Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845930 | XP_003613835.1 | 96.887 | 514 | 16 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1019 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845930 | sp|P23586|STP1_ARATH | 69.006 | 513 | 157 | 2 | 2 | 514 | 3 | 513 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845930 | G7KGM7 | 96.887 | 514 | 16 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1019 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062860 | Msa0845930 | 0.814986 | 1.165079e-51 | -8.615850e-47 |
| Msa0102070 | Msa0845930 | 0.809752 | 1.619984e-50 | -8.615850e-47 |
| Msa0639610 | Msa0845930 | 0.823503 | 1.337642e-53 | -8.615850e-47 |
| Msa0650630 | Msa0845930 | 0.831668 | 1.465321e-55 | -8.615850e-47 |
| Msa0725850 | Msa0845930 | 0.971495 | 2.972484e-133 | -8.615850e-47 |
| Msa0726140 | Msa0845930 | 0.818381 | 2.019087e-52 | -8.615850e-47 |
| Msa0743810 | Msa0845930 | 0.826645 | 2.420993e-54 | -8.615850e-47 |
| Msa0745060 | Msa0845930 | 0.842023 | 3.329970e-58 | -8.615850e-47 |
| Msa0768290 | Msa0845930 | 0.806531 | 7.863329e-50 | -8.615850e-47 |
| Msa0783160 | Msa0845930 | 0.813550 | 2.417935e-51 | -8.615850e-47 |
| Msa0784290 | Msa0845930 | 0.833654 | 4.709842e-56 | -8.615850e-47 |
| Msa0787600 | Msa0845930 | 0.803225 | 3.858278e-49 | -8.615850e-47 |
| Msa0811270 | Msa0845930 | 0.804230 | 2.386352e-49 | -8.615850e-47 |
| Msa0824600 | Msa0845930 | 0.802133 | 6.481634e-49 | -8.615850e-47 |
| Msa0825860 | Msa0845930 | 0.838742 | 2.399752e-57 | -8.615850e-47 |
| Msa0142220 | Msa0845930 | 0.800295 | 1.541366e-48 | -8.615850e-47 |
| Msa0197010 | Msa0845930 | 0.802246 | 6.143835e-49 | -8.615850e-47 |
| Msa0227480 | Msa0845930 | 0.811159 | 8.048015e-51 | -8.615850e-47 |
| Msa0231000 | Msa0845930 | 0.803111 | 4.074039e-49 | -8.615850e-47 |
| Msa0232850 | Msa0845930 | 0.813558 | 2.408852e-51 | -8.615850e-47 |
| Msa0384800 | Msa0845930 | 0.814152 | 1.782245e-51 | -8.615850e-47 |
| Msa0384890 | Msa0845930 | 0.806140 | 9.506681e-50 | -8.615850e-47 |
| Msa0407750 | Msa0845930 | 0.802905 | 4.492964e-49 | -8.615850e-47 |
| Msa0414410 | Msa0845930 | 0.805644 | 1.208320e-49 | -8.615850e-47 |
| Msa0414420 | Msa0845930 | 0.813675 | 2.270275e-51 | -8.615850e-47 |
| Msa0436780 | Msa0845930 | 0.809831 | 1.557715e-50 | -8.615850e-47 |
| Msa0438620 | Msa0845930 | 0.805953 | 1.040795e-49 | -8.615850e-47 |
| Msa0450000 | Msa0845930 | 0.839775 | 1.294951e-57 | -8.615850e-47 |
| Msa0452900 | Msa0845930 | 0.839682 | 1.369487e-57 | -8.615850e-47 |
| Msa0453120 | Msa0845930 | 0.807665 | 4.524791e-50 | -8.615850e-47 |
| Msa0251320 | Msa0845930 | 0.802427 | 5.638718e-49 | -8.615850e-47 |
| Msa0267000 | Msa0845930 | 0.831741 | 1.405234e-55 | -8.615850e-47 |
| Msa0267010 | Msa0845930 | 0.836715 | 7.952206e-57 | -8.615850e-47 |
| Msa0270520 | Msa0845930 | 0.813846 | 2.081470e-51 | -8.615850e-47 |
| Msa0304170 | Msa0845930 | 0.805905 | 1.065272e-49 | -8.615850e-47 |
| Msa0329190 | Msa0845930 | 0.801116 | 1.047994e-48 | -8.615850e-47 |
| Msa0337900 | Msa0845930 | 0.800958 | 1.128673e-48 | -8.615850e-47 |
| Msa0342240 | Msa0845930 | 0.814212 | 1.728038e-51 | -8.615850e-47 |
| Msa0344980 | Msa0845930 | 0.802091 | 6.613801e-49 | -8.615850e-47 |
| Msa0355220 | Msa0845930 | 0.800049 | 1.729544e-48 | -8.615850e-47 |
| Msa0360510 | Msa0845930 | 0.816190 | 6.281944e-52 | -8.615850e-47 |
| Msa0485030 | Msa0845930 | 0.806866 | 6.680966e-50 | -8.615850e-47 |
| Msa0506270 | Msa0845930 | 0.810968 | 8.853419e-51 | -8.615850e-47 |
| Msa0564890 | Msa0845930 | 0.809515 | 1.821311e-50 | -8.615850e-47 |
| Msa0844500 | Msa0845930 | 0.802855 | 4.601942e-49 | -8.615850e-47 |
| Msa0845930 | Msa0846330 | 0.839630 | 1.412912e-57 | -8.615850e-47 |
| Msa0845930 | Msa0846350 | 0.813535 | 2.437000e-51 | -8.615850e-47 |
| Msa0845930 | Msa0858980 | 0.824366 | 8.391710e-54 | -8.615850e-47 |
| Msa0845930 | Msa0864070 | 0.808489 | 3.019894e-50 | -8.615850e-47 |
| Msa0845930 | Msa0865320 | 0.821373 | 4.179249e-53 | -8.615850e-47 |
| Msa0845930 | Msa0888420 | 0.846319 | 2.340575e-59 | -8.615850e-47 |
| Msa0845930 | Msa0899450 | 0.806778 | 6.973494e-50 | -8.615850e-47 |
| Msa0845930 | Msa0914760 | 0.812388 | 4.346925e-51 | -8.615850e-47 |
| Msa0845930 | Msa0952720 | 0.806812 | 6.858235e-50 | -8.615850e-47 |
| Msa0845930 | Msa0953120 | 0.801106 | 1.052830e-48 | -8.615850e-47 |
| Msa0845930 | Msa0989060 | 0.813359 | 2.663537e-51 | -8.615850e-47 |
| Msa0845930 | Msa1016280 | 0.832365 | 9.856615e-56 | -8.615850e-47 |
| Msa0845930 | Msa1024240 | 0.819696 | 1.013938e-52 | -8.615850e-47 |
| Msa0845930 | Msa1025360 | 0.843233 | 1.588913e-58 | -8.615850e-47 |
| Msa0845930 | Msa1025370 | 0.840369 | 9.064566e-58 | -8.615850e-47 |
| Msa0845930 | Msa1044830 | 0.840025 | 1.114377e-57 | -8.615850e-47 |
| Msa0845930 | Msa1044840 | 0.841739 | 3.958098e-58 | -8.615850e-47 |
| Msa0845930 | Msa1060840 | 0.810621 | 1.052185e-50 | -8.615850e-47 |
| Msa0845930 | Msa1092990 | 0.828543 | 8.479132e-55 | -8.615850e-47 |
| Msa0845930 | Msa1100980 | 0.834725 | 2.537963e-56 | -8.615850e-47 |
| Msa0845930 | Msa1112300 | 0.813439 | 2.557983e-51 | -8.615850e-47 |
| Msa0845930 | Msa1121200 | 0.802443 | 5.595587e-49 | -8.615850e-47 |
| Msa0845930 | Msa1135740 | 0.814478 | 1.509658e-51 | -8.615850e-47 |
| Msa0845930 | Msa1146100 | 0.802727 | 4.891412e-49 | -8.615850e-47 |
| Msa0845930 | Msa1146110 | 0.821579 | 3.745094e-53 | -8.615850e-47 |
| Msa0845930 | Msa1173920 | 0.832617 | 8.533142e-56 | -8.615850e-47 |
