Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708610 | XP_003592080.1 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 2.90e-124 | 358 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708610 | G7IBX7 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 1.39e-124 | 358 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0025730 | Msa0708610 | 0.808626 | 2.824286e-50 | -8.615850e-47 |
Msa0032580 | Msa0708610 | 0.803380 | 3.583225e-49 | -8.615850e-47 |
Msa0043660 | Msa0708610 | 0.817302 | 3.538296e-52 | -8.615850e-47 |
Msa0047160 | Msa0708610 | 0.814747 | 1.316161e-51 | -8.615850e-47 |
Msa0054440 | Msa0708610 | 0.810536 | 1.097823e-50 | -8.615850e-47 |
Msa0054930 | Msa0708610 | 0.803017 | 4.260017e-49 | -8.615850e-47 |
Msa0073480 | Msa0708610 | 0.801632 | 8.215678e-49 | -8.615850e-47 |
Msa0086180 | Msa0708610 | 0.830962 | 2.185849e-55 | -8.615850e-47 |
Msa0094470 | Msa0708610 | 0.824726 | 6.904348e-54 | -8.615850e-47 |
Msa0605000 | Msa0708610 | 0.803977 | 2.694364e-49 | -8.615850e-47 |
Msa0685140 | Msa0708610 | 0.808228 | 3.433711e-50 | -8.615850e-47 |
Msa0689260 | Msa0708610 | 0.809711 | 1.653259e-50 | -8.615850e-47 |
Msa0691290 | Msa0708610 | 0.822775 | 1.977936e-53 | -8.615850e-47 |
Msa0691900 | Msa0708610 | 0.828753 | 7.543572e-55 | -8.615850e-47 |
Msa0698060 | Msa0708610 | 0.814528 | 1.471347e-51 | -8.615850e-47 |
Msa0708610 | Msa0711780 | 0.814610 | 1.411695e-51 | -8.615850e-47 |
Msa0708610 | Msa0715650 | 0.818200 | 2.219246e-52 | -8.615850e-47 |
Msa0708610 | Msa0772480 | 0.815101 | 1.098698e-51 | -8.615850e-47 |
Msa0708610 | Msa0790850 | 0.804878 | 1.748258e-49 | -8.615850e-47 |
Msa0708610 | Msa0794670 | 0.811515 | 6.736473e-51 | -8.615850e-47 |
Msa0708610 | Msa0798440 | 0.827127 | 1.857545e-54 | -8.615850e-47 |
Msa0708610 | Msa0802410 | 0.802400 | 5.711873e-49 | -8.615850e-47 |
Msa0708610 | Msa0830540 | 0.811037 | 8.551690e-51 | -8.615850e-47 |
Msa0708610 | Msa0945440 | 0.808283 | 3.342327e-50 | -8.615850e-47 |
Msa0708610 | Msa0970030 | 0.817993 | 2.471491e-52 | -8.615850e-47 |
Msa0708610 | Msa0989540 | 0.821098 | 4.837515e-53 | -8.615850e-47 |
Msa0708610 | Msa1013400 | 0.803079 | 4.136935e-49 | -8.615850e-47 |
Msa0708610 | Msa1014420 | 0.820138 | 8.034613e-53 | -8.615850e-47 |
Msa0708610 | Msa1055410 | 0.815229 | 1.028650e-51 | -8.615850e-47 |
Msa0708610 | Msa1084470 | 0.805478 | 1.309562e-49 | -8.615850e-47 |
