGG - chr1_3:76160354-76160373 Msa0141340:intron 25.0%
! TGCATATGTAAAGACTAAAA+CGG + chr1_3:76160696-76160715 None:intergenic 25.0%
! TCCATATATGATCAGAAAAA+TGG - chr1_3:76160736-76160755 Msa0141340:intron 25.0%
!!! ACCATTTTTCTGATCATATA+TGG + chr1_3:76160740-76160759 None:intergenic 25.0%
! TATATGATCAGAAAAATGGT+AGG - chr1_3:76160740-76160759 Msa0141340:intron 25.0%
!! TTGTTTGTCTAAAATTCTGT+TGG - chr1_3:76160997-76161016 Msa0141340:exon 25.0%
!! AGGCCTGATAATTTTAATCT+TGG - chr1_3:76153990-76154009 Msa0141340:three_prime_UTR 30.0%
GCACCAAGATTAAAATTATC+AGG + chr1_3:76153996-76154015 None:intergenic 30.0%
!! GATAATTTTAATCTTGGTGC+TGG - chr1_3:76153996-76154015 Msa0141340:three_prime_UTR 30.0%
TCTCCATTATTATTAGGTCT+TGG - chr1_3:76154247-76154266 Msa0141340:three_prime_UTR 30.0%
ATGTGAAAGAAGACACTTTA+CGG - chr1_3:76154331-76154350 Msa0141340:CDS 30.0%
AGTGAAATATTGCAGAGAAA+GGG + chr1_3:76154377-76154396 None:intergenic 30.0%
AAGTGAAATATTGCAGAGAA+AGG + chr1_3:76154378-76154397 None:intergenic 30.0%
AAGTAGTTAGTTACATACAC+TGG + chr1_3:76154539-76154558 None:intergenic 30.0%
!! GCTATTTTCGTAAGATATCT+CGG - chr1_3:76154640-76154659 Msa0141340:intron 30.0%
! CATGTTTGAAGCTTATCTAT+TGG + chr1_3:76154756-76154775 None:intergenic 30.0%
CAATAGATAAGCTTCAAACA+TGG - chr1_3:76154754-76154773 Msa0141340:intron 30.0%
! TGACTACTTTCTATCCTTTT+CGG - chr1_3:76154905-76154924 Msa0141340:intron 30.0%
! TTAAGGTGTTTATCCAAACA+TGG + chr1_3:76154931-76154950 None:intergenic 30.0%
ATGCTATAAGCTGCAAATTA+AGG + chr1_3:76154948-76154967 None:intergenic 30.0%
ATAAAAATCAAGGGTCTGTT+TGG + chr1_3:76155158-76155177 None:intergenic 30.0%
ACTAGCCACATAAAAATCAA+GGG + chr1_3:76155167-76155186 None:intergenic 30.0%
AACTAGCCACATAAAAATCA+AGG + chr1_3:76155168-76155187 None:intergenic 30.0%
!!! GTTGTTGGTTTTTCTTTTGT+AGG - chr1_3:76155200-76155219 Msa0141340:intron 30.0%
! GTTTTTCTTTTGTAGGAATG+AGG - chr1_3:76155207-76155226 Msa0141340:intron 30.0%
ATTGATGAAGACACAAGATA+TGG - chr1_3:76155258-76155277 Msa0141340:intron 30.0%
TTGATGAAGACACAAGATAT+GGG - chr1_3:76155259-76155278 Msa0141340:intron 30.0%
AAAGCTTCAAAGTGAGAAAA+AGG - chr1_3:76155294-76155313 Msa0141340:intron 30.0%
ATGATCAATCAAGTGCAAAT+TGG + chr1_3:76155440-76155459 None:intergenic 30.0%
AAATCATTGTTCGGATTTGA+TGG - chr1_3:76155666-76155685 Msa0141340:intron 30.0%
TTAAGTTAGTTAACTCGATC+AGG - chr1_3:76155757-76155776 Msa0141340:CDS 30.0%
CATGAATTTGTAAGATTGGT+AGG + chr1_3:76156141-76156160 None:intergenic 30.0%
AAAAAAGAGGTCCATATTAG+GGG + chr1_3:76156437-76156456 None:intergenic 30.0%
GCACTAAATGTAAACCAAAA+AGG + chr1_3:76156515-76156534 None:intergenic 30.0%
!! TAAAGTTGGTGTAACAAAGA+GGG + chr1_3:76156669-76156688 None:intergenic 30.0%
!! TTAAAGTTGGTGTAACAAAG+AGG + chr1_3:76156670-76156689 None:intergenic 30.0%
!! AGATGCAATAATTGGTGTTT+TGG + chr1_3:76156752-76156771 None:intergenic 30.0%
AAAGCTAGAGATGCAATAAT+TGG + chr1_3:76156760-76156779 None:intergenic 30.0%
!! AAACGAGCTTCACTTTTATA+AGG - chr1_3:76156801-76156820 Msa0141340:intron 30.0%
! ATCATTGTTATTACTGGAAC+TGG + chr1_3:76156865-76156884 None:intergenic 30.0%
! TTATCTCTGGTCTTCAAAAT+GGG + chr1_3:76156932-76156951 None:intergenic 30.0%
GATAAGCAAACTTCTTCAAT+TGG - chr1_3:76156947-76156966 Msa0141340:intron 30.0%
ACGATAGGTTAAGATTCATA+TGG - chr1_3:76157081-76157100 Msa0141340:intron 30.0%
ATAGGTTAAGATTCATATGG+AGG - chr1_3:76157084-76157103 Msa0141340:intron 30.0%
AATGTGAAATGAAGAAATGG+AGG - chr1_3:76157123-76157142 Msa0141340:intron 30.0%
GAAACAGATTTGTAACCAAA+TGG - chr1_3:76157155-76157174 Msa0141340:intron 30.0%
ATTTGTAACCAAATGGAAAC+TGG - chr1_3:76157162-76157181 Msa0141340:intron 30.0%
!!! TAGTATGGACCTCTTTTTTA+GGG + chr1_3:76157242-76157261 None:intergenic 30.0%
TAAAAAAGAGGTCCATACTA+GGG - chr1_3:76157242-76157261 Msa0141340:intron 30.0%
!! ATGAACTTAGTCTTTCGTTT+TGG + chr1_3:76157364-76157383 None:intergenic 30.0%
! TTATGATGATGACATTGATG+AGG + chr1_3:76157500-76157519 None:intergenic 30.0%
