Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054930 | XP_013465830.1 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.48e-166 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054930 | sp|Q8W487|YB95_ARATH | 27.315 | 216 | 132 | 9 | 33 | 233 | 45 | 250 | 1.33e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054930 | A0A072VE84 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 1.18e-166 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0054930 | -0.818098 | 2.340185e-52 | -8.615850e-47 |
| Msa0004860 | Msa0054930 | 0.808669 | 2.764867e-50 | -8.615850e-47 |
| Msa0006290 | Msa0054930 | 0.980460 | 2.864081e-150 | -8.615850e-47 |
| Msa0027580 | Msa0054930 | 0.819365 | 1.206744e-52 | -8.615850e-47 |
| Msa0030380 | Msa0054930 | 0.808595 | 2.866939e-50 | -8.615850e-47 |
| Msa0032260 | Msa0054930 | 0.813103 | 3.031305e-51 | -8.615850e-47 |
| Msa0043170 | Msa0054930 | 0.814566 | 1.443201e-51 | -8.615850e-47 |
| Msa0047160 | Msa0054930 | 0.820013 | 8.582365e-53 | -8.615850e-47 |
| Msa0054440 | Msa0054930 | 0.801095 | 1.058253e-48 | -8.615850e-47 |
| Msa0054930 | Msa0057140 | 0.806065 | 9.856760e-50 | -8.615850e-47 |
| Msa0054930 | Msa0057710 | 0.815911 | 7.251419e-52 | -8.615850e-47 |
| Msa0054930 | Msa0075340 | 0.818252 | 2.160169e-52 | -8.615850e-47 |
| Msa0054930 | Msa0076000 | 0.803577 | 3.261770e-49 | -8.615850e-47 |
| Msa0054930 | Msa0087290 | 0.803095 | 4.105974e-49 | -8.615850e-47 |
| Msa0054930 | Msa0094470 | 0.824392 | 8.277046e-54 | -8.615850e-47 |
| Msa0054930 | Msa0094920 | 0.816522 | 5.294481e-52 | -8.615850e-47 |
| Msa0054930 | Msa0100300 | 0.981987 | 6.025229e-154 | -8.615850e-47 |
| Msa0054930 | Msa0124340 | 0.809115 | 2.219012e-50 | -8.615850e-47 |
| Msa0054930 | Msa0127040 | 0.806745 | 7.085048e-50 | -8.615850e-47 |
| Msa0054930 | Msa0127310 | 0.808860 | 2.516608e-50 | -8.615850e-47 |
| Msa0054930 | Msa0144540 | 0.890048 | 1.400345e-73 | -8.615850e-47 |
| Msa0054930 | Msa0146770 | 0.821506 | 3.893927e-53 | -8.615850e-47 |
| Msa0054930 | Msa0154770 | 0.811736 | 6.030956e-51 | -8.615850e-47 |
| Msa0054930 | Msa0165950 | 0.811290 | 7.540022e-51 | -8.615850e-47 |
| Msa0054930 | Msa0167480 | 0.808181 | 3.513564e-50 | -8.615850e-47 |
| Msa0054930 | Msa0173740 | 0.809378 | 1.948849e-50 | -8.615850e-47 |
| Msa0054930 | Msa0173820 | 0.807105 | 5.944976e-50 | -8.615850e-47 |
| Msa0054930 | Msa0182030 | 0.806079 | 9.790664e-50 | -8.615850e-47 |
| Msa0054930 | Msa0182280 | 0.816037 | 6.799587e-52 | -8.615850e-47 |
| Msa0054930 | Msa0199690 | 0.822520 | 2.267581e-53 | -8.615850e-47 |
| Msa0054930 | Msa0226470 | 0.828340 | 9.492332e-55 | -8.615850e-47 |
| Msa0054930 | Msa0227400 | 0.845020 | 5.267442e-59 | -8.615850e-47 |
| Msa0054930 | Msa0231660 | 0.802655 | 5.060915e-49 | -8.615850e-47 |
| Msa0054930 | Msa0236270 | 0.807866 | 4.099819e-50 | -8.615850e-47 |
| Msa0054930 | Msa0239450 | 0.803992 | 2.674453e-49 | -8.615850e-47 |
| Msa0054930 | Msa0242230 | 0.809720 | 1.645704e-50 | -8.615850e-47 |
| Msa0054930 | Msa0242680 | 0.802687 | 4.984093e-49 | -8.615850e-47 |
| Msa0054930 | Msa0260210 | 0.813488 | 2.495140e-51 | -8.615850e-47 |
| Msa0054930 | Msa0264930 | 0.802705 | 4.942510e-49 | -8.615850e-47 |
| Msa0054930 | Msa0280430 | 0.829747 | 4.330178e-55 | -8.615850e-47 |
| Msa0054930 | Msa0291520 | 0.826710 | 2.336084e-54 | -8.615850e-47 |
| Msa0054930 | Msa0304290 | 0.814414 | 1.559503e-51 | -8.615850e-47 |
| Msa0054930 | Msa0304330 | 0.817072 | 3.986902e-52 | -8.615850e-47 |
| Msa0054930 | Msa0305890 | 0.815549 | 8.734040e-52 | -8.615850e-47 |
| Msa0054930 | Msa0337650 | 0.818806 | 1.617449e-52 | -8.615850e-47 |
| Msa0054930 | Msa0340810 | 0.817478 | 3.229293e-52 | -8.615850e-47 |
| Msa0054930 | Msa0372660 | 0.816459 | 5.471000e-52 | -8.615850e-47 |
| Msa0054930 | Msa0372670 | 0.813562 | 2.403903e-51 | -8.615850e-47 |
| Msa0054930 | Msa0376690 | 0.802453 | 5.570480e-49 | -8.615850e-47 |
| Msa0054930 | Msa0385580 | 0.818358 | 2.043515e-52 | -8.615850e-47 |
| Msa0054930 | Msa0398950 | 0.806444 | 8.202224e-50 | -8.615850e-47 |
| Msa0054930 | Msa0413730 | 0.805302 | 1.425255e-49 | -8.615850e-47 |
| Msa0054930 | Msa0419520 | 0.811204 | 7.870597e-51 | -8.615850e-47 |
| Msa0054930 | Msa0446580 | 0.800715 | 1.265534e-48 | -8.615850e-47 |
| Msa0054930 | Msa0458060 | 0.808699 | 2.724595e-50 | -8.615850e-47 |
| Msa0054930 | Msa0465550 | 0.821968 | 3.044226e-53 | -8.615850e-47 |
| Msa0054930 | Msa0471590 | 0.810876 | 9.267445e-51 | -8.615850e-47 |
| Msa0054930 | Msa0493920 | 0.802736 | 4.869680e-49 | -8.615850e-47 |
| Msa0054930 | Msa0511490 | 0.836374 | 9.713268e-57 | -8.615850e-47 |
| Msa0054930 | Msa0514180 | 0.803812 | 2.915783e-49 | -8.615850e-47 |
| Msa0054930 | Msa0542160 | 0.821295 | 4.357065e-53 | -8.615850e-47 |
| Msa0054930 | Msa0545060 | 0.801217 | 9.993586e-49 | -8.615850e-47 |
| Msa0054930 | Msa0546360 | 0.805302 | 1.425227e-49 | -8.615850e-47 |
| Msa0054930 | Msa0547360 | 0.809450 | 1.881311e-50 | -8.615850e-47 |
| Msa0054930 | Msa0568820 | 0.804077 | 2.568711e-49 | -8.615850e-47 |
| Msa0054930 | Msa0571920 | 0.800103 | 1.686363e-48 | -8.615850e-47 |