Msa0708610 | Msa1104140 | 0.812441 | 4.232286e-51 | -8.615850e-47 |
Msa0708610 | Msa1119200 | 0.803397 | 3.555109e-49 | -8.615850e-47 |
Msa0708610 | Msa1121440 | 0.804865 | 1.759847e-49 | -8.615850e-47 |
Msa0708610 | Msa1137700 | 0.805753 | 1.146138e-49 | -8.615850e-47 |
Msa0708610 | Msa1209260 | 0.803607 | 3.215290e-49 | -8.615850e-47 |
Msa0708610 | Msa1209760 | 0.809280 | 2.046009e-50 | -8.615850e-47 |
Msa0708610 | Msa1218600 | 0.812898 | 3.361926e-51 | -8.615850e-47 |
Msa0708610 | Msa1237940 | 0.806765 | 7.017361e-50 | -8.615850e-47 |
Msa0708610 | Msa1265630 | 0.811970 | 5.364039e-51 | -8.615850e-47 |
Msa0708610 | Msa1294070 | 0.801822 | 7.512342e-49 | -8.615850e-47 |
Msa0708610 | Msa1355700 | 0.806952 | 6.405136e-50 | -8.615850e-47 |
Msa0708610 | Msa1356440 | 0.820720 | 5.908491e-53 | -8.615850e-47 |
Msa0708610 | Msa1358250 | 0.813835 | 2.092903e-51 | -8.615850e-47 |
Msa0708610 | Msa1394290 | 0.838507 | 2.760521e-57 | -8.615850e-47 |
Msa0708610 | Msa1444310 | 0.826574 | 2.517535e-54 | -8.615850e-47 |
Msa0708610 | Msa1457920 | 0.825695 | 4.075072e-54 | -8.615850e-47 |
Msa0137550 | Msa0708610 | 0.821070 | 4.908609e-53 | -8.615850e-47 |
Msa0141340 | Msa0708610 | 0.819672 | 1.026988e-52 | -8.615850e-47 |
Msa0182030 | Msa0708610 | 0.981649 | 4.174794e-153 | -8.615850e-47 |
Msa0182120 | Msa0708610 | 0.909652 | 4.494656e-82 | -8.615850e-47 |
Msa0189300 | Msa0708610 | 0.801362 | 9.330642e-49 | -8.615850e-47 |
Msa0226470 | Msa0708610 | 0.810904 | 9.139320e-51 | -8.615850e-47 |
Msa0227400 | Msa0708610 | 0.814297 | 1.655619e-51 | -8.615850e-47 |
Msa0231660 | Msa0708610 | 0.808862 | 2.513851e-50 | -8.615850e-47 |
Msa0385580 | Msa0708610 | 0.817339 | 3.471592e-52 | -8.615850e-47 |
Msa0397540 | Msa0708610 | 0.801046 | 1.083126e-48 | -8.615850e-47 |
Msa0422400 | Msa0708610 | 0.800579 | 1.349091e-48 | -8.615850e-47 |
Msa0447220 | Msa0708610 | 0.804985 | 1.660333e-49 | -8.615850e-47 |
Msa0482130 | Msa0708610 | 0.800003 | 1.767248e-48 | -8.615850e-47 |
Msa0262310 | Msa0708610 | 0.800052 | 1.726719e-48 | -8.615850e-47 |
Msa0337650 | Msa0708610 | 0.802437 | 5.613009e-49 | -8.615850e-47 |
Msa0542090 | Msa0708610 | 0.815499 | 8.958243e-52 | -8.615850e-47 |
Msa0542130 | Msa0708610 | 0.817679 | 2.909941e-52 | -8.615850e-47 |
