Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320150 | XP_003594832.1 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 3.36e-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320150 | sp|P93333|PR101_MEDTR | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 1.35e-94 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0320150 | 0.810147 | 1.331757e-50 | -8.615850e-47 |
| Msa0027860 | Msa0320150 | 0.807017 | 6.208421e-50 | -8.615850e-47 |
| Msa0059880 | Msa0320150 | 0.807048 | 6.115340e-50 | -8.615850e-47 |
| Msa0150910 | Msa0320150 | 0.818330 | 2.074191e-52 | -8.615850e-47 |
| Msa0160580 | Msa0320150 | 0.800460 | 1.426545e-48 | -8.615850e-47 |
| Msa0190670 | Msa0320150 | 0.805367 | 1.381256e-49 | -8.615850e-47 |
| Msa0252930 | Msa0320150 | 0.800979 | 1.117535e-48 | -8.615850e-47 |
| Msa0274260 | Msa0320150 | 0.808516 | 2.981002e-50 | -8.615850e-47 |
| Msa0278950 | Msa0320150 | 0.803639 | 3.166553e-49 | -8.615850e-47 |
| Msa0280980 | Msa0320150 | 0.965035 | 4.381741e-124 | -8.615850e-47 |
| Msa0320150 | Msa0366510 | 0.808518 | 2.977667e-50 | -8.615850e-47 |
| Msa0320150 | Msa0374040 | 0.819362 | 1.208506e-52 | -8.615850e-47 |
| Msa0320150 | Msa0396700 | 0.806448 | 8.185895e-50 | -8.615850e-47 |
| Msa0320150 | Msa0396790 | 0.801670 | 8.068691e-49 | -8.615850e-47 |
| Msa0320150 | Msa0414480 | 0.812555 | 3.997908e-51 | -8.615850e-47 |
| Msa0320150 | Msa0444400 | 0.805080 | 1.586777e-49 | -8.615850e-47 |
| Msa0320150 | Msa0469450 | 0.807017 | 6.208186e-50 | -8.615850e-47 |
| Msa0320150 | Msa0491800 | 0.805472 | 1.312966e-49 | -8.615850e-47 |
| Msa0320150 | Msa0493710 | 0.800890 | 1.165705e-48 | -8.615850e-47 |
| Msa0320150 | Msa0507600 | 0.800973 | 1.120978e-48 | -8.615850e-47 |
| Msa0320150 | Msa0515130 | 0.815259 | 1.013394e-51 | -8.615850e-47 |
| Msa0320150 | Msa0515150 | 0.817976 | 2.493845e-52 | -8.615850e-47 |
| Msa0320150 | Msa0535570 | 0.835637 | 1.494174e-56 | -8.615850e-47 |
| Msa0320150 | Msa0543740 | 0.811668 | 6.238832e-51 | -8.615850e-47 |
| Msa0320150 | Msa0554660 | 0.813614 | 2.341388e-51 | -8.615850e-47 |
| Msa0320150 | Msa0591490 | 0.840014 | 1.121956e-57 | -8.615850e-47 |
| Msa0320150 | Msa0631700 | 0.839098 | 1.941255e-57 | -8.615850e-47 |
| Msa0320150 | Msa0640290 | 0.807521 | 4.854183e-50 | -8.615850e-47 |
| Msa0320150 | Msa0643840 | 0.811274 | 7.598782e-51 | -8.615850e-47 |
| Msa0320150 | Msa0670360 | 0.833935 | 4.007240e-56 | -8.615850e-47 |
| Msa0320150 | Msa0671640 | 0.801170 | 1.021767e-48 | -8.615850e-47 |
| Msa0320150 | Msa0678620 | 0.818482 | 1.915524e-52 | -8.615850e-47 |
| Msa0320150 | Msa0692090 | 0.802131 | 6.487926e-49 | -8.615850e-47 |
| Msa0320150 | Msa0708680 | 0.800458 | 1.427935e-48 | -8.615850e-47 |
| Msa0320150 | Msa0727480 | 0.825355 | 4.905011e-54 | -8.615850e-47 |
| Msa0320150 | Msa0735140 | 0.806160 | 9.412522e-50 | -8.615850e-47 |
| Msa0320150 | Msa0735280 | 0.804013 | 2.648533e-49 | -8.615850e-47 |
| Msa0320150 | Msa0751960 | 0.813602 | 2.355023e-51 | -8.615850e-47 |
| Msa0320150 | Msa0768670 | 0.813854 | 2.073373e-51 | -8.615850e-47 |
| Msa0320150 | Msa0768720 | 0.802272 | 6.070207e-49 | -8.615850e-47 |
| Msa0320150 | Msa0787860 | 0.809794 | 1.586590e-50 | -8.615850e-47 |
| Msa0320150 | Msa0806930 | 0.802579 | 5.248059e-49 | -8.615850e-47 |