| Msa0054930 | Msa0581130 | 0.807623 | 4.617390e-50 | -8.615850e-47 |
| Msa0054930 | Msa0590680 | 0.802482 | 5.495127e-49 | -8.615850e-47 |
| Msa0054930 | Msa0605000 | 0.802554 | 5.310355e-49 | -8.615850e-47 |
| Msa0054930 | Msa0619070 | 0.818970 | 1.484233e-52 | -8.615850e-47 |
| Msa0054930 | Msa0641140 | 0.807461 | 4.998684e-50 | -8.615850e-47 |
| Msa0054930 | Msa0669850 | 0.801486 | 8.803288e-49 | -8.615850e-47 |
| Msa0054930 | Msa0677290 | 0.810369 | 1.193063e-50 | -8.615850e-47 |
| Msa0054930 | Msa0682900 | 0.813077 | 3.071997e-51 | -8.615850e-47 |
| Msa0054930 | Msa0685140 | 0.807312 | 5.374773e-50 | -8.615850e-47 |
| Msa0054930 | Msa0691900 | 0.814627 | 1.399245e-51 | -8.615850e-47 |
| Msa0054930 | Msa0692940 | 0.806963 | 6.372119e-50 | -8.615850e-47 |
| Msa0054930 | Msa0694840 | 0.804265 | 2.346741e-49 | -8.615850e-47 |
| Msa0054930 | Msa0698060 | 0.822526 | 2.259417e-53 | -8.615850e-47 |
| Msa0054930 | Msa0708610 | 0.803017 | 4.260017e-49 | -8.615850e-47 |
| Msa0054930 | Msa0709500 | 0.830273 | 3.221839e-55 | -8.615850e-47 |
| Msa0054930 | Msa0715650 | 0.815735 | 7.940371e-52 | -8.615850e-47 |
| Msa0054930 | Msa0724830 | 0.804414 | 2.185029e-49 | -8.615850e-47 |
| Msa0054930 | Msa0726830 | 0.808060 | 3.727716e-50 | -8.615850e-47 |
| Msa0054930 | Msa0726860 | 0.809790 | 1.589499e-50 | -8.615850e-47 |
| Msa0054930 | Msa0735310 | 0.805182 | 1.510457e-49 | -8.615850e-47 |
| Msa0054930 | Msa0743800 | 0.804083 | 2.560541e-49 | -8.615850e-47 |
| Msa0054930 | Msa0772480 | 0.812266 | 4.623606e-51 | -8.615850e-47 |
| Msa0054930 | Msa0786270 | 0.810884 | 9.232604e-51 | -8.615850e-47 |
| Msa0054930 | Msa0790850 | 0.836789 | 7.618064e-57 | -8.615850e-47 |
| Msa0054930 | Msa0793390 | 0.809902 | 1.503851e-50 | -8.615850e-47 |
| Msa0054930 | Msa0794670 | 0.805077 | 1.588984e-49 | -8.615850e-47 |
| Msa0054930 | Msa0796530 | 0.801628 | 8.231635e-49 | -8.615850e-47 |
| Msa0054930 | Msa0798440 | 0.821872 | 3.204365e-53 | -8.615850e-47 |
| Msa0054930 | Msa0802410 | 0.807920 | 3.992989e-50 | -8.615850e-47 |
| Msa0054930 | Msa0805500 | 0.814334 | 1.624084e-51 | -8.615850e-47 |
| Msa0054930 | Msa0814250 | 0.811486 | 6.834550e-51 | -8.615850e-47 |
| Msa0054930 | Msa0814320 | 0.826301 | 2.925212e-54 | -8.615850e-47 |
| Msa0054930 | Msa0823090 | 0.818782 | 1.637854e-52 | -8.615850e-47 |
| Msa0054930 | Msa0824640 | 0.809431 | 1.898901e-50 | -8.615850e-47 |
| Msa0054930 | Msa0830540 | 0.810097 | 1.365608e-50 | -8.615850e-47 |
| Msa0054930 | Msa0864010 | 0.804578 | 2.019682e-49 | -8.615850e-47 |
| Msa0054930 | Msa0902760 | 0.804855 | 1.768132e-49 | -8.615850e-47 |
| Msa0054930 | Msa0945440 | 0.801539 | 8.586661e-49 | -8.615850e-47 |
| Msa0054930 | Msa0970030 | 0.831241 | 1.866421e-55 | -8.615850e-47 |
| Msa0054930 | Msa0976330 | 0.817866 | 2.641065e-52 | -8.615850e-47 |
| Msa0054930 | Msa0990590 | 0.801350 | 9.386582e-49 | -8.615850e-47 |
| Msa0054930 | Msa1006840 | 0.808047 | 3.751268e-50 | -8.615850e-47 |
| Msa0054930 | Msa1013400 | 0.800463 | 1.424416e-48 | -8.615850e-47 |
| Msa0054930 | Msa1014420 | 0.815364 | 9.603148e-52 | -8.615850e-47 |
| Msa0054930 | Msa1019240 | 0.813126 | 2.997521e-51 | -8.615850e-47 |
| Msa0054930 | Msa1019260 | 0.816849 | 4.473992e-52 | -8.615850e-47 |
| Msa0054930 | Msa1055410 | 0.837598 | 4.730056e-57 | -8.615850e-47 |
| Msa0054930 | Msa1084470 | 0.851295 | 9.742980e-61 | -8.615850e-47 |
| Msa0054930 | Msa1091530 | 0.817912 | 2.578408e-52 | -8.615850e-47 |
| Msa0054930 | Msa1093330 | 0.810651 | 1.036765e-50 | -8.615850e-47 |
| Msa0054930 | Msa1093530 | 0.803455 | 3.457025e-49 | -8.615850e-47 |
| Msa0054930 | Msa1104140 | 0.824528 | 7.689114e-54 | -8.615850e-47 |
| Msa0054930 | Msa1104210 | 0.807551 | 4.782531e-50 | -8.615850e-47 |
| Msa0054930 | Msa1119200 | 0.809491 | 1.843403e-50 | -8.615850e-47 |
| Msa0054930 | Msa1125760 | 0.802511 | 5.420048e-49 | -8.615850e-47 |
| Msa0054930 | Msa1127830 | 0.803702 | 3.072593e-49 | -8.615850e-47 |
| Msa0054930 | Msa1130210 | -0.818912 | 1.530399e-52 | -8.615850e-47 |
| Msa0054930 | Msa1133400 | 0.817386 | 3.386986e-52 | -8.615850e-47 |
| Msa0054930 | Msa1165960 | 0.807841 | 4.150420e-50 | -8.615850e-47 |
| Msa0054930 | Msa1166410 | 0.803066 | 4.162232e-49 | -8.615850e-47 |
| Msa0054930 | Msa1166870 | 0.801979 | 6.972647e-49 | -8.615850e-47 |
| Msa0054930 | Msa1171360 | 0.830602 | 2.677438e-55 | -8.615850e-47 |
| Msa0054930 | Msa1174100 | 0.801018 | 1.097661e-48 | -8.615850e-47 |
| Msa0054930 | Msa1179950 | 0.836486 | 9.095631e-57 | -8.615850e-47 |
| Msa0054930 | Msa1179980 | 0.831674 | 1.460082e-55 | -8.615850e-47 |
| Msa0054930 | Msa1183660 | 0.809385 | 1.942345e-50 | -8.615850e-47 |
| Msa0054930 | Msa1187840 | 0.803211 | 3.884579e-49 | -8.615850e-47 |
| Msa0054930 | Msa1207270 | 0.806810 | 6.864884e-50 | -8.615850e-47 |
| Msa0054930 | Msa1209760 | 0.804134 | 2.499715e-49 | -8.615850e-47 |
| Msa0054930 | Msa1217660 | 0.813274 | 2.780786e-51 | -8.615850e-47 |
| Msa0054930 | Msa1218600 | 0.804308 | 2.299043e-49 | -8.615850e-47 |
| Msa0054930 | Msa1226610 | 0.807758 | 4.322792e-50 | -8.615850e-47 |
| Msa0054930 | Msa1237940 | 0.804541 | 2.056192e-49 | -8.615850e-47 |
