AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025730 MtrunA17_Chr1g0180621 100.000 119 0 0 1 119 1 119 2.31e-85 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025730 AT2G36930.1 77.586 116 26 0 3 118 2 117 1.16e-63 192
Msa0025730 AT2G36930.1 61.364 88 26 1 31 118 118 197 4.92e-23 89.0

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGATTTCTTAGGGTTTA+GGG 0.180883 1_1:+49192803 None:intergenic
GATCTGATTTCTTAGGGTTT+AGG 0.197086 1_1:+49192802 None:intergenic
TGCAGCCACTGTACTGATTT+AGG 0.203717 1_1:+49192859 None:intergenic
GCAGCCACTGTACTGATTTA+GGG 0.258130 1_1:+49192860 None:intergenic
ATTAACTTTGGTCCATTATC+TGG 0.259509 1_1:+49189886 None:intergenic
CCTAAGAAATCAGATCAAAA+TGG 0.284489 1_1:-49192795 Msa0025730:exon
AGAAAAGATATAGATTATAT+TGG 0.292914 1_1:+49189747 None:intergenic
CAATAGTGTTGTCCCATTCC+AGG 0.382658 1_1:+49192617 None:intergenic
ATATTGCTTATCTCGTAATA+AGG 0.388431 1_1:+49189788 None:intergenic
CCTCTTGATGAAGATTTGCC+TGG 0.392427 1_1:-49192635 Msa0025730:CDS
GGGATGGGAATGCCAGATAA+TGG 0.398576 1_1:-49189898 Msa0025730:CDS
TGATGAAGATTTGCCTGGAA+TGG 0.414705 1_1:-49192630 Msa0025730:CDS
GTTGAGATTATAGTAGAAAC+TGG 0.420409 1_1:-49189836 Msa0025730:three_prime_UTR
CAACTTGATGCTGATTTAGC+TGG 0.435360 1_1:-49189922 Msa0025730:CDS
CTAAGAAATCAGATCAAAAT+GGG 0.462676 1_1:-49192794 Msa0025730:exon
GATGAAGATTTGCCTGGAAT+GGG 0.472700 1_1:-49192629 Msa0025730:CDS
AGTGGCTGCAGAAGAGTAAG+AGG 0.490072 1_1:-49192846 Msa0025730:five_prime_UTR
AGTTACATAGACATTAACTT+TGG 0.499727 1_1:+49189874 None:intergenic
CTCTTCTTCACCTTCCTGTG+TGG 0.501586 1_1:+49192761 None:intergenic
CTTGATCAAAGGAGATGACA+TGG 0.505141 1_1:-49192702 Msa0025730:CDS
GATCTAAGAGGTAAATTAGG+AGG 0.506513 1_1:+49189718 None:intergenic
AAATCTTCATCAAGAGGTAA+AGG 0.519690 1_1:+49192641 None:intergenic
CGTTCAAAATTCTTGATCAA+AGG 0.529843 1_1:-49192713 Msa0025730:CDS
AAAGGCTTTCTATCTTCTTG+AGG 0.536393 1_1:+49192659 None:intergenic
CTCGTCCCTCACGGCTACAC+TGG 0.536997 1_1:+49191548 None:intergenic
CTTAAAATGCTCGTCCCTCA+CGG 0.540545 1_1:+49191539 None:intergenic
GCTGATTTAGCTGGAGGGAT+GGG 0.562217 1_1:-49189913 Msa0025730:CDS
AGGAAAATGTCCACACAGGA+AGG 0.564358 1_1:-49192771 Msa0025730:CDS
CTTTGCCAGTGTAGCCGTGA+GGG 0.568259 1_1:-49191553 Msa0025730:CDS
CTTGATGCTGATTTAGCTGG+AGG 0.571593 1_1:-49189919 Msa0025730:CDS
TGCTGATTTAGCTGGAGGGA+TGG 0.572336 1_1:-49189914 Msa0025730:CDS
CCAGGCAAATCTTCATCAAG+AGG 0.587128 1_1:+49192635 None:intergenic
ATCTAAGAGGTAAATTAGGA+GGG 0.589139 1_1:+49189719 None:intergenic
GAGAGACATACTCGCAGTGA+AGG 0.592407 1_1:+49192594 None:intergenic
GTGCAGTGTGAAACAAATGA+TGG 0.596101 1_1:-49189962 Msa0025730:intron