| Msa0845930 | Msa1187940 | 0.802893 | 4.519627e-49 | -8.615850e-47 |
| Msa0845930 | Msa1187950 | 0.801399 | 9.169000e-49 | -8.615850e-47 |
| Msa0845930 | Msa1192640 | 0.805727 | 1.161103e-49 | -8.615850e-47 |
| Msa0845930 | Msa1269670 | 0.831327 | 1.777561e-55 | -8.615850e-47 |
| Msa0845930 | Msa1270230 | 0.838081 | 3.553011e-57 | -8.615850e-47 |
| Msa0845930 | Msa1270240 | 0.833808 | 4.310636e-56 | -8.615850e-47 |
| Msa0845930 | Msa1270270 | 0.818800 | 1.622302e-52 | -8.615850e-47 |
| Msa0845930 | Msa1283330 | 0.828863 | 7.097092e-55 | -8.615850e-47 |
| Msa0845930 | Msa1285930 | 0.815167 | 1.061894e-51 | -8.615850e-47 |
| Msa0845930 | Msa1287800 | 0.819035 | 1.434457e-52 | -8.615850e-47 |
| Msa0845930 | Msa1287810 | 0.832567 | 8.782541e-56 | -8.615850e-47 |
| Msa0845930 | Msa1289430 | 0.819815 | 9.526775e-53 | -8.615850e-47 |
| Msa0845930 | Msa1297210 | 0.802294 | 6.005716e-49 | -8.615850e-47 |
| Msa0845930 | Msa1307890 | 0.851702 | 7.471772e-61 | -8.615850e-47 |
| Msa0845930 | Msa1321560 | 0.803059 | 4.176007e-49 | -8.615850e-47 |
| Msa0845930 | Msa1402790 | 0.800503 | 1.398109e-48 | -8.615850e-47 |
| Msa0845930 | Msa1404000 | 0.834270 | 3.303639e-56 | -8.615850e-47 |
| Msa0845930 | Msa1415310 | 0.856774 | 2.563114e-62 | -8.615850e-47 |
| Msa0845930 | Msa1433120 | 0.806357 | 8.557691e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845930 | MtrunA17_Chr5g0417611 | 96.887 | 514 | 16 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1019 |
| Msa0845930 | MtrunA17_Chr3g0128081 | 81.102 | 508 | 95 | 1 | 1 | 508 | 1 | 507 | 0.0 | 826 |
| Msa0845930 | MtrunA17_Chr3g0128171 | 84.035 | 451 | 71 | 1 | 50 | 499 | 1 | 451 | 0.0 | 764 |
| Msa0845930 | MtrunA17_Chr5g0420841 | 67.936 | 499 | 156 | 1 | 13 | 511 | 11 | 505 | 0.0 | 728 |
| Msa0845930 | MtrunA17_Chr3g0078791 | 78.995 | 438 | 72 | 1 | 64 | 501 | 8 | 425 | 0.0 | 709 |
| Msa0845930 | MtrunA17_Chr3g0085971 | 65.854 | 492 | 168 | 0 | 14 | 505 | 12 | 503 | 0.0 | 686 |
| Msa0845930 | MtrunA17_Chr4g0048411 | 69.062 | 501 | 154 | 1 | 13 | 513 | 13 | 512 | 0.0 | 681 |
| Msa0845930 | MtrunA17_Chr4g0048051 | 68.110 | 508 | 161 | 1 | 6 | 513 | 6 | 512 | 0.0 | 660 |
| Msa0845930 | MtrunA17_Chr5g0437021 | 62.275 | 501 | 186 | 2 | 1 | 501 | 1 | 498 | 0.0 | 623 |
| Msa0845930 | MtrunA17_Chr1g0164851 | 62.124 | 499 | 185 | 3 | 2 | 500 | 3 | 497 | 0.0 | 611 |
| Msa0845930 | MtrunA17_Chr1g0164871 | 61.924 | 499 | 186 | 3 | 2 | 500 | 3 | 497 | 0.0 | 609 |
| Msa0845930 | MtrunA17_Chr3g0078971 | 57.490 | 494 | 205 | 3 | 11 | 503 | 11 | 500 | 0.0 | 577 |
| Msa0845930 | MtrunA17_Chr5g0394341 | 54.118 | 510 | 218 | 3 | 14 | 509 | 13 | 520 | 0.0 | 567 |
| Msa0845930 | MtrunA17_Chr4g0065311 | 54.752 | 484 | 213 | 3 | 14 | 497 | 12 | 489 | 0.0 | 562 |
| Msa0845930 | MtrunA17_Chr5g0445601 | 55.600 | 500 | 212 | 4 | 1 | 496 | 1 | 494 | 0.0 | 561 |
| Msa0845930 | MtrunA17_Chr7g0257631 | 55.556 | 504 | 214 | 4 | 1 | 500 | 35 | 532 | 0.0 | 555 |
| Msa0845930 | MtrunA17_Chr1g0205671 | 52.789 | 502 | 233 | 3 | 1 | 501 | 1 | 499 | 0.0 | 543 |
| Msa0845930 | MtrunA17_Chr4g0065324 | 52.525 | 495 | 228 | 4 | 2 | 496 | 9 | 496 | 0.0 | 542 |
| Msa0845930 | MtrunA17_Chr1g0205681 | 52.590 | 502 | 235 | 2 | 1 | 501 | 1 | 500 | 0.0 | 532 |
| Msa0845930 | MtrunA17_Chr1g0205691 | 52.632 | 513 | 239 | 3 | 1 | 512 | 1 | 510 | 0.0 | 530 |
| Msa0845930 | MtrunA17_Chr3g0078991 | 54.582 | 502 | 222 | 4 | 1 | 500 | 1 | 498 | 0.0 | 529 |
| Msa0845930 | MtrunA17_Chr3g0115751 | 50.392 | 510 | 241 | 6 | 1 | 503 | 1 | 505 | 0.0 | 526 |
| Msa0845930 | MtrunA17_Chr3g0115721 | 50.980 | 510 | 243 | 5 | 1 | 508 | 1 | 505 | 0.0 | 523 |
| Msa0845930 | MtrunA17_Chr6g0486681 | 51.751 | 514 | 239 | 5 | 1 | 510 | 1 | 509 | 0.0 | 521 |
| Msa0845930 | MtrunA17_Chr6g0486671 | 51.751 | 514 | 239 | 5 | 1 | 510 | 1 | 509 | 0.0 | 521 |
| Msa0845930 | MtrunA17_Chr3g0115741 | 48.444 | 514 | 255 | 6 | 1 | 509 | 1 | 509 | 6.72e-180 | 515 |
| Msa0845930 | MtrunA17_Chr3g0115711 | 50.888 | 507 | 243 | 4 | 1 | 506 | 1 | 502 | 2.13e-179 | 513 |
| Msa0845930 | MtrunA17_Chr8g0390141 | 50.499 | 501 | 237 | 6 | 15 | 513 | 18 | 509 | 2.32e-178 | 511 |
| Msa0845930 | MtrunA17_Chr8g0390261 | 51.434 | 488 | 229 | 5 | 15 | 500 | 18 | 499 | 7.13e-175 | 502 |
| Msa0845930 | MtrunA17_Chr3g0115781 | 48.733 | 513 | 254 | 6 | 1 | 509 | 1 | 508 | 2.48e-174 | 501 |
| Msa0845930 | MtrunA17_Chr3g0115731 | 47.070 | 512 | 229 | 8 | 1 | 503 | 1 | 479 | 4.05e-158 | 459 |
| Msa0845930 | MtrunA17_Chr4g0065351 | 52.137 | 351 | 164 | 2 | 162 | 512 | 1 | 347 | 1.16e-129 | 381 |
| Msa0845930 | MtrunA17_Chr5g0446681 | 65.761 | 184 | 25 | 2 | 1 | 184 | 1 | 146 | 4.58e-67 | 218 |
| Msa0845930 | MtrunA17_Chr5g0446681 | 62.434 | 189 | 57 | 4 | 330 | 514 | 111 | 289 | 5.78e-61 | 202 |
| Msa0845930 | MtrunA17_Chr6g0485661 | 28.510 | 463 | 296 | 8 | 28 | 480 | 63 | 500 | 1.04e-58 | 202 |
| Msa0845930 | MtrunA17_Chr4g0034681 | 27.692 | 520 | 328 | 10 | 13 | 509 | 16 | 510 | 1.73e-58 | 202 |
| Msa0845930 | MtrunA17_Chr8g0390521 | 27.879 | 495 | 319 | 10 | 8 | 490 | 3 | 471 | 3.51e-58 | 201 |
| Msa0845930 | MtrunA17_Chr8g0373531 | 30.572 | 507 | 305 | 13 | 9 | 493 | 4 | 485 | 1.71e-57 | 199 |
| Msa0845930 | MtrunA17_Chr7g0214451 | 27.163 | 497 | 324 | 10 | 20 | 511 | 30 | 493 | 3.74e-56 | 195 |
| Msa0845930 | MtrunA17_Chr5g0432581 | 28.817 | 524 | 327 | 11 | 6 | 508 | 2 | 500 | 9.86e-55 | 191 |
| Msa0845930 | MtrunA17_Chr3g0144361 | 27.416 | 507 | 314 | 11 | 13 | 492 | 14 | 493 | 1.29e-53 | 189 |