| Msa0320150 | Msa0814160 | 0.802441 | 5.602272e-49 | -8.615850e-47 |
| Msa0320150 | Msa0816140 | 0.815473 | 9.082363e-52 | -8.615850e-47 |
| Msa0320150 | Msa0824850 | 0.818531 | 1.867739e-52 | -8.615850e-47 |
| Msa0320150 | Msa0854840 | 0.808236 | 3.419478e-50 | -8.615850e-47 |
| Msa0320150 | Msa0863840 | 0.814631 | 1.396357e-51 | -8.615850e-47 |
| Msa0320150 | Msa0863850 | 0.822240 | 2.632607e-53 | -8.615850e-47 |
| Msa0320150 | Msa0863860 | 0.808260 | 3.380514e-50 | -8.615850e-47 |
| Msa0320150 | Msa0864160 | 0.824518 | 7.730963e-54 | -8.615850e-47 |
| Msa0320150 | Msa0896920 | 0.822692 | 2.067678e-53 | -8.615850e-47 |
| Msa0320150 | Msa0910830 | 0.804073 | 2.573772e-49 | -8.615850e-47 |
| Msa0320150 | Msa0913550 | 0.843657 | 1.224184e-58 | -8.615850e-47 |
| Msa0320150 | Msa0960090 | 0.801098 | 1.056626e-48 | -8.615850e-47 |
| Msa0320150 | Msa0985700 | 0.801425 | 9.058908e-49 | -8.615850e-47 |
| Msa0320150 | Msa0993450 | 0.806382 | 8.451661e-50 | -8.615850e-47 |
| Msa0320150 | Msa1007930 | 0.806461 | 8.132988e-50 | -8.615850e-47 |
| Msa0320150 | Msa1021620 | 0.803094 | 4.107707e-49 | -8.615850e-47 |
| Msa0320150 | Msa1022490 | 0.802603 | 5.188086e-49 | -8.615850e-47 |
| Msa0320150 | Msa1022510 | 0.809553 | 1.787480e-50 | -8.615850e-47 |
| Msa0320150 | Msa1061670 | 0.840905 | 6.560888e-58 | -8.615850e-47 |
| Msa0320150 | Msa1063210 | 0.800587 | 1.343595e-48 | -8.615850e-47 |
| Msa0320150 | Msa1064940 | 0.829175 | 5.963092e-55 | -8.615850e-47 |
| Msa0320150 | Msa1087380 | 0.806951 | 6.409549e-50 | -8.615850e-47 |
| Msa0320150 | Msa1099640 | 0.800198 | 1.612994e-48 | -8.615850e-47 |
| Msa0320150 | Msa1106680 | 0.816077 | 6.660060e-52 | -8.615850e-47 |
| Msa0320150 | Msa1106960 | 0.835892 | 1.287806e-56 | -8.615850e-47 |
| Msa0320150 | Msa1138110 | 0.810042 | 1.402932e-50 | -8.615850e-47 |
| Msa0320150 | Msa1147030 | 0.817845 | 2.669018e-52 | -8.615850e-47 |
| Msa0320150 | Msa1153690 | 0.804666 | 1.935765e-49 | -8.615850e-47 |
| Msa0320150 | Msa1156240 | 0.804578 | 2.019403e-49 | -8.615850e-47 |
| Msa0320150 | Msa1170340 | 0.803494 | 3.394804e-49 | -8.615850e-47 |
| Msa0320150 | Msa1191350 | 0.811890 | 5.582766e-51 | -8.615850e-47 |
| Msa0320150 | Msa1238250 | 0.819888 | 9.169019e-53 | -8.615850e-47 |
| Msa0320150 | Msa1300610 | 0.813580 | 2.382321e-51 | -8.615850e-47 |
| Msa0320150 | Msa1319030 | 0.817660 | 2.939007e-52 | -8.615850e-47 |
| Msa0320150 | Msa1411550 | 0.829715 | 4.407942e-55 | -8.615850e-47 |
| Msa0320150 | Msa1453650 | 0.802966 | 4.364888e-49 | -8.615850e-47 |
| Msa0320150 | Msa1459610 | 0.834745 | 2.509441e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320150 | MtrunA17_Chr2g0295051 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 3.09e-107 | 302 |
| Msa0320150 | MtrunA17_Chr2g0295064 | 86.076 | 158 | 22 | 0 | 1 | 158 | 68 | 225 | 4.30e-97 | 279 |
| Msa0320150 | MtrunA17_Chr2g0295021 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 9.94e-96 | 273 |
| Msa0320150 | MtrunA17_Chr2g0295001 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 9.94e-96 | 273 |
| Msa0320150 | MtrunA17_Chr2g0295041 | 86.076 | 158 | 22 | 0 | 1 | 158 | 1 | 158 | 3.40e-95 | 272 |
| Msa0320150 | MtrunA17_Chr4g0067951 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 1.44e-78 | 230 |