GATTATCTCACAAAACTGAC+CGG 0.625245 1_1:-49192736 Msa0025730:CDS
TGCAGTGTGAAACAAATGAT+GGG 0.638754 1_1:-49189961 Msa0025730:intron
TCTTTGCCAGTGTAGCCGTG+AGG 0.645497 1_1:-49191554 Msa0025730:CDS
TTGATGCTGATTTAGCTGGA+GGG 0.659691 1_1:-49189918 Msa0025730:CDS
AGAAATCAGATCAAAATGGG+AGG 0.672358 1_1:-49192791 Msa0025730:exon
GAGTAAGAGGAAGAAACCAG+AGG 0.682179 1_1:-49192833 Msa0025730:five_prime_UTR
TGGGAGGAAAATGTCCACAC+AGG 0.692313 1_1:-49192775 Msa0025730:CDS
TCAGCATCAAGTTGAGTGTG+TGG 0.703337 1_1:+49189931 None:intergenic
AAAACCCTAAATCAGTACAG+TGG 0.719032 1_1:-49192864 Msa0025730:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAACAAATAAACAAATA+GGG + chr1_1:49190903-49190922 None:intergenic 10.0%
!! AATAAAACAAATAAACAAAT+AGG + chr1_1:49190904-49190923 None:intergenic 10.0%
!! TTGTTTATGTAAAATTGATT+CGG - chr1_1:49190144-49190163 Msa0025730:intron 15.0%
!! ACATAAAACATAAATATGTT+TGG + chr1_1:49190426-49190445 None:intergenic 15.0%
!!! ATTTATGTTTTATGTTTGTT+TGG - chr1_1:49190431-49190450 Msa0025730:intron 15.0%
!!! ATAATTGATTTGAACATTTT+TGG + chr1_1:49190671-49190690 None:intergenic 15.0%
!! TTAATTACAAAGTGTAAATT+TGG + chr1_1:49190734-49190753 None:intergenic 15.0%
!! TATTCACTAATATAAAAACA+GGG + chr1_1:49191174-49191193 None:intergenic 15.0%
!! ATATTCACTAATATAAAAAC+AGG + chr1_1:49191175-49191194 None:intergenic 15.0%
!!! GTTTTTATATTAGTGAATAT+TGG - chr1_1:49191175-49191194 Msa0025730:intron 15.0%
!!! TGAAATAATTTAGTTTTTTG+TGG - chr1_1:49192018-49192037 Msa0025730:intron 15.0%
!!! GAAATAATTTAGTTTTTTGT+GGG - chr1_1:49192019-49192038 Msa0025730:intron 15.0%
!!! AAATAATTTAGTTTTTTGTG+GGG - chr1_1:49192020-49192039 Msa0025730:intron 15.0%
!!! TTTTAGAGAATTCTAAATTA+TGG - chr1_1:49192148-49192167 Msa0025730:intron 15.0%
!! TTTAGAGAATTCTAAATTAT+GGG - chr1_1:49192149-49192168 Msa0025730:intron 15.0%
!! AGAAAAGATATAGATTATAT+TGG + chr1_1:49192866-49192885 None:intergenic 15.0%
!!! TGTTTATGTAAAATTGATTC+GGG - chr1_1:49190145-49190164 Msa0025730:intron 20.0%
!! TAGAAAAAAGATTGATTGAT+TGG - chr1_1:49190184-49190203 Msa0025730:intron 20.0%
!! AGAAAAAAGATTGATTGATT+GGG - chr1_1:49190185-49190204 Msa0025730:intron 20.0%
!!! TGTTTTTCTTTAGACTTATA+TGG - chr1_1:49190929-49190948 Msa0025730:intron 20.0%
!!! AACTTTTTTGTTTTTCTCTT+GGG - chr1_1:49190978-49190997 Msa0025730:intron 20.0%
!!! ATTTTAAGACAAAAAAACAC+AGG - chr1_1:49191086-49191105 Msa0025730:intron 20.0%
!! ATTGTATTGCTTTATATTTG+AGG - chr1_1:49191206-49191225 Msa0025730:intron 20.0%
!! AAAATATTTAAGCTAGTAGT+TGG + chr1_1:49191336-49191355 None:intergenic 20.0%
!! TATATATTACTTAGCAAATG+CGG + chr1_1:49192126-49192145 None:intergenic 20.0%