| Msa0845930 | MtrunA17_Chr4g0036021 | 28.489 | 523 | 313 | 14 | 1 | 492 | 1 | 493 | 1.78e-53 | 188 |
| Msa0845930 | MtrunA17_Chr1g0213611 | 27.869 | 488 | 311 | 12 | 20 | 495 | 75 | 533 | 4.20e-51 | 182 |
| Msa0845930 | MtrunA17_Chr7g0250881 | 28.390 | 472 | 306 | 8 | 16 | 486 | 58 | 498 | 1.40e-50 | 180 |
| Msa0845930 | MtrunA17_Chr4g0021771 | 26.033 | 484 | 319 | 11 | 20 | 493 | 51 | 505 | 2.40e-49 | 177 |
| Msa0845930 | MtrunA17_Chr4g0039651 | 29.375 | 480 | 283 | 12 | 31 | 488 | 53 | 498 | 3.27e-49 | 176 |
| Msa0845930 | MtrunA17_Chr1g0213631 | 28.000 | 400 | 272 | 8 | 103 | 495 | 47 | 437 | 1.17e-48 | 174 |
| Msa0845930 | MtrunA17_Chr2g0282031 | 25.462 | 487 | 316 | 11 | 20 | 492 | 49 | 502 | 2.72e-48 | 174 |
| Msa0845930 | MtrunA17_Chr6g0457781 | 29.175 | 473 | 299 | 9 | 17 | 486 | 99 | 538 | 8.41e-48 | 174 |
| Msa0845930 | MtrunA17_Chr4g0065341 | 49.020 | 153 | 76 | 1 | 2 | 154 | 6 | 156 | 1.83e-47 | 162 |
| Msa0845930 | MtrunA17_Chr8g0373181 | 28.755 | 466 | 299 | 8 | 23 | 486 | 47 | 481 | 1.32e-46 | 169 |
| Msa0845930 | MtrunA17_Chr3g0115771 | 33.762 | 311 | 152 | 8 | 156 | 461 | 9 | 270 | 6.40e-46 | 162 |
| Msa0845930 | MtrunA17_Chr1g0155221 | 28.676 | 408 | 274 | 7 | 84 | 486 | 89 | 484 | 2.44e-45 | 166 |
| Msa0845930 | MtrunA17_Chr4g0032021 | 29.545 | 484 | 296 | 16 | 23 | 488 | 96 | 552 | 1.47e-44 | 165 |
| Msa0845930 | MtrunA17_Chr2g0303701 | 32.143 | 336 | 204 | 7 | 20 | 351 | 23 | 338 | 2.19e-43 | 162 |
| Msa0845930 | MtrunA17_Chr2g0290181 | 29.752 | 363 | 225 | 7 | 20 | 372 | 24 | 366 | 1.00e-41 | 157 |
| Msa0845930 | MtrunA17_Chr2g0303731 | 31.195 | 343 | 205 | 8 | 20 | 353 | 23 | 343 | 1.12e-41 | 157 |
| Msa0845930 | MtrunA17_Chr5g0403831 | 27.851 | 456 | 297 | 10 | 77 | 508 | 64 | 511 | 1.56e-41 | 155 |
| Msa0845930 | MtrunA17_Chr8g0373191 | 31.268 | 355 | 228 | 6 | 136 | 486 | 111 | 453 | 3.88e-41 | 154 |
| Msa0845930 | MtrunA17_Chr7g0228781 | 44.886 | 176 | 62 | 3 | 13 | 153 | 28 | 203 | 8.47e-41 | 145 |
| Msa0845930 | MtrunA17_Chr7g0273281 | 25.690 | 471 | 306 | 9 | 21 | 486 | 60 | 491 | 1.77e-40 | 152 |
| Msa0845930 | MtrunA17_Chr7g0259471 | 28.019 | 414 | 273 | 8 | 81 | 488 | 77 | 471 | 5.31e-40 | 150 |
| Msa0845930 | MtrunA17_Chr8g0376631 | 30.409 | 342 | 209 | 7 | 20 | 353 | 23 | 343 | 8.79e-40 | 152 |
| Msa0845930 | MtrunA17_Chr8g0376601 | 29.942 | 344 | 208 | 6 | 18 | 351 | 21 | 341 | 2.64e-39 | 150 |
| Msa0845930 | MtrunA17_Chr8g0376611 | 32.482 | 274 | 175 | 5 | 85 | 351 | 4 | 274 | 8.12e-39 | 148 |
| Msa0845930 | MtrunA17_Chr4g0066581 | 27.972 | 429 | 279 | 11 | 65 | 486 | 77 | 482 | 9.95e-38 | 144 |
| Msa0845930 | MtrunA17_Chr3g0119401 | 27.206 | 408 | 269 | 11 | 89 | 486 | 139 | 528 | 2.04e-36 | 142 |
| Msa0845930 | MtrunA17_Chr7g0259221 | 27.696 | 408 | 272 | 8 | 84 | 486 | 82 | 471 | 1.79e-35 | 138 |
| Msa0845930 | MtrunA17_Chr2g0286721 | 26.230 | 427 | 289 | 12 | 65 | 486 | 74 | 479 | 1.02e-34 | 136 |
| Msa0845930 | MtrunA17_Chr3g0121674 | 28.428 | 299 | 204 | 6 | 206 | 499 | 2 | 295 | 5.80e-33 | 127 |
| Msa0845930 | MtrunA17_Chr2g0290161 | 30.651 | 261 | 143 | 5 | 103 | 353 | 22 | 254 | 7.38e-32 | 128 |
| Msa0845930 | MtrunA17_Chr4g0004821 | 24.272 | 412 | 292 | 6 | 79 | 486 | 73 | 468 | 2.10e-30 | 124 |
| Msa0845930 | MtrunA17_Chr6g0486021 | 24.155 | 414 | 296 | 6 | 78 | 487 | 84 | 483 | 1.37e-29 | 121 |
| Msa0845930 | MtrunA17_Chr3g0115761 | 50.962 | 104 | 49 | 1 | 50 | 153 | 1 | 102 | 1.42e-27 | 107 |
| Msa0845930 | MtrunA17_Chr3g0144261 | 36.364 | 154 | 96 | 2 | 108 | 260 | 68 | 220 | 3.90e-21 | 97.4 |
| Msa0845930 | MtrunA17_Chr3g0144261 | 25.403 | 248 | 157 | 5 | 257 | 484 | 472 | 711 | 4.53e-15 | 78.2 |
| Msa0845930 | MtrunA17_Chr5g0434231 | 29.379 | 177 | 99 | 1 | 83 | 259 | 4 | 154 | 8.37e-20 | 86.3 |
| Msa0845930 | MtrunA17_Chr5g0404191 | 27.208 | 283 | 173 | 7 | 4 | 281 | 28 | 282 | 1.50e-19 | 89.4 |
| Msa0845930 | MtrunA17_Chr5g0407441 | 28.270 | 237 | 147 | 6 | 22 | 256 | 3 | 218 | 2.41e-19 | 91.7 |
| Msa0845930 | MtrunA17_Chr5g0419321 | 28.324 | 173 | 122 | 2 | 85 | 256 | 75 | 246 | 4.31e-18 | 87.8 |
| Msa0845930 | MtrunA17_Chr8g0370141 | 24.214 | 318 | 195 | 7 | 22 | 330 | 3 | 283 | 5.14e-18 | 85.9 |
| Msa0845930 | MtrunA17_Chr3g0146061 | 32.353 | 170 | 113 | 2 | 92 | 260 | 54 | 222 | 8.85e-17 | 83.6 |
| Msa0845930 | MtrunA17_Chr7g0273261 | 25.000 | 220 | 153 | 3 | 276 | 495 | 33 | 240 | 2.76e-15 | 75.9 |
| Msa0845930 | MtrunA17_Chr1g0211861 | 54.688 | 64 | 28 | 1 | 348 | 411 | 31 | 93 | 1.02e-13 | 67.8 |
| Msa0845930 | MtrunA17_Chr8g0370151 | 28.700 | 223 | 140 | 6 | 273 | 484 | 128 | 342 | 1.41e-13 | 72.4 |
| Msa0845930 | MtrunA17_Chr7g0273271 | 30.556 | 144 | 93 | 2 | 84 | 227 | 67 | 203 | 1.68e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845930 | AT1G11260.1 | 69.006 | 513 | 157 | 2 | 2 | 514 | 3 | 513 | 0.0 | 705 |
| Msa0845930 | AT4G21480.1 | 69.450 | 491 | 147 | 2 | 13 | 503 | 13 | 500 | 0.0 | 670 |
| Msa0845930 | AT3G19930.1 | 64.200 | 500 | 176 | 2 | 1 | 500 | 1 | 497 | 0.0 | 630 |
| Msa0845930 | AT3G19930.2 | 64.200 | 500 | 176 | 2 | 1 | 500 | 1 | 497 | 0.0 | 630 |
| Msa0845930 | AT5G23270.1 | 60.800 | 500 | 194 | 2 | 1 | 499 | 1 | 499 | 0.0 | 612 |
| Msa0845930 | AT3G19940.1 | 60.324 | 494 | 188 | 4 | 19 | 512 | 21 | 506 | 0.0 | 597 |
| Msa0845930 | AT1G50310.1 | 59.192 | 495 | 193 | 5 | 19 | 512 | 21 | 507 | 0.0 | 588 |
| Msa0845930 | AT5G26340.1 | 54.990 | 511 | 224 | 3 | 1 | 510 | 1 | 506 | 0.0 | 579 |
| Msa0845930 | AT4G02050.2 | 52.918 | 514 | 232 | 4 | 1 | 510 | 1 | 508 | 0.0 | 564 |