! AGGTTAATTCTGAAGACAAA+TGG + chr1_3:76157616-76157635 None:intergenic 30.0%
GAAAATCAGCTATTCATATG+AGG + chr1_3:76157639-76157658 None:intergenic 30.0%
TATGTGTCTAATTCAGCTTA+TGG + chr1_3:76157671-76157690 None:intergenic 30.0%
ATAAGCTGAATTAGACACAT+AGG - chr1_3:76157670-76157689 Msa0141340:intron 30.0%
TTACCCATACCTATTCTTAT+AGG + chr1_3:76157845-76157864 None:intergenic 30.0%
TATAAGAATAGGTATGGGTA+AGG - chr1_3:76157844-76157863 Msa0141340:intron 30.0%
TTCTTGAATAAGTGTAGTGT+AGG - chr1_3:76158084-76158103 Msa0141340:intron 30.0%
GAAATGATGCAATAAAGACA+AGG + chr1_3:76158240-76158259 None:intergenic 30.0%
TCTTAAGGTCAAATAAGAAG+TGG + chr1_3:76158306-76158325 None:intergenic 30.0%
!!! TTTTTTGAAGTAGGATGATG+GGG - chr1_3:76158392-76158411 Msa0141340:intron 30.0%
AGATTATAAGTAAGGGGTTT+GGG - chr1_3:76158430-76158449 Msa0141340:intron 30.0%
CTGTTCTATTCTTCTGTAAA+TGG + chr1_3:76158480-76158499 None:intergenic 30.0%
TTTACAGAAGAATAGAACAG+AGG - chr1_3:76158480-76158499 Msa0141340:intron 30.0%
! CATATTCTTTTCTTCTCTCA+CGG + chr1_3:76158663-76158682 None:intergenic 30.0%
GAGAAGAAAAGAATATGCTT+TGG - chr1_3:76158666-76158685 Msa0141340:intron 30.0%
!! AGTCAGGTTTTATCGAATAT+GGG + chr1_3:76158788-76158807 None:intergenic 30.0%
CATAGAAATAAGAAAGGAGT+AGG + chr1_3:76158864-76158883 None:intergenic 30.0%
!! CTACTCCTTTCTTATTTCTA+TGG - chr1_3:76158862-76158881 Msa0141340:intron 30.0%
GATGATAAAAAAGTTGACTG+AGG + chr1_3:76159273-76159292 None:intergenic 30.0%
TCTATAAAAATGTAGGGAAG+AGG - chr1_3:76159294-76159313 Msa0141340:intron 30.0%
ATTATCAGGAATATTGTCAG+AGG + chr1_3:76159365-76159384 None:intergenic 30.0%
!!! CAGGCTTCTAAATTTTTTGT+CGG - chr1_3:76159466-76159485 Msa0141340:intron 30.0%
TGTCGGTACTAAATAATTCT+AGG - chr1_3:76159483-76159502 Msa0141340:intron 30.0%
GTCGGTACTAAATAATTCTA+GGG - chr1_3:76159484-76159503 Msa0141340:intron 30.0%
! TGGTCTGTACAGTAATATTT+TGG - chr1_3:76159604-76159623 Msa0141340:intron 30.0%
! TCGCTTTCTGAAAATTTGTT+TGG - chr1_3:76159694-76159713 Msa0141340:CDS 30.0%
! ATTTGTTTGGCTCATATCTT+TGG - chr1_3:76159707-76159726 Msa0141340:intron 30.0%
GCCAATATTTAAGTCGAATA+AGG - chr1_3:76159928-76159947 Msa0141340:intron 30.0%
TTCTTGATGAAATTGTCTAC+TGG + chr1_3:76160019-76160038 None:intergenic 30.0%
GACAATTTCATCAAGAAAGT+AGG - chr1_3:76160022-76160041 Msa0141340:intron 30.0%
ATAATCTAAGTCTGCATTGA+AGG - chr1_3:76160045-76160064 Msa0141340:intron 30.0%
!!! GCTATTAGTTTTCTGCTTTT+TGG - chr1_3:76160323-76160342 Msa0141340:intron 30.0%
! GAATCATATTTTCATGCTAC+TGG - chr1_3:76160353-76160372 Msa0141340:intron 30.0%
CAAGATGAAAAAAGAACGAA+TGG + chr1_3:76160482-76160501 None:intergenic 30.0%
!!! CATTCGTTCTTTTTTCATCT+TGG - chr1_3:76160480-76160499 Msa0141340:intron 30.0%
!!! AGTTGCAGGTATTGATATTT+TGG - chr1_3:76160652-76160671 Msa0141340:CDS 30.0%
GCATATGTAAAGACTAAAAC+GGG + chr1_3:76160695-76160714 None:intergenic 30.0%
! TGGTTATCCAATTTTGTATG+AGG - chr1_3:76161017-76161036 Msa0141340:five_prime_UTR 30.0%
!! CTTGAGAGACTTGTTTATTT+TGG - chr1_3:76161085-76161104 Msa0141340:five_prime_UTR 30.0%
TAAAACCCTACTAAACATCG+TGG - chr1_3:76154030-76154049 Msa0141340:three_prime_UTR 35.0%
TGAAACCACGATGTTTAGTA+GGG + chr1_3:76154038-76154057 None:intergenic 35.0%
TTACTTCACGGTGATTTCTA+CGG + chr1_3:76154093-76154112 None:intergenic 35.0%
CCTCCAAGACCTAATAATAA+TGG + chr1_3:76154253-76154272 None:intergenic 35.0%
CCATTATTATTAGGTCTTGG+AGG - chr1_3:76154250-76154269 Msa0141340:three_prime_UTR 35.0%
AGTGTCTTCTTTCACATGAA+AGG + chr1_3:76154328-76154347 None:intergenic 35.0%
TGTGAAAGAAGACACTTTAC+GGG - chr1_3:76154332-76154351 Msa0141340:CDS 35.0%
TGTTTCAATCACAGGTACTT+AGG - chr1_3:76154435-76154454 Msa0141340:intron 35.0%
GTTTCAATCACAGGTACTTA+GGG - chr1_3:76154436-76154455 Msa0141340:intron 35.0%
AAAAGCTGCTAATAGAAACG+AGG - chr1_3:76154460-76154479 Msa0141340:intron 35.0%
TTTATGAGACATCTCCGAAA+AGG + chr1_3:76154567-76154586 None:intergenic 35.0%
TAAGATATCTCGGCAAGTTT+GGG - chr1_3:76154650-76154669 Msa0141340:intron 35.0%
TAGGGACTAAATTGAAGTGT+AGG - chr1_3:76154832-76154851 Msa0141340:intron 35.0%