Msa0558810 | Msa0708610 | 0.819798 | 9.611887e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708610 | MtrunA17_Chr1g0201701 | 94.565 | 184 | 10 | 0 | 1 | 184 | 1 | 184 | 2.67e-128 | 358 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708610 | AT5G09270.1 | 55.789 | 95 | 37 | 2 | 90 | 184 | 19 | 108 | 4.23e-31 | 109 |
Msa0708610 | AT5G09270.2 | 55.789 | 95 | 37 | 2 | 90 | 184 | 19 | 108 | 4.23e-31 | 109 |
Find 52 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTCTGCTAAGGGCTTTA+TGG | 0.055488 | 4_4:+82174952 | Msa0708610:CDS |
CCCTCCTGCTGCAGGCTTTA+TGG | 0.092653 | 4_4:+82175123 | Msa0708610:CDS |
TATATGGCGGCTTTGGTCTT+TGG | 0.247259 | 4_4:+82175224 | Msa0708610:CDS |
ATAGATATAGAAAGCTTCTT+AGG | 0.309898 | 4_4:+82175254 | Msa0708610:CDS |
GGTTCCTATATTCTTGTATA+TGG | 0.337081 | 4_4:+82175208 | Msa0708610:CDS |
ATTCTTGTATATGGCGGCTT+TGG | 0.347000 | 4_4:+82175217 | Msa0708610:CDS |
TTCTGCCAAAGTGGTTGAAA+AGG | 0.353945 | 4_4:+82175363 | Msa0708610:CDS |
CTTGGTCCTCACCAGTTTCC+AGG | 0.356142 | 4_4:-82175090 | None:intergenic |
TGCAGGCTTTATGGATTCAT+TGG | 0.369416 | 4_4:+82175132 | Msa0708610:CDS |
CAGAAACTTATCCTTATGTA+TGG | 0.372733 | 4_4:+82175185 | Msa0708610:CDS |
TGGATAAGTGCTTCAGAACT+TGG | 0.383586 | 4_4:-82174899 | None:intergenic |
TTATGGATTCATTGGAAAAT+CGG | 0.384322 | 4_4:+82175140 | Msa0708610:CDS |
TGATTTGCCATGTCCTTGGC+TGG | 0.408407 | 4_4:-82175022 | None:intergenic |
AAGAAGCTTTCTATATCTAT+AGG | 0.413891 | 4_4:-82175251 | None:intergenic |
GTCGGTGCCCCTCCTGCTGC+AGG | 0.419080 | 4_4:+82175115 | Msa0708610:CDS |
CAGGAGGGGCACCGACTACT+TGG | 0.421600 | 4_4:-82175108 | None:intergenic |
AAGTTCTGCAGCACCTATCC+TGG | 0.422828 | 4_4:+82175072 | Msa0708610:CDS |
AGGATAGGTGCTGCAGAACT+TGG | 0.446859 | 4_4:-82175070 | None:intergenic |
AGTCGGTGGCTCTTCTGCTA+AGG | 0.456570 | 4_4:+82174943 | Msa0708610:CDS |
GCAGCACCTATCCTGGAAAC+TGG | 0.465240 | 4_4:+82175079 | Msa0708610:CDS |
GAAGCACTTATCCAGAAAAC+TGG | 0.468163 | 4_4:+82174908 | Msa0708610:CDS |
GCCGCCATATACAAGAATAT+AGG | 0.480158 | 4_4:-82175212 | None:intergenic |
TGGTTGATTTGCCATGTCCT+TGG | 0.486730 | 4_4:-82175026 | None:intergenic |
ACTACGTGAGATGGTTGAAA+AGG | 0.493284 | 4_4:+82175309 | Msa0708610:CDS |
AGCTTCTTAGGACAGAGGAC+AGG | 0.494425 | 4_4:+82175266 | Msa0708610:CDS |
AGAAACTTATCCTTATGTAT+GGG | 0.501079 | 4_4:+82175186 | Msa0708610:CDS |
TTCTAATAATTCTGCCAAAG+TGG | 0.501415 | 4_4:+82175354 | Msa0708610:CDS |
TCTGCCAAAGTGGTTGAAAA+GGG | 0.502981 | 4_4:+82175364 | Msa0708610:CDS |