| Msa0845930 | AT4G02050.1 | 52.918 | 514 | 232 | 4 | 1 | 510 | 1 | 508 | 0.0 | 564 |
| Msa0845930 | AT1G34580.1 | 51.085 | 507 | 237 | 6 | 1 | 501 | 1 | 502 | 3.30e-179 | 513 |
| Msa0845930 | AT1G77210.2 | 48.317 | 505 | 252 | 5 | 1 | 501 | 1 | 500 | 1.87e-177 | 509 |
| Msa0845930 | AT1G77210.1 | 48.317 | 505 | 252 | 5 | 1 | 501 | 1 | 500 | 1.87e-177 | 509 |
| Msa0845930 | AT1G07340.1 | 51.093 | 503 | 238 | 5 | 1 | 501 | 1 | 497 | 1.37e-174 | 501 |
| Msa0845930 | AT5G26250.1 | 50.588 | 510 | 242 | 5 | 6 | 514 | 5 | 505 | 4.74e-174 | 500 |
| Msa0845930 | AT5G61520.1 | 52.104 | 499 | 226 | 5 | 17 | 510 | 18 | 508 | 4.97e-171 | 493 |
| Msa0845930 | AT3G05960.1 | 49.705 | 509 | 245 | 7 | 8 | 514 | 6 | 505 | 4.60e-170 | 490 |
| Msa0845930 | AT1G34580.2 | 50.985 | 457 | 214 | 5 | 50 | 501 | 1 | 452 | 9.73e-162 | 467 |
| Msa0845930 | AT5G61520.2 | 51.304 | 460 | 214 | 4 | 49 | 503 | 2 | 456 | 1.22e-155 | 452 |
| Msa0845930 | AT1G50310.2 | 59.280 | 361 | 139 | 4 | 153 | 512 | 11 | 364 | 3.01e-151 | 437 |
| Msa0845930 | AT1G77210.3 | 48.571 | 350 | 175 | 3 | 153 | 501 | 6 | 351 | 3.99e-121 | 360 |
| Msa0845930 | AT2G16120.1 | 29.615 | 493 | 302 | 10 | 22 | 493 | 24 | 492 | 8.51e-65 | 219 |
| Msa0845930 | AT2G16130.1 | 28.794 | 514 | 314 | 11 | 22 | 514 | 24 | 506 | 1.41e-63 | 216 |
| Msa0845930 | AT2G18480.1 | 29.350 | 477 | 285 | 11 | 37 | 490 | 36 | 483 | 1.89e-60 | 207 |
| Msa0845930 | AT3G18830.1 | 29.470 | 509 | 307 | 14 | 25 | 510 | 37 | 516 | 3.07e-60 | 207 |
| Msa0845930 | AT4G36670.1 | 28.889 | 495 | 300 | 12 | 22 | 492 | 15 | 481 | 2.46e-57 | 199 |
| Msa0845930 | AT2G43330.1 | 28.632 | 475 | 310 | 7 | 26 | 495 | 34 | 484 | 1.34e-54 | 192 |
| Msa0845930 | AT1G75220.1 | 29.612 | 412 | 274 | 6 | 84 | 491 | 88 | 487 | 1.02e-47 | 172 |
| Msa0845930 | AT5G16150.2 | 28.753 | 473 | 301 | 9 | 17 | 486 | 99 | 538 | 5.01e-47 | 172 |
| Msa0845930 | AT5G16150.1 | 28.753 | 473 | 301 | 9 | 17 | 486 | 99 | 538 | 5.01e-47 | 172 |
| Msa0845930 | AT5G16150.3 | 28.753 | 473 | 301 | 9 | 17 | 486 | 99 | 538 | 5.01e-47 | 172 |
| Msa0845930 | AT5G59250.1 | 30.333 | 511 | 303 | 15 | 3 | 488 | 72 | 554 | 2.39e-46 | 170 |
| Msa0845930 | AT2G20780.1 | 25.417 | 480 | 321 | 11 | 20 | 491 | 51 | 501 | 1.53e-44 | 164 |
| Msa0845930 | AT5G17010.1 | 28.692 | 474 | 294 | 12 | 31 | 488 | 55 | 500 | 9.53e-44 | 162 |
| Msa0845930 | AT5G17010.3 | 28.692 | 474 | 294 | 12 | 31 | 488 | 55 | 500 | 9.53e-44 | 162 |
| Msa0845930 | AT5G17010.4 | 28.692 | 474 | 294 | 12 | 31 | 488 | 55 | 500 | 9.53e-44 | 162 |
| Msa0845930 | AT4G16480.2 | 31.006 | 358 | 217 | 6 | 20 | 367 | 24 | 361 | 2.83e-43 | 162 |
| Msa0845930 | AT4G16480.3 | 31.006 | 358 | 217 | 6 | 20 | 367 | 24 | 361 | 2.83e-43 | 162 |
| Msa0845930 | AT4G16480.1 | 31.006 | 358 | 217 | 6 | 20 | 367 | 24 | 361 | 2.83e-43 | 162 |
| Msa0845930 | AT1G08900.5 | 28.087 | 413 | 268 | 7 | 84 | 488 | 23 | 414 | 3.67e-43 | 159 |
| Msa0845930 | AT2G20780.2 | 26.585 | 410 | 286 | 7 | 89 | 491 | 42 | 443 | 5.07e-43 | 159 |
| Msa0845930 | AT2G35740.1 | 31.476 | 359 | 212 | 9 | 21 | 367 | 24 | 360 | 5.80e-43 | 161 |
| Msa0845930 | AT1G08900.3 | 28.087 | 413 | 268 | 7 | 84 | 488 | 57 | 448 | 6.40e-43 | 159 |
| Msa0845930 | AT1G08900.1 | 28.087 | 413 | 268 | 7 | 84 | 488 | 65 | 456 | 7.32e-43 | 159 |
| Msa0845930 | AT1G08900.2 | 28.087 | 413 | 268 | 7 | 84 | 488 | 65 | 456 | 7.32e-43 | 159 |
| Msa0845930 | AT1G19450.1 | 29.126 | 412 | 276 | 6 | 84 | 491 | 89 | 488 | 7.50e-43 | 159 |
| Msa0845930 | AT4G04760.3 | 27.885 | 416 | 280 | 5 | 84 | 494 | 12 | 412 | 9.92e-43 | 157 |
| Msa0845930 | AT1G08930.1 | 27.536 | 414 | 271 | 6 | 84 | 489 | 98 | 490 | 1.78e-42 | 158 |
| Msa0845930 | AT1G08930.2 | 27.536 | 414 | 271 | 6 | 84 | 489 | 98 | 490 | 1.78e-42 | 158 |
| Msa0845930 | AT4G04760.1 | 27.885 | 416 | 280 | 5 | 84 | 494 | 71 | 471 | 3.20e-42 | 157 |
| Msa0845930 | AT5G27360.1 | 25.820 | 488 | 316 | 8 | 13 | 494 | 25 | 472 | 3.68e-42 | 157 |
| Msa0845930 | AT3G05165.3 | 29.280 | 403 | 268 | 6 | 86 | 486 | 72 | 459 | 6.68e-42 | 156 |
| Msa0845930 | AT3G05165.2 | 29.280 | 403 | 268 | 6 | 86 | 486 | 72 | 459 | 6.68e-42 | 156 |
| Msa0845930 | AT3G05165.1 | 29.280 | 403 | 268 | 6 | 86 | 486 | 72 | 459 | 6.68e-42 | 156 |
| Msa0845930 | AT5G27360.3 | 25.610 | 492 | 320 | 8 | 9 | 494 | 69 | 520 | 1.64e-41 | 156 |
| Msa0845930 | AT3G03090.1 | 28.842 | 475 | 290 | 12 | 31 | 487 | 55 | 499 | 9.94e-41 | 154 |
| Msa0845930 | AT3G05160.3 | 28.288 | 403 | 272 | 6 | 86 | 486 | 14 | 401 | 1.13e-40 | 151 |
| Msa0845930 | AT3G05160.2 | 28.288 | 403 | 272 | 6 | 86 | 486 | 14 | 401 | 1.13e-40 | 151 |
| Msa0845930 | AT3G05160.1 | 28.288 | 403 | 272 | 6 | 86 | 486 | 63 | 450 | 1.92e-40 | 152 |
| Msa0845930 | AT5G27350.1 | 27.981 | 411 | 268 | 7 | 93 | 494 | 77 | 468 | 1.42e-39 | 150 |
| Msa0845930 | AT5G18840.1 | 26.389 | 432 | 300 | 7 | 65 | 493 | 65 | 481 | 1.78e-39 | 150 |
| Msa0845930 | AT1G30220.1 | 29.326 | 341 | 214 | 5 | 20 | 353 | 25 | 345 | 1.84e-39 | 151 |
| Msa0845930 | AT4G04750.1 | 27.098 | 417 | 273 | 7 | 84 | 490 | 76 | 471 | 3.82e-39 | 149 |
| Msa0845930 | AT4G04750.2 | 27.098 | 417 | 273 | 7 | 84 | 490 | 76 | 471 | 3.82e-39 | 149 |
| Msa0845930 | AT4G04750.3 | 27.098 | 417 | 273 | 7 | 84 | 490 | 120 | 515 | 4.53e-39 | 149 |
| Msa0845930 | AT2G48020.2 | 26.277 | 411 | 280 | 7 | 84 | 489 | 68 | 460 | 6.28e-39 | 148 |
| Msa0845930 | AT2G48020.1 | 26.277 | 411 | 280 | 7 | 84 | 489 | 68 | 460 | 6.28e-39 | 148 |
| Msa0845930 | AT1G08890.1 | 26.764 | 411 | 272 | 7 | 84 | 486 | 67 | 456 | 1.44e-38 | 147 |