| Msa0054930 | Msa1252740 | 0.801403 | 9.153034e-49 | -8.615850e-47 |
| Msa0054930 | Msa1254710 | 0.808042 | 3.762094e-50 | -8.615850e-47 |
| Msa0054930 | Msa1255040 | -0.805491 | 1.301303e-49 | -8.615850e-47 |
| Msa0054930 | Msa1265630 | 0.817899 | 2.595205e-52 | -8.615850e-47 |
| Msa0054930 | Msa1270620 | 0.833773 | 4.397897e-56 | -8.615850e-47 |
| Msa0054930 | Msa1270690 | 0.832321 | 1.010434e-55 | -8.615850e-47 |
| Msa0054930 | Msa1280620 | 0.800279 | 1.552863e-48 | -8.615850e-47 |
| Msa0054930 | Msa1295110 | 0.800332 | 1.514650e-48 | -8.615850e-47 |
| Msa0054930 | Msa1295490 | -0.807870 | 4.092241e-50 | -8.615850e-47 |
| Msa0054930 | Msa1306990 | 0.831665 | 1.467625e-55 | -8.615850e-47 |
| Msa0054930 | Msa1316830 | 0.808260 | 3.379804e-50 | -8.615850e-47 |
| Msa0054930 | Msa1341070 | 0.823310 | 1.484121e-53 | -8.615850e-47 |
| Msa0054930 | Msa1355700 | 0.819780 | 9.705750e-53 | -8.615850e-47 |
| Msa0054930 | Msa1356440 | 0.829372 | 5.341562e-55 | -8.615850e-47 |
| Msa0054930 | Msa1359390 | 0.947370 | 7.677145e-106 | -8.615850e-47 |
| Msa0054930 | Msa1362510 | 0.806004 | 1.015463e-49 | -8.615850e-47 |
| Msa0054930 | Msa1385670 | 0.806490 | 8.022501e-50 | -8.615850e-47 |
| Msa0054930 | Msa1386230 | 0.803171 | 3.959366e-49 | -8.615850e-47 |
| Msa0054930 | Msa1394290 | 0.818491 | 1.906675e-52 | -8.615850e-47 |
| Msa0054930 | Msa1423350 | 0.817577 | 3.067946e-52 | -8.615850e-47 |
| Msa0054930 | Msa1432700 | 0.808052 | 3.743243e-50 | -8.615850e-47 |
| Msa0054930 | Msa1444310 | 0.826478 | 2.653770e-54 | -8.615850e-47 |
| Msa0054930 | Msa1457920 | 0.807212 | 5.642994e-50 | -8.615850e-47 |
| Msa0054930 | Msa1465960 | 0.803419 | 3.516907e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054930 | MtrunA17_Chr1g0149801 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.28e-170 | 468 |
| Msa0054930 | MtrunA17_Chr4g0001071 | 43.069 | 202 | 106 | 6 | 36 | 233 | 40 | 236 | 1.69e-54 | 174 |
| Msa0054930 | MtrunA17_Chr7g0239661 | 30.380 | 237 | 146 | 8 | 11 | 233 | 23 | 254 | 1.11e-21 | 90.1 |
| Msa0054930 | MtrunA17_Chr5g0435861 | 31.381 | 239 | 146 | 9 | 4 | 232 | 24 | 254 | 2.19e-21 | 89.4 |
| Msa0054930 | MtrunA17_Chr5g0444341 | 32.110 | 109 | 68 | 2 | 130 | 232 | 105 | 213 | 1.73e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054930 | AT4G31930.1 | 54.468 | 235 | 104 | 2 | 1 | 233 | 1 | 234 | 1.41e-90 | 266 |
| Msa0054930 | AT1G80720.2 | 42.857 | 231 | 116 | 4 | 10 | 233 | 20 | 241 | 6.56e-61 | 191 |
| Msa0054930 | AT1G15870.1 | 42.667 | 225 | 117 | 6 | 17 | 233 | 21 | 241 | 1.92e-59 | 187 |
| Msa0054930 | AT1G80720.1 | 45.550 | 191 | 102 | 1 | 43 | 233 | 1 | 189 | 1.99e-59 | 186 |
| Msa0054930 | AT5G05990.1 | 29.924 | 264 | 147 | 11 | 1 | 232 | 1 | 258 | 2.53e-21 | 89.7 |
| Msa0054930 | AT5G02050.1 | 28.708 | 209 | 128 | 6 | 42 | 233 | 63 | 267 | 3.41e-21 | 89.4 |
| Msa0054930 | AT3G55605.1 | 30.488 | 164 | 103 | 4 | 79 | 233 | 97 | 258 | 1.20e-16 | 77.0 |
| Msa0054930 | AT4G32605.1 | 36.975 | 119 | 67 | 3 | 120 | 233 | 104 | 219 | 2.36e-15 | 72.8 |
| Msa0054930 | AT2G39795.1 | 27.315 | 216 | 132 | 9 | 33 | 233 | 45 | 250 | 1.36e-14 | 71.2 |
| Msa0054930 | AT2G39790.1 | 28.125 | 160 | 92 | 7 | 81 | 232 | 95 | 239 | 1.57e-12 | 65.5 |
Find 67 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACCTTGGACCTGATTTC+AGG | 0.173345 | 1_2:-9701514 | Msa0054930:intron |
| GTTACGATGAAGGGGAAATT+TGG | 0.184899 | 1_2:-9701767 | Msa0054930:CDS |
| CAAAACTTCTCCTGAATCTT+AGG | 0.262004 | 1_2:+9700820 | None:intergenic |
| GTTGGATTCAAATGGAGATT+TGG | 0.300681 | 1_2:+9702139 | None:intergenic |
| GAGAGAACATTACTGATTCT+AGG | 0.315397 | 1_2:+9702209 | None:intergenic |
| TTACGATGAAGGGGAAATTT+GGG | 0.341454 | 1_2:-9701766 | Msa0054930:CDS |
| AGGATAGAATTGAACTTCTA+AGG | 0.343544 | 1_2:-9700729 | Msa0054930:CDS |
| CTCAGCGTGGCCTGATAGTT+TGG | 0.345831 | 1_2:-9701585 | Msa0054930:CDS |
| ATTGAAGCTACAATGTTTGA+TGG | 0.356300 | 1_2:-9701725 | Msa0054930:CDS |
| TGCTAACACTACAAATCAAA+TGG | 0.360055 | 1_2:+9700592 | None:intergenic |
| GAATCTGAAGCCTAAGATTC+AGG | 0.365605 | 1_2:-9700830 | Msa0054930:CDS |
| TTTGAACATGTTCCTGCATA+TGG | 0.377388 | 1_2:-9701701 | Msa0054930:CDS |
| CGCAAAATGTTGGATTCAAA+TGG | 0.377903 | 1_2:+9702131 | None:intergenic |
| CAAGACTTTGATAATTAGTC+AGG | 0.387743 | 1_2:-9700413 | Msa0054930:three_prime_UTR |
| TTAAACGACATCATATGAAT+TGG | 0.389774 | 1_2:+9702383 | None:intergenic |
| GCATATGGAGATGATAGTTC+AGG | 0.394315 | 1_2:-9701686 | Msa0054930:CDS |
| CCGTAAGAATGTTAAGCATT+AGG | 0.404340 | 1_2:-9700541 | Msa0054930:three_prime_UTR |
| TTCTGAACATCCAAACTATC+AGG | 0.406918 | 1_2:+9701575 | None:intergenic |
| ACATCACATAACTACTATGT+AGG | 0.445412 | 1_2:+9702358 | None:intergenic |
| CATAATTCAAACCTGAAATC+AGG | 0.448439 | 1_2:+9701503 | None:intergenic |
| ATTTCTACAGCAGCAAAACT+TGG | 0.449934 | 1_2:+9700356 | None:intergenic |
| TGAATACGCTCCTCCTCATC+AGG | 0.457720 | 1_2:-9702078 | Msa0054930:intron |
| CCTAATGCTTAACATTCTTA+CGG | 0.462342 | 1_2:+9700541 | None:intergenic |
| AATGTTCTCTCTCAAACCTC+AGG | 0.465355 | 1_2:-9702197 | Msa0054930:CDS |
| ACGGAGAATTCGCAAAATGT+TGG | 0.477227 | 1_2:+9702121 | None:intergenic |
