Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280980 | XP_003594832.1 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 3.36e-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280980 | sp|P93333|PR101_MEDTR | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 1.35e-94 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0280980 | 0.817794 | 2.740973e-52 | -8.615850e-47 |
| Msa0014590 | Msa0280980 | 0.800582 | 1.347227e-48 | -8.615850e-47 |
| Msa0027860 | Msa0280980 | 0.807162 | 5.783458e-50 | -8.615850e-47 |
| Msa0059880 | Msa0280980 | 0.814314 | 1.640806e-51 | -8.615850e-47 |
| Msa0150910 | Msa0280980 | 0.825264 | 5.154880e-54 | -8.615850e-47 |
| Msa0160580 | Msa0280980 | 0.809672 | 1.685132e-50 | -8.615850e-47 |
| Msa0168010 | Msa0280980 | 0.801955 | 7.051928e-49 | -8.615850e-47 |
| Msa0190670 | Msa0280980 | 0.811066 | 8.429488e-51 | -8.615850e-47 |
| Msa0243990 | Msa0280980 | 0.809351 | 1.975267e-50 | -8.615850e-47 |
| Msa0274260 | Msa0280980 | 0.815684 | 8.150448e-52 | -8.615850e-47 |
| Msa0278460 | Msa0280980 | 0.817555 | 3.103260e-52 | -8.615850e-47 |
| Msa0278950 | Msa0280980 | 0.810841 | 9.433549e-51 | -8.615850e-47 |
| Msa0280980 | Msa0320150 | 0.965035 | 4.381741e-124 | -8.615850e-47 |
| Msa0280980 | Msa0328090 | 0.808951 | 2.405634e-50 | -8.615850e-47 |
| Msa0280980 | Msa0366510 | 0.816009 | 6.897056e-52 | -8.615850e-47 |
| Msa0280980 | Msa0374040 | 0.823509 | 1.332873e-53 | -8.615850e-47 |
| Msa0280980 | Msa0396700 | 0.812261 | 4.634124e-51 | -8.615850e-47 |
| Msa0280980 | Msa0396790 | 0.803722 | 3.043433e-49 | -8.615850e-47 |
| Msa0280980 | Msa0414480 | 0.818234 | 2.179882e-52 | -8.615850e-47 |
| Msa0280980 | Msa0444400 | 0.811058 | 8.463660e-51 | -8.615850e-47 |
| Msa0280980 | Msa0464310 | 0.800962 | 1.126753e-48 | -8.615850e-47 |
| Msa0280980 | Msa0469450 | 0.822331 | 2.507821e-53 | -8.615850e-47 |
| Msa0280980 | Msa0491800 | 0.810263 | 1.257448e-50 | -8.615850e-47 |
| Msa0280980 | Msa0491950 | 0.800314 | 1.527572e-48 | -8.615850e-47 |
| Msa0280980 | Msa0515130 | 0.819770 | 9.752994e-53 | -8.615850e-47 |
| Msa0280980 | Msa0515150 | 0.827081 | 1.904979e-54 | -8.615850e-47 |
| Msa0280980 | Msa0535570 | 0.842997 | 1.836730e-58 | -8.615850e-47 |
| Msa0280980 | Msa0538450 | 0.803078 | 4.139223e-49 | -8.615850e-47 |
| Msa0280980 | Msa0543740 | 0.826634 | 2.435803e-54 | -8.615850e-47 |
| Msa0280980 | Msa0554660 | 0.800133 | 1.662779e-48 | -8.615850e-47 |
| Msa0280980 | Msa0591490 | 0.842605 | 2.335515e-58 | -8.615850e-47 |
| Msa0280980 | Msa0631700 | 0.832852 | 7.463977e-56 | -8.615850e-47 |
| Msa0280980 | Msa0640290 | 0.818673 | 1.733344e-52 | -8.615850e-47 |
| Msa0280980 | Msa0643840 | 0.813397 | 2.612816e-51 | -8.615850e-47 |
| Msa0280980 | Msa0670360 | 0.843975 | 1.006274e-58 | -8.615850e-47 |
| Msa0280980 | Msa0671640 | 0.802893 | 4.519818e-49 | -8.615850e-47 |
| Msa0280980 | Msa0678620 | 0.812866 | 3.417043e-51 | -8.615850e-47 |
| Msa0280980 | Msa0708680 | 0.806736 | 7.117951e-50 | -8.615850e-47 |
| Msa0280980 | Msa0727480 | 0.823528 | 1.319489e-53 | -8.615850e-47 |
| Msa0280980 | Msa0735140 | 0.814318 | 1.637851e-51 | -8.615850e-47 |
| Msa0280980 | Msa0735280 | 0.817720 | 2.847885e-52 | -8.615850e-47 |
| Msa0280980 | Msa0751960 | 0.814806 | 1.277012e-51 | -8.615850e-47 |
| Msa0280980 | Msa0768670 | 0.818120 | 2.313337e-52 | -8.615850e-47 |
| Msa0280980 | Msa0768720 | 0.809071 | 2.268426e-50 | -8.615850e-47 |
| Msa0280980 | Msa0777070 | 0.804802 | 1.813642e-49 | -8.615850e-47 |