!! TTAGAGAATTCTAAATTATG+GGG - chr1_1:49192150-49192169 Msa0025730:intron 20.0%
!!! GCTGAAATTGAATTATTTTT+CGG - chr1_1:49192369-49192388 Msa0025730:intron 20.0%
!!! CATTTTGATCTGATTTCTTA+GGG + chr1_1:49189817-49189836 None:intergenic 25.0%
! CTAAGAAATCAGATCAAAAT+GGG - chr1_1:49189816-49189835 Msa0025730:three_prime_UTR 25.0%
! TTAAGCTTGAATCAATTGTA+AGG - chr1_1:49190266-49190285 Msa0025730:intron 25.0%
!!! TTTATGTTTGTTTGGTTTTG+CGG - chr1_1:49190439-49190458 Msa0025730:intron 25.0%
!!! TGACAAAAATTGATTTTGAG+TGG - chr1_1:49190462-49190481 Msa0025730:intron 25.0%
!!! CAACTTTTTTGTTTTTCTCT+TGG - chr1_1:49190977-49190996 Msa0025730:intron 25.0%
!!! TATTGGTTGGTTTTTTAATC+TGG - chr1_1:49191001-49191020 Msa0025730:intron 25.0%
! GAATGATCAATAAGATTGAA+AGG + chr1_1:49191150-49191169 None:intergenic 25.0%
! AACATATCTTTCTTTCAGAT+AGG - chr1_1:49191285-49191304 Msa0025730:intron 25.0%
! ACATATCTTTCTTTCAGATA+GGG - chr1_1:49191286-49191305 Msa0025730:intron 25.0%
!! ATTTGACTTATTTAACCCTT+TGG + chr1_1:49191407-49191426 None:intergenic 25.0%
! ATAAGTCAAATAACCATAAC+TGG - chr1_1:49191416-49191435 Msa0025730:intron 25.0%
!!! GGAAAAGCATATTTTACAAA+GGG + chr1_1:49191582-49191601 None:intergenic 25.0%
! AGAATTATTGTAGAATGTTG+TGG - chr1_1:49191675-49191694 Msa0025730:intron 25.0%
!! AGTATGAAGAGTATATCATA+TGG - chr1_1:49191770-49191789 Msa0025730:intron 25.0%
! AAACTATACGAGAAACTATT+AGG - chr1_1:49191822-49191841 Msa0025730:intron 25.0%
! AACTATTAGGAAAGATTTAG+AGG - chr1_1:49191835-49191854 Msa0025730:intron 25.0%
! TAATGAGTTTGATCCAAATA+TGG - chr1_1:49191859-49191878 Msa0025730:intron 25.0%
!! AACATTATGGCGTAATTTTA+TGG - chr1_1:49191892-49191911 Msa0025730:intron 25.0%
!! AGAGTATAGCTTTTCATTAA+AGG - chr1_1:49192554-49192573 Msa0025730:intron 25.0%
! AGTTACATAGACATTAACTT+TGG + chr1_1:49192739-49192758 None:intergenic 25.0%
! ATATTGCTTATCTCGTAATA+AGG + chr1_1:49192825-49192844 None:intergenic 25.0%
ATCTGATTTCTTAGGGTTTA+GGG + chr1_1:49189810-49189829 None:intergenic 30.0%
!! CCATTTTGATCTGATTTCTT+AGG + chr1_1:49189818-49189837 None:intergenic 30.0%
CCTAAGAAATCAGATCAAAA+TGG - chr1_1:49189815-49189834 Msa0025730:three_prime_UTR 30.0%
CGTTCAAAATTCTTGATCAA+AGG - chr1_1:49189897-49189916 Msa0025730:CDS 30.0%
AAATCTTCATCAAGAGGTAA+AGG + chr1_1:49189972-49189991 None:intergenic 30.0%
! AATTGATTCAAGCTTAACCT+AGG + chr1_1:49190263-49190282 None:intergenic 30.0%
AATAACTAATGATTCCGTGT+AGG - chr1_1:49190308-49190327 Msa0025730:intron 30.0%
AAATATGTTTGGTATCACAG+TGG + chr1_1:49190415-49190434 None:intergenic 30.0%
! TACCCTCCAAAATCAATTTT+TGG - chr1_1:49190692-49190711 Msa0025730:intron 30.0%