| TCTTCATCTCAGTTTGATTG+TGG | 0.483776 | 1_2:-9701651 | Msa0054930:CDS |
| CGAATAAGAACAGACATGTC+TGG | 0.489331 | 1_2:+9702275 | None:intergenic |
| ATCGTAACCACTTGCTCACC+AGG | 0.494801 | 1_2:+9701782 | None:intergenic |
| TTGAAGCTACAATGTTTGAT+GGG | 0.509177 | 1_2:-9701724 | Msa0054930:CDS |
| TGAGCAAGTGGTTACGATGA+AGG | 0.510024 | 1_2:-9701777 | Msa0054930:CDS |
| CATCACATAACTACTATGTA+GGG | 0.514059 | 1_2:+9702359 | None:intergenic |
| GCTAACACTACAAATCAAAT+GGG | 0.514085 | 1_2:+9700593 | None:intergenic |
| CTTGATACTCGATTTCGTTA+CGG | 0.514717 | 1_2:+9702102 | None:intergenic |
| CTGAAATCAGGTCCAAGGTA+AGG | 0.518651 | 1_2:+9701515 | None:intergenic |
| GAGCAAGTGGTTACGATGAA+GGG | 0.521381 | 1_2:-9701776 | Msa0054930:CDS |
| TGTTAAGCATTAGGAGGCAA+GGG | 0.528526 | 1_2:-9700532 | Msa0054930:three_prime_UTR |
| TGATTGTGGATATATCGAAA+GGG | 0.531126 | 1_2:-9701637 | Msa0054930:CDS |
| ATTCCTACAATGGTAAAACT+TGG | 0.542661 | 1_2:+9700634 | None:intergenic |
| GAACTATCATCTCCATATGC+AGG | 0.542924 | 1_2:+9701689 | None:intergenic |
| CATATGGAGATGATAGTTCA+GGG | 0.543217 | 1_2:-9701685 | Msa0054930:CDS |
| AACGATTTGAATTCTGTCAC+AGG | 0.543255 | 1_2:+9701821 | None:intergenic |
| TTGATTGTGGATATATCGAA+AGG | 0.546720 | 1_2:-9701638 | Msa0054930:CDS |
| ATGTTAAGCATTAGGAGGCA+AGG | 0.560179 | 1_2:-9700533 | Msa0054930:three_prime_UTR |
| AATTGAACTTCTAAGGTGGA+TGG | 0.561187 | 1_2:-9700722 | Msa0054930:CDS |
| TTGCGAGTACTTGGACGCAA+GGG | 0.561929 | 1_2:-9700800 | Msa0054930:CDS |
| GATTGTGGATATATCGAAAG+GGG | 0.572237 | 1_2:-9701636 | Msa0054930:CDS |
| GAAGAAACTAATTCCTACAA+TGG | 0.594842 | 1_2:+9700624 | None:intergenic |
| GATATATCGAAAGGGGAAGG+TGG | 0.596404 | 1_2:-9701629 | Msa0054930:CDS |
| AGAATAGTGGGAACCTGATG+AGG | 0.597183 | 1_2:+9702065 | None:intergenic |
| CAAACCTGAAATCAGGTCCA+AGG | 0.599008 | 1_2:+9701510 | None:intergenic |
| TTTGCGAGTACTTGGACGCA+AGG | 0.601738 | 1_2:-9700801 | Msa0054930:CDS |
| ATAGAATTGAACTTCTAAGG+TGG | 0.601785 | 1_2:-9700726 | Msa0054930:CDS |
| TGCGAGTACTTGGACGCAAG+GGG | 0.604395 | 1_2:-9700799 | Msa0054930:CDS |
| TAAGAATGTTAAGCATTAGG+AGG | 0.614195 | 1_2:-9700538 | Msa0054930:three_prime_UTR |
| AGCAAGTGGTTACGATGAAG+GGG | 0.615389 | 1_2:-9701775 | Msa0054930:CDS |
| TTTATTGTTGAAGAGAGACC+TGG | 0.619462 | 1_2:-9701800 | Msa0054930:CDS |
| AGAGAGACCTGGTGAGCAAG+TGG | 0.623326 | 1_2:-9701789 | Msa0054930:CDS |
| TACGATGAAGGGGAAATTTG+GGG | 0.627192 | 1_2:-9701765 | Msa0054930:CDS |
| ATGTCGACTAGGCCTTACCT+TGG | 0.627849 | 1_2:-9701527 | Msa0054930:CDS |
| GTGGATATATCGAAAGGGGA+AGG | 0.628718 | 1_2:-9701632 | Msa0054930:CDS |
| ATAGTGGGAACCTGATGAGG+AGG | 0.642607 | 1_2:+9702068 | None:intergenic |
| AGCGAGGGAAGATGTCGACT+AGG | 0.671718 | 1_2:-9701538 | Msa0054930:CDS |
| AGCTCTGTTACTGAAACCTG+AGG | 0.676912 | 1_2:+9702181 | None:intergenic |
| ATCACATAACTACTATGTAG+GGG | 0.682694 | 1_2:+9702360 | None:intergenic |
| ACACGAGTATATGATGAACA+AGG | 0.706429 | 1_2:-9700749 | Msa0054930:CDS |
| TAGAATTCGTCTGCTCAGCG+TGG | 0.712888 | 1_2:-9701598 | Msa0054930:CDS |
| ATATGGAGATGATAGTTCAG+GGG | 0.730665 | 1_2:-9701684 | Msa0054930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATCAATTTTGTTATT+AGG | - | chr1_2:9700730-9700749 | Msa0054930:CDS | 15.0% |
| !!! | TTTGATCAATTTTGTTATTA+GGG | - | chr1_2:9700731-9700750 | Msa0054930:CDS | 15.0% |
| !!! | AAAAATAATTTTTTTCGAAG+TGG | - | chr1_2:9700847-9700866 | Msa0054930:intron | 15.0% |
| !!! | AAAATAATTTTTTTCGAAGT+GGG | - | chr1_2:9700848-9700867 | Msa0054930:intron | 15.0% |
| !! | AAATCTAAATCAAAAAAGTT+TGG | + | chr1_2:9701781-9701800 | None:intergenic | 15.0% |
| !!! | TTTTGATCAATTTTGTTATT+AGG | - | chr1_2:9700730-9700749 | Msa0054930:CDS | 15.0% |
| !!! | TTTGATCAATTTTGTTATTA+GGG | - | chr1_2:9700731-9700750 | Msa0054930:CDS | 15.0% |
| !!! | AAAAATAATTTTTTTCGAAG+TGG | - | chr1_2:9700847-9700866 | Msa0054930:intron | 15.0% |
| !!! | AAAATAATTTTTTTCGAAGT+GGG | - | chr1_2:9700848-9700867 | Msa0054930:intron | 15.0% |
| !! | AAATCTAAATCAAAAAAGTT+TGG | + | chr1_2:9701781-9701800 | None:intergenic | 15.0% |
| !!! | TTTTTTTCATGTAGAATAGT+GGG | + | chr1_2:9700703-9700722 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCATGTAGAATAG+TGG | + | chr1_2:9700704-9700723 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTTGATAGCTTA+AGG | - | chr1_2:9701515-9701534 | Msa0054930:CDS | 20.0% |
| !! | TGAATAAAGTTGAAATGTTT+AGG | + | chr1_2:9701754-9701773 | None:intergenic | 20.0% |
| !! | AACATTTCAACTTTATTCAT+TGG | - | chr1_2:9701755-9701774 | Msa0054930:CDS | 20.0% |
| !!! | TTTTCATCTGTTTAAATTGT+TGG | - | chr1_2:9701894-9701913 | Msa0054930:intron | 20.0% |
| !!! | AGGAAATTGTTGAATATTTT+TGG | - | chr1_2:9702303-9702322 | Msa0054930:five_prime_UTR | 20.0% |
| !!! | AAATTGTTGAATATTTTTGG+TGG | - | chr1_2:9702306-9702325 | Msa0054930:five_prime_UTR | 20.0% |
| !!! | TTTTTTTCATGTAGAATAGT+GGG | + | chr1_2:9700703-9700722 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCATGTAGAATAG+TGG | + | chr1_2:9700704-9700723 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTTGATAGCTTA+AGG | - | chr1_2:9701515-9701534 | Msa0054930:CDS | 20.0% |