| Msa0320150 | MtrunA17_Chr6g0462311 | 68.354 | 158 | 50 | 0 | 1 | 158 | 1 | 158 | 3.13e-77 | 226 |
| Msa0320150 | MtrunA17_Chr6g0462291 | 66.429 | 140 | 47 | 0 | 1 | 140 | 1 | 140 | 3.71e-64 | 194 |
| Msa0320150 | MtrunA17_Chr2g0295141 | 60.510 | 157 | 62 | 0 | 1 | 157 | 1 | 157 | 4.74e-64 | 193 |
| Msa0320150 | MtrunA17_Chr2g0295091 | 58.599 | 157 | 65 | 0 | 1 | 157 | 1 | 157 | 7.20e-62 | 187 |
| Msa0320150 | MtrunA17_Chr2g0295104 | 57.962 | 157 | 66 | 0 | 1 | 157 | 1 | 157 | 3.07e-60 | 183 |
| Msa0320150 | MtrunA17_Chr2g0295124 | 57.325 | 157 | 67 | 0 | 1 | 157 | 1 | 157 | 1.13e-58 | 179 |
| Msa0320150 | MtrunA17_Chr2g0295081 | 56.051 | 157 | 69 | 0 | 1 | 157 | 1 | 157 | 1.55e-57 | 176 |
| Msa0320150 | MtrunA17_Chr2g0295211 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 7.54e-36 | 122 |
| Msa0320150 | MtrunA17_Chr4g0067841 | 38.217 | 157 | 96 | 1 | 1 | 156 | 1 | 157 | 1.56e-35 | 121 |
| Msa0320150 | MtrunA17_Chr4g0067921 | 44.444 | 162 | 83 | 5 | 1 | 158 | 1 | 159 | 2.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGCATAGTTGGTGGTTT+TGG | 0.149266 | 2_4:+20445035 | Msa0320150:CDS |
| TGATGGCATCAATAACCTTT+GGG | 0.301288 | 2_4:-20444132 | None:intergenic |
| AACGATATCAATACTCTTGA+TGG | 0.325047 | 2_4:-20444149 | None:intergenic |
| TTTGCAATGGTTCCTCCATT+TGG | 0.327211 | 2_4:-20445110 | None:intergenic |
| TATATCATGTGTTCTTGATT+TGG | 0.333285 | 2_4:+20445322 | Msa0320150:three_prime_UTR |
| TAGCATATTATAATTCATAA+TGG | 0.337737 | 2_4:+20444021 | Msa0320150:exon |
| TATATGCTTTAGTTGTAATC+AGG | 0.338630 | 2_4:-20445251 | None:intergenic |
| GAAATCTTCTCCACTGTGTC+TGG | 0.343745 | 2_4:-20445062 | None:intergenic |
| TTGATGGCATCAATAACCTT+TGG | 0.345179 | 2_4:-20444133 | None:intergenic |
| ACTAGGTGCAACATCACTTT+TGG | 0.347787 | 2_4:-20445153 | None:intergenic |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2_4:+20445223 | Msa0320150:CDS |
| CACTTTGTGCAACACATACT+TGG | 0.384404 | 2_4:-20444979 | None:intergenic |
| CTTAGTAGATGATGTTAACT+TGG | 0.391360 | 2_4:+20445004 | Msa0320150:CDS |
| AGCATATTATAATTCATAAT+GGG | 0.392129 | 2_4:+20444022 | Msa0320150:exon |
| CATCAATAACCTTTGGGGTA+AGG | 0.433870 | 2_4:-20444126 | None:intergenic |
| AAGAGTATTGATATCGTTGA+AGG | 0.465901 | 2_4:+20444154 | Msa0320150:CDS |
| GCTTACCACTACAGCATAGT+TGG | 0.468258 | 2_4:+20445026 | Msa0320150:CDS |
| AGTGGAGAAGATTTCATTTG+AGG | 0.476098 | 2_4:+20445070 | Msa0320150:CDS |
| AAATTGTCTGCAGGACCAAA+TGG | 0.477800 | 2_4:+20445095 | Msa0320150:CDS |
| AGAGCTTTGTAAAGTGTAGC+AGG | 0.480318 | 2_4:-20444085 | None:intergenic |
| ACTCACACTTCCACAACAAA+AGG | 0.482152 | 2_4:-20445395 | None:intergenic |
| TTTGAGGCTAAATTGTCTGC+AGG | 0.494016 | 2_4:+20445086 | Msa0320150:CDS |
| AATGGCAAAGCTAGGGGTGA+TGG | 0.523022 | 2_4:+20445191 | Msa0320150:CDS |
| TTCTTGAGTTCCTCTTCACT+AGG | 0.524188 | 2_4:-20445170 | None:intergenic |
| TTGCTTGCTTGCTCTATACA+TGG | 0.528688 | 2_4:+20445279 | Msa0320150:three_prime_UTR |
| TGCTTGCTCTATACATGGTG+TGG | 0.535846 | 2_4:+20445284 | Msa0320150:three_prime_UTR |
| CAAGTATGTGTTGCACAAAG+TGG | 0.538293 | 2_4:+20444980 | Msa0320150:CDS |
| AACTCAAGAATGGCAAAGCT+AGG | 0.540466 | 2_4:+20445183 | Msa0320150:CDS |
| ACTCAAGAATGGCAAAGCTA+GGG | 0.556431 | 2_4:+20445184 | Msa0320150:CDS |
| GTTGAAGGAGACGGTGGCGC+CGG | 0.560015 | 2_4:+20444169 | Msa0320150:CDS |