| Msa0845930 | AT5G27360.2 | 27.493 | 371 | 244 | 6 | 130 | 494 | 17 | 368 | 1.45e-38 | 145 |
| Msa0845930 | AT5G27360.5 | 27.493 | 371 | 244 | 6 | 130 | 494 | 17 | 368 | 1.45e-38 | 145 |
| Msa0845930 | AT3G05165.6 | 28.571 | 392 | 263 | 6 | 86 | 475 | 72 | 448 | 1.26e-37 | 145 |
| Msa0845930 | AT4G04760.2 | 27.033 | 418 | 278 | 7 | 84 | 494 | 71 | 468 | 7.65e-37 | 142 |
| Msa0845930 | AT1G54730.2 | 26.471 | 408 | 277 | 8 | 84 | 486 | 72 | 461 | 1.11e-36 | 142 |
| Msa0845930 | AT3G05155.1 | 24.842 | 475 | 319 | 8 | 13 | 486 | 17 | 454 | 1.20e-36 | 141 |
| Msa0845930 | AT3G05165.4 | 29.769 | 346 | 226 | 6 | 86 | 429 | 72 | 402 | 1.72e-36 | 141 |
| Msa0845930 | AT3G05165.5 | 29.769 | 346 | 226 | 6 | 86 | 429 | 72 | 402 | 1.72e-36 | 141 |
| Msa0845930 | AT1G08900.4 | 27.540 | 374 | 242 | 7 | 84 | 449 | 65 | 417 | 8.19e-36 | 139 |
| Msa0845930 | AT3G05400.1 | 27.340 | 406 | 276 | 8 | 84 | 486 | 66 | 455 | 3.41e-35 | 137 |
| Msa0845930 | AT3G20460.1 | 25.185 | 405 | 286 | 5 | 84 | 486 | 93 | 482 | 3.48e-34 | 135 |
| Msa0845930 | AT3G05400.2 | 29.223 | 373 | 244 | 9 | 118 | 486 | 79 | 435 | 4.01e-34 | 134 |
| Msa0845930 | AT3G05150.1 | 27.711 | 415 | 270 | 10 | 84 | 489 | 75 | 468 | 1.09e-33 | 133 |
| Msa0845930 | AT3G05150.3 | 27.711 | 415 | 270 | 10 | 84 | 489 | 75 | 468 | 1.09e-33 | 133 |
| Msa0845930 | AT3G05150.2 | 27.711 | 415 | 270 | 10 | 84 | 489 | 75 | 468 | 1.24e-33 | 133 |
| Msa0845930 | AT1G05030.2 | 27.586 | 406 | 271 | 10 | 89 | 487 | 73 | 462 | 1.59e-33 | 133 |
| Msa0845930 | AT1G05030.1 | 27.586 | 406 | 271 | 10 | 89 | 487 | 125 | 514 | 1.66e-33 | 134 |
| Msa0845930 | AT5G27360.4 | 24.824 | 427 | 263 | 9 | 9 | 423 | 21 | 401 | 6.53e-31 | 125 |
| Msa0845930 | AT1G08920.1 | 25.243 | 412 | 277 | 8 | 84 | 486 | 72 | 461 | 8.39e-31 | 125 |
| Msa0845930 | AT1G54730.5 | 25.182 | 413 | 255 | 9 | 84 | 486 | 72 | 440 | 1.23e-30 | 124 |
| Msa0845930 | AT1G08920.2 | 25.121 | 414 | 282 | 8 | 84 | 486 | 72 | 468 | 1.48e-30 | 124 |
| Msa0845930 | AT1G54730.3 | 25.606 | 371 | 253 | 8 | 84 | 449 | 72 | 424 | 3.01e-30 | 123 |
| Msa0845930 | AT1G79820.2 | 25.051 | 487 | 316 | 12 | 9 | 486 | 40 | 486 | 1.02e-29 | 122 |
| Msa0845930 | AT1G79820.1 | 25.051 | 487 | 316 | 12 | 9 | 486 | 40 | 486 | 1.02e-29 | 122 |
| Msa0845930 | AT1G67300.1 | 25.732 | 478 | 309 | 14 | 24 | 494 | 55 | 493 | 2.62e-29 | 121 |
| Msa0845930 | AT1G67300.3 | 25.732 | 478 | 309 | 14 | 24 | 494 | 55 | 493 | 2.62e-29 | 121 |
| Msa0845930 | AT1G67300.2 | 25.732 | 478 | 310 | 15 | 24 | 494 | 55 | 494 | 2.65e-29 | 121 |
| Msa0845930 | AT1G67300.6 | 25.986 | 431 | 273 | 14 | 24 | 448 | 55 | 445 | 3.03e-26 | 111 |
| Msa0845930 | AT1G67300.7 | 25.986 | 431 | 273 | 14 | 24 | 448 | 55 | 445 | 3.03e-26 | 111 |
| Msa0845930 | AT1G67300.4 | 26.277 | 411 | 258 | 13 | 24 | 428 | 55 | 426 | 1.41e-25 | 109 |
| Msa0845930 | AT1G67300.5 | 26.277 | 411 | 258 | 13 | 24 | 428 | 55 | 426 | 1.41e-25 | 109 |
| Msa0845930 | AT1G08920.3 | 24.533 | 375 | 252 | 8 | 84 | 449 | 72 | 424 | 4.75e-25 | 108 |
| Msa0845930 | AT2G48020.4 | 27.119 | 295 | 197 | 6 | 84 | 373 | 68 | 349 | 9.67e-25 | 106 |
| Msa0845930 | AT1G54730.9 | 25.071 | 351 | 240 | 8 | 84 | 429 | 72 | 404 | 1.33e-24 | 106 |
| Msa0845930 | AT1G54730.7 | 25.071 | 351 | 240 | 8 | 84 | 429 | 72 | 404 | 1.33e-24 | 106 |
| Msa0845930 | AT1G54730.4 | 24.202 | 376 | 231 | 9 | 84 | 449 | 72 | 403 | 2.09e-24 | 105 |
| Msa0845930 | AT2G48020.3 | 28.000 | 275 | 180 | 6 | 84 | 353 | 68 | 329 | 6.35e-24 | 103 |
| Msa0845930 | AT5G17010.2 | 25.053 | 475 | 250 | 13 | 31 | 488 | 52 | 437 | 1.70e-22 | 100 |
| Msa0845930 | AT3G51490.2 | 31.984 | 247 | 145 | 8 | 23 | 267 | 4 | 229 | 3.05e-22 | 101 |
| Msa0845930 | AT3G51490.2 | 26.106 | 226 | 148 | 3 | 273 | 487 | 500 | 717 | 4.00e-13 | 72.4 |
| Msa0845930 | AT3G51490.1 | 31.984 | 247 | 145 | 8 | 23 | 267 | 4 | 229 | 3.18e-22 | 100 |
| Msa0845930 | AT1G79820.4 | 24.194 | 434 | 281 | 11 | 9 | 434 | 40 | 433 | 6.94e-22 | 99.0 |
| Msa0845930 | AT1G54730.11 | 26.740 | 273 | 186 | 6 | 84 | 353 | 72 | 333 | 9.50e-22 | 97.1 |
| Msa0845930 | AT3G51490.3 | 34.783 | 161 | 103 | 2 | 108 | 267 | 20 | 179 | 1.36e-20 | 95.9 |
| Msa0845930 | AT3G51490.3 | 26.106 | 226 | 148 | 3 | 273 | 487 | 450 | 667 | 4.04e-13 | 72.4 |
| Msa0845930 | AT1G20840.2 | 31.343 | 201 | 127 | 4 | 80 | 270 | 33 | 232 | 5.96e-20 | 94.0 |
| Msa0845930 | AT1G20840.1 | 31.343 | 201 | 127 | 4 | 80 | 270 | 33 | 232 | 5.96e-20 | 94.0 |
| Msa0845930 | AT1G54730.10 | 26.721 | 247 | 170 | 5 | 84 | 327 | 72 | 310 | 6.60e-20 | 91.3 |
| Msa0845930 | AT1G54730.6 | 26.721 | 247 | 170 | 5 | 84 | 327 | 72 | 310 | 6.60e-20 | 91.3 |
| Msa0845930 | AT3G05155.2 | 23.099 | 342 | 229 | 7 | 13 | 353 | 17 | 325 | 8.63e-20 | 90.9 |
| Msa0845930 | AT1G54730.8 | 23.596 | 356 | 218 | 9 | 84 | 429 | 72 | 383 | 3.59e-19 | 90.1 |
| Msa0845930 | AT1G79820.3 | 23.045 | 486 | 279 | 11 | 9 | 486 | 40 | 438 | 1.95e-18 | 88.2 |
| Msa0845930 | AT4G35300.4 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.8 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.6 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.11 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.1 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.10 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.7 | 33.974 | 156 | 101 | 2 | 108 | 262 | 70 | 224 | 1.10e-16 | 84.0 |
| Msa0845930 | AT4G35300.9 | 34.416 | 154 | 99 | 2 | 108 | 260 | 70 | 222 | 1.17e-16 | 83.6 |
| Msa0845930 | AT4G35300.2 | 34.416 | 154 | 99 | 2 | 108 | 260 | 70 | 222 | 1.17e-16 | 83.6 |