! TAATTTTGCCTCTTCAAATG+TGG - chr1_1:49190751-49190770 Msa0025730:intron 30.0%
!! TTTGTTTTTCTCTTGGGTAT+TGG - chr1_1:49190984-49191003 Msa0025730:intron 30.0%
ACAAGAAAACACTTCAAAAC+AGG + chr1_1:49191237-49191256 None:intergenic 30.0%
GTATGAACTCATAAAGCAAA+TGG - chr1_1:49191257-49191276 Msa0025730:intron 30.0%
ACAAAATTCAGCTTGATTGA+AGG + chr1_1:49191363-49191382 None:intergenic 30.0%
! CTGAATTTTGTCCTTAATCT+AGG - chr1_1:49191372-49191391 Msa0025730:intron 30.0%
AGACAAGGTATATATAGAAC+TGG + chr1_1:49191531-49191550 None:intergenic 30.0%
TTTAAAGGCAAACTTAGACA+AGG + chr1_1:49191546-49191565 None:intergenic 30.0%
GGAGTAAAAAACTCGTTTAA+AGG + chr1_1:49191561-49191580 None:intergenic 30.0%
!! GGGAAAAGCATATTTTACAA+AGG + chr1_1:49191583-49191602 None:intergenic 30.0%
ATTATTGTAGAATGTTGTGG+TGG - chr1_1:49191678-49191697 Msa0025730:intron 30.0%
AAACTAGATGAGATAGGATT+AGG - chr1_1:49191711-49191730 Msa0025730:intron 30.0%
! ATGAAGAGTATATCATATGG+AGG - chr1_1:49191773-49191792 Msa0025730:intron 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + chr1_1:49191818-49191837 None:intergenic 30.0%
GTTCTATCATAGACCATATT+TGG + chr1_1:49191875-49191894 None:intergenic 30.0%
TGGTCTATGATAGAACATTA+TGG - chr1_1:49191879-49191898 Msa0025730:intron 30.0%
TTTCTTTCGAAACTGCATTT+GGG + chr1_1:49192181-49192200 None:intergenic 30.0%
! TTTGCGCGTATATATTGTTT+TGG - chr1_1:49192249-49192268 Msa0025730:intron 30.0%
AAACATAGAGTTTGCAAGAA+TGG + chr1_1:49192287-49192306 None:intergenic 30.0%
ATGAGGTGGTTAAATTTGAT+TGG + chr1_1:49192419-49192438 None:intergenic 30.0%
!! ATTTAGTTTGCACTATGATG+AGG + chr1_1:49192436-49192455 None:intergenic 30.0%
ATTAACTTTGGTCCATTATC+TGG + chr1_1:49192727-49192746 None:intergenic 30.0%
!! TGTAACTTTCTTTTTCGTAG+TGG - chr1_1:49192752-49192771 Msa0025730:CDS 30.0%
GTTGAGATTATAGTAGAAAC+TGG - chr1_1:49192774-49192793 Msa0025730:CDS 30.0%
AAAACCCTAAATCAGTACAG+TGG - chr1_1:49189746-49189765 Msa0025730:three_prime_UTR 35.0%
GATCTGATTTCTTAGGGTTT+AGG + chr1_1:49189811-49189830 None:intergenic 35.0%
AGAAATCAGATCAAAATGGG+AGG - chr1_1:49189819-49189838 Msa0025730:three_prime_UTR 35.0%
GATTATCTCACAAAACTGAC+CGG - chr1_1:49189874-49189893 Msa0025730:exon 35.0%
! TGATCAAGAATTTTGAACGC+CGG + chr1_1:49189896-49189915 None:intergenic 35.0%
AAAGGCTTTCTATCTTCTTG+AGG + chr1_1:49189954-49189973 None:intergenic 35.0%
AACTTGTGTGTTTGATTCTG+CGG - chr1_1:49190097-49190116 Msa0025730:intron 35.0%
ATTCAAGGGCTAAAGATCAA+TGG - chr1_1:49190219-49190238 Msa0025730:intron 35.0%
AGATGTAAAAGCTCAATCCT+AGG - chr1_1:49190243-49190262 Msa0025730:intron 35.0%
ACTGTGATACTAAACCTACA+CGG + chr1_1:49190325-49190344 None:intergenic 35.0%