| Msa0280980 | Msa0787860 | 0.821742 | 3.434853e-53 | -8.615850e-47 |
| Msa0280980 | Msa0806930 | 0.807397 | 5.157387e-50 | -8.615850e-47 |
| Msa0280980 | Msa0814160 | 0.807498 | 4.909803e-50 | -8.615850e-47 |
| Msa0280980 | Msa0816140 | 0.829076 | 6.300319e-55 | -8.615850e-47 |
| Msa0280980 | Msa0824850 | 0.831779 | 1.375875e-55 | -8.615850e-47 |
| Msa0280980 | Msa0824860 | 0.808721 | 2.695340e-50 | -8.615850e-47 |
| Msa0280980 | Msa0831890 | 0.800968 | 1.123691e-48 | -8.615850e-47 |
| Msa0280980 | Msa0854840 | 0.819485 | 1.132951e-52 | -8.615850e-47 |
| Msa0280980 | Msa0863840 | 0.826910 | 2.092761e-54 | -8.615850e-47 |
| Msa0280980 | Msa0863850 | 0.834861 | 2.346157e-56 | -8.615850e-47 |
| Msa0280980 | Msa0863860 | 0.824501 | 7.800754e-54 | -8.615850e-47 |
| Msa0280980 | Msa0864160 | 0.836468 | 9.194960e-57 | -8.615850e-47 |
| Msa0280980 | Msa0883640 | 0.809815 | 1.569870e-50 | -8.615850e-47 |
| Msa0280980 | Msa0896920 | 0.821520 | 3.864609e-53 | -8.615850e-47 |
| Msa0280980 | Msa0910830 | 0.814036 | 1.890303e-51 | -8.615850e-47 |
| Msa0280980 | Msa0913550 | 0.851361 | 9.329127e-61 | -8.615850e-47 |
| Msa0280980 | Msa0941120 | 0.800572 | 1.353365e-48 | -8.615850e-47 |
| Msa0280980 | Msa0960090 | 0.811427 | 7.040895e-51 | -8.615850e-47 |
| Msa0280980 | Msa0967820 | 0.806361 | 8.540280e-50 | -8.615850e-47 |
| Msa0280980 | Msa0972370 | 0.807864 | 4.104809e-50 | -8.615850e-47 |
| Msa0280980 | Msa0985700 | 0.811650 | 6.296911e-51 | -8.615850e-47 |
| Msa0280980 | Msa0987640 | 0.804199 | 2.422909e-49 | -8.615850e-47 |
| Msa0280980 | Msa0993450 | 0.800310 | 1.530298e-48 | -8.615850e-47 |
| Msa0280980 | Msa1007930 | 0.811046 | 8.513481e-51 | -8.615850e-47 |
| Msa0280980 | Msa1018590 | 0.802447 | 5.585329e-49 | -8.615850e-47 |
| Msa0280980 | Msa1021620 | 0.811405 | 7.118478e-51 | -8.615850e-47 |
| Msa0280980 | Msa1022490 | 0.815461 | 9.138411e-52 | -8.615850e-47 |
| Msa0280980 | Msa1022510 | 0.823881 | 1.090881e-53 | -8.615850e-47 |
| Msa0280980 | Msa1061670 | 0.847786 | 9.274362e-60 | -8.615850e-47 |
| Msa0280980 | Msa1063210 | 0.810488 | 1.124073e-50 | -8.615850e-47 |
| Msa0280980 | Msa1064940 | 0.835319 | 1.798417e-56 | -8.615850e-47 |
| Msa0280980 | Msa1087380 | 0.816973 | 4.194941e-52 | -8.615850e-47 |
| Msa0280980 | Msa1106680 | 0.829121 | 6.144885e-55 | -8.615850e-47 |
| Msa0280980 | Msa1106960 | 0.842160 | 3.063998e-58 | -8.615850e-47 |
| Msa0280980 | Msa1109890 | 0.802394 | 5.729404e-49 | -8.615850e-47 |
| Msa0280980 | Msa1138110 | 0.811446 | 6.973493e-51 | -8.615850e-47 |
| Msa0280980 | Msa1147030 | 0.823694 | 1.206805e-53 | -8.615850e-47 |
| Msa0280980 | Msa1148210 | 0.803942 | 2.740383e-49 | -8.615850e-47 |
| Msa0280980 | Msa1153690 | 0.810275 | 1.250130e-50 | -8.615850e-47 |
| Msa0280980 | Msa1156240 | 0.810909 | 9.119267e-51 | -8.615850e-47 |
| Msa0280980 | Msa1170340 | 0.819015 | 1.449901e-52 | -8.615850e-47 |
| Msa0280980 | Msa1179170 | 0.801666 | 8.084180e-49 | -8.615850e-47 |
| Msa0280980 | Msa1191350 | 0.823029 | 1.725346e-53 | -8.615850e-47 |
| Msa0280980 | Msa1238250 | 0.827583 | 1.443818e-54 | -8.615850e-47 |
| Msa0280980 | Msa1296870 | 0.809700 | 1.662426e-50 | -8.615850e-47 |
| Msa0280980 | Msa1300610 | 0.826010 | 3.428993e-54 | -8.615850e-47 |
| Msa0280980 | Msa1319030 | 0.825604 | 4.280996e-54 | -8.615850e-47 |
| Msa0280980 | Msa1319190 | 0.808330 | 3.266069e-50 | -8.615850e-47 |
| Msa0280980 | Msa1329740 | 0.808822 | 2.563734e-50 | -8.615850e-47 |