| !! | TGAATAAAGTTGAAATGTTT+AGG | + | chr1_2:9701754-9701773 | None:intergenic | 20.0% |
| !! | AACATTTCAACTTTATTCAT+TGG | - | chr1_2:9701755-9701774 | Msa0054930:CDS | 20.0% |
| !!! | TTTTCATCTGTTTAAATTGT+TGG | - | chr1_2:9701894-9701913 | Msa0054930:intron | 20.0% |
| !!! | AGGAAATTGTTGAATATTTT+TGG | - | chr1_2:9702303-9702322 | Msa0054930:five_prime_UTR | 20.0% |
| !!! | AAATTGTTGAATATTTTTGG+TGG | - | chr1_2:9702306-9702325 | Msa0054930:five_prime_UTR | 20.0% |
| ! | TTAAACGACATCATATGAAT+TGG | + | chr1_2:9700373-9700392 | None:intergenic | 25.0% |
| ! | ATATCACAATGTGATTGTTA+TGG | + | chr1_2:9701335-9701354 | None:intergenic | 25.0% |
| ! | AACAATCACATTGTGATATT+TGG | - | chr1_2:9701336-9701355 | Msa0054930:intron | 25.0% |
| !! | CAATTTTACTTACAAAAGCA+CGG | + | chr1_2:9701703-9701722 | None:intergenic | 25.0% |
| ! | CGATGAATGAATGATAAAAA+AGG | - | chr1_2:9702283-9702302 | Msa0054930:exon | 25.0% |
| ! | TTAAACGACATCATATGAAT+TGG | + | chr1_2:9700373-9700392 | None:intergenic | 25.0% |
| ! | ATATCACAATGTGATTGTTA+TGG | + | chr1_2:9701335-9701354 | None:intergenic | 25.0% |
| ! | AACAATCACATTGTGATATT+TGG | - | chr1_2:9701336-9701355 | Msa0054930:intron | 25.0% |
| !! | CAATTTTACTTACAAAAGCA+CGG | + | chr1_2:9701703-9701722 | None:intergenic | 25.0% |
| ! | CGATGAATGAATGATAAAAA+AGG | - | chr1_2:9702283-9702302 | Msa0054930:exon | 25.0% |
| ATCACATAACTACTATGTAG+GGG | + | chr1_2:9700396-9700415 | None:intergenic | 30.0% | |
| CATCACATAACTACTATGTA+GGG | + | chr1_2:9700397-9700416 | None:intergenic | 30.0% | |
| ACATCACATAACTACTATGT+AGG | + | chr1_2:9700398-9700417 | None:intergenic | 30.0% | |
| ATTGAAGCTACAATGTTTGA+TGG | - | chr1_2:9701028-9701047 | Msa0054930:intron | 30.0% | |
| TTGAAGCTACAATGTTTGAT+GGG | - | chr1_2:9701029-9701048 | Msa0054930:intron | 30.0% | |
| TTGATTGTGGATATATCGAA+AGG | - | chr1_2:9701115-9701134 | Msa0054930:intron | 30.0% | |
| TGATTGTGGATATATCGAAA+GGG | - | chr1_2:9701116-9701135 | Msa0054930:intron | 30.0% | |
| ! | AAAGTTTTCATGTTAAAGCG+AGG | - | chr1_2:9701199-9701218 | Msa0054930:intron | 30.0% |
| ! | AAGTTTTCATGTTAAAGCGA+GGG | - | chr1_2:9701200-9701219 | Msa0054930:intron | 30.0% |
| CATAATTCAAACCTGAAATC+AGG | + | chr1_2:9701253-9701272 | None:intergenic | 30.0% | |
| CCAAACAACAAATGTACAAT+AGG | + | chr1_2:9701290-9701309 | None:intergenic | 30.0% | |
| !! | CCTATTGTACATTTGTTGTT+TGG | - | chr1_2:9701287-9701306 | Msa0054930:intron | 30.0% |
| !! | ATTGTACATTTGTTGTTTGG+TGG | - | chr1_2:9701290-9701309 | Msa0054930:intron | 30.0% |
| CATTGTGATATTTGGTATAG+TGG | - | chr1_2:9701344-9701363 | Msa0054930:intron | 30.0% | |
| ! | TGAAATGTTTAGGATCTGTT+AGG | + | chr1_2:9701744-9701763 | None:intergenic | 30.0% |
| AACTACACAAAGACTGAATT+TGG | - | chr1_2:9701802-9701821 | Msa0054930:CDS | 30.0% | |
| ! | CATTGCAAAACTTTTATCGA+AGG | - | chr1_2:9701825-9701844 | Msa0054930:intron | 30.0% |
| AGGATAGAATTGAACTTCTA+AGG | - | chr1_2:9702024-9702043 | Msa0054930:intron | 30.0% | |
| ! | ATAGAATTGAACTTCTAAGG+TGG | - | chr1_2:9702027-9702046 | Msa0054930:intron | 30.0% |
| ! | CAAGTCTTTTGTGGAAAAAT+AGG | - | chr1_2:9702061-9702080 | Msa0054930:intron | 30.0% |
| ATTCCTACAATGGTAAAACT+TGG | + | chr1_2:9702122-9702141 | None:intergenic | 30.0% | |
| GAAGAAACTAATTCCTACAA+TGG | + | chr1_2:9702132-9702151 | None:intergenic | 30.0% | |
| GCTAACACTACAAATCAAAT+GGG | + | chr1_2:9702163-9702182 | None:intergenic | 30.0% | |
| TGCTAACACTACAAATCAAA+TGG | + | chr1_2:9702164-9702183 | None:intergenic | 30.0% | |
| CCTAATGCTTAACATTCTTA+CGG | + | chr1_2:9702215-9702234 | None:intergenic | 30.0% | |
| TAAGAATGTTAAGCATTAGG+AGG | - | chr1_2:9702215-9702234 | Msa0054930:CDS | 30.0% | |
| !!! | TGTTGAATATTTTTGGTGGA+TGG | - | chr1_2:9702310-9702329 | Msa0054930:five_prime_UTR | 30.0% |
| ! | CAAGACTTTGATAATTAGTC+AGG | - | chr1_2:9702340-9702359 | Msa0054930:five_prime_UTR | 30.0% |
| ATCACATAACTACTATGTAG+GGG | + | chr1_2:9700396-9700415 | None:intergenic | 30.0% | |
| CATCACATAACTACTATGTA+GGG | + | chr1_2:9700397-9700416 | None:intergenic | 30.0% | |
| ACATCACATAACTACTATGT+AGG | + | chr1_2:9700398-9700417 | None:intergenic | 30.0% | |
| ATTGAAGCTACAATGTTTGA+TGG | - | chr1_2:9701028-9701047 | Msa0054930:intron | 30.0% | |
| TTGAAGCTACAATGTTTGAT+GGG | - | chr1_2:9701029-9701048 | Msa0054930:intron | 30.0% | |
| TTGATTGTGGATATATCGAA+AGG | - | chr1_2:9701115-9701134 | Msa0054930:intron | 30.0% | |
| TGATTGTGGATATATCGAAA+GGG | - | chr1_2:9701116-9701135 | Msa0054930:intron | 30.0% | |
| ! | AAAGTTTTCATGTTAAAGCG+AGG | - | chr1_2:9701199-9701218 | Msa0054930:intron | 30.0% |
| ! | AAGTTTTCATGTTAAAGCGA+GGG | - | chr1_2:9701200-9701219 | Msa0054930:intron | 30.0% |
| CATAATTCAAACCTGAAATC+AGG | + | chr1_2:9701253-9701272 | None:intergenic | 30.0% | |
| CCAAACAACAAATGTACAAT+AGG | + | chr1_2:9701290-9701309 | None:intergenic | 30.0% | |
| !! | CCTATTGTACATTTGTTGTT+TGG | - | chr1_2:9701287-9701306 | Msa0054930:intron | 30.0% |
| !! | ATTGTACATTTGTTGTTTGG+TGG | - | chr1_2:9701290-9701309 | Msa0054930:intron | 30.0% |
| CATTGTGATATTTGGTATAG+TGG | - | chr1_2:9701344-9701363 | Msa0054930:intron | 30.0% | |