| Msa0845930 | AT4G35300.3 | 34.416 | 154 | 99 | 2 | 108 | 260 | 70 | 222 | 1.17e-16 | 83.6 |
Find 117 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGCCACAGTTGATAAATT+TGG | 0.190699 | 5_4:-25343511 | Msa0845930:CDS |
| GCTGCTCTTGTCGCTTCTAT+TGG | 0.213632 | 5_4:-25345020 | Msa0845930:CDS |
| AAGAGCTCCTCTATACTTAT+AGG | 0.241543 | 5_4:+25344038 | None:intergenic |
| AGGCGTATCACCATGCTTTC+TGG | 0.263685 | 5_4:-25344969 | Msa0845930:CDS |
| AACTCTTGATCATTGGGTTT+GGG | 0.266386 | 5_4:+25342916 | None:intergenic |
| CTGCTCTTGTCGCTTCTATT+GGG | 0.266514 | 5_4:-25345019 | Msa0845930:CDS |
| GTTTGTGTTATTGCTGCTTT+TGG | 0.275171 | 5_4:-25345418 | Msa0845930:CDS |
| ATTGCTATTGCGATTAAGTT+TGG | 0.282410 | 5_4:-25343324 | Msa0845930:CDS |
| CTTGCTGGTGCTGCCATGAA+TGG | 0.297735 | 5_4:-25344933 | Msa0845930:CDS |
| TGAAGGATGGCGTTATAGTT+TGG | 0.298754 | 5_4:-25343932 | Msa0845930:CDS |
| AGCAGGATTTGCATGGTCTT+GGG | 0.300869 | 5_4:-25343229 | Msa0845930:CDS |
| ATGCTTTGTCACATGAAGTT+TGG | 0.308189 | 5_4:-25343084 | Msa0845930:CDS |
| TAACTCTTGATCATTGGGTT+TGG | 0.312116 | 5_4:+25342915 | None:intergenic |
| TATGGGAGAAGCATCCTTAT+TGG | 0.327378 | 5_4:-25342960 | Msa0845930:CDS |
| TGTCATCACAACAACGAAAA+AGG | 0.327801 | 5_4:+25343044 | None:intergenic |
| AAACCCAATGATCAAGAGTT+AGG | 0.328447 | 5_4:-25342913 | Msa0845930:CDS |
| TTGGGGTCCTCTTGGTTGGT+TGG | 0.331516 | 5_4:-25343211 | Msa0845930:CDS |
| CTCATGTCAGCCTTGATTAC+CGG | 0.332870 | 5_4:-25343565 | Msa0845930:CDS |
| TAGCAGGATTTGCATGGTCT+TGG | 0.335920 | 5_4:-25343230 | Msa0845930:CDS |
| ACGGTTGACATTTCTTCAAT+TGG | 0.344585 | 5_4:+25342982 | None:intergenic |
| CTTCCCTAACTCTTGATCAT+TGG | 0.345507 | 5_4:+25342909 | None:intergenic |
| TATTCAAATGTTAATTTGTC+AGG | 0.346446 | 5_4:-25343461 | Msa0845930:intron |
| GCCACCTCAGAAACATAAAT+TGG | 0.351695 | 5_4:+25344063 | None:intergenic |
| GAAGGATGGCGTTATAGTTT+GGG | 0.356280 | 5_4:-25343931 | Msa0845930:CDS |
| TTCTTGAGCAAAGCCATTCA+TGG | 0.356519 | 5_4:+25344920 | None:intergenic |
| GGCTATGATCTTGGCATCTC+AGG | 0.365171 | 5_4:-25345382 | Msa0845930:intron |
| ATCAAAGAACTTGGCGTGTC+AGG | 0.366550 | 5_4:+25343859 | None:intergenic |
| TTCCCTAACTCTTGATCATT+GGG | 0.367763 | 5_4:+25342910 | None:intergenic |
| ACCATCGGCACCAATGGGTC+TGG | 0.372155 | 5_4:-25345481 | Msa0845930:CDS |
| CGGTATCGGATGTGCTAATC+AGG | 0.372541 | 5_4:-25344859 | Msa0845930:intron |
| ATGGCTTTGCTCAAGAAGTT+TGG | 0.375078 | 5_4:-25344914 | Msa0845930:CDS |
| TCAGAATGATAAAGCCAAAA+AGG | 0.375574 | 5_4:-25343827 | Msa0845930:CDS |
| ATTGTTGGTCGTATGTTACT+TGG | 0.384615 | 5_4:-25344885 | Msa0845930:CDS |
| AAACACATAGTTGAGAATAT+TGG | 0.385390 | 5_4:+25343972 | None:intergenic |
| ATTGGAACTCCCTTCGTCTC+TGG | 0.388960 | 5_4:+25343000 | None:intergenic |
| TTAACAAAATCACTCCAATA+AGG | 0.391911 | 5_4:+25342946 | None:intergenic |
| TGATGAGGAGTTTCAAGATT+TGG | 0.393292 | 5_4:-25343773 | Msa0845930:CDS |
| GGCTGTCGAATTTGCAGTAC+TGG | 0.396012 | 5_4:+25345078 | None:intergenic |
| GGTCGTATGTTACTTGGATT+CGG | 0.398369 | 5_4:-25344879 | Msa0845930:CDS |
| CCAATAGTCTTGAACAAAAC+AGG | 0.398751 | 5_4:+25343607 | None:intergenic |
| CCTATGATAATCATTATTGC+AGG | 0.405603 | 5_4:+25343895 | None:intergenic |
| ATGGCGTTATAGTTTGGGTT+TGG | 0.409873 | 5_4:-25343926 | Msa0845930:CDS |
| GCATGGTCTTGGGGTCCTCT+TGG | 0.410090 | 5_4:-25343219 | Msa0845930:CDS |
| TGTAGGTGGAGTTACATCTA+TGG | 0.413919 | 5_4:-25345168 | Msa0845930:intron |
| GAAGATTTGAGCAATGATAA+AGG | 0.415896 | 5_4:+25343113 | None:intergenic |
| TCTTAACATGATGTTCCAAT+TGG | 0.429830 | 5_4:-25344019 | Msa0845930:CDS |
| GGTCTTGGGGTCCTCTTGGT+TGG | 0.430760 | 5_4:-25343215 | Msa0845930:CDS |
| GTTGTCGGATGGTCTTATAT+TGG | 0.430883 | 5_4:+25345100 | None:intergenic |
| GCGATTAAGTTTGGAGTAAG+TGG | 0.442886 | 5_4:-25343315 | Msa0845930:CDS |
| AGAGCTCCTCTATACTTATA+GGG | 0.442967 | 5_4:+25344039 | None:intergenic |
| CCTGCAATAATGATTATCAT+AGG | 0.450592 | 5_4:-25343895 | Msa0845930:CDS |
| CCATTCTTTCAGCAATTCAC+TGG | 0.455820 | 5_4:-25343655 | Msa0845930:CDS |
| CTTTCCACATGTCTATGAAA+AGG | 0.465576 | 5_4:-25345126 | Msa0845930:CDS |
| TTCCAATTGGCAATCACAAT+AGG | 0.469218 | 5_4:-25344006 | Msa0845930:CDS |
| ACGACAATTGCATACCACTT+TGG | 0.475986 | 5_4:+25343276 | None:intergenic |
| TGCATTTGTGTGTACGTAGC+AGG | 0.477703 | 5_4:-25343246 | Msa0845930:CDS |
| GGTGGTACCATCGGCACCAA+TGG | 0.478985 | 5_4:-25345487 | Msa0845930:CDS |
| GAAGTTTGGATGCTCATTGT+TGG | 0.482511 | 5_4:-25344900 | Msa0845930:CDS |
| TGCCTATTGTGATTGCCAAT+TGG | 0.485265 | 5_4:+25344004 | None:intergenic |
| ACGTGAATAATGTTAACGTT+TGG | 0.487606 | 5_4:+25345057 | None:intergenic |
| TTTGGAGTAAGTGGTGATCC+AGG | 0.489412 | 5_4:-25343306 | Msa0845930:CDS |
| CCCAGACCCATTGGTGCCGA+TGG | 0.495368 | 5_4:+25345480 | None:intergenic |
| TACCACTTTGGCAAAACACC+TGG | 0.496801 | 5_4:+25343288 | None:intergenic |
| CCATCGGCACCAATGGGTCT+GGG | 0.498323 | 5_4:-25345480 | Msa0845930:CDS |
| ATGTTACTTGGATTCGGTAT+CGG | 0.498538 | 5_4:-25344873 | Msa0845930:CDS |
| TTGAAGAAATGTCAACCGTA+TGG | 0.507805 | 5_4:-25342978 | Msa0845930:CDS |
| CCACGCTCTATCAAAGAACT+TGG | 0.508948 | 5_4:+25343850 | None:intergenic |
| AACCCAATGATCAAGAGTTA+GGG | 0.513526 | 5_4:-25342912 | Msa0845930:CDS |
| ACACAAACGAAGACGACTCT+AGG | 0.515002 | 5_4:+25345433 | None:intergenic |
| GGCGAGTGCGTTACATCCTC+CGG | 0.515090 | 5_4:+25343546 | None:intergenic |
| CCAGTGAATTGCTGAAAGAA+TGG | 0.517212 | 5_4:+25343655 | None:intergenic |
| TGCTCTTGTCGCTTCTATTG+GGG | 0.519153 | 5_4:-25345018 | Msa0845930:CDS |