| Msa0280980 | Msa1411550 | 0.842696 | 2.208712e-58 | -8.615850e-47 |
| Msa0280980 | Msa1453650 | 0.806031 | 1.002094e-49 | -8.615850e-47 |
| Msa0280980 | Msa1459610 | 0.845697 | 3.454266e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280980 | MtrunA17_Chr2g0295051 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 3.09e-107 | 302 |
| Msa0280980 | MtrunA17_Chr2g0295064 | 86.076 | 158 | 22 | 0 | 1 | 158 | 68 | 225 | 4.30e-97 | 279 |
| Msa0280980 | MtrunA17_Chr2g0295021 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 9.94e-96 | 273 |
| Msa0280980 | MtrunA17_Chr2g0295001 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 9.94e-96 | 273 |
| Msa0280980 | MtrunA17_Chr2g0295041 | 86.076 | 158 | 22 | 0 | 1 | 158 | 1 | 158 | 3.40e-95 | 272 |
| Msa0280980 | MtrunA17_Chr4g0067951 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 1.44e-78 | 230 |
| Msa0280980 | MtrunA17_Chr6g0462311 | 68.354 | 158 | 50 | 0 | 1 | 158 | 1 | 158 | 3.13e-77 | 226 |
| Msa0280980 | MtrunA17_Chr6g0462291 | 66.429 | 140 | 47 | 0 | 1 | 140 | 1 | 140 | 3.71e-64 | 194 |
| Msa0280980 | MtrunA17_Chr2g0295141 | 60.510 | 157 | 62 | 0 | 1 | 157 | 1 | 157 | 4.74e-64 | 193 |
| Msa0280980 | MtrunA17_Chr2g0295091 | 58.599 | 157 | 65 | 0 | 1 | 157 | 1 | 157 | 7.20e-62 | 187 |
| Msa0280980 | MtrunA17_Chr2g0295104 | 57.962 | 157 | 66 | 0 | 1 | 157 | 1 | 157 | 3.07e-60 | 183 |
| Msa0280980 | MtrunA17_Chr2g0295124 | 57.325 | 157 | 67 | 0 | 1 | 157 | 1 | 157 | 1.13e-58 | 179 |
| Msa0280980 | MtrunA17_Chr2g0295081 | 56.051 | 157 | 69 | 0 | 1 | 157 | 1 | 157 | 1.55e-57 | 176 |
| Msa0280980 | MtrunA17_Chr2g0295211 | 37.179 | 156 | 97 | 1 | 1 | 155 | 1 | 156 | 7.54e-36 | 122 |
| Msa0280980 | MtrunA17_Chr4g0067841 | 38.217 | 157 | 96 | 1 | 1 | 156 | 1 | 157 | 1.56e-35 | 121 |
| Msa0280980 | MtrunA17_Chr4g0067921 | 44.444 | 162 | 83 | 5 | 1 | 158 | 1 | 159 | 2.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGCATAGTTGGTGGTTT+TGG | 0.149266 | 2_3:+16157223 | Msa0280980:CDS |
| TGATGGCATCAATAACCTTT+GGG | 0.301288 | 2_3:-16156320 | None:intergenic |
| AACGATATCAATACTCTTGA+TGG | 0.325047 | 2_3:-16156337 | None:intergenic |
| TTTGCAATGGTTCCTCCATT+TGG | 0.327211 | 2_3:-16157298 | None:intergenic |
| TATATCATGTGTTCTTGATT+TGG | 0.333285 | 2_3:+16157510 | Msa0280980:three_prime_UTR |
| TAGCATATTATAATTCATAA+TGG | 0.337737 | 2_3:+16156209 | Msa0280980:exon |
| TATATGCTTTAGTTGTAATC+AGG | 0.338630 | 2_3:-16157439 | None:intergenic |
| GAAATCTTCTCCACTGTGTC+TGG | 0.343745 | 2_3:-16157250 | None:intergenic |
| TTGATGGCATCAATAACCTT+TGG | 0.345179 | 2_3:-16156321 | None:intergenic |
| ACTAGGTGCAACATCACTTT+TGG | 0.347787 | 2_3:-16157341 | None:intergenic |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2_3:+16157411 | Msa0280980:CDS |
| CACTTTGTGCAACACATACT+TGG | 0.384404 | 2_3:-16157167 | None:intergenic |
| CTTAGTAGATGATGTTAACT+TGG | 0.391360 | 2_3:+16157192 | Msa0280980:CDS |
| AGCATATTATAATTCATAAT+GGG | 0.392129 | 2_3:+16156210 | Msa0280980:exon |
| CATCAATAACCTTTGGGGTA+AGG | 0.433870 | 2_3:-16156314 | None:intergenic |
| AAGAGTATTGATATCGTTGA+AGG | 0.465901 | 2_3:+16156342 | Msa0280980:CDS |
| GCTTACCACTACAGCATAGT+TGG | 0.468258 | 2_3:+16157214 | Msa0280980:CDS |
| AGTGGAGAAGATTTCATTTG+AGG | 0.476098 | 2_3:+16157258 | Msa0280980:CDS |
| AAATTGTCTGCAGGACCAAA+TGG | 0.477800 | 2_3:+16157283 | Msa0280980:CDS |
| AGAGCTTTGTAAAGTGTAGC+AGG | 0.480318 | 2_3:-16156273 | None:intergenic |