| ! | TGAAATGTTTAGGATCTGTT+AGG | + | chr1_2:9701744-9701763 | None:intergenic | 30.0% |
| AACTACACAAAGACTGAATT+TGG | - | chr1_2:9701802-9701821 | Msa0054930:CDS | 30.0% | |
| ! | CATTGCAAAACTTTTATCGA+AGG | - | chr1_2:9701825-9701844 | Msa0054930:intron | 30.0% |
| AGGATAGAATTGAACTTCTA+AGG | - | chr1_2:9702024-9702043 | Msa0054930:intron | 30.0% | |
| ! | ATAGAATTGAACTTCTAAGG+TGG | - | chr1_2:9702027-9702046 | Msa0054930:intron | 30.0% |
| ! | CAAGTCTTTTGTGGAAAAAT+AGG | - | chr1_2:9702061-9702080 | Msa0054930:intron | 30.0% |
| ATTCCTACAATGGTAAAACT+TGG | + | chr1_2:9702122-9702141 | None:intergenic | 30.0% | |
| GAAGAAACTAATTCCTACAA+TGG | + | chr1_2:9702132-9702151 | None:intergenic | 30.0% | |
| GCTAACACTACAAATCAAAT+GGG | + | chr1_2:9702163-9702182 | None:intergenic | 30.0% | |
| TGCTAACACTACAAATCAAA+TGG | + | chr1_2:9702164-9702183 | None:intergenic | 30.0% | |
| CCTAATGCTTAACATTCTTA+CGG | + | chr1_2:9702215-9702234 | None:intergenic | 30.0% | |
| TAAGAATGTTAAGCATTAGG+AGG | - | chr1_2:9702215-9702234 | Msa0054930:CDS | 30.0% | |
| !!! | TGTTGAATATTTTTGGTGGA+TGG | - | chr1_2:9702310-9702329 | Msa0054930:five_prime_UTR | 30.0% |
| ! | CAAGACTTTGATAATTAGTC+AGG | - | chr1_2:9702340-9702359 | Msa0054930:five_prime_UTR | 30.0% |
| TGCAGTTGAACGATGAAAAA+TGG | + | chr1_2:9700427-9700446 | None:intergenic | 35.0% | |
| !! | GAGAGAACATTACTGATTCT+AGG | + | chr1_2:9700547-9700566 | None:intergenic | 35.0% |
| GTTGGATTCAAATGGAGATT+TGG | + | chr1_2:9700617-9700636 | None:intergenic | 35.0% | |
| CGCAAAATGTTGGATTCAAA+TGG | + | chr1_2:9700625-9700644 | None:intergenic | 35.0% | |
| CTTGATACTCGATTTCGTTA+CGG | + | chr1_2:9700654-9700673 | None:intergenic | 35.0% | |
| !! | TTTTTCGAAGTGGGTAATTG+CGG | - | chr1_2:9700857-9700876 | Msa0054930:intron | 35.0% |
| AACGATTTGAATTCTGTCAC+AGG | + | chr1_2:9700935-9700954 | None:intergenic | 35.0% | |
| TTTATTGTTGAAGAGAGACC+TGG | - | chr1_2:9700953-9700972 | Msa0054930:intron | 35.0% | |
| TTACGATGAAGGGGAAATTT+GGG | - | chr1_2:9700987-9701006 | Msa0054930:intron | 35.0% | |
| TTTGAACATGTTCCTGCATA+TGG | - | chr1_2:9701052-9701071 | Msa0054930:intron | 35.0% | |
| CATATGGAGATGATAGTTCA+GGG | - | chr1_2:9701068-9701087 | Msa0054930:intron | 35.0% | |
| ATATGGAGATGATAGTTCAG+GGG | - | chr1_2:9701069-9701088 | Msa0054930:intron | 35.0% | |
| TCTTCATCTCAGTTTGATTG+TGG | - | chr1_2:9701102-9701121 | Msa0054930:intron | 35.0% | |
| GATTGTGGATATATCGAAAG+GGG | - | chr1_2:9701117-9701136 | Msa0054930:intron | 35.0% | |
| TTCTGAACATCCAAACTATC+AGG | + | chr1_2:9701181-9701200 | None:intergenic | 35.0% | |
| AACAAATGTACAATAGGCAC+AGG | + | chr1_2:9701284-9701303 | None:intergenic | 35.0% | |
| !! | TTGTTGTTTGGTGGAAATGA+AGG | - | chr1_2:9701299-9701318 | Msa0054930:intron | 35.0% |
| ATTTGATGCGTTAAGAGTTG+TGG | - | chr1_2:9701411-9701430 | Msa0054930:intron | 35.0% | |
| ! | TGATAGCTTAAGGATTTGCT+TGG | - | chr1_2:9701525-9701544 | Msa0054930:CDS | 35.0% |
| CAGTAACCAAAGTGAAAACA+AGG | + | chr1_2:9701607-9701626 | None:intergenic | 35.0% | |
| ! | CTGTTTAAATTGTTGGTTGC+AGG | - | chr1_2:9701901-9701920 | Msa0054930:intron | 35.0% |
| CAAAACTTCTCCTGAATCTT+AGG | + | chr1_2:9701936-9701955 | None:intergenic | 35.0% | |
| ACACGAGTATATGATGAACA+AGG | - | chr1_2:9702004-9702023 | Msa0054930:intron | 35.0% | |
| !! | AATTGAACTTCTAAGGTGGA+TGG | - | chr1_2:9702031-9702050 | Msa0054930:intron | 35.0% |
| ! | TCTTTTGTGGAAAAATAGGC+TGG | - | chr1_2:9702065-9702084 | Msa0054930:intron | 35.0% |
| GAAAAATAGGCTGGTAAGTT+TGG | - | chr1_2:9702074-9702093 | Msa0054930:intron | 35.0% | |
| ! | ACACCAAGTTTTACCATTGT+AGG | - | chr1_2:9702116-9702135 | Msa0054930:CDS | 35.0% |
| CCGTAAGAATGTTAAGCATT+AGG | - | chr1_2:9702212-9702231 | Msa0054930:CDS | 35.0% | |
| ! | AACTCTCTGTTTTCGTACAT+GGG | - | chr1_2:9702256-9702275 | Msa0054930:CDS | 35.0% |
| TGCAGTTGAACGATGAAAAA+TGG | + | chr1_2:9700427-9700446 | None:intergenic | 35.0% | |
| !! | GAGAGAACATTACTGATTCT+AGG | + | chr1_2:9700547-9700566 | None:intergenic | 35.0% |
| GTTGGATTCAAATGGAGATT+TGG | + | chr1_2:9700617-9700636 | None:intergenic | 35.0% | |
| CGCAAAATGTTGGATTCAAA+TGG | + | chr1_2:9700625-9700644 | None:intergenic | 35.0% | |
| CTTGATACTCGATTTCGTTA+CGG | + | chr1_2:9700654-9700673 | None:intergenic | 35.0% | |
| !! | TTTTTCGAAGTGGGTAATTG+CGG | - | chr1_2:9700857-9700876 | Msa0054930:intron | 35.0% |
| AACGATTTGAATTCTGTCAC+AGG | + | chr1_2:9700935-9700954 | None:intergenic | 35.0% | |
| TTTATTGTTGAAGAGAGACC+TGG | - | chr1_2:9700953-9700972 | Msa0054930:intron | 35.0% | |
| TTACGATGAAGGGGAAATTT+GGG | - | chr1_2:9700987-9701006 | Msa0054930:intron | 35.0% | |
| TTTGAACATGTTCCTGCATA+TGG | - | chr1_2:9701052-9701071 | Msa0054930:intron | 35.0% | |
| CATATGGAGATGATAGTTCA+GGG | - | chr1_2:9701068-9701087 | Msa0054930:intron | 35.0% | |
| ATATGGAGATGATAGTTCAG+GGG | - | chr1_2:9701069-9701088 | Msa0054930:intron | 35.0% | |
| TCTTCATCTCAGTTTGATTG+TGG | - | chr1_2:9701102-9701121 | Msa0054930:intron | 35.0% | |
| GATTGTGGATATATCGAAAG+GGG | - | chr1_2:9701117-9701136 | Msa0054930:intron | 35.0% | |
| TTCTGAACATCCAAACTATC+AGG | + | chr1_2:9701181-9701200 | None:intergenic | 35.0% | |