| TGTAGCAGGAGCTACAATAG+AGG | 0.565152 | 2_4:-20444071 | None:intergenic |
| TATTATAATTTACTTAAGCA+AGG | 0.566711 | 2_4:-20445442 | None:intergenic |
| TACCACTACAGCATAGTTGG+TGG | 0.567411 | 2_4:+20445029 | Msa0320150:CDS |
| TTTCACACTAAGCTTTGCAA+TGG | 0.568267 | 2_4:-20445123 | None:intergenic |
| GATGGCATCAATAACCTTTG+GGG | 0.578696 | 2_4:-20444131 | None:intergenic |
| AGTGAAGAGGAACTCAAGAA+TGG | 0.584353 | 2_4:+20445173 | Msa0320150:CDS |
| ATATGCTAACTTGCTACTGA+AGG | 0.585837 | 2_4:-20444006 | None:intergenic |
| ATTGATATCGTTGAAGGAGA+CGG | 0.588878 | 2_4:+20444160 | Msa0320150:CDS |
| AACCACCAACTATGCTGTAG+TGG | 0.607193 | 2_4:-20445031 | None:intergenic |
| TGATGTTGCACCTAGTGAAG+AGG | 0.613714 | 2_4:+20445160 | Msa0320150:CDS |
| TGCTGACAACCTTACCCCAA+AGG | 0.621335 | 2_4:+20444117 | Msa0320150:CDS |
| CTCAAGAATGGCAAAGCTAG+GGG | 0.641253 | 2_4:+20445185 | Msa0320150:CDS |
| AGCAGGAGCTACAATAGAGG+TGG | 0.665165 | 2_4:-20444068 | None:intergenic |
| TTGTCTGCAGGACCAAATGG+AGG | 0.666387 | 2_4:+20445098 | Msa0320150:CDS |
| GATATCGTTGAAGGAGACGG+TGG | 0.715509 | 2_4:+20444163 | Msa0320150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATATAAAATAAT+AGG | + | chr2_4:20444921-20444940 | Msa0320150:intron | 0.0% |
| !!! | TTTTTTATATATAAAATAAT+AGG | + | chr2_4:20444921-20444940 | Msa0320150:intron | 0.0% |
| !! | TAGCATATTATAATTCATAA+TGG | + | chr2_4:20444021-20444040 | Msa0320150:exon | 15.0% |
| !! | AGCATATTATAATTCATAAT+GGG | + | chr2_4:20444022-20444041 | Msa0320150:exon | 15.0% |
| !! | TGATAAAAGAAATTGATAAA+CGG | - | chr2_4:20444450-20444469 | None:intergenic | 15.0% |
| !! | TATTATAATTTACTTAAGCA+AGG | - | chr2_4:20445445-20445464 | None:intergenic | 15.0% |
| !! | TAGCATATTATAATTCATAA+TGG | + | chr2_4:20444021-20444040 | Msa0320150:exon | 15.0% |
| !! | AGCATATTATAATTCATAAT+GGG | + | chr2_4:20444022-20444041 | Msa0320150:exon | 15.0% |
| !! | TGATAAAAGAAATTGATAAA+CGG | - | chr2_4:20444450-20444469 | None:intergenic | 15.0% |
| !! | TATTATAATTTACTTAAGCA+AGG | - | chr2_4:20445445-20445464 | None:intergenic | 15.0% |
| !! | ACTCTTATGATTAACATATT+TGG | + | chr2_4:20444359-20444378 | Msa0320150:intron | 20.0% |
| !!! | ATATTTGGTAGCTAATTAAT+TGG | + | chr2_4:20444374-20444393 | Msa0320150:intron | 20.0% |
| !! | ATCATTACTAGTATTACATA+AGG | + | chr2_4:20444881-20444900 | Msa0320150:intron | 20.0% |
| !! | AAAAAAAGAGAGAATTACAT+TGG | - | chr2_4:20445351-20445370 | None:intergenic | 20.0% |
| !! | ACTCTTATGATTAACATATT+TGG | + | chr2_4:20444359-20444378 | Msa0320150:intron | 20.0% |
| !!! | ATATTTGGTAGCTAATTAAT+TGG | + | chr2_4:20444374-20444393 | Msa0320150:intron | 20.0% |
| !! | ATCATTACTAGTATTACATA+AGG | + | chr2_4:20444881-20444900 | Msa0320150:intron | 20.0% |
| !! | AAAAAAAGAGAGAATTACAT+TGG | - | chr2_4:20445351-20445370 | None:intergenic | 20.0% |
| !! | AACAAAAGTGATTTTCTTGA+TGG | - | chr2_4:20444197-20444216 | None:intergenic | 25.0% |
| !!! | AAGAAAATCACTTTTGTTGA+AGG | + | chr2_4:20444199-20444218 | Msa0320150:CDS | 25.0% |
| !!! | TGATTTGGTATACTTGAAAA+AGG | + | chr2_4:20444519-20444538 | Msa0320150:intron | 25.0% |
| ! | AACTTACTTTAATACAACCT+TGG | - | chr2_4:20444571-20444590 | None:intergenic | 25.0% |
| ! | CTTTCAAATATACCGTTAAA+AGG | - | chr2_4:20444680-20444699 | None:intergenic | 25.0% |