| ACTCACACTTCCACAACAAA+AGG | 0.482152 | 2_3:-16157583 | None:intergenic |
| TTTGAGGCTAAATTGTCTGC+AGG | 0.494016 | 2_3:+16157274 | Msa0280980:CDS |
| AATGGCAAAGCTAGGGGTGA+TGG | 0.523022 | 2_3:+16157379 | Msa0280980:CDS |
| TTCTTGAGTTCCTCTTCACT+AGG | 0.524188 | 2_3:-16157358 | None:intergenic |
| TTGCTTGCTTGCTCTATACA+TGG | 0.528688 | 2_3:+16157467 | Msa0280980:three_prime_UTR |
| TGCTTGCTCTATACATGGTG+TGG | 0.535846 | 2_3:+16157472 | Msa0280980:three_prime_UTR |
| CAAGTATGTGTTGCACAAAG+TGG | 0.538293 | 2_3:+16157168 | Msa0280980:CDS |
| AACTCAAGAATGGCAAAGCT+AGG | 0.540466 | 2_3:+16157371 | Msa0280980:CDS |
| ACTCAAGAATGGCAAAGCTA+GGG | 0.556431 | 2_3:+16157372 | Msa0280980:CDS |
| GTTGAAGGAGACGGTGGCGC+CGG | 0.560015 | 2_3:+16156357 | Msa0280980:CDS |
| TGTAGCAGGAGCTACAATAG+AGG | 0.565152 | 2_3:-16156259 | None:intergenic |
| TATTATAATTTACTTAAGCA+AGG | 0.566711 | 2_3:-16157630 | None:intergenic |
| TACCACTACAGCATAGTTGG+TGG | 0.567411 | 2_3:+16157217 | Msa0280980:CDS |
| TTTCACACTAAGCTTTGCAA+TGG | 0.568267 | 2_3:-16157311 | None:intergenic |
| GATGGCATCAATAACCTTTG+GGG | 0.578696 | 2_3:-16156319 | None:intergenic |
| AGTGAAGAGGAACTCAAGAA+TGG | 0.584353 | 2_3:+16157361 | Msa0280980:CDS |
| ATATGCTAACTTGCTACTGA+AGG | 0.585837 | 2_3:-16156194 | None:intergenic |
| ATTGATATCGTTGAAGGAGA+CGG | 0.588878 | 2_3:+16156348 | Msa0280980:CDS |
| AACCACCAACTATGCTGTAG+TGG | 0.607193 | 2_3:-16157219 | None:intergenic |
| TGATGTTGCACCTAGTGAAG+AGG | 0.613714 | 2_3:+16157348 | Msa0280980:CDS |
| TGCTGACAACCTTACCCCAA+AGG | 0.621335 | 2_3:+16156305 | Msa0280980:CDS |
| CTCAAGAATGGCAAAGCTAG+GGG | 0.641253 | 2_3:+16157373 | Msa0280980:CDS |
| AGCAGGAGCTACAATAGAGG+TGG | 0.665165 | 2_3:-16156256 | None:intergenic |
| TTGTCTGCAGGACCAAATGG+AGG | 0.666387 | 2_3:+16157286 | Msa0280980:CDS |
| GATATCGTTGAAGGAGACGG+TGG | 0.715509 | 2_3:+16156351 | Msa0280980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATATAAAATAAT+AGG | + | chr2_3:16157109-16157128 | Msa0280980:intron | 0.0% |
| !!! | TTTTTTATATATAAAATAAT+AGG | + | chr2_3:16157109-16157128 | Msa0280980:intron | 0.0% |
| !! | TAGCATATTATAATTCATAA+TGG | + | chr2_3:16156209-16156228 | Msa0280980:exon | 15.0% |
| !! | AGCATATTATAATTCATAAT+GGG | + | chr2_3:16156210-16156229 | Msa0280980:exon | 15.0% |
| !! | TGATAAAAGAAATTGATAAA+CGG | - | chr2_3:16156638-16156657 | None:intergenic | 15.0% |
| !! | TATTATAATTTACTTAAGCA+AGG | - | chr2_3:16157633-16157652 | None:intergenic | 15.0% |
| !! | TAGCATATTATAATTCATAA+TGG | + | chr2_3:16156209-16156228 | Msa0280980:exon | 15.0% |
| !! | AGCATATTATAATTCATAAT+GGG | + | chr2_3:16156210-16156229 | Msa0280980:exon | 15.0% |
| !! | TGATAAAAGAAATTGATAAA+CGG | - | chr2_3:16156638-16156657 | None:intergenic | 15.0% |
| !! | TATTATAATTTACTTAAGCA+AGG | - | chr2_3:16157633-16157652 | None:intergenic | 15.0% |
| !! | ACTCTTATGATTAACATATT+TGG | + | chr2_3:16156547-16156566 | Msa0280980:intron | 20.0% |
| !!! | ATATTTGGTAGCTAATTAAT+TGG | + | chr2_3:16156562-16156581 | Msa0280980:intron | 20.0% |
| !! | ATCATTACTAGTATTACATA+AGG | + | chr2_3:16157069-16157088 | Msa0280980:intron | 20.0% |
| !! | AAAAAAAGAGAGAATTACAT+TGG | - | chr2_3:16157539-16157558 | None:intergenic | 20.0% |
| !! | ACTCTTATGATTAACATATT+TGG | + | chr2_3:16156547-16156566 | Msa0280980:intron | 20.0% |
| !!! | ATATTTGGTAGCTAATTAAT+TGG | + | chr2_3:16156562-16156581 | Msa0280980:intron | 20.0% |
| !! | ATCATTACTAGTATTACATA+AGG | + | chr2_3:16157069-16157088 | Msa0280980:intron | 20.0% |