ATAATCACAATGATCCACCA+TGG + chr1_1:49190385-49190404 None:intergenic 35.0%
!! ATGGTGGATCATTGTGATTA+TGG - chr1_1:49190384-49190403 Msa0025730:intron 35.0%
!! GGCCAAAAATTGATTTTGGA+GGG + chr1_1:49190697-49190716 None:intergenic 35.0%
! AAATTTGGTTCCACTCTAGA+GGG + chr1_1:49190719-49190738 None:intergenic 35.0%
! TAAATTTGGTTCCACTCTAG+AGG + chr1_1:49190720-49190739 None:intergenic 35.0%
AGAATCAGTAAGTATGTGCT+TGG + chr1_1:49190779-49190798 None:intergenic 35.0%
!!! TTTTTCTCTTGGGTATTGGT+TGG - chr1_1:49190988-49191007 Msa0025730:intron 35.0%
!! TCTGGTATGTGTTGTTCTTT+TGG - chr1_1:49191019-49191038 Msa0025730:intron 35.0%
AGACAAAAAAACACAGGAGA+CGG - chr1_1:49191092-49191111 Msa0025730:intron 35.0%
GGTAAAATGAGCCTAGATTA+AGG + chr1_1:49191386-49191405 None:intergenic 35.0%
! ATCTAGGCTCATTTTACCAA+AGG - chr1_1:49191388-49191407 Msa0025730:intron 35.0%
! TCTAGGCTCATTTTACCAAA+GGG - chr1_1:49191389-49191408 Msa0025730:intron 35.0%
TGGAAGACCTGGTAAAAAAT+TGG - chr1_1:49191436-49191455 Msa0025730:intron 35.0%
AGACCTGGTAAAAAATTGGA+TGG - chr1_1:49191440-49191459 Msa0025730:intron 35.0%
!!! CTTCCATCCAATTTTTTACC+AGG + chr1_1:49191446-49191465 None:intergenic 35.0%
GGTAAAAAATTGGATGGAAG+TGG - chr1_1:49191446-49191465 Msa0025730:intron 35.0%
GGTAAATGAAGTTATGCTTG+TGG - chr1_1:49191467-49191486 Msa0025730:intron 35.0%
GTGGTAAAACTAGATGAGAT+AGG - chr1_1:49191705-49191724 Msa0025730:intron 35.0%
CTTCATACTACAACATCTAC+AGG + chr1_1:49191759-49191778 None:intergenic 35.0%
TATATCATATGGAGGAGAGT+CGG - chr1_1:49191781-49191800 Msa0025730:intron 35.0%
!!! ATTTAGTTTTTTGTGGGGCA+AGG - chr1_1:49192025-49192044 Msa0025730:intron 35.0%
CTTTCTTTCGAAACTGCATT+TGG + chr1_1:49192182-49192201 None:intergenic 35.0%
AGCATTCAAAACTGTGTGTT+AGG - chr1_1:49192200-49192219 Msa0025730:intron 35.0%
TGCAGTGTGAAACAAATGAT+GGG - chr1_1:49192649-49192668 Msa0025730:CDS 35.0%
CTTGATCAAAGGAGATGACA+TGG - chr1_1:49189908-49189927 Msa0025730:CDS 40.0%
TGATGAAGATTTGCCTGGAA+TGG - chr1_1:49189980-49189999 Msa0025730:intron 40.0%
GATGAAGATTTGCCTGGAAT+GGG - chr1_1:49189981-49190000 Msa0025730:intron 40.0%
! GATTGATTGATTGGGTTGTG+CGG - chr1_1:49190193-49190212 Msa0025730:intron 40.0%
GTGTAGGTTTAGTATCACAG+TGG - chr1_1:49190324-49190343 Msa0025730:intron 40.0%
! TTGGTTGCTTTCGAGTAGAA+TGG + chr1_1:49190652-49190671 None:intergenic 40.0%
!! GGGCCAAAAATTGATTTTGG+AGG + chr1_1:49190698-49190717 None:intergenic 40.0%
!! GAGGGGCCAAAAATTGATTT+TGG + chr1_1:49190701-49190720 None:intergenic 40.0%
! AATTTGGTTCCACTCTAGAG+GGG + chr1_1:49190718-49190737 None:intergenic 40.0%
ATAACCATAACTGGAAGACC+TGG - chr1_1:49191425-49191444 Msa0025730:intron 40.0%