! AGCTGTTTCATAAGCTATCT+TGG - chr1_3:76155014-76155033 Msa0141340:intron 35.0%
TTTCATAAGCTATCTTGGTG+AGG - chr1_3:76155019-76155038 Msa0141340:intron 35.0%
! ACAGACCCTTGATTTTTATG+TGG - chr1_3:76155159-76155178 Msa0141340:intron 35.0%
! TAGCTTTTCAACTTTCTGCA+AGG + chr1_3:76155413-76155432 None:intergenic 35.0%
TTGGTCTACTTAAATCTTCG+TGG - chr1_3:76155581-76155600 Msa0141340:intron 35.0%
TGGTCTACTTAAATCTTCGT+GGG - chr1_3:76155582-76155601 Msa0141340:intron 35.0%
ATACAACTATAGAGGGACAA+AGG + chr1_3:76155612-76155631 None:intergenic 35.0%
! AGGCTATTAATGCTGATTGA+TGG - chr1_3:76155777-76155796 Msa0141340:CDS 35.0%
! GGCTATTAATGCTGATTGAT+GGG - chr1_3:76155778-76155797 Msa0141340:CDS 35.0%
TGATCATAACATCCTACTGT+AGG - chr1_3:76155855-76155874 Msa0141340:intron 35.0%
! GATCTCAATTTTGTCTACCT+TGG + chr1_3:76156053-76156072 None:intergenic 35.0%
ACAAAATTGAGATCCTATGC+AGG - chr1_3:76156059-76156078 Msa0141340:intron 35.0%
! TTTTATGGGAACCCCTAATA+TGG - chr1_3:76156423-76156442 Msa0141340:intron 35.0%
CTATTGCAGGTCATTTAACA+AGG + chr1_3:76156477-76156496 None:intergenic 35.0%
TGTTAAATGACCTGCAATAG+TGG - chr1_3:76156477-76156496 Msa0141340:intron 35.0%
GTTAAATGACCTGCAATAGT+GGG - chr1_3:76156478-76156497 Msa0141340:intron 35.0%
ATTCATATGAAGGAGGAAAG+GGG + chr1_3:76156582-76156601 None:intergenic 35.0%
GATTCATATGAAGGAGGAAA+GGG + chr1_3:76156583-76156602 None:intergenic 35.0%
AGATTCATATGAAGGAGGAA+AGG + chr1_3:76156584-76156603 None:intergenic 35.0%
CGTAAAGATTCATATGAAGG+AGG + chr1_3:76156589-76156608 None:intergenic 35.0%
! GAAGCTCGTTTTCTTCTTTA+AGG + chr1_3:76156792-76156811 None:intergenic 35.0%
ATGATATCCATGGTTGAAGT+TGG - chr1_3:76156880-76156899 Msa0141340:intron 35.0%
TGATATCCATGGTTGAAGTT+GGG - chr1_3:76156881-76156900 Msa0141340:intron 35.0%
ACCAATTTCAACAAGTGAAC+AGG - chr1_3:76156906-76156925 Msa0141340:intron 35.0%
! CTTATCTCTGGTCTTCAAAA+TGG + chr1_3:76156933-76156952 None:intergenic 35.0%
! TGAAGAAGTTTGCTTATCTC+TGG + chr1_3:76156945-76156964 None:intergenic 35.0%
TAGAGAGAGAAAGATACGAT+AGG - chr1_3:76157066-76157085 Msa0141340:intron 35.0%
GTTAAGATTCATATGGAGGA+AGG - chr1_3:76157088-76157107 Msa0141340:intron 35.0%
TAACCAAATGGAAACTGGAA+AGG - chr1_3:76157167-76157186 Msa0141340:intron 35.0%
! CTATTGCCTGTCATTTAACA+AGG - chr1_3:76157204-76157223 Msa0141340:intron 35.0%
!!! CTAGTATGGACCTCTTTTTT+AGG + chr1_3:76157243-76157262 None:intergenic 35.0%
CTAAAAAAGAGGTCCATACT+AGG - chr1_3:76157241-76157260 Msa0141340:intron 35.0%
AAAAAAGAGGTCCATACTAG+GGG - chr1_3:76157243-76157262 Msa0141340:intron 35.0%
!! GTGAATGACCGTATTGATTT+GGG + chr1_3:76157463-76157482 None:intergenic 35.0%
!! TGTGAATGACCGTATTGATT+TGG + chr1_3:76157464-76157483 None:intergenic 35.0%
AATCAGCTATTCATATGAGG+AGG + chr1_3:76157636-76157655 None:intergenic 35.0%
AAGTTTGACGTGAAGTTCAT+CGG + chr1_3:76157778-76157797 None:intergenic 35.0%
AGAGCAAACCATTGCAATTA+TGG - chr1_3:76157810-76157829 Msa0141340:intron 35.0%
GTGCAAATCCATAATTGCAA+TGG + chr1_3:76157821-76157840 None:intergenic 35.0%
ATTTGCACGCCTATAAGAAT+AGG - chr1_3:76157833-76157852 Msa0141340:intron 35.0%
ACGCCTATAAGAATAGGTAT+GGG - chr1_3:76157839-76157858 Msa0141340:intron 35.0%
AATCCAACAATCGTGAATGT+TGG + chr1_3:76158173-76158192 None:intergenic 35.0%
TTGCATCATTTCACTAAAGC+CGG - chr1_3:76158248-76158267 Msa0141340:intron 35.0%
ATAAGAAGTGGAAAAACGAG+TGG + chr1_3:76158294-76158313 None:intergenic 35.0%
ACTGTCATTCAAGCATCTTA+AGG + chr1_3:76158321-76158340 None:intergenic 35.0%
AAGATGCTTGAATGACAGTA+AGG - chr1_3:76158322-76158341 Msa0141340:intron 35.0%
AGATGCTTGAATGACAGTAA+GGG - chr1_3:76158323-76158342 Msa0141340:intron 35.0%
GAATGTTCATATCTGAGCAA+TGG - chr1_3:76158357-76158376 Msa0141340:intron 35.0%
CAGATTATAAGTAAGGGGTT+TGG - chr1_3:76158429-76158448 Msa0141340:intron 35.0%
GATTATAAGTAAGGGGTTTG+GGG - chr1_3:76158431-76158450 Msa0141340:intron 35.0%
AATAGAACAGAGGATGAACT+CGG - chr1_3:76158490-76158509 Msa0141340:intron 35.0%