| !! | AGAATGCTAGAATATTCTTT+TGG | + | chr2_4:20444698-20444717 | Msa0320150:intron | 25.0% |
| ! | GACTAAACTATACTTATTTC+CGG | - | chr2_4:20444756-20444775 | None:intergenic | 25.0% |
| ! | TTAGTCAAAGACAAATTGTT+CGG | - | chr2_4:20444798-20444817 | None:intergenic | 25.0% |
| ! | TATATGCTTTAGTTGTAATC+AGG | - | chr2_4:20445254-20445273 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_4:20445322-20445341 | Msa0320150:three_prime_UTR | 25.0% |
| !! | AACAAAAGTGATTTTCTTGA+TGG | - | chr2_4:20444197-20444216 | None:intergenic | 25.0% |
| !!! | AAGAAAATCACTTTTGTTGA+AGG | + | chr2_4:20444199-20444218 | Msa0320150:CDS | 25.0% |
| !!! | TGATTTGGTATACTTGAAAA+AGG | + | chr2_4:20444519-20444538 | Msa0320150:intron | 25.0% |
| ! | AACTTACTTTAATACAACCT+TGG | - | chr2_4:20444571-20444590 | None:intergenic | 25.0% |
| ! | CTTTCAAATATACCGTTAAA+AGG | - | chr2_4:20444680-20444699 | None:intergenic | 25.0% |
| !! | AGAATGCTAGAATATTCTTT+TGG | + | chr2_4:20444698-20444717 | Msa0320150:intron | 25.0% |
| ! | GACTAAACTATACTTATTTC+CGG | - | chr2_4:20444756-20444775 | None:intergenic | 25.0% |
| ! | TTAGTCAAAGACAAATTGTT+CGG | - | chr2_4:20444798-20444817 | None:intergenic | 25.0% |
| ! | TATATGCTTTAGTTGTAATC+AGG | - | chr2_4:20445254-20445273 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_4:20445322-20445341 | Msa0320150:three_prime_UTR | 25.0% |
| AACGATATCAATACTCTTGA+TGG | - | chr2_4:20444152-20444171 | None:intergenic | 30.0% | |
| !! | AAGAGTATTGATATCGTTGA+AGG | + | chr2_4:20444154-20444173 | Msa0320150:CDS | 30.0% |
| ! | GAAGAATAACCACATTGATT+TGG | + | chr2_4:20444504-20444523 | Msa0320150:intron | 30.0% |
| TCAAGTATACCAAATCAATG+TGG | - | chr2_4:20444516-20444535 | None:intergenic | 30.0% | |
| AAAAGGTTCTTAGCACAAAA+TGG | + | chr2_4:20444536-20444555 | Msa0320150:intron | 30.0% | |
| CAAAATGGACAATTTAACCA+AGG | + | chr2_4:20444551-20444570 | Msa0320150:intron | 30.0% | |
| TAAAGAATGAGATCACTAAG+CGG | - | chr2_4:20444644-20444663 | None:intergenic | 30.0% | |
| CTTAGTGATCTCATTCTTTA+TGG | + | chr2_4:20444644-20444663 | Msa0320150:intron | 30.0% | |
| GATCTCATTCTTTATGGAAT+AGG | + | chr2_4:20444650-20444669 | Msa0320150:intron | 30.0% | |
| TTCTAATCTGAGTATCATTC+CGG | + | chr2_4:20444734-20444753 | Msa0320150:intron | 30.0% | |
| AACACAATTGCTTGATTAAC+TGG | + | chr2_4:20444835-20444854 | Msa0320150:intron | 30.0% | |
| CTTAGTAGATGATGTTAACT+TGG | + | chr2_4:20445004-20445023 | Msa0320150:CDS | 30.0% | |
| !! | CTATTTCTTTCCTTTTGTTG+TGG | + | chr2_4:20445385-20445404 | Msa0320150:three_prime_UTR | 30.0% |
| AACGATATCAATACTCTTGA+TGG | - | chr2_4:20444152-20444171 | None:intergenic | 30.0% | |
| !! | AAGAGTATTGATATCGTTGA+AGG | + | chr2_4:20444154-20444173 | Msa0320150:CDS | 30.0% |
| ! | GAAGAATAACCACATTGATT+TGG | + | chr2_4:20444504-20444523 | Msa0320150:intron | 30.0% |
| TCAAGTATACCAAATCAATG+TGG | - | chr2_4:20444516-20444535 | None:intergenic | 30.0% | |
| AAAAGGTTCTTAGCACAAAA+TGG | + | chr2_4:20444536-20444555 | Msa0320150:intron | 30.0% | |
| CAAAATGGACAATTTAACCA+AGG | + | chr2_4:20444551-20444570 | Msa0320150:intron | 30.0% | |
| TAAAGAATGAGATCACTAAG+CGG | - | chr2_4:20444644-20444663 | None:intergenic | 30.0% | |
| CTTAGTGATCTCATTCTTTA+TGG | + | chr2_4:20444644-20444663 | Msa0320150:intron | 30.0% | |