TTTACCAGGTCTTCCAGTTA+TGG + chr1_1:49191432-49191451 None:intergenic 40.0%
TCTACAGGTCTTCTCTCTAA+TGG + chr1_1:49191744-49191763 None:intergenic 40.0%
CTTATCCCACTAAGTGAGAT+CGG + chr1_1:49191924-49191943 None:intergenic 40.0%
GCTTAGTCGTTGTTGTATTC+TGG - chr1_1:49191944-49191963 Msa0025730:intron 40.0%
TGCAGTGAACTAGAAGCAAT+GGG + chr1_1:49192343-49192362 None:intergenic 40.0%
ATGCAGTGAACTAGAAGCAA+TGG + chr1_1:49192344-49192363 None:intergenic 40.0%
! TAGTTTGCACTATGATGAGG+TGG + chr1_1:49192433-49192452 None:intergenic 40.0%
GTGCAGTGTGAAACAAATGA+TGG - chr1_1:49192648-49192667 Msa0025730:CDS 40.0%
!! CAACTTGATGCTGATTTAGC+TGG - chr1_1:49192688-49192707 Msa0025730:CDS 40.0%
!! TTGATGCTGATTTAGCTGGA+GGG - chr1_1:49192692-49192711 Msa0025730:CDS 40.0%
!! GCAGCCACTGTACTGATTTA+GGG + chr1_1:49189753-49189772 None:intergenic 45.0%
!! TGCAGCCACTGTACTGATTT+AGG + chr1_1:49189754-49189773 None:intergenic 45.0%
GAGTAAGAGGAAGAAACCAG+AGG - chr1_1:49189777-49189796 Msa0025730:three_prime_UTR 45.0%
!! GGTTTAGGGTTTTTCACCTC+TGG + chr1_1:49189796-49189815 None:intergenic 45.0%
AGGAAAATGTCCACACAGGA+AGG - chr1_1:49189839-49189858 Msa0025730:three_prime_UTR 45.0%
CCAGGCAAATCTTCATCAAG+AGG + chr1_1:49189978-49189997 None:intergenic 45.0%
CCTCTTGATGAAGATTTGCC+TGG - chr1_1:49189975-49189994 Msa0025730:intron 45.0%
CAATAGTGTTGTCCCATTCC+AGG + chr1_1:49189996-49190015 None:intergenic 45.0%
TGGGTTGTGCGGTAAATTCA+AGG - chr1_1:49190204-49190223 Msa0025730:intron 45.0%
GGGTTGTGCGGTAAATTCAA+GGG - chr1_1:49190205-49190224 Msa0025730:intron 45.0%
! AATGATCCACCATGGTGTCA+TGG + chr1_1:49190377-49190396 None:intergenic 45.0%
!!! AATTTTTGGCCCCTCTAGAG+TGG - chr1_1:49190706-49190725 Msa0025730:intron 45.0%
GCTTGGTTCCACATTTGAAG+AGG + chr1_1:49190762-49190781 None:intergenic 45.0%
TGCACTGTCACACAAAGTGT+AGG - chr1_1:49190832-49190851 Msa0025730:intron 45.0%
GTGTAGGTAGCGTACAACTT+TGG - chr1_1:49190848-49190867 Msa0025730:intron 45.0%
CTTAAAATGCTCGTCCCTCA+CGG + chr1_1:49191074-49191093 None:intergenic 45.0%
GCAAGTCTGCAATATCAGCT+GGG + chr1_1:49191603-49191622 None:intergenic 45.0%
TGCAAGTCTGCAATATCAGC+TGG + chr1_1:49191604-49191623 None:intergenic 45.0%
!! AGAATGTTGTGGTGGATGAG+TGG - chr1_1:49191686-49191705 Msa0025730:intron 45.0%
ATGTTGCCGATCTCACTTAG+TGG - chr1_1:49191915-49191934 Msa0025730:intron 45.0%
TGTTGCCGATCTCACTTAGT+GGG - chr1_1:49191916-49191935 Msa0025730:intron 45.0%
CGATCTCACTTAGTGGGATA+AGG - chr1_1:49191922-49191941 Msa0025730:intron 45.0%
! TTTTTGTGGGGCAAGGTTGA+TGG - chr1_1:49192032-49192051 Msa0025730:intron 45.0%
!! TCAGCATCAAGTTGAGTGTG+TGG + chr1_1:49192682-49192701 None:intergenic 45.0%
!! CTTGATGCTGATTTAGCTGG+AGG - chr1_1:49192691-49192710 Msa0025730:CDS 45.0%