!! CAGTCAGGTTTTATCGAATA+TGG + chr1_3:76158789-76158808 None:intergenic 35.0%
GATGCCCATAGAAATAAGAA+AGG + chr1_3:76158870-76158889 None:intergenic 35.0%
AGTAACAAGAATACAGGAGA+GGG + chr1_3:76159217-76159236 None:intergenic 35.0%
AAGTAACAAGAATACAGGAG+AGG + chr1_3:76159218-76159237 None:intergenic 35.0%
AAAAGGTAAAGCCCTACATT+TGG - chr1_3:76159388-76159407 Msa0141340:intron 35.0%
AGTCTTCAAAGCCAAATGTA+GGG + chr1_3:76159402-76159421 None:intergenic 35.0%
! GATGTTTTCTGTGATTACAC+AGG - chr1_3:76159447-76159466 Msa0141340:intron 35.0%
CGGAGATGAAAAAATTGCAA+TGG + chr1_3:76159635-76159654 None:intergenic 35.0%
!! ATTGTAATGGACACACCAAA+GGG + chr1_3:76159659-76159678 None:intergenic 35.0%
TGATTACTATTGAGGCTTCA+TGG + chr1_3:76159761-76159780 None:intergenic 35.0%
ATAGGGTGTGATTACTATTG+AGG + chr1_3:76159769-76159788 None:intergenic 35.0%
TCAAACCTTGTGTTTGGATA+GGG + chr1_3:76159786-76159805 None:intergenic 35.0%
!! TGAAGGAGATTGCTTGTTAT+TGG - chr1_3:76160062-76160081 Msa0141340:intron 35.0%
ATTAGGGAGATTGAATGTTG+TGG - chr1_3:76160207-76160226 Msa0141340:intron 35.0%
AATGTTGGCGGTCATAATTA+GGG - chr1_3:76160241-76160260 Msa0141340:intron 35.0%
AGAGAAAGTCTACATGGATA+TGG - chr1_3:76160617-76160636 Msa0141340:CDS 35.0%
! ACTAAAACGGGCTCATAATA+AGG + chr1_3:76160683-76160702 None:intergenic 35.0%
CTGAAACCACGATGTTTAGT+AGG + chr1_3:76154039-76154058 None:intergenic 40.0%
! TCGTATCGGGTTTTACTTCA+CGG + chr1_3:76154105-76154124 None:intergenic 40.0%
TCAGAGAAGACATGTCGTAT+CGG + chr1_3:76154119-76154138 None:intergenic 40.0%
GAGGAAGAGAAAGAGAGTTA+CGG + chr1_3:76154183-76154202 None:intergenic 40.0%
AGGTCTTGGAGGAAGAAATT+CGG - chr1_3:76154261-76154280 Msa0141340:three_prime_UTR 40.0%
GTAAGATATCTCGGCAAGTT+TGG - chr1_3:76154649-76154668 Msa0141340:intron 40.0%
TCGGCAAGTTTGGGAAAATA+AGG - chr1_3:76154659-76154678 Msa0141340:intron 40.0%
ACTGATGCTAACCATCAACT+TGG + chr1_3:76154860-76154879 None:intergenic 40.0%
AGGATAGAAAGTAGTCACAC+TGG + chr1_3:76154902-76154921 None:intergenic 40.0%
TTATCCAAACATGGCCGAAA+AGG + chr1_3:76154922-76154941 None:intergenic 40.0%
AAGTAAACATGCTTGTTCGC+TGG + chr1_3:76155466-76155485 None:intergenic 40.0%
ATGTTTACTTTGCTGACGAC+AGG - chr1_3:76155476-76155495 Msa0141340:intron 40.0%
CATTGTTCGGATTTGATGGA+TGG - chr1_3:76155670-76155689 Msa0141340:intron 40.0%
TATGATCATTCAACCCCTCT+CGG + chr1_3:76155843-76155862 None:intergenic 40.0%
TTCTCACAAAGCTGTAACCA+AGG - chr1_3:76156033-76156052 Msa0141340:intron 40.0%
ATTGAGATCCTATGCAGGAT+CGG - chr1_3:76156064-76156083 Msa0141340:intron 40.0%
AGGGTTACAAGATCGTGAAT+CGG - chr1_3:76156090-76156109 Msa0141340:intron 40.0%
TGGGTGAACCCTAAAAAAAG+AGG + chr1_3:76156450-76156469 None:intergenic 40.0%
!!! CTTTTTTTAGGGTTCACCCA+TGG - chr1_3:76156450-76156469 Msa0141340:intron 40.0%
GGTCATTTAACAAGGACCAT+GGG + chr1_3:76156469-76156488 None:intergenic 40.0%
AGGTCATTTAACAAGGACCA+TGG + chr1_3:76156470-76156489 None:intergenic 40.0%
! GGGTAATCCCATTTCCTTTT+TGG - chr1_3:76156498-76156517 Msa0141340:intron 40.0%
TTCATATGAAGGAGGAAAGG+GGG + chr1_3:76156581-76156600 None:intergenic 40.0%
GCGCGTAAAGATTCATATGA+AGG + chr1_3:76156592-76156611 None:intergenic 40.0%
GTAACAAAGAGGGAGTTATC+AGG + chr1_3:76156659-76156678 None:intergenic 40.0%
! GCCTGTTCACTTGTTGAAAT+TGG + chr1_3:76156910-76156929 None:intergenic 40.0%
CTTCCTTTCCAGTTTCCATT+TGG + chr1_3:76157173-76157192 None:intergenic 40.0%
GTTAAATGACAGGCAATAGC+AGG + chr1_3:76157203-76157222 None:intergenic 40.0%
CATGGTCCTTGTTAAATGAC+AGG + chr1_3:76156468-76156487 None:intergenic 40.0%
! CTGTCATTTAACAAGGACCA+TGG - chr1_3:76157211-76157230 Msa0141340:intron 40.0%
CATTTAACAAGGACCATGGA+TGG - chr1_3:76157215-76157234 Msa0141340:intron 40.0%
!!! TCTTTTTTAGGGTCCATCCA+TGG + chr1_3:76157231-76157250 None:intergenic 40.0%
ATGGATGGACCCTAAAAAAG+AGG - chr1_3:76157230-76157249 Msa0141340:intron 40.0%
TGATGACATTGATGAGGATG+AGG + chr1_3:76157494-76157513 None:intergenic 40.0%
ATGAAGACATCTTACACCAC+TGG + chr1_3:76157562-76157581 None:intergenic 40.0%