ATATAGGAACCCCATACATA+AGG | 0.508413 | 4_4:-82175196 | None:intergenic |
TCCTATATTCTTGTATATGG+CGG | 0.516713 | 4_4:+82175211 | Msa0708610:CDS |
ATGTTGCAATGTAGGCTACT+TGG | 0.523428 | 4_4:-82175410 | None:intergenic |
CATAAAGCCTGCAGCAGGAG+GGG | 0.525453 | 4_4:-82175122 | None:intergenic |
TCCTCACCAGTTTCCAGGAT+AGG | 0.526596 | 4_4:-82175085 | None:intergenic |
TCCATAAAGCCTGCAGCAGG+AGG | 0.530529 | 4_4:-82175124 | None:intergenic |
TTAGGACAGAGGACAGGGTA+CGG | 0.537011 | 4_4:+82175272 | Msa0708610:CDS |
GTCGGTGGCTCTTCTGCTAA+GGG | 0.540392 | 4_4:+82174944 | Msa0708610:CDS |
GAATCCATAAAGCCTGCAGC+AGG | 0.543830 | 4_4:-82175127 | None:intergenic |
TAGGACAGAGGACAGGGTAC+GGG | 0.558112 | 4_4:+82175273 | Msa0708610:CDS |
GGAAGGAATCTCAGAAGATG+TGG | 0.565631 | 4_4:-82175389 | None:intergenic |
GAAACTTATCCTTATGTATG+GGG | 0.570070 | 4_4:+82175187 | Msa0708610:CDS |
TCAAGCAAGACTACGTGAGA+TGG | 0.592566 | 4_4:+82175300 | Msa0708610:CDS |
CCATAAAGCCTGCAGCAGGA+GGG | 0.618716 | 4_4:-82175123 | None:intergenic |
TAGCTGGAACACTCCAGCCA+AGG | 0.621030 | 4_4:+82175009 | Msa0708610:CDS |
GAACACTCCAGCCAAGGACA+TGG | 0.636957 | 4_4:+82175015 | Msa0708610:CDS |
GCTTCTTAGGACAGAGGACA+GGG | 0.639564 | 4_4:+82175267 | Msa0708610:CDS |
ACCTATCCTGGAAACTGGTG+AGG | 0.641675 | 4_4:+82175084 | Msa0708610:CDS |
TGCAATGTAGGCTACTTGGA+AGG | 0.646398 | 4_4:-82175406 | None:intergenic |
ACTGGCGAGGATCAAGTAGT+CGG | 0.654403 | 4_4:+82174926 | Msa0708610:CDS |
TAGAAAGCTTCTTAGGACAG+AGG | 0.663471 | 4_4:+82175261 | Msa0708610:CDS |
ACTGGTGAGGACCAAGTAGT+CGG | 0.664340 | 4_4:+82175097 | Msa0708610:CDS |
GGCGAGGATCAAGTAGTCGG+TGG | 0.665719 | 4_4:+82174929 | Msa0708610:CDS |
ACTTATCCAGAAAACTGGCG+AGG | 0.696112 | 4_4:+82174913 | Msa0708610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATGGATTCATTGAAAAAT+CGG | + | chr4_4:82174969-82174988 | Msa0708610:CDS | 20.0% |
! | ATCAAAAAATCATAGATAGC+TGG | + | chr4_4:82174993-82175012 | Msa0708610:CDS | 25.0% |
! | TTATGGATTCATTGGAAAAT+CGG | + | chr4_4:82175140-82175159 | Msa0708610:CDS | 25.0% |
! | AGAAACTTATCCTTATGTAT+GGG | + | chr4_4:82175186-82175205 | Msa0708610:CDS | 25.0% |
! | AAGAAGCTTTCTATATCTAT+AGG | - | chr4_4:82175254-82175273 | None:intergenic | 25.0% |
! | ATAGATATAGAAAGCTTCTT+AGG | + | chr4_4:82175254-82175273 | Msa0708610:CDS | 25.0% |
!!! | GCTTGTTGCTTTTCATTATT+TGG | - | chr4_4:82175049-82175068 | None:intergenic | 30.0% |