| !! | AAAAAAAGAGAGAATTACAT+TGG | - | chr2_3:16157539-16157558 | None:intergenic | 20.0% |
| !! | AACAAAAGTGATTTTCTTGA+TGG | - | chr2_3:16156385-16156404 | None:intergenic | 25.0% |
| !!! | AAGAAAATCACTTTTGTTGA+AGG | + | chr2_3:16156387-16156406 | Msa0280980:CDS | 25.0% |
| !!! | TGATTTGGTATACTTGAAAA+AGG | + | chr2_3:16156707-16156726 | Msa0280980:intron | 25.0% |
| ! | AACTTACTTTAATACAACCT+TGG | - | chr2_3:16156759-16156778 | None:intergenic | 25.0% |
| ! | CTTTCAAATATACCGTTAAA+AGG | - | chr2_3:16156868-16156887 | None:intergenic | 25.0% |
| !! | AGAATGCTAGAATATTCTTT+TGG | + | chr2_3:16156886-16156905 | Msa0280980:intron | 25.0% |
| ! | GACTAAACTATACTTATTTC+CGG | - | chr2_3:16156944-16156963 | None:intergenic | 25.0% |
| ! | TTAGTCAAAGACAAATTGTT+CGG | - | chr2_3:16156986-16157005 | None:intergenic | 25.0% |
| ! | TATATGCTTTAGTTGTAATC+AGG | - | chr2_3:16157442-16157461 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_3:16157510-16157529 | Msa0280980:three_prime_UTR | 25.0% |
| !! | AACAAAAGTGATTTTCTTGA+TGG | - | chr2_3:16156385-16156404 | None:intergenic | 25.0% |
| !!! | AAGAAAATCACTTTTGTTGA+AGG | + | chr2_3:16156387-16156406 | Msa0280980:CDS | 25.0% |
| !!! | TGATTTGGTATACTTGAAAA+AGG | + | chr2_3:16156707-16156726 | Msa0280980:intron | 25.0% |
| ! | AACTTACTTTAATACAACCT+TGG | - | chr2_3:16156759-16156778 | None:intergenic | 25.0% |
| ! | CTTTCAAATATACCGTTAAA+AGG | - | chr2_3:16156868-16156887 | None:intergenic | 25.0% |
| !! | AGAATGCTAGAATATTCTTT+TGG | + | chr2_3:16156886-16156905 | Msa0280980:intron | 25.0% |
| ! | GACTAAACTATACTTATTTC+CGG | - | chr2_3:16156944-16156963 | None:intergenic | 25.0% |
| ! | TTAGTCAAAGACAAATTGTT+CGG | - | chr2_3:16156986-16157005 | None:intergenic | 25.0% |
| ! | TATATGCTTTAGTTGTAATC+AGG | - | chr2_3:16157442-16157461 | None:intergenic | 25.0% |
| ! | TATATCATGTGTTCTTGATT+TGG | + | chr2_3:16157510-16157529 | Msa0280980:three_prime_UTR | 25.0% |
| AACGATATCAATACTCTTGA+TGG | - | chr2_3:16156340-16156359 | None:intergenic | 30.0% | |
| !! | AAGAGTATTGATATCGTTGA+AGG | + | chr2_3:16156342-16156361 | Msa0280980:CDS | 30.0% |
| ! | GAAGAATAACCACATTGATT+TGG | + | chr2_3:16156692-16156711 | Msa0280980:intron | 30.0% |
| TCAAGTATACCAAATCAATG+TGG | - | chr2_3:16156704-16156723 | None:intergenic | 30.0% | |
| AAAAGGTTCTTAGCACAAAA+TGG | + | chr2_3:16156724-16156743 | Msa0280980:intron | 30.0% | |
| CAAAATGGACAATTTAACCA+AGG | + | chr2_3:16156739-16156758 | Msa0280980:intron | 30.0% | |
| TAAAGAATGAGATCACTAAG+CGG | - | chr2_3:16156832-16156851 | None:intergenic | 30.0% | |
| CTTAGTGATCTCATTCTTTA+TGG | + | chr2_3:16156832-16156851 | Msa0280980:intron | 30.0% | |
| GATCTCATTCTTTATGGAAT+AGG | + | chr2_3:16156838-16156857 | Msa0280980:intron | 30.0% | |
| TTCTAATCTGAGTATCATTC+CGG | + | chr2_3:16156922-16156941 | Msa0280980:intron | 30.0% | |
| TAGTCAAAGACAAATTGTTC+GGG | - | chr2_3:16156985-16157004 | None:intergenic | 30.0% | |
| AACACAATTGCTTGATTAAC+TGG | + | chr2_3:16157023-16157042 | Msa0280980:intron | 30.0% | |
| CTTAGTAGATGATGTTAACT+TGG | + | chr2_3:16157192-16157211 | Msa0280980:CDS | 30.0% | |
| !! | CTATTTCTTTCCTTTTGTTG+TGG | + | chr2_3:16157573-16157592 | Msa0280980:three_prime_UTR | 30.0% |
| AACGATATCAATACTCTTGA+TGG | - | chr2_3:16156340-16156359 | None:intergenic | 30.0% | |
| !! | AAGAGTATTGATATCGTTGA+AGG | + | chr2_3:16156342-16156361 | Msa0280980:CDS | 30.0% |
| ! | GAAGAATAACCACATTGATT+TGG | + | chr2_3:16156692-16156711 | Msa0280980:intron | 30.0% |