| GTGGTACCATCGGCACCAAT+GGG | 0.522342 | 5_4:-25345486 | Msa0845930:CDS |
| GGCTAACTCGAGTGCTTGGA+AGG | 0.525316 | 5_4:-25344989 | Msa0845930:CDS |
| TCGTGGCTAACTCGAGTGCT+TGG | 0.528192 | 5_4:-25344993 | Msa0845930:CDS |
| TGAGTTACGATCACAATGGC+AGG | 0.535455 | 5_4:-25345508 | None:intergenic |
| GTTACATCCTCCGGTAATCA+AGG | 0.540963 | 5_4:+25343555 | None:intergenic |
| ATGGTGAGATGAGGTCTATA+CGG | 0.540991 | 5_4:+25343691 | None:intergenic |
| TGAAGAAATGTCAACCGTAT+GGG | 0.541053 | 5_4:-25342977 | Msa0845930:CDS |
| ATAATCTTTCCCAGACCCAT+TGG | 0.542067 | 5_4:+25345471 | None:intergenic |
| GAATTTGCAGTACTGGTTGT+CGG | 0.544078 | 5_4:+25345085 | None:intergenic |
| GTGGCTCCCTATAAGTATAG+AGG | 0.545753 | 5_4:-25344045 | Msa0845930:CDS |
| TTGCAGTACTGGTTGTCGGA+TGG | 0.553020 | 5_4:+25345089 | None:intergenic |
| AATCACAATAGGCATCTTTG+TGG | 0.559517 | 5_4:-25343995 | Msa0845930:CDS |
| CATCAACATCGGTTGTTCCA+CGG | 0.565370 | 5_4:+25343791 | None:intergenic |
| GCCAATTTATGTTTCTGAGG+TGG | 0.566533 | 5_4:-25344064 | Msa0845930:CDS |
| ATAAGGATGCTTCTCCCATA+CGG | 0.568142 | 5_4:+25342963 | None:intergenic |
| TCTTCCAAATTTATCAACTG+TGG | 0.570919 | 5_4:+25343507 | None:intergenic |
| GATAATCATTATTGCAGGGA+CGG | 0.571516 | 5_4:+25343900 | None:intergenic |
| GCAGGATTTGCATGGTCTTG+GGG | 0.571706 | 5_4:-25343228 | Msa0845930:CDS |
| AAGAACACCTCCAGAAAGCA+TGG | 0.593343 | 5_4:+25344959 | None:intergenic |
| GCTGCAGAGCGAACTTCAAG+TGG | 0.599279 | 5_4:+25343171 | None:intergenic |
| ATTCACGTCCTCTTTGTACG+TGG | 0.600495 | 5_4:-25345042 | Msa0845930:CDS |
| ACAATGGCAGGTGGTACCAT+CGG | 0.610355 | 5_4:-25345496 | Msa0845930:CDS |
| AAGAGCAGCCACGTACAAAG+AGG | 0.611334 | 5_4:+25345034 | None:intergenic |
| CCAAGTTCTTTGATAGAGCG+TGG | 0.611587 | 5_4:-25343850 | Msa0845930:CDS |
| TGGAACAACCGATGTTGATG+AGG | 0.613871 | 5_4:-25343788 | Msa0845930:CDS |
| GGGTCTGGGAAAGATTATCC+CGG | 0.617549 | 5_4:-25345466 | Msa0845930:CDS |
| TCAAGTGGGAATATTTCACT+AGG | 0.619880 | 5_4:+25343186 | None:intergenic |
| TGTGCCAATTTATGTTTCTG+AGG | 0.629041 | 5_4:-25344067 | Msa0845930:CDS |
| TTGAAACTCCTCATCAACAT+CGG | 0.632528 | 5_4:+25343780 | None:intergenic |
| AAGGAATTGATAAGTATCCG+TGG | 0.632528 | 5_4:-25343808 | Msa0845930:CDS |
| TCCACATGTCTATGAAAAGG+AGG | 0.633586 | 5_4:-25345123 | Msa0845930:CDS |
| GAATGGAATGAATATTGCCA+TGG | 0.636172 | 5_4:+25343672 | None:intergenic |
| CTATGATAATCATTATTGCA+GGG | 0.642807 | 5_4:+25343896 | None:intergenic |
| ATGTCAGCCTTGATTACCGG+AGG | 0.646997 | 5_4:-25343562 | Msa0845930:CDS |
| CTCGTCAACAAAGAGGCCCA+AGG | 0.648925 | 5_4:+25343715 | None:intergenic |
| TGTACGTAGCAGGATTTGCA+TGG | 0.650558 | 5_4:-25343236 | Msa0845930:CDS |
| TCGCTTCTATTGGGGCGTCG+TGG | 0.658489 | 5_4:-25345010 | Msa0845930:CDS |
| CGTATCACCATGCTTTCTGG+AGG | 0.663842 | 5_4:-25344966 | Msa0845930:CDS |
| ATACGGTCTCGTCAACAAAG+AGG | 0.669713 | 5_4:+25343708 | None:intergenic |
| CTGCAGAGCGAACTTCAAGT+GGG | 0.674256 | 5_4:+25343172 | None:intergenic |
| AATATTGCCATGGTGAGATG+AGG | 0.696056 | 5_4:+25343682 | None:intergenic |
| TGTGGCGATTGAAACGAGAG+TGG | 0.699255 | 5_4:+25343525 | None:intergenic |
| CTAGGAACCAACCAACCAAG+AGG | 0.699881 | 5_4:+25343204 | None:intergenic |
| GTTACGATCACAATGGCAGG+TGG | 0.717162 | 5_4:-25345505 | None:intergenic |
| GTATAGACCTCATCTCACCA+TGG | 0.746534 | 5_4:-25343689 | Msa0845930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAAATTATTTTGTATC+CGG | + | chr5_4:25343642-25343661 | None:intergenic | 10.0% |
| !! | TAAATATATAAAATGAGATA+TGG | - | chr5_4:25344086-25344105 | Msa0845930:intron | 10.0% |
| !!! | GTTTTAAAAGAATATATCTA+TGG | - | chr5_4:25343787-25343806 | Msa0845930:CDS | 15.0% |
| !! | TATATTAAATCTGATCAATT+CGG | + | chr5_4:25344128-25344147 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTAATCTATCTTA+GGG | + | chr5_4:25344183-25344202 | None:intergenic | 15.0% |
| !!! | TATTTAGTTTAATCTATCTT+AGG | + | chr5_4:25344184-25344203 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCAATATACA+TGG | - | chr5_4:25344259-25344278 | Msa0845930:intron | 15.0% |
| !!! | GGAAAGAATTTTTGTAAAAA+TGG | + | chr5_4:25343256-25343275 | None:intergenic | 20.0% |
| !! | AACAATCAAAAAGCAATATA+TGG | + | chr5_4:25343570-25343589 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTCTCTTTTTTTC+CGG | - | chr5_4:25343620-25343639 | Msa0845930:CDS | 20.0% |
| !!! | TATATTTTGATTATTTTGGG+TGG | - | chr5_4:25344035-25344054 | Msa0845930:CDS | 20.0% |
| !!! | GTGTTTTCTAAAATGAAAAA+CGG | - | chr5_4:25344441-25344460 | Msa0845930:intron | 20.0% |
| !!! | TATTCAAATGTTAATTTGTC+AGG | - | chr5_4:25344935-25344954 | Msa0845930:CDS | 20.0% |
| !!! | TTAATTTTTGGCTATGATCT+TGG | - | chr5_4:25343005-25343024 | Msa0845930:CDS | 25.0% |
| !!! | AAATATTCAGTTTCTAGTGA+CGG | + | chr5_4:25343155-25343174 | None:intergenic | 25.0% |
| ! | ATCACGAATTAGATTAAAGT+AGG | - | chr5_4:25343826-25343845 | Msa0845930:CDS | 25.0% |
| ! | AATTAGATTAAAGTAGGCAA+AGG | - | chr5_4:25343832-25343851 | Msa0845930:CDS | 25.0% |
| ! | AAGAATTACAAAATCAACGT+TGG | - | chr5_4:25343982-25344001 | Msa0845930:CDS | 25.0% |
| ! | CTTAGATACTTAGATTAGTA+TGG | - | chr5_4:25344204-25344223 | Msa0845930:intron | 25.0% |
| ! | AAACACATAGTTGAGAATAT+TGG | + | chr5_4:25344427-25344446 | None:intergenic | 25.0% |
| ! | CTATGATAATCATTATTGCA+GGG | + | chr5_4:25344503-25344522 | None:intergenic | 25.0% |
| !! | GATACTTATCAATTCCTTTT+TGG | + | chr5_4:25344586-25344605 | None:intergenic | 25.0% |
| ! | TAGTGATATTTCAAAAACTG+TGG | - | chr5_4:25344653-25344672 | Msa0845930:intron | 25.0% |