| GATCTCATTCTTTATGGAAT+AGG | + | chr2_4:20444650-20444669 | Msa0320150:intron | 30.0% | |
| TTCTAATCTGAGTATCATTC+CGG | + | chr2_4:20444734-20444753 | Msa0320150:intron | 30.0% | |
| AACACAATTGCTTGATTAAC+TGG | + | chr2_4:20444835-20444854 | Msa0320150:intron | 30.0% | |
| CTTAGTAGATGATGTTAACT+TGG | + | chr2_4:20445004-20445023 | Msa0320150:CDS | 30.0% | |
| !! | CTATTTCTTTCCTTTTGTTG+TGG | + | chr2_4:20445385-20445404 | Msa0320150:three_prime_UTR | 30.0% |
| !! | ATATGCTAACTTGCTACTGA+AGG | - | chr2_4:20444009-20444028 | None:intergenic | 35.0% |
| ! | AATGGGTGTTTTCAACTTTG+AGG | + | chr2_4:20444039-20444058 | Msa0320150:exon | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_4:20444135-20444154 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_4:20444136-20444155 | None:intergenic | 35.0% |
| ATTGATATCGTTGAAGGAGA+CGG | + | chr2_4:20444160-20444179 | Msa0320150:CDS | 35.0% | |
| !! | AGTGATTTTCTTGATGGTTC+CGG | - | chr2_4:20444191-20444210 | None:intergenic | 35.0% |
| ATCTAACTGCGAAATTCACA+CGG | + | chr2_4:20444265-20444284 | Msa0320150:intron | 35.0% | |
| ! | GGAATAGGTCATCCTTTTAA+CGG | + | chr2_4:20444665-20444684 | Msa0320150:intron | 35.0% |
| TTTAACCAATGATGTGCAGA+TGG | + | chr2_4:20444951-20444970 | Msa0320150:intron | 35.0% | |
| AGTGGAGAAGATTTCATTTG+AGG | + | chr2_4:20445070-20445089 | Msa0320150:CDS | 35.0% | |
| TTTCACACTAAGCTTTGCAA+TGG | - | chr2_4:20445126-20445145 | None:intergenic | 35.0% | |
| !! | ATATGCTAACTTGCTACTGA+AGG | - | chr2_4:20444009-20444028 | None:intergenic | 35.0% |
| ! | AATGGGTGTTTTCAACTTTG+AGG | + | chr2_4:20444039-20444058 | Msa0320150:exon | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_4:20444135-20444154 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_4:20444136-20444155 | None:intergenic | 35.0% |
| ATTGATATCGTTGAAGGAGA+CGG | + | chr2_4:20444160-20444179 | Msa0320150:CDS | 35.0% | |
| !! | AGTGATTTTCTTGATGGTTC+CGG | - | chr2_4:20444191-20444210 | None:intergenic | 35.0% |
| ATCTAACTGCGAAATTCACA+CGG | + | chr2_4:20444265-20444284 | Msa0320150:intron | 35.0% | |
| ! | GGAATAGGTCATCCTTTTAA+CGG | + | chr2_4:20444665-20444684 | Msa0320150:intron | 35.0% |
| TTTAACCAATGATGTGCAGA+TGG | + | chr2_4:20444951-20444970 | Msa0320150:intron | 35.0% | |
| AGTGGAGAAGATTTCATTTG+AGG | + | chr2_4:20445070-20445089 | Msa0320150:CDS | 35.0% | |
| TTTCACACTAAGCTTTGCAA+TGG | - | chr2_4:20445126-20445145 | None:intergenic | 35.0% | |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_4:20444088-20444107 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_4:20444129-20444148 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_4:20444134-20444153 | None:intergenic | 40.0% | |
| TTTCACCATCTGCACATCAT+TGG | - | chr2_4:20444959-20444978 | None:intergenic | 40.0% | |
| CACTTTGTGCAACACATACT+TGG | - | chr2_4:20444982-20445001 | None:intergenic | 40.0% | |
| CAAGTATGTGTTGCACAAAG+TGG | + | chr2_4:20444980-20444999 | Msa0320150:CDS | 40.0% | |
| !!! | TACAGCATAGTTGGTGGTTT+TGG | + | chr2_4:20445035-20445054 | Msa0320150:CDS | 40.0% |
| !!! | ACAGCATAGTTGGTGGTTTT+GGG | + | chr2_4:20445036-20445055 | Msa0320150:CDS | 40.0% |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_4:20445086-20445105 | Msa0320150:CDS | 40.0% |
| AAATTGTCTGCAGGACCAAA+TGG | + | chr2_4:20445095-20445114 | Msa0320150:CDS | 40.0% | |
| TTTGCAATGGTTCCTCCATT+TGG | - | chr2_4:20445113-20445132 | None:intergenic | 40.0% | |
| ! | ACTAGGTGCAACATCACTTT+TGG | - | chr2_4:20445156-20445175 | None:intergenic | 40.0% |
| TTCTTGAGTTCCTCTTCACT+AGG | - | chr2_4:20445173-20445192 | None:intergenic | 40.0% | |
| AGTGAAGAGGAACTCAAGAA+TGG | + | chr2_4:20445173-20445192 | Msa0320150:CDS | 40.0% | |
| AACTCAAGAATGGCAAAGCT+AGG | + | chr2_4:20445183-20445202 | Msa0320150:CDS | 40.0% | |
| ACTCAAGAATGGCAAAGCTA+GGG | + | chr2_4:20445184-20445203 | Msa0320150:CDS | 40.0% | |
| TTGCTTGCTTGCTCTATACA+TGG | + | chr2_4:20445279-20445298 | Msa0320150:three_prime_UTR | 40.0% | |
| ACTCACACTTCCACAACAAA+AGG | - | chr2_4:20445398-20445417 | None:intergenic | 40.0% | |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_4:20444088-20444107 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_4:20444129-20444148 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_4:20444134-20444153 | None:intergenic | 40.0% | |
| TTTCACCATCTGCACATCAT+TGG | - | chr2_4:20444959-20444978 | None:intergenic | 40.0% | |
| CACTTTGTGCAACACATACT+TGG | - | chr2_4:20444982-20445001 | None:intergenic | 40.0% | |
| CAAGTATGTGTTGCACAAAG+TGG | + | chr2_4:20444980-20444999 | Msa0320150:CDS | 40.0% | |
| !!! | TACAGCATAGTTGGTGGTTT+TGG | + | chr2_4:20445035-20445054 | Msa0320150:CDS | 40.0% |
| !!! | ACAGCATAGTTGGTGGTTTT+GGG | + | chr2_4:20445036-20445055 | Msa0320150:CDS | 40.0% |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_4:20445086-20445105 | Msa0320150:CDS | 40.0% |
| AAATTGTCTGCAGGACCAAA+TGG | + | chr2_4:20445095-20445114 | Msa0320150:CDS | 40.0% | |
| TTTGCAATGGTTCCTCCATT+TGG | - | chr2_4:20445113-20445132 | None:intergenic | 40.0% | |
| ! | ACTAGGTGCAACATCACTTT+TGG | - | chr2_4:20445156-20445175 | None:intergenic | 40.0% |
| TTCTTGAGTTCCTCTTCACT+AGG | - | chr2_4:20445173-20445192 | None:intergenic | 40.0% | |
| AGTGAAGAGGAACTCAAGAA+TGG | + | chr2_4:20445173-20445192 | Msa0320150:CDS | 40.0% | |
| AACTCAAGAATGGCAAAGCT+AGG | + | chr2_4:20445183-20445202 | Msa0320150:CDS | 40.0% | |
| ACTCAAGAATGGCAAAGCTA+GGG | + | chr2_4:20445184-20445203 | Msa0320150:CDS | 40.0% | |
| TTGCTTGCTTGCTCTATACA+TGG | + | chr2_4:20445279-20445298 | Msa0320150:three_prime_UTR | 40.0% | |
| ACTCACACTTCCACAACAAA+AGG | - | chr2_4:20445398-20445417 | None:intergenic | 40.0% | |
| TGTAGCAGGAGCTACAATAG+AGG | - | chr2_4:20444074-20444093 | None:intergenic | 45.0% | |
| GCTTACCACTACAGCATAGT+TGG | + | chr2_4:20445026-20445045 | Msa0320150:CDS | 45.0% | |
| TACCACTACAGCATAGTTGG+TGG | + | chr2_4:20445029-20445048 | Msa0320150:CDS | 45.0% | |
| AACCACCAACTATGCTGTAG+TGG | - | chr2_4:20445034-20445053 | None:intergenic | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_4:20445065-20445084 | None:intergenic | 45.0% | |
| TGATGTTGCACCTAGTGAAG+AGG | + | chr2_4:20445160-20445179 | Msa0320150:CDS | 45.0% | |
| CTCAAGAATGGCAAAGCTAG+GGG | + | chr2_4:20445185-20445204 | Msa0320150:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_4:20445202-20445221 | Msa0320150:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_4:20445212-20445231 | Msa0320150:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_4:20445223-20445242 | Msa0320150:CDS | 45.0% |
| TGCTTGCTCTATACATGGTG+TGG | + | chr2_4:20445284-20445303 | Msa0320150:three_prime_UTR | 45.0% | |
| TGTAGCAGGAGCTACAATAG+AGG | - | chr2_4:20444074-20444093 | None:intergenic | 45.0% | |
| GCTTACCACTACAGCATAGT+TGG | + | chr2_4:20445026-20445045 | Msa0320150:CDS | 45.0% | |
| TACCACTACAGCATAGTTGG+TGG | + | chr2_4:20445029-20445048 | Msa0320150:CDS | 45.0% | |
| AACCACCAACTATGCTGTAG+TGG | - | chr2_4:20445034-20445053 | None:intergenic | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_4:20445065-20445084 | None:intergenic | 45.0% | |
| TGATGTTGCACCTAGTGAAG+AGG | + | chr2_4:20445160-20445179 | Msa0320150:CDS | 45.0% | |
| CTCAAGAATGGCAAAGCTAG+GGG | + | chr2_4:20445185-20445204 | Msa0320150:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_4:20445202-20445221 | Msa0320150:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_4:20445212-20445231 | Msa0320150:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_4:20445223-20445242 | Msa0320150:CDS | 45.0% |
| TGCTTGCTCTATACATGGTG+TGG | + | chr2_4:20445284-20445303 | Msa0320150:three_prime_UTR | 45.0% | |
| AGCAGGAGCTACAATAGAGG+TGG | - | chr2_4:20444071-20444090 | None:intergenic | 50.0% | |
| TGCTGACAACCTTACCCCAA+AGG | + | chr2_4:20444117-20444136 | Msa0320150:CDS | 50.0% | |
| GATATCGTTGAAGGAGACGG+TGG | + | chr2_4:20444163-20444182 | Msa0320150:CDS | 50.0% | |
| ! | TTTTGGGCTTCCAGACACAG+TGG | + | chr2_4:20445052-20445071 | Msa0320150:CDS | 50.0% |
| TTGTCTGCAGGACCAAATGG+AGG | + | chr2_4:20445098-20445117 | Msa0320150:CDS | 50.0% | |
| AATGGCAAAGCTAGGGGTGA+TGG | + | chr2_4:20445191-20445210 | Msa0320150:CDS | 50.0% | |
| AGCAGGAGCTACAATAGAGG+TGG | - | chr2_4:20444071-20444090 | None:intergenic | 50.0% | |
| TGCTGACAACCTTACCCCAA+AGG | + | chr2_4:20444117-20444136 | Msa0320150:CDS | 50.0% | |
| GATATCGTTGAAGGAGACGG+TGG | + | chr2_4:20444163-20444182 | Msa0320150:CDS | 50.0% | |
| ! | TTTTGGGCTTCCAGACACAG+TGG | + | chr2_4:20445052-20445071 | Msa0320150:CDS | 50.0% |
| TTGTCTGCAGGACCAAATGG+AGG | + | chr2_4:20445098-20445117 | Msa0320150:CDS | 50.0% | |
| AATGGCAAAGCTAGGGGTGA+TGG | + | chr2_4:20445191-20445210 | Msa0320150:CDS | 50.0% | |
| GTTGAAGGAGACGGTGGCGC+CGG | + | chr2_4:20444169-20444188 | Msa0320150:CDS | 65.0% | |
| GTTGAAGGAGACGGTGGCGC+CGG | + | chr2_4:20444169-20444188 | Msa0320150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 20443970 | 20445467 | 20443970 | ID=Msa0320150;Name=Msa0320150 |
| chr2_4 | mRNA | 20443970 | 20445467 | 20443970 | ID=Msa0320150-mRNA-1;Parent=Msa0320150;Name=Msa0320150-mRNA-1;_AED=0.40;_eAED=0.40;_QI=70|1|1|1|1|1|2|202|158 |
| chr2_4 | exon | 20443970 | 20444220 | 20443970 | ID=Msa0320150-mRNA-1:exon:7537;Parent=Msa0320150-mRNA-1 |
| chr2_4 | exon | 20444970 | 20445467 | 20444970 | ID=Msa0320150-mRNA-1:exon:7538;Parent=Msa0320150-mRNA-1 |
| chr2_4 | five_prime_UTR | 20443970 | 20444039 | 20443970 | ID=Msa0320150-mRNA-1:five_prime_utr;Parent=Msa0320150-mRNA-1 |
| chr2_4 | CDS | 20444040 | 20444220 | 20444040 | ID=Msa0320150-mRNA-1:cds;Parent=Msa0320150-mRNA-1 |
| chr2_4 | CDS | 20444970 | 20445265 | 20444970 | ID=Msa0320150-mRNA-1:cds;Parent=Msa0320150-mRNA-1 |
| chr2_4 | three_prime_UTR | 20445266 | 20445467 | 20445266 | ID=Msa0320150-mRNA-1:three_prime_utr;Parent=Msa0320150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