CAGAAACTTATCCTTATGTA+TGG | + | chr4_4:82175185-82175204 | Msa0708610:CDS | 30.0% | |
GAAACTTATCCTTATGTATG+GGG | + | chr4_4:82175187-82175206 | Msa0708610:CDS | 30.0% | |
GGTTCCTATATTCTTGTATA+TGG | + | chr4_4:82175208-82175227 | Msa0708610:CDS | 30.0% | |
TCCTATATTCTTGTATATGG+CGG | + | chr4_4:82175211-82175230 | Msa0708610:CDS | 30.0% | |
TTCTAATAATTCTGCCAAAG+TGG | + | chr4_4:82175354-82175373 | Msa0708610:CDS | 30.0% | |
!!! | GCTTGCTGCTTTTCATTATT+TGG | - | chr4_4:82174878-82174897 | None:intergenic | 35.0% |
ATATAGGAACCCCATACATA+AGG | - | chr4_4:82175199-82175218 | None:intergenic | 35.0% | |
TGGATAAGTGCTTCAGAACT+TGG | - | chr4_4:82174902-82174921 | None:intergenic | 40.0% | |
! | GAAGCACTTATCCAGAAAAC+TGG | + | chr4_4:82174908-82174927 | Msa0708610:CDS | 40.0% |
! | TGCAGGCTTTATGGATTCAT+TGG | + | chr4_4:82175132-82175151 | Msa0708610:CDS | 40.0% |
GCCGCCATATACAAGAATAT+AGG | - | chr4_4:82175215-82175234 | None:intergenic | 40.0% | |
ATTCTTGTATATGGCGGCTT+TGG | + | chr4_4:82175217-82175236 | Msa0708610:CDS | 40.0% | |
TAGAAAGCTTCTTAGGACAG+AGG | + | chr4_4:82175261-82175280 | Msa0708610:CDS | 40.0% | |
ACTACGTGAGATGGTTGAAA+AGG | + | chr4_4:82175309-82175328 | Msa0708610:CDS | 40.0% | |
TTCTGCCAAAGTGGTTGAAA+AGG | + | chr4_4:82175363-82175382 | Msa0708610:CDS | 40.0% | |
TCTGCCAAAGTGGTTGAAAA+GGG | + | chr4_4:82175364-82175383 | Msa0708610:CDS | 40.0% | |
ACTTATCCAGAAAACTGGCG+AGG | + | chr4_4:82174913-82174932 | Msa0708610:CDS | 45.0% | |
CTCTTCTGCTAAGGGCTTTA+TGG | + | chr4_4:82174952-82174971 | Msa0708610:CDS | 45.0% | |
!! | TGGTTGATTTGCCATGTCCT+TGG | - | chr4_4:82175029-82175048 | None:intergenic | 45.0% |
! | TATATGGCGGCTTTGGTCTT+TGG | + | chr4_4:82175224-82175243 | Msa0708610:CDS | 45.0% |
TCAAGCAAGACTACGTGAGA+TGG | + | chr4_4:82175300-82175319 | Msa0708610:CDS | 45.0% | |
! | GGAACCCTTTTCAACCACTT+TGG | - | chr4_4:82175371-82175390 | None:intergenic | 45.0% |
GGAAGGAATCTCAGAAGATG+TGG | - | chr4_4:82175392-82175411 | None:intergenic | 45.0% | |
! | CTTGATCCTCGCCAGTTTTC+TGG | - | chr4_4:82174922-82174941 | None:intergenic | 50.0% |
ACTGGCGAGGATCAAGTAGT+CGG | + | chr4_4:82174926-82174945 | Msa0708610:CDS | 50.0% | |
! | TGATTTGCCATGTCCTTGGC+TGG | - | chr4_4:82175025-82175044 | None:intergenic | 50.0% |
! | AGGATAGGTGCTGCAGAACT+TGG | - | chr4_4:82175073-82175092 | None:intergenic | 50.0% |