| ! | TTAACAAAATCACTCCAATA+AGG | + | chr5_4:25345453-25345472 | None:intergenic | 25.0% |
| !! | GCTTTTGGAGGTTTAATTTT+TGG | - | chr5_4:25342993-25343012 | Msa0845930:CDS | 30.0% |
| TCCTAAATCGATCACTAAAT+TGG | - | chr5_4:25343094-25343113 | Msa0845930:CDS | 30.0% | |
| ! | ACCAATTTAGTGATCGATTT+AGG | + | chr5_4:25343098-25343117 | None:intergenic | 30.0% |
| CATCATATATGTATGTGTGT+AGG | - | chr5_4:25343211-25343230 | Msa0845930:CDS | 30.0% | |
| ACGTGAATAATGTTAACGTT+TGG | + | chr5_4:25343342-25343361 | None:intergenic | 30.0% | |
| !! | GATAACTTTTGATTGCTACT+GGG | - | chr5_4:25343765-25343784 | Msa0845930:CDS | 30.0% |
| TAGTTTAATCTATCTTAGGG+CGG | + | chr5_4:25344180-25344199 | None:intergenic | 30.0% | |
| TCTCAATATACATGGTAACA+TGG | - | chr5_4:25344267-25344286 | Msa0845930:intron | 30.0% | |
| TCTTAACATGATGTTCCAAT+TGG | - | chr5_4:25344377-25344396 | Msa0845930:intron | 30.0% | |
| ! | TCTAAAATGAAAAACGGTGA+AGG | - | chr5_4:25344447-25344466 | Msa0845930:intron | 30.0% |
| CCTATGATAATCATTATTGC+AGG | + | chr5_4:25344504-25344523 | None:intergenic | 30.0% | |
| CCTGCAATAATGATTATCAT+AGG | - | chr5_4:25344501-25344520 | Msa0845930:intron | 30.0% | |
| TCAGAATGATAAAGCCAAAA+AGG | - | chr5_4:25344569-25344588 | Msa0845930:intron | 30.0% | |
| TCTTCCAAATTTATCAACTG+TGG | + | chr5_4:25344892-25344911 | None:intergenic | 30.0% | |
| ! | AGAAGAACACTTTTCATACA+AGG | - | chr5_4:25344909-25344928 | Msa0845930:CDS | 30.0% |
| ! | ATTGCTATTGCGATTAAGTT+TGG | - | chr5_4:25345072-25345091 | Msa0845930:CDS | 30.0% |
| GAAGATTTGAGCAATGATAA+AGG | + | chr5_4:25345286-25345305 | None:intergenic | 30.0% | |
| !!! | GTTTGTGTTATTGCTGCTTT+TGG | - | chr5_4:25342978-25342997 | Msa0845930:CDS | 35.0% |
| CATATATGTATGTGTGTAGG+TGG | - | chr5_4:25343214-25343233 | Msa0845930:CDS | 35.0% | |
| CTTTCCACATGTCTATGAAA+AGG | - | chr5_4:25343270-25343289 | Msa0845930:CDS | 35.0% | |
| ATTGTTGGTCGTATGTTACT+TGG | - | chr5_4:25343511-25343530 | Msa0845930:CDS | 35.0% | |
| ! | ATGTTACTTGGATTCGGTAT+CGG | - | chr5_4:25343523-25343542 | Msa0845930:CDS | 35.0% |
| !! | CGATAACTTTTGATTGCTAC+TGG | - | chr5_4:25343764-25343783 | Msa0845930:CDS | 35.0% |
| !! | TGTATGTGAATGAGAGTGTT+TGG | - | chr5_4:25343953-25343972 | Msa0845930:CDS | 35.0% |
| !! | GTATGTGAATGAGAGTGTTT+GGG | - | chr5_4:25343954-25343973 | Msa0845930:CDS | 35.0% |
| GGGTGGAGTATAAAAACTTT+CGG | - | chr5_4:25344052-25344071 | Msa0845930:CDS | 35.0% | |
| AGTTTAATCTATCTTAGGGC+GGG | + | chr5_4:25344179-25344198 | None:intergenic | 35.0% | |
| ! | TGTGCCAATTTATGTTTCTG+AGG | - | chr5_4:25344329-25344348 | Msa0845930:intron | 35.0% |
| AGAGCTCCTCTATACTTATA+GGG | + | chr5_4:25344360-25344379 | None:intergenic | 35.0% | |
| AAGAGCTCCTCTATACTTAT+AGG | + | chr5_4:25344361-25344380 | None:intergenic | 35.0% | |
| TTCCAATTGGCAATCACAAT+AGG | - | chr5_4:25344390-25344409 | Msa0845930:intron | 35.0% | |
| AATCACAATAGGCATCTTTG+TGG | - | chr5_4:25344401-25344420 | Msa0845930:intron | 35.0% | |
| AAATGAAAAACGGTGAAGGA+TGG | - | chr5_4:25344451-25344470 | Msa0845930:intron | 35.0% | |
| GATAATCATTATTGCAGGGA+CGG | + | chr5_4:25344499-25344518 | None:intergenic | 35.0% | |
| AAGGAATTGATAAGTATCCG+TGG | - | chr5_4:25344588-25344607 | Msa0845930:intron | 35.0% | |
| TTGAAACTCCTCATCAACAT+CGG | + | chr5_4:25344619-25344638 | None:intergenic | 35.0% | |
| TGATGAGGAGTTTCAAGATT+TGG | - | chr5_4:25344623-25344642 | Msa0845930:intron | 35.0% | |
| AAAAACTGTGGAACATCCTT+GGG | - | chr5_4:25344665-25344684 | Msa0845930:intron | 35.0% | |
| GAATGGAATGAATATTGCCA+TGG | + | chr5_4:25344727-25344746 | None:intergenic | 35.0% | |
| ! | CCAATAGTCTTGAACAAAAC+AGG | + | chr5_4:25344792-25344811 | None:intergenic | 35.0% |
| !! | CCTGTTTTGTTCAAGACTAT+TGG | - | chr5_4:25344789-25344808 | Msa0845930:intron | 35.0% |
| !! | ATCGCCACAGTTGATAAATT+TGG | - | chr5_4:25344885-25344904 | Msa0845930:CDS | 35.0% |
| ! | AGAACACTTTTCATACAAGG+CGG | - | chr5_4:25344912-25344931 | Msa0845930:CDS | 35.0% |
| TCAAGTGGGAATATTTCACT+AGG | + | chr5_4:25345213-25345232 | None:intergenic | 35.0% | |
| ATGCTTTGTCACATGAAGTT+TGG | - | chr5_4:25345312-25345331 | Msa0845930:intron | 35.0% | |
| TGTCATCACAACAACGAAAA+AGG | + | chr5_4:25345355-25345374 | None:intergenic | 35.0% | |
| ACGGTTGACATTTCTTCAAT+TGG | + | chr5_4:25345417-25345436 | None:intergenic | 35.0% | |
| TTGAAGAAATGTCAACCGTA+TGG | - | chr5_4:25345418-25345437 | Msa0845930:CDS | 35.0% | |
| TGAAGAAATGTCAACCGTAT+GGG | - | chr5_4:25345419-25345438 | Msa0845930:CDS | 35.0% | |
| AACTCTTGATCATTGGGTTT+GGG | + | chr5_4:25345483-25345502 | None:intergenic | 35.0% | |
| TAACTCTTGATCATTGGGTT+TGG | + | chr5_4:25345484-25345503 | None:intergenic | 35.0% | |
| AAACCCAATGATCAAGAGTT+AGG | - | chr5_4:25345483-25345502 | Msa0845930:CDS | 35.0% | |
| AACCCAATGATCAAGAGTTA+GGG | - | chr5_4:25345484-25345503 | Msa0845930:CDS | 35.0% | |
| TTCCCTAACTCTTGATCATT+GGG | + | chr5_4:25345489-25345508 | None:intergenic | 35.0% | |
| ATAATCTTTCCCAGACCCAT+TGG | + | chr5_4:25342928-25342947 | None:intergenic | 40.0% | |
| !!! | TGTGTTATTGCTGCTTTTGG+AGG | - | chr5_4:25342981-25343000 | Msa0845930:CDS | 40.0% |
| TGTAGGTGGAGTTACATCTA+TGG | - | chr5_4:25343228-25343247 | Msa0845930:CDS | 40.0% | |
| TCCACATGTCTATGAAAAGG+AGG | - | chr5_4:25343273-25343292 | Msa0845930:CDS | 40.0% | |
| !! | GTTGTCGGATGGTCTTATAT+TGG | + | chr5_4:25343299-25343318 | None:intergenic | 40.0% |
| !! | GAATTTGCAGTACTGGTTGT+CGG | + | chr5_4:25343314-25343333 | None:intergenic | 40.0% |
| TTCTTGAGCAAAGCCATTCA+TGG | + | chr