| AACAAATGTACAATAGGCAC+AGG | + | chr1_2:9701284-9701303 | None:intergenic | 35.0% | |
| !! | TTGTTGTTTGGTGGAAATGA+AGG | - | chr1_2:9701299-9701318 | Msa0054930:intron | 35.0% |
| ATTTGATGCGTTAAGAGTTG+TGG | - | chr1_2:9701411-9701430 | Msa0054930:intron | 35.0% | |
| ! | TGATAGCTTAAGGATTTGCT+TGG | - | chr1_2:9701525-9701544 | Msa0054930:CDS | 35.0% |
| CAGTAACCAAAGTGAAAACA+AGG | + | chr1_2:9701607-9701626 | None:intergenic | 35.0% | |
| ! | CTGTTTAAATTGTTGGTTGC+AGG | - | chr1_2:9701901-9701920 | Msa0054930:intron | 35.0% |
| CAAAACTTCTCCTGAATCTT+AGG | + | chr1_2:9701936-9701955 | None:intergenic | 35.0% | |
| ACACGAGTATATGATGAACA+AGG | - | chr1_2:9702004-9702023 | Msa0054930:intron | 35.0% | |
| !! | AATTGAACTTCTAAGGTGGA+TGG | - | chr1_2:9702031-9702050 | Msa0054930:intron | 35.0% |
| ! | TCTTTTGTGGAAAAATAGGC+TGG | - | chr1_2:9702065-9702084 | Msa0054930:intron | 35.0% |
| GAAAAATAGGCTGGTAAGTT+TGG | - | chr1_2:9702074-9702093 | Msa0054930:intron | 35.0% | |
| ! | ACACCAAGTTTTACCATTGT+AGG | - | chr1_2:9702116-9702135 | Msa0054930:CDS | 35.0% |
| CCGTAAGAATGTTAAGCATT+AGG | - | chr1_2:9702212-9702231 | Msa0054930:CDS | 35.0% | |
| ! | AACTCTCTGTTTTCGTACAT+GGG | - | chr1_2:9702256-9702275 | Msa0054930:CDS | 35.0% |
| CGAATAAGAACAGACATGTC+TGG | + | chr1_2:9700481-9700500 | None:intergenic | 40.0% | |
| AATGTTCTCTCTCAAACCTC+AGG | - | chr1_2:9700556-9700575 | Msa0054930:three_prime_UTR | 40.0% | |
| ACGGAGAATTCGCAAAATGT+TGG | + | chr1_2:9700635-9700654 | None:intergenic | 40.0% | |
| ! | TTTTCGAAGTGGGTAATTGC+GGG | - | chr1_2:9700858-9700877 | Msa0054930:intron | 40.0% |
| !! | GTAATTGCGGGTTAGTGATT+TGG | - | chr1_2:9700870-9700889 | Msa0054930:intron | 40.0% |
| GTTACGATGAAGGGGAAATT+TGG | - | chr1_2:9700986-9701005 | Msa0054930:intron | 40.0% | |
| TACGATGAAGGGGAAATTTG+GGG | - | chr1_2:9700988-9701007 | Msa0054930:intron | 40.0% | |
| GAACTATCATCTCCATATGC+AGG | + | chr1_2:9701067-9701086 | None:intergenic | 40.0% | |
| GCATATGGAGATGATAGTTC+AGG | - | chr1_2:9701067-9701086 | Msa0054930:intron | 40.0% | |
| CACAATTGCAGCTACATCAA+TGG | + | chr1_2:9701444-9701463 | None:intergenic | 40.0% | |
| CATTGATGTAGCTGCAATTG+TGG | - | chr1_2:9701442-9701461 | Msa0054930:intron | 40.0% | |
| !!! | ACGACACCTTGTTTTCACTT+TGG | - | chr1_2:9701598-9701617 | Msa0054930:CDS | 40.0% |
| TGAATGCCTTCAAAACGACT+AGG | + | chr1_2:9701851-9701870 | None:intergenic | 40.0% | |
| !!! | TCGTTTTGAAGGCATTCAGT+TGG | - | chr1_2:9701853-9701872 | Msa0054930:intron | 40.0% |
| ! | GAATCTGAAGCCTAAGATTC+AGG | - | chr1_2:9701923-9701942 | Msa0054930:intron | 40.0% |
| ! | GGATAGTCTCAAGTCTTTTG+TGG | - | chr1_2:9702052-9702071 | Msa0054930:intron | 40.0% |
| ATGTTAAGCATTAGGAGGCA+AGG | - | chr1_2:9702220-9702239 | Msa0054930:CDS | 40.0% | |
| TGTTAAGCATTAGGAGGCAA+GGG | - | chr1_2:9702221-9702240 | Msa0054930:CDS | 40.0% | |
| ! | GAACTCTCTGTTTTCGTACA+TGG | - | chr1_2:9702255-9702274 | Msa0054930:CDS | 40.0% |
| CGAATAAGAACAGACATGTC+TGG | + | chr1_2:9700481-9700500 | None:intergenic | 40.0% | |
| AATGTTCTCTCTCAAACCTC+AGG | - | chr1_2:9700556-9700575 | Msa0054930:three_prime_UTR | 40.0% | |
| ACGGAGAATTCGCAAAATGT+TGG | + | chr1_2:9700635-9700654 | None:intergenic | 40.0% | |
| ! | TTTTCGAAGTGGGTAATTGC+GGG | - | chr1_2:9700858-9700877 | Msa0054930:intron | 40.0% |
| !! | GTAATTGCGGGTTAGTGATT+TGG | - | chr1_2:9700870-9700889 | Msa0054930:intron | 40.0% |
| GTTACGATGAAGGGGAAATT+TGG | - | chr1_2:9700986-9701005 | Msa0054930:intron | 40.0% | |
| TACGATGAAGGGGAAATTTG+GGG | - | chr1_2:9700988-9701007 | Msa0054930:intron | 40.0% | |
| GAACTATCATCTCCATATGC+AGG | + | chr1_2:9701067-9701086 | None:intergenic | 40.0% | |
| GCATATGGAGATGATAGTTC+AGG | - | chr1_2:9701067-9701086 | Msa0054930:intron | 40.0% | |
| CACAATTGCAGCTACATCAA+TGG | + | chr1_2:9701444-9701463 | None:intergenic | 40.0% | |
| CATTGATGTAGCTGCAATTG+TGG | - | chr1_2:9701442-9701461 | Msa0054930:intron | 40.0% | |
| !!! | ACGACACCTTGTTTTCACTT+TGG | - | chr1_2:9701598-9701617 | Msa0054930:CDS | 40.0% |
| TGAATGCCTTCAAAACGACT+AGG | + | chr1_2:9701851-9701870 | None:intergenic | 40.0% | |
| !!! | TCGTTTTGAAGGCATTCAGT+TGG | - | chr1_2:9701853-9701872 | Msa0054930:intron | 40.0% |
| ! | GAATCTGAAGCCTAAGATTC+AGG | - | chr1_2:9701923-9701942 | Msa0054930:intron | 40.0% |
| ! | GGATAGTCTCAAGTCTTTTG+TGG | - | chr1_2:9702052-9702071 | Msa0054930:intron | 40.0% |
| ATGTTAAGCATTAGGAGGCA+AGG | - | chr1_2:9702220-9702239 | Msa0054930:CDS | 40.0% | |
| TGTTAAGCATTAGGAGGCAA+GGG | - | chr1_2:9702221-9702240 | Msa0054930:CDS | 40.0% | |
| ! | GAACTCTCTGTTTTCGTACA+TGG | - | chr1_2:9702255-9702274 | Msa0054930:CDS | 40.0% |
| AGCTCTGTTACTGAAACCTG+AGG | + | chr1_2:9700575-9700594 | None:intergenic | 45.0% | |
| ! | AGAATAGTGGGAACCTGATG+AGG | + | chr1_2:9700691-9700710 | None:intergenic | 45.0% |
| TGAGCAAGTGGTTACGATGA+AGG | - | chr1_2:9700976-9700995 | Msa0054930:intron | 45.0% | |
| GAGCAAGTGGTTACGATGAA+GGG | - | chr1_2:9700977-9700996 | Msa0054930:intron | 45.0% | |
| AGCAAGTGGTTACGATGAAG+GGG | - | chr1_2:9700978-9700997 | Msa0054930:intron | 45.0% | |
| GTGGATATATCGAAAGGGGA+AGG | - | chr1_2:9701121-9701140 | Msa0054930:intron | 45.0% | |