AAGTTCTGCAGCACCTATCC+TGG | + | chr4_4:82175072-82175091 | Msa0708610:CDS | 50.0% | |
ACCTATCCTGGAAACTGGTG+AGG | + | chr4_4:82175084-82175103 | Msa0708610:CDS | 50.0% | |
TCCTCACCAGTTTCCAGGAT+AGG | - | chr4_4:82175088-82175107 | None:intergenic | 50.0% | |
ACTGGTGAGGACCAAGTAGT+CGG | + | chr4_4:82175097-82175116 | Msa0708610:CDS | 50.0% | |
GAATCCATAAAGCCTGCAGC+AGG | - | chr4_4:82175130-82175149 | None:intergenic | 50.0% | |
AGCTTCTTAGGACAGAGGAC+AGG | + | chr4_4:82175266-82175285 | Msa0708610:CDS | 50.0% | |
GCTTCTTAGGACAGAGGACA+GGG | + | chr4_4:82175267-82175286 | Msa0708610:CDS | 50.0% | |
TTAGGACAGAGGACAGGGTA+CGG | + | chr4_4:82175272-82175291 | Msa0708610:CDS | 50.0% | |
AGTCGGTGGCTCTTCTGCTA+AGG | + | chr4_4:82174943-82174962 | Msa0708610:CDS | 55.0% | |
GTCGGTGGCTCTTCTGCTAA+GGG | + | chr4_4:82174944-82174963 | Msa0708610:CDS | 55.0% | |
TAGCTGGAACACTCCAGCCA+AGG | + | chr4_4:82175009-82175028 | Msa0708610:CDS | 55.0% | |
GAACACTCCAGCCAAGGACA+TGG | + | chr4_4:82175015-82175034 | Msa0708610:CDS | 55.0% | |
GCAGCACCTATCCTGGAAAC+TGG | + | chr4_4:82175079-82175098 | Msa0708610:CDS | 55.0% | |
CTTGGTCCTCACCAGTTTCC+AGG | - | chr4_4:82175093-82175112 | None:intergenic | 55.0% | |
CATAAAGCCTGCAGCAGGAG+GGG | - | chr4_4:82175125-82175144 | None:intergenic | 55.0% | |
CCATAAAGCCTGCAGCAGGA+GGG | - | chr4_4:82175126-82175145 | None:intergenic | 55.0% | |
TCCATAAAGCCTGCAGCAGG+AGG | - | chr4_4:82175127-82175146 | None:intergenic | 55.0% | |
TAGGACAGAGGACAGGGTAC+GGG | + | chr4_4:82175273-82175292 | Msa0708610:CDS | 55.0% | |
GGCGAGGATCAAGTAGTCGG+TGG | + | chr4_4:82174929-82174948 | Msa0708610:CDS | 60.0% | |
CCCTCCTGCTGCAGGCTTTA+TGG | + | chr4_4:82175123-82175142 | Msa0708610:CDS | 60.0% | |
!! | CAGGAGGGGCACCGACTACT+TGG | - | chr4_4:82175111-82175130 | None:intergenic | 65.0% |
! | GTCGGTGCCCCTCCTGCTGC+AGG | + | chr4_4:82175115-82175134 | Msa0708610:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 82174863 | 82175417 | 82174863 | ID=Msa0708610;Name=Msa0708610 |
chr4_4 | mRNA | 82174863 | 82175417 | 82174863 | ID=Msa0708610-mRNA-1;Parent=Msa0708610;Name=Msa0708610-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|184 |
chr4_4 | exon | 82174863 | 82175417 | 82174863 | ID=Msa0708610-mRNA-1:exon:27032;Parent=Msa0708610-mRNA-1 |
chr4_4 | CDS | 82174863 | 82175417 | 82174863 | ID=Msa0708610-mRNA-1:cds;Parent=Msa0708610-mRNA-1 |
Gene Sequence |
Protein sequence |