| TCAAGTATACCAAATCAATG+TGG | - | chr2_3:16156704-16156723 | None:intergenic | 30.0% | |
| AAAAGGTTCTTAGCACAAAA+TGG | + | chr2_3:16156724-16156743 | Msa0280980:intron | 30.0% | |
| CAAAATGGACAATTTAACCA+AGG | + | chr2_3:16156739-16156758 | Msa0280980:intron | 30.0% | |
| TAAAGAATGAGATCACTAAG+CGG | - | chr2_3:16156832-16156851 | None:intergenic | 30.0% | |
| CTTAGTGATCTCATTCTTTA+TGG | + | chr2_3:16156832-16156851 | Msa0280980:intron | 30.0% | |
| GATCTCATTCTTTATGGAAT+AGG | + | chr2_3:16156838-16156857 | Msa0280980:intron | 30.0% | |
| TTCTAATCTGAGTATCATTC+CGG | + | chr2_3:16156922-16156941 | Msa0280980:intron | 30.0% | |
| TAGTCAAAGACAAATTGTTC+GGG | - | chr2_3:16156985-16157004 | None:intergenic | 30.0% | |
| AACACAATTGCTTGATTAAC+TGG | + | chr2_3:16157023-16157042 | Msa0280980:intron | 30.0% | |
| CTTAGTAGATGATGTTAACT+TGG | + | chr2_3:16157192-16157211 | Msa0280980:CDS | 30.0% | |
| !! | CTATTTCTTTCCTTTTGTTG+TGG | + | chr2_3:16157573-16157592 | Msa0280980:three_prime_UTR | 30.0% |
| !! | ATATGCTAACTTGCTACTGA+AGG | - | chr2_3:16156197-16156216 | None:intergenic | 35.0% |
| ! | AATGGGTGTTTTCAACTTTG+AGG | + | chr2_3:16156227-16156246 | Msa0280980:exon | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_3:16156323-16156342 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_3:16156324-16156343 | None:intergenic | 35.0% |
| ATTGATATCGTTGAAGGAGA+CGG | + | chr2_3:16156348-16156367 | Msa0280980:CDS | 35.0% | |
| !! | AGTGATTTTCTTGATGGTTC+CGG | - | chr2_3:16156379-16156398 | None:intergenic | 35.0% |
| ATCTAACTGCGAAATTCACA+CGG | + | chr2_3:16156453-16156472 | Msa0280980:intron | 35.0% | |
| ! | GGAATAGGTCATCCTTTTAA+CGG | + | chr2_3:16156853-16156872 | Msa0280980:intron | 35.0% |
| TTTAACCAATGATGTGCAGA+TGG | + | chr2_3:16157139-16157158 | Msa0280980:intron | 35.0% | |
| AGTGGAGAAGATTTCATTTG+AGG | + | chr2_3:16157258-16157277 | Msa0280980:CDS | 35.0% | |
| TTTCACACTAAGCTTTGCAA+TGG | - | chr2_3:16157314-16157333 | None:intergenic | 35.0% | |
| !! | ATATGCTAACTTGCTACTGA+AGG | - | chr2_3:16156197-16156216 | None:intergenic | 35.0% |
| ! | AATGGGTGTTTTCAACTTTG+AGG | + | chr2_3:16156227-16156246 | Msa0280980:exon | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_3:16156323-16156342 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_3:16156324-16156343 | None:intergenic | 35.0% |
| ATTGATATCGTTGAAGGAGA+CGG | + | chr2_3:16156348-16156367 | Msa0280980:CDS | 35.0% | |
| !! | AGTGATTTTCTTGATGGTTC+CGG | - | chr2_3:16156379-16156398 | None:intergenic | 35.0% |
| ATCTAACTGCGAAATTCACA+CGG | + | chr2_3:16156453-16156472 | Msa0280980:intron | 35.0% | |
| ! | GGAATAGGTCATCCTTTTAA+CGG | + | chr2_3:16156853-16156872 | Msa0280980:intron | 35.0% |
| TTTAACCAATGATGTGCAGA+TGG | + | chr2_3:16157139-16157158 | Msa0280980:intron | 35.0% | |
| AGTGGAGAAGATTTCATTTG+AGG | + | chr2_3:16157258-16157277 | Msa0280980:CDS | 35.0% | |
| TTTCACACTAAGCTTTGCAA+TGG | - | chr2_3:16157314-16157333 | None:intergenic | 35.0% | |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_3:16156276-16156295 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_3:16156317-16156336 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_3:16156322-16156341 | None:intergenic | 40.0% | |
| TTTCACCATCTGCACATCAT+TGG | - | chr2_3:16157147-16157166 | None:intergenic | 40.0% | |
| CACTTTGTGCAACACATACT+TGG | - | chr2_3:16157170-16157189 | None:intergenic | 40.0% | |
| CAAGTATGTGTTGCACAAAG+TGG | + | chr2_3:16157168-16157187 | Msa0280980:CDS | 40.0% | |