AGTGGCTGCAGAAGAGTAAG+AGG - chr1_1:49189764-49189783 Msa0025730:three_prime_UTR 50.0%
TGGGAGGAAAATGTCCACAC+AGG - chr1_1:49189835-49189854 Msa0025730:three_prime_UTR 50.0%
CTCTTCTTCACCTTCCTGTG+TGG + chr1_1:49189852-49189871 None:intergenic 50.0%
GAGAGACATACTCGCAGTGA+AGG + chr1_1:49190019-49190038 None:intergenic 50.0%
ATGCCAACACCATGACACCA+TGG - chr1_1:49190365-49190384 Msa0025730:intron 50.0%
!! TGCTGATTTAGCTGGAGGGA+TGG - chr1_1:49192696-49192715 Msa0025730:CDS 50.0%
! GCTGATTTAGCTGGAGGGAT+GGG - chr1_1:49192697-49192716 Msa0025730:CDS 50.0%
GGGATGGGAATGCCAGATAA+TGG - chr1_1:49192712-49192731 Msa0025730:CDS 50.0%
!! CCACCATGGTGTCATGGTGT+TGG + chr1_1:49190371-49190390 None:intergenic 55.0%
CCAACACCATGACACCATGG+TGG - chr1_1:49190368-49190387 Msa0025730:intron 55.0%
TCTTTGCCAGTGTAGCCGTG+AGG - chr1_1:49191056-49191075 Msa0025730:intron 55.0%
CTTTGCCAGTGTAGCCGTGA+GGG - chr1_1:49191057-49191076 Msa0025730:intron 55.0%
CTCGTCCCTCACGGCTACAC+TGG + chr1_1:49191065-49191084 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49189733 49192899 49189733 ID=Msa0025730;Name=Msa0025730
chr1_1 mRNA 49189733 49192899 49189733 ID=Msa0025730-mRNA-1;Parent=Msa0025730;Name=Msa0025730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=101|1|1|1|1|1|3|143|119
chr1_1 exon 49189733 49189978 49189733 ID=Msa0025730-mRNA-1:exon:14214;Parent=Msa0025730-mRNA-1
chr1_1 exon 49191519 49191581 49191519 ID=Msa0025730-mRNA-1:exon:14213;Parent=Msa0025730-mRNA-1
chr1_1 exon 49192605 49192899 49192605 ID=Msa0025730-mRNA-1:exon:14212;Parent=Msa0025730-mRNA-1
chr1_1 five_prime_UTR 49192799 49192899 49192799 ID=Msa0025730-mRNA-1:five_prime_utr;Parent=Msa0025730-mRNA-1
chr1_1 CDS 49192605 49192798 49192605 ID=Msa0025730-mRNA-1:cds;Parent=Msa0025730-mRNA-1
chr1_1 CDS 49191519 49191581 49191519 ID=Msa0025730-mRNA-1:cds;Parent=Msa0025730-mRNA-1
chr1_1 CDS 49189876 49189978 49189876 ID=Msa0025730-mRNA-1:cds;Parent=Msa0025730-mRNA-1
chr1_1 three_prime_UTR 49189733 49189875 49189733 ID=Msa0025730-mRNA-1:three_prime_utr;Parent=Msa0025730-mRNA-1
Gene Sequence

>Msa0025730

ATGGGAGGAAAATGTCCACACAGGAAGGTGAAGAAGAGAAGATTATCTCACAAAACTGACCGGCGTTCAAAATTCTTGATCAAAGGAGATGACATGGTTTATGATGAATTGAATAAGCCTCAAGAAGATAGAAAGCCTTTACCTCTTGATGAAGATTTGCCTGGAATGGGACAACACTATTGCCTTCACTGCGATCGATTCTTTGCCAGTGTAGCCGTGAGGGACGAGCATTTTAAGACAAAAAAACACAGGAGACGTGTGAAACAAATGATGGGCGATGCACCACACACTCAACTTGATGCTGATTTAGCTGGAGGGATGGGAATGCCAGATAATGGACCAAAGTTAATGTCTATGTAA

Protein sequence

>Msa0025730

MGGKCPHRKVKKRRLSHKTDRRSKFLIKGDDMVYDELNKPQEDRKPLPLDEDLPGMGQHYCLHCDRFFASVAVRDEHFKTKKHRRRVKQMMGDAPHTQLDADLAGGMGMPDNGPKLMSM*