CAAATGGCTTGAGAATGTGA+AGG + chr1_3:76157600-76157619 None:intergenic 40.0%
GATGAACTTCACGTCAAACT+TGG - chr1_3:76157777-76157796 Msa0141340:intron 40.0%
!! ATTGCAATGGTTTGCTCTGT+GGG + chr1_3:76157808-76157827 None:intergenic 40.0%
!! AATTGCAATGGTTTGCTCTG+TGG + chr1_3:76157809-76157828 None:intergenic 40.0%
CACGCCTATAAGAATAGGTA+TGG - chr1_3:76157838-76157857 Msa0141340:intron 40.0%
ATAGGTATGGGTAAGGTAAC+TGG - chr1_3:76157851-76157870 Msa0141340:intron 40.0%
TATGGGTAAGGTAACTGGTA+TGG - chr1_3:76157856-76157875 Msa0141340:intron 40.0%
ATGGGTAAGGTAACTGGTAT+GGG - chr1_3:76157857-76157876 Msa0141340:intron 40.0%
TAAGGTAACTGGTATGGGTA+AGG - chr1_3:76157862-76157881 Msa0141340:intron 40.0%
TAAGGTAACTGGTACGATAG+TGG - chr1_3:76157880-76157899 Msa0141340:intron 40.0%
GATGCTTGAATGACAGTAAG+GGG - chr1_3:76158324-76158343 Msa0141340:intron 40.0%
GGAAAATACTATCCACTGCT+TGG - chr1_3:76158452-76158471 Msa0141340:intron 40.0%
CCTCGTTATATTGTCAGCAA+TGG + chr1_3:76158602-76158621 None:intergenic 40.0%
CCATTGCTGACAATATAACG+AGG - chr1_3:76158599-76158618 Msa0141340:intron 40.0%
!! GGTTTTATCGAATATGGGAC+AGG + chr1_3:76158783-76158802 None:intergenic 40.0%
!! ATCACAAGTTGGTTACAGTC+AGG + chr1_3:76158804-76158823 None:intergenic 40.0%
GACTGTAACCAACTTGTGAT+CGG - chr1_3:76158804-76158823 Msa0141340:intron 40.0%
TAAGAAAGGAGTAGGATCAC+TGG + chr1_3:76158856-76158875 None:intergenic 40.0%
!! CATAGAGGTACTTGGATTGT+AGG - chr1_3:76158898-76158917 Msa0141340:intron 40.0%
TGATCTTACAAACAGCGGTT+GGG - chr1_3:76158947-76158966 Msa0141340:intron 40.0%
TACATGCGGAATCGTATACA+TGG + chr1_3:76159053-76159072 None:intergenic 40.0%
TAGATGTAAGGTCCCTTCAT+TGG - chr1_3:76159126-76159145 Msa0141340:intron 40.0%
AGATGTAAGGTCCCTTCATT+GGG - chr1_3:76159127-76159146 Msa0141340:intron 40.0%
CAATGACTTTGCCCAATGAA+GGG + chr1_3:76159141-76159160 None:intergenic 40.0%
ACAATGACTTTGCCCAATGA+AGG + chr1_3:76159142-76159161 None:intergenic 40.0%
GTAACAAGAATACAGGAGAG+GGG + chr1_3:76159216-76159235 None:intergenic 40.0%
ATCAGGAATATTGTCAGAGG+TGG + chr1_3:76159362-76159381 None:intergenic 40.0%
GAGTCTTCAAAGCCAAATGT+AGG + chr1_3:76159403-76159422 None:intergenic 40.0%
!!! TTTTTTCATCTCCGACCCTT+TGG - chr1_3:76159641-76159660 Msa0141340:CDS 40.0%
!! CATTGTAATGGACACACCAA+AGG + chr1_3:76159660-76159679 None:intergenic 40.0%
GGTGTGTCCATTACAATGAT+TGG - chr1_3:76159662-76159681 Msa0141340:CDS 40.0%
GAGTCAGCCAATCATTGTAA+TGG + chr1_3:76159672-76159691 None:intergenic 40.0%
CTCAAACCTTGTGTTTGGAT+AGG + chr1_3:76159787-76159806 None:intergenic 40.0%
CTATCCAAACACAAGGTTTG+AGG - chr1_3:76159785-76159804 Msa0141340:intron 40.0%
ACATCCTCAAACCTTGTGTT+TGG + chr1_3:76159792-76159811 None:intergenic 40.0%
AAACACAAGGTTTGAGGATG+TGG - chr1_3:76159791-76159810 Msa0141340:intron 40.0%
! GCATTTTTCATTGACGCCTT+GGG - chr1_3:76159862-76159881 Msa0141340:intron 40.0%
TGTCTATCAAATGCAACCCA+AGG + chr1_3:76159881-76159900 None:intergenic 40.0%
!! GATTGCTTGTTATTGGTGAC+TGG - chr1_3:76160069-76160088 Msa0141340:intron 40.0%
AGATGGATCAGGTTTCATAC+TGG - chr1_3:76160150-76160169 Msa0141340:intron 40.0%
ATCAGGTTTCATACTGGTGA+GGG - chr1_3:76160156-76160175 Msa0141340:intron 40.0%
GAATGTTGGCGGTCATAATT+AGG - chr1_3:76160240-76160259 Msa0141340:intron 40.0%
CAGTTGCTACATCACAATAC+AGG + chr1_3:76160420-76160439 None:intergenic 40.0%
! ACATTTCTAGAAATCCGGCA+TGG + chr1_3:76160515-76160534 None:intergenic 40.0%
CTTACAAAGAGTTGCAAGCA+AGG - chr1_3:76160574-76160593 Msa0141340:intron 40.0%
TAATTACTCCTGTCATGCGA+CGG - chr1_3:76160949-76160968 Msa0141340:intron 40.0%
CAGAGAAGACATGTCGTATC+GGG + chr1_3:76154118-76154137 None:intergenic 45.0%
GAGAAAGAGAGTTACGGTTG+AGG + chr1_3:76154177-76154196 None:intergenic 45.0%
GGTCTTGGAGGAAGAAATTC+GGG - chr1_3:76154262-76154281 Msa0141340:three_prime_UTR 45.0%
! AAGTGTAGGCACCAAGTTGA+TGG - chr1_3:76154846-76154865 Msa0141340:intron 45.0%
! CTATCCTTTTCGGCCATGTT+TGG - chr1_3:76154915-76154934 Msa0141340:intron 45.0%
ACTCAGTCGAGCTTATCTAC+TGG + chr1_3:76155131-76155150 None:intergenic 45.0%