| !!! | TACAGCATAGTTGGTGGTTT+TGG | + | chr2_3:16157223-16157242 | Msa0280980:CDS | 40.0% |
| !!! | ACAGCATAGTTGGTGGTTTT+GGG | + | chr2_3:16157224-16157243 | Msa0280980:CDS | 40.0% |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_3:16157274-16157293 | Msa0280980:CDS | 40.0% |
| AAATTGTCTGCAGGACCAAA+TGG | + | chr2_3:16157283-16157302 | Msa0280980:CDS | 40.0% | |
| TTTGCAATGGTTCCTCCATT+TGG | - | chr2_3:16157301-16157320 | None:intergenic | 40.0% | |
| ! | ACTAGGTGCAACATCACTTT+TGG | - | chr2_3:16157344-16157363 | None:intergenic | 40.0% |
| TTCTTGAGTTCCTCTTCACT+AGG | - | chr2_3:16157361-16157380 | None:intergenic | 40.0% | |
| AGTGAAGAGGAACTCAAGAA+TGG | + | chr2_3:16157361-16157380 | Msa0280980:CDS | 40.0% | |
| AACTCAAGAATGGCAAAGCT+AGG | + | chr2_3:16157371-16157390 | Msa0280980:CDS | 40.0% | |
| ACTCAAGAATGGCAAAGCTA+GGG | + | chr2_3:16157372-16157391 | Msa0280980:CDS | 40.0% | |
| TTGCTTGCTTGCTCTATACA+TGG | + | chr2_3:16157467-16157486 | Msa0280980:three_prime_UTR | 40.0% | |
| ACTCACACTTCCACAACAAA+AGG | - | chr2_3:16157586-16157605 | None:intergenic | 40.0% | |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_3:16156276-16156295 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_3:16156317-16156336 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_3:16156322-16156341 | None:intergenic | 40.0% | |
| TTTCACCATCTGCACATCAT+TGG | - | chr2_3:16157147-16157166 | None:intergenic | 40.0% | |
| CACTTTGTGCAACACATACT+TGG | - | chr2_3:16157170-16157189 | None:intergenic | 40.0% | |
| CAAGTATGTGTTGCACAAAG+TGG | + | chr2_3:16157168-16157187 | Msa0280980:CDS | 40.0% | |
| !!! | TACAGCATAGTTGGTGGTTT+TGG | + | chr2_3:16157223-16157242 | Msa0280980:CDS | 40.0% |
| !!! | ACAGCATAGTTGGTGGTTTT+GGG | + | chr2_3:16157224-16157243 | Msa0280980:CDS | 40.0% |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_3:16157274-16157293 | Msa0280980:CDS | 40.0% |
| AAATTGTCTGCAGGACCAAA+TGG | + | chr2_3:16157283-16157302 | Msa0280980:CDS | 40.0% | |
| TTTGCAATGGTTCCTCCATT+TGG | - | chr2_3:16157301-16157320 | None:intergenic | 40.0% | |
| ! | ACTAGGTGCAACATCACTTT+TGG | - | chr2_3:16157344-16157363 | None:intergenic | 40.0% |
| TTCTTGAGTTCCTCTTCACT+AGG | - | chr2_3:16157361-16157380 | None:intergenic | 40.0% | |
| AGTGAAGAGGAACTCAAGAA+TGG | + | chr2_3:16157361-16157380 | Msa0280980:CDS | 40.0% | |
| AACTCAAGAATGGCAAAGCT+AGG | + | chr2_3:16157371-16157390 | Msa0280980:CDS | 40.0% | |
| ACTCAAGAATGGCAAAGCTA+GGG | + | chr2_3:16157372-16157391 | Msa0280980:CDS | 40.0% | |
| TTGCTTGCTTGCTCTATACA+TGG | + | chr2_3:16157467-16157486 | Msa0280980:three_prime_UTR | 40.0% | |
| ACTCACACTTCCACAACAAA+AGG | - | chr2_3:16157586-16157605 | None:intergenic | 40.0% | |
| TGTAGCAGGAGCTACAATAG+AGG | - | chr2_3:16156262-16156281 | None:intergenic | 45.0% | |
| GCTTACCACTACAGCATAGT+TGG | + | chr2_3:16157214-16157233 | Msa0280980:CDS | 45.0% | |
| TACCACTACAGCATAGTTGG+TGG | + | chr2_3:16157217-16157236 | Msa0280980:CDS | 45.0% | |
| AACCACCAACTATGCTGTAG+TGG | - | chr2_3:16157222-16157241 | None:intergenic | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_3:16157253-16157272 | None:intergenic | 45.0% | |
| TGATGTTGCACCTAGTGAAG+AGG | + | chr2_3:16157348-16157367 | Msa0280980:CDS | 45.0% | |
| CTCAAGAATGGCAAAGCTAG+GGG | + | chr2_3:16157373-16157392 | Msa0280980:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_3:16157390-16157409 | Msa0280980:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16157400-16157419 | Msa0280980:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16157411-16157430 | Msa0280980:CDS | 45.0% |