| GATATATCGAAAGGGGAAGG+TGG | - | chr1_2:9701124-9701143 | Msa0054930:intron | 45.0% | |
| CTGAAATCAGGTCCAAGGTA+AGG | + | chr1_2:9701241-9701260 | None:intergenic | 45.0% | |
| CTTACCTTGGACCTGATTTC+AGG | - | chr1_2:9701239-9701258 | Msa0054930:intron | 45.0% | |
| CAAACCTGAAATCAGGTCCA+AGG | + | chr1_2:9701246-9701265 | None:intergenic | 45.0% | |
| CGACTTTGCAGTCATAGTCA+AGG | - | chr1_2:9701486-9701505 | Msa0054930:intron | 45.0% | |
| ! | GGAGAAGTTTTGCGAGTACT+TGG | - | chr1_2:9701944-9701963 | Msa0054930:intron | 45.0% |
| AGCTCTGTTACTGAAACCTG+AGG | + | chr1_2:9700575-9700594 | None:intergenic | 45.0% | |
| ! | AGAATAGTGGGAACCTGATG+AGG | + | chr1_2:9700691-9700710 | None:intergenic | 45.0% |
| TGAGCAAGTGGTTACGATGA+AGG | - | chr1_2:9700976-9700995 | Msa0054930:intron | 45.0% | |
| GAGCAAGTGGTTACGATGAA+GGG | - | chr1_2:9700977-9700996 | Msa0054930:intron | 45.0% | |
| AGCAAGTGGTTACGATGAAG+GGG | - | chr1_2:9700978-9700997 | Msa0054930:intron | 45.0% | |
| GTGGATATATCGAAAGGGGA+AGG | - | chr1_2:9701121-9701140 | Msa0054930:intron | 45.0% | |
| GATATATCGAAAGGGGAAGG+TGG | - | chr1_2:9701124-9701143 | Msa0054930:intron | 45.0% | |
| CTGAAATCAGGTCCAAGGTA+AGG | + | chr1_2:9701241-9701260 | None:intergenic | 45.0% | |
| CTTACCTTGGACCTGATTTC+AGG | - | chr1_2:9701239-9701258 | Msa0054930:intron | 45.0% | |
| CAAACCTGAAATCAGGTCCA+AGG | + | chr1_2:9701246-9701265 | None:intergenic | 45.0% | |
| CGACTTTGCAGTCATAGTCA+AGG | - | chr1_2:9701486-9701505 | Msa0054930:intron | 45.0% | |
| ! | GGAGAAGTTTTGCGAGTACT+TGG | - | chr1_2:9701944-9701963 | Msa0054930:intron | 45.0% |
| TGAATACGCTCCTCCTCATC+AGG | - | chr1_2:9700675-9700694 | Msa0054930:exon | 50.0% | |
| ! | ATAGTGGGAACCTGATGAGG+AGG | + | chr1_2:9700688-9700707 | None:intergenic | 50.0% |
| ATCGTAACCACTTGCTCACC+AGG | + | chr1_2:9700974-9700993 | None:intergenic | 50.0% | |
| TAGAATTCGTCTGCTCAGCG+TGG | - | chr1_2:9701155-9701174 | Msa0054930:intron | 50.0% | |
| ! | ATGTCGACTAGGCCTTACCT+TGG | - | chr1_2:9701226-9701245 | Msa0054930:intron | 50.0% |
| !! | CGAAGGCCTAGTCGTTTTGA+AGG | - | chr1_2:9701842-9701861 | Msa0054930:intron | 50.0% |
| TTTGCGAGTACTTGGACGCA+AGG | - | chr1_2:9701952-9701971 | Msa0054930:intron | 50.0% | |
| TTGCGAGTACTTGGACGCAA+GGG | - | chr1_2:9701953-9701972 | Msa0054930:intron | 50.0% | |
| TGAATACGCTCCTCCTCATC+AGG | - | chr1_2:9700675-9700694 | Msa0054930:exon | 50.0% | |
| ! | ATAGTGGGAACCTGATGAGG+AGG | + | chr1_2:9700688-9700707 | None:intergenic | 50.0% |
| ATCGTAACCACTTGCTCACC+AGG | + | chr1_2:9700974-9700993 | None:intergenic | 50.0% | |
| TAGAATTCGTCTGCTCAGCG+TGG | - | chr1_2:9701155-9701174 | Msa0054930:intron | 50.0% | |
| ! | ATGTCGACTAGGCCTTACCT+TGG | - | chr1_2:9701226-9701245 | Msa0054930:intron | 50.0% |
| !! | CGAAGGCCTAGTCGTTTTGA+AGG | - | chr1_2:9701842-9701861 | Msa0054930:intron | 50.0% |
| TTTGCGAGTACTTGGACGCA+AGG | - | chr1_2:9701952-9701971 | Msa0054930:intron | 50.0% | |
| TTGCGAGTACTTGGACGCAA+GGG | - | chr1_2:9701953-9701972 | Msa0054930:intron | 50.0% | |
| AGAGAGACCTGGTGAGCAAG+TGG | - | chr1_2:9700964-9700983 | Msa0054930:intron | 55.0% | |
| CTCAGCGTGGCCTGATAGTT+TGG | - | chr1_2:9701168-9701187 | Msa0054930:intron | 55.0% | |
| ! | AGCGAGGGAAGATGTCGACT+AGG | - | chr1_2:9701215-9701234 | Msa0054930:intron | 55.0% |
| GTAGCTGCAATTGTGGTCGC+AGG | - | chr1_2:9701449-9701468 | Msa0054930:intron | 55.0% | |
| TGCGAGTACTTGGACGCAAG+GGG | - | chr1_2:9701954-9701973 | Msa0054930:intron | 55.0% | |
| AGAGAGACCTGGTGAGCAAG+TGG | - | chr1_2:9700964-9700983 | Msa0054930:intron | 55.0% | |
| CTCAGCGTGGCCTGATAGTT+TGG | - | chr1_2:9701168-9701187 | Msa0054930:intron | 55.0% | |
| ! | AGCGAGGGAAGATGTCGACT+AGG | - | chr1_2:9701215-9701234 | Msa0054930:intron | 55.0% |
| GTAGCTGCAATTGTGGTCGC+AGG | - | chr1_2:9701449-9701468 | Msa0054930:intron | 55.0% | |
| TGCGAGTACTTGGACGCAAG+GGG | - | chr1_2:9701954-9701973 | Msa0054930:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9700363 | 9702412 | 9700363 | ID=Msa0054930;Name=Msa0054930 |
| chr1_2 | mRNA | 9700363 | 9702412 | 9700363 | ID=Msa0054930-mRNA-1;Parent=Msa0054930;Name=Msa0054930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|3|330|233 |
| chr1_2 | exon | 9700363 | 9700852 | 9700363 | ID=Msa0054930-mRNA-1:exon:3624;Parent=Msa0054930-mRNA-1 |
| chr1_2 | exon | 9701515 | 9701843 | 9701515 | ID=Msa0054930-mRNA-1:exon:3623;Parent=Msa0054930-mRNA-1 |
| chr1_2 | exon | 9702079 | 9702412 | 9702079 | ID=Msa0054930-mRNA-1:exon:3622;Parent=Msa0054930-mRNA-1 |
| chr1_2 | five_prime_UTR | 9702292 | 9702412 | 9702292 | ID=Msa0054930-mRNA-1:five_prime_utr;Parent=Msa0054930-mRNA-1 |
| chr1_2 | CDS | 9702079 | 9702291 | 9702079 | ID=Msa0054930-mRNA-1:cds;Parent=Msa0054930-mRNA-1 |
| chr1_2 | CDS | 9701515 | 9701843 | 9701515 | ID=Msa0054930-mRNA-1:cds;Parent=Msa0054930-mRNA-1 |
| chr1_2 | CDS | 9700693 | 9700852 | 9700693 | ID=Msa0054930-mRNA-1:cds;Parent=Msa0054930-mRNA-1 |
| chr1_2 | three_prime_UTR | 9700363 | 9700692 | 9700363 | ID=Msa0054930-mRNA-1:three_prime_utr;Parent=Msa0054930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