AGATTCTACCTATGACCGAG+AGG - chr1_3:76155825-76155844 Msa0141340:intron 45.0%
GATTCTACCTATGACCGAGA+GGG - chr1_3:76155826-76155845 Msa0141340:intron 45.0%
ATTCTACCTATGACCGAGAG+GGG - chr1_3:76155827-76155846 Msa0141340:intron 45.0%
TTGAGATCCTATGCAGGATC+GGG - chr1_3:76156065-76156084 Msa0141340:intron 45.0%
GTTACAAGATCGTGAATCGG+AGG - chr1_3:76156093-76156112 Msa0141340:intron 45.0%
TGAATCGGAGGATCGTAACA+CGG - chr1_3:76156105-76156124 Msa0141340:intron 45.0%
ATGGGATTACCCACTATTGC+AGG + chr1_3:76156490-76156509 None:intergenic 45.0%
! ACGCGCTGAGTTTTTGCAAT+CGG - chr1_3:76156606-76156625 Msa0141340:intron 45.0%
TGGTTTCCCAACTTCAACCA+TGG + chr1_3:76156890-76156909 None:intergenic 45.0%
!!! TGGTGTTGTTGGCGACTTTT+TGG + chr1_3:76157542-76157561 None:intergenic 45.0%
!! TCTTACACCACTGGTGTTGT+TGG + chr1_3:76157553-76157572 None:intergenic 45.0%
ACTGGTATGGGTAAGGTAAC+TGG - chr1_3:76157869-76157888 Msa0141340:intron 45.0%
CGCTTACAATCATCTGCTTG+TGG - chr1_3:76158122-76158141 Msa0141340:intron 45.0%
CCAACAATCGTGAATGTTGG+AGG + chr1_3:76158170-76158189 None:intergenic 45.0%
CCTCCAACATTCACGATTGT+TGG - chr1_3:76158167-76158186 Msa0141340:intron 45.0%
AGCAGGTCTAATCAAGTCTC+CGG + chr1_3:76158270-76158289 None:intergenic 45.0%
! AACTCGGTGAACTGAAACAG+TGG - chr1_3:76158506-76158525 Msa0141340:intron 45.0%
GTTTGTTTGTTCCTGGCATG+TGG + chr1_3:76158555-76158574 None:intergenic 45.0%
! TCTACGGGTTTGTTTGTTCC+TGG + chr1_3:76158562-76158581 None:intergenic 45.0%
AGGAACAAACAAACCCGTAG+AGG - chr1_3:76158561-76158580 Msa0141340:intron 45.0%
GGAACAAACAAACCCGTAGA+GGG - chr1_3:76158562-76158581 Msa0141340:intron 45.0%
ATCATGCGCGAGAGATGAAA+TGG - chr1_3:76158716-76158735 Msa0141340:intron 45.0%
TGTGATCACCGATCACAAGT+TGG + chr1_3:76158815-76158834 None:intergenic 45.0%
!! GTAACACGCATAGAGGTACT+TGG - chr1_3:76158890-76158909 Msa0141340:intron 45.0%
TGTTTGTAAGATCAGGAGGC+AGG + chr1_3:76158941-76158960 None:intergenic 45.0%
CCTCCTGATCTTACAAACAG+CGG - chr1_3:76158942-76158961 Msa0141340:intron 45.0%
CAACCGCTGTTTGTAAGATC+AGG + chr1_3:76158948-76158967 None:intergenic 45.0%
CTGATCTTACAAACAGCGGT+TGG - chr1_3:76158946-76158965 Msa0141340:intron 45.0%
GGAATATTGTCAGAGGTGGA+TGG + chr1_3:76159358-76159377 None:intergenic 45.0%
! TAATGGACACACCAAAGGGT+CGG + chr1_3:76159655-76159674 None:intergenic 45.0%
TCACACCCTATCCAAACACA+AGG - chr1_3:76159778-76159797 Msa0141340:intron 45.0%
! GGCATTTTTCATTGACGCCT+TGG - chr1_3:76159861-76159880 Msa0141340:intron 45.0%
!! TCGAATAAGGAGTGCCAACA+TGG - chr1_3:76159941-76159960 Msa0141340:intron 45.0%
ATCCATCATGACATTCCCTC+GGG + chr1_3:76159972-76159991 None:intergenic 45.0%
CATCCATCATGACATTCCCT+CGG + chr1_3:76159973-76159992 None:intergenic 45.0%
GTCTACTGGATCAACTCTGA+TGG + chr1_3:76160005-76160024 None:intergenic 45.0%
!! CTTGTTATTGGTGACTGGCA+AGG - chr1_3:76160074-76160093 Msa0141340:intron 45.0%
! ACCAGAGCTTAGGTTGTAGA+TGG - chr1_3:76160133-76160152 Msa0141340:intron 45.0%
TCCATCTACAACCTAAGCTC+TGG + chr1_3:76160137-76160156 None:intergenic 45.0%
! GCTTAGGTTGTAGATGGATC+AGG - chr1_3:76160139-76160158 Msa0141340:intron 45.0%
GATCAGGTTTCATACTGGTG+AGG - chr1_3:76160155-76160174 Msa0141340:intron 45.0%
TCAGGTTTCATACTGGTGAG+GGG - chr1_3:76160157-76160176 Msa0141340:intron 45.0%
!! ACTGCTGTACTAGGTTGGTT+TGG - chr1_3:76160181-76160200 Msa0141340:intron 45.0%
!! CTGCTGTACTAGGTTGGTTT+GGG - chr1_3:76160182-76160201 Msa0141340:intron 45.0%
!! TGCTGTACTAGGTTGGTTTG+GGG - chr1_3:76160183-76160202 Msa0141340:intron 45.0%
!! TAGGTTGGTTTGGGGGATTA+GGG - chr1_3:76160191-76160210 Msa0141340:intron 45.0%
GTGGTAGCTAGACAGAATGT+TGG - chr1_3:76160226-76160245 Msa0141340:intron 45.0%
GTAGCTAGACAGAATGTTGG+CGG - chr1_3:76160229-76160248 Msa0141340:intron 45.0%
CCATGTAGACTTTCTCTAGC+TGG + chr1_3:76160614-76160633 None:intergenic 45.0%
CCAGCTAGAGAAAGTCTACA+TGG - chr1_3:76160611-76160630 Msa0141340:CDS 45.0%
! CATGGATATGGCACTGAAGA+AGG - chr1_3:76160629-76160648 Msa0141340:CDS 45.0%
GATGAAATCGTCAACCCAAC+CGG - chr1_3:76160781-76160800 Msa0141340:intron 45.0%
ACGGTGATTTCTACGGTGGA+GGG + chr1_3:76154086-76154105 None:intergenic 50.0%
CTTCACGGTGATTTCTACGG+TGG + chr1_3:76154090-76154109 None:intergenic 50.0%
TTTGTGAGCAGGTCTGGGAA+CGG + chr1_3:76154148-76154167 None:intergenic 50.0%
ATTCAACCCCTCTCGGTCAT+AGG + chr1_3:76155836-76155855 None:intergenic 50.0%
TGAGATCCTATGCAGGATCG+GGG - chr1_3:76156066-76156085 Msa0141340:intron 50.0%
AAAGAAGGGAGCCCCTAGTA+TGG + chr1_3:76157257-76157276 None:intergenic 50.0%
AAAGTCGCCAACAACACCAG+TGG - chr1_3:76157543-76157562 Msa0141340:intron 50.0%
GTGGAAAAACGAGTGGAAGC+AGG + chr1_3:76158287-76158306 None:intergenic 50.0%
CTGTAAATGGCTCCAAGCAG+TGG + chr1_3:76158467-76158486 None:intergenic 50.0%
AAGCAGAAGAACCACATGCC+AGG - chr1_3:76158541-76158560 Msa0141340:intron 50.0%
TCTCTCGCACCCTACTTTGT+CGG + chr1_3:76158639-76158658 None:intergenic 50.0%
AAGATCAGGAGGCAGGATGT+GGG + chr1_3:76158934-76158953 None:intergenic 50.0%
TAAGATCAGGAGGCAGGATG+TGG + chr1_3:76158935-76158954 None:intergenic 50.0%
CCGCTGTTTGTAAGATCAGG+AGG + chr1_3:76158945-76158964 None:intergenic 50.0%
GAATACAGGAGAGGGGAGAA+GGG + chr1_3:76159209-76159228 None:intergenic 50.0%
AGAATACAGGAGAGGGGAGA+AGG + chr1_3:76159210-76159229 None:intergenic 50.0%
ATCATGACATTCCCTCGGGA+AGG + chr1_3:76159968-76159987 None:intergenic 50.0%
TTCCCGAGGGAATGTCATGA+TGG - chr1_3:76159967-76159986 Msa0141340:intron 50.0%
!! GAATGTCATGATGGATGCCG+AGG - chr1_3:76159976-76159995 Msa0141340:intron 50.0%
ATCAACTCTGATGGCCTCCT+CGG + chr1_3:76159996-76160015 None:intergenic 50.0%
! GTTATTGGTGACTGGCAAGG+AGG - chr1_3:76160077-76160096 Msa0141340:intron 50.0%
TGACTGGCAAGGAGGAACAA+GGG - chr1_3:76160085-76160104 Msa0141340:intron 50.0%
!! GCTGTACTAGGTTGGTTTGG+GGG - chr1_3:76160184-76160203 Msa0141340:intron 50.0%
!! CTAGGTTGGTTTGGGGGATT+AGG - chr1_3:76160190-76160209 Msa0141340:intron 50.0%
TAGAAATCCGGCATGGTGCT+GGG + chr1_3:76160508-76160527 None:intergenic 50.0%
! TGTATACCGGTCTACCGGTT+GGG + chr1_3:76160798-76160817 None:intergenic 50.0%
TTGTATACCGGTCTACCGGT+TGG + chr1_3:76160799-76160818 None:intergenic 50.0%
CCACTTGTATACCGGTCTAC+CGG + chr1_3:76160803-76160822 None:intergenic 50.0%
TCAGCACGCCACTTGTATAC+CGG + chr1_3:76160811-76160830 None:intergenic 50.0%
ATTTCTACGGTGGAGGGTGG+TGG + chr1_3:76154080-76154099 None:intergenic 55.0%
GTGATTTCTACGGTGGAGGG+TGG + chr1_3:76154083-76154102 None:intergenic 55.0%
CACGGTGATTTCTACGGTGG+AGG + chr1_3:76154087-76154106 None:intergenic 55.0%
CGCTCTTTGTGAGCAGGTCT+GGG + chr1_3:76154153-76154172 None:intergenic 55.0%
ACGCTCTTTGTGAGCAGGTC+TGG + chr1_3:76154154-76154173 None:intergenic 55.0%
TGAGGACGCTCTTTGTGAGC+AGG + chr1_3:76154159-76154178 None:intergenic 55.0%
ATCCTATGCAGGATCGGGGA+AGG - chr1_3:76156070-76156089 Msa0141340:intron 55.0%
TCCTATGCAGGATCGGGGAA+GGG - chr1_3:76156071-76156090 Msa0141340:intron 55.0%
AACAAACCCGTAGAGGGAGC+AGG - chr1_3:76158568-76158587 Msa0141340:intron 55.0%
AACACTGCCTGCTCCCTCTA+CGG + chr1_3:76158578-76158597 None:intergenic 55.0%
AACGCAGTCGCCGACAAAGT+AGG - chr1_3:76158626-76158645 Msa0141340:intron 55.0%
ACGCAGTCGCCGACAAAGTA+GGG - chr1_3:76158627-76158646 Msa0141340:intron 55.0%
! GGGCATCGTAACACGCATAG+AGG - chr1_3:76158883-76158902 Msa0141340:intron 55.0%
AGGGGAGAAGGGAGAAGACA+AGG + chr1_3:76159198-76159217 None:intergenic 55.0%
!! TGTCATGATGGATGCCGAGG+AGG - chr1_3:76159979-76159998 Msa0141340:intron 55.0%
GTGACTGGCAAGGAGGAACA+AGG - chr1_3:76160084-76160103 Msa0141340:intron 55.0%
GACTGGCAAGGAGGAACAAG+GGG - chr1_3:76160086-76160105 Msa0141340:intron 55.0%
! AACAAGGGGTTGGCAGGTCT+TGG - chr1_3:76160100-76160119 Msa0141340:intron 55.0%
! ACAAGGGGTTGGCAGGTCTT+GGG - chr1_3:76160101-76160120 Msa0141340:intron 55.0%
GCAGTGCTTCACCAGAGCTT+AGG - chr1_3:76160123-76160142 Msa0141340:intron 55.0%
CTAGAAATCCGGCATGGTGC+TGG + chr1_3:76160509-76160528 None:intergenic 55.0%
! GGCACTGAAGAAGGAGTTGC+AGG - chr1_3:76160638-76160657 Msa0141340:CDS 55.0%
CCGGTAGACCGGTATACAAG+TGG - chr1_3:76160800-76160819 Msa0141340:CDS 55.0%
TCCTGTCATGCGACGGAAGT+TGG - chr1_3:76160956-76160975 Msa0141340:CDS 55.0%
TCCAACTTCCGTCGCATGAC+AGG + chr1_3:76160960-76160979 None:intergenic 55.0%
ACCCTTCCCCGATCCTGCAT+AGG + chr1_3:76156075-76156094 None:intergenic 60.0%
ACACTGCCTGCTCCCTCTAC+GGG + chr1_3:76158577-76158596 None:intergenic 60.0%
TGCCAACATGGACCTTCCCG+AGG - chr1_3:76159953-76159972 Msa0141340:intron 60.0%
GCCAACATGGACCTTCCCGA+GGG - chr1_3:76159954-76159973 Msa0141340:intron 60.0%
TCCCTCGGGAAGGTCCATGT+TGG + chr1_3:76159958-76159977 None:intergenic 60.0%
GGCAAGGAGGAACAAGGGGT+TGG - chr1_3:76160090-76160109 Msa0141340:intron 60.0%
! AGGAGGAACAAGGGGTTGGC+AGG - chr1_3:76160094-76160113 Msa0141340:intron 60.0%
!! GTGAGGGGCACTGCTGTACT+AGG - chr1_3:76160172-76160191 Msa0141340:intron 60.0%
!! GGGGCACTGCTGTACTAGGT+TGG - chr1_3:76160176-76160195 Msa0141340:intron 60.0%
CTTGGTTCCCAGCACCATGC+CGG - chr1_3:76160498-76160517 Msa0141340:intron 60.0%
CGTCAACCCAACCGGTAGAC+CGG - chr1_3:76160789-76160808 Msa0141340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 76153977 76161159 76153977 ID=Msa0141340;Name=Msa0141340
chr1_3 mRNA 76153977 76161159 76153977 ID=Msa0141340-mRNA-1;Parent=Msa0141340;Name=Msa0141340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=149|0.85|0.75|1|1|1|8|316|215
chr1_3 exon 76153977 76154385 76153977 ID=Msa0141340-mRNA-1:exon:26627;Parent=Msa0141340-mRNA-1
chr1_3 exon 76154477 76154576 76154477 ID=Msa0141340-mRNA-1:exon:26626;Parent=Msa0141340-mRNA-1
chr1_3 exon 76155744 76155827 76155744 ID=Msa0141340-mRNA-1:exon:26625;Parent=Msa0141340-mRNA-1
chr1_3 exon 76159639 76159718 76159639 ID=Msa0141340-mRNA-1:exon:26624;Parent=Msa0141340-mRNA-1
chr1_3 exon 76159821 76159868 76159821 ID=Msa0141340-mRNA-1:exon:26623;Parent=Msa0141340-mRNA-1
chr1_3 exon 76160592 76160687 76160592 ID=Msa0141340-mRNA-1:exon:26622;Parent=Msa0141340-mRNA-1
chr1_3 exon 76160783 76160873 76160783 ID=Msa0141340-mRNA-1:exon:26621;Parent=Msa0141340-mRNA-1
chr1_3 exon 76160955 76161159 76160955 ID=Msa0141340-mRNA-1:exon:26620;Parent=Msa0141340-mRNA-1
chr1_3 five_prime_UTR 76161011 76161159 76161011 ID=Msa0141340-mRNA-1:five_prime_utr;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76160955 76161010 76160955 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76160783 76160873 76160783 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76160592 76160687 76160592 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76159821 76159868 76159821 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76159639 76159718 76159639 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76155744 76155827 76155744 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76154477 76154576 76154477 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 CDS 76154293 76154385 76154293 ID=Msa0141340-mRNA-1:cds;Parent=Msa0141340-mRNA-1
chr1_3 three_prime_UTR 76153977 76154292 76153977 ID=Msa0141340-mRNA-1:three_prime_utr;Parent=Msa0141340-mRNA-1
Gene Sequence

>Msa0141340

ATGTCTTCTCTGAGAAACGCCGTTCCCAGACCTGCTCACAAAGAGCGTCCTCAACCGTCTTGGAGGAAGAAATTCGGGATACTCGAAAAGCACAAAGACTATGTCGAACGTGCTAAAGCCTTTCATGTGAAAGAAGACACTTTACGGGTACTTAGGGAAAAAGCTGCTAATAGAAACGAGGATGAGTTTTATTTTAAGATGGTTAATTCAAAAACTGTTGATGGAGTTCATAGACCAGTGTATACACAAGATATGGGATATGTTCTTCAAAAGCTTCAAAGTGAGAAAAAGAAAGTTGAAAAGCTATCTGCCAATTTGCACTTGATTGATCATAAGCCAGCGAACAAGCATGTTTACTTTGCTGACGACAGGGAAGAGGCTAAAGAGTTAAAGCAACAACTGTCAAAAAGAAAAGTTCCATCCACCTCTGACAATATTCCTGATAATATTAAAAGGAAAACAGAACGATCTTACAAAGAGTTGCAAGCAAGGAAAGCTAGAGTCAGCCAGCTAGAGAAAGTCTACATGGATATGGCACTGAAGAAGGAGTTGCAGAAAAATGGTAGGAAGCGCAAACTTCGCGAAGATGAAATCGTCAACCCAACCGGTAGACCGGTATACAAGTGGCGTGCTGAAAGAAAGCGCTGA

Protein sequence

>Msa0141340

MSSLRNAVPRPAHKERPQPSWRKKFGILEKHKDYVERAKAFHVKEDTLRVLREKAANRNEDEFYFKMVNSKTVDGVHRPVYTQDMGYVLQKLQSEKKKVEKLSANLHLIDHKPANKHVYFADDREEAKELKQQLSKRKVPSTSDNIPDNIKRKTERSYKELQARKARVSQLEKVYMDMALKKELQKNGRKRKLREDEIVNPTGRPVYKWRAERKR*