| TGCTTGCTCTATACATGGTG+TGG | + | chr2_3:16157472-16157491 | Msa0280980:three_prime_UTR | 45.0% | |
| TGTAGCAGGAGCTACAATAG+AGG | - | chr2_3:16156262-16156281 | None:intergenic | 45.0% | |
| GCTTACCACTACAGCATAGT+TGG | + | chr2_3:16157214-16157233 | Msa0280980:CDS | 45.0% | |
| TACCACTACAGCATAGTTGG+TGG | + | chr2_3:16157217-16157236 | Msa0280980:CDS | 45.0% | |
| AACCACCAACTATGCTGTAG+TGG | - | chr2_3:16157222-16157241 | None:intergenic | 45.0% | |
| GAAATCTTCTCCACTGTGTC+TGG | - | chr2_3:16157253-16157272 | None:intergenic | 45.0% | |
| TGATGTTGCACCTAGTGAAG+AGG | + | chr2_3:16157348-16157367 | Msa0280980:CDS | 45.0% | |
| CTCAAGAATGGCAAAGCTAG+GGG | + | chr2_3:16157373-16157392 | Msa0280980:CDS | 45.0% | |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | chr2_3:16157390-16157409 | Msa0280980:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | chr2_3:16157400-16157419 | Msa0280980:CDS | 45.0% |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | chr2_3:16157411-16157430 | Msa0280980:CDS | 45.0% |
| TGCTTGCTCTATACATGGTG+TGG | + | chr2_3:16157472-16157491 | Msa0280980:three_prime_UTR | 45.0% | |
| AGCAGGAGCTACAATAGAGG+TGG | - | chr2_3:16156259-16156278 | None:intergenic | 50.0% | |
| TGCTGACAACCTTACCCCAA+AGG | + | chr2_3:16156305-16156324 | Msa0280980:CDS | 50.0% | |
| GATATCGTTGAAGGAGACGG+TGG | + | chr2_3:16156351-16156370 | Msa0280980:CDS | 50.0% | |
| ! | TTTTGGGCTTCCAGACACAG+TGG | + | chr2_3:16157240-16157259 | Msa0280980:CDS | 50.0% |
| TTGTCTGCAGGACCAAATGG+AGG | + | chr2_3:16157286-16157305 | Msa0280980:CDS | 50.0% | |
| AATGGCAAAGCTAGGGGTGA+TGG | + | chr2_3:16157379-16157398 | Msa0280980:CDS | 50.0% | |
| AGCAGGAGCTACAATAGAGG+TGG | - | chr2_3:16156259-16156278 | None:intergenic | 50.0% | |
| TGCTGACAACCTTACCCCAA+AGG | + | chr2_3:16156305-16156324 | Msa0280980:CDS | 50.0% | |
| GATATCGTTGAAGGAGACGG+TGG | + | chr2_3:16156351-16156370 | Msa0280980:CDS | 50.0% | |
| ! | TTTTGGGCTTCCAGACACAG+TGG | + | chr2_3:16157240-16157259 | Msa0280980:CDS | 50.0% |
| TTGTCTGCAGGACCAAATGG+AGG | + | chr2_3:16157286-16157305 | Msa0280980:CDS | 50.0% | |
| AATGGCAAAGCTAGGGGTGA+TGG | + | chr2_3:16157379-16157398 | Msa0280980:CDS | 50.0% | |
| GTTGAAGGAGACGGTGGCGC+CGG | + | chr2_3:16156357-16156376 | Msa0280980:CDS | 65.0% | |
| GTTGAAGGAGACGGTGGCGC+CGG | + | chr2_3:16156357-16156376 | Msa0280980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16156158 | 16157655 | 16156158 | ID=Msa0280980;Name=Msa0280980 |
| chr2_3 | mRNA | 16156158 | 16157655 | 16156158 | ID=Msa0280980-mRNA-1;Parent=Msa0280980;Name=Msa0280980-mRNA-1;_AED=0.39;_eAED=0.39;_QI=70|1|1|1|1|1|2|202|158 |
| chr2_3 | exon | 16156158 | 16156408 | 16156158 | ID=Msa0280980-mRNA-1:exon:6655;Parent=Msa0280980-mRNA-1 |
| chr2_3 | exon | 16157158 | 16157655 | 16157158 | ID=Msa0280980-mRNA-1:exon:6656;Parent=Msa0280980-mRNA-1 |
| chr2_3 | five_prime_UTR | 16156158 | 16156227 | 16156158 | ID=Msa0280980-mRNA-1:five_prime_utr;Parent=Msa0280980-mRNA-1 |
| chr2_3 | CDS | 16156228 | 16156408 | 16156228 | ID=Msa0280980-mRNA-1:cds;Parent=Msa0280980-mRNA-1 |
| chr2_3 | CDS | 16157158 | 16157453 | 16157158 | ID=Msa0280980-mRNA-1:cds;Parent=Msa0280980-mRNA-1 |
| chr2_3 | three_prime_UTR | 16157454 | 16157655 | 16157454 | ID=Msa0280980-mRNA-1:three_prime_utr;Parent=Msa0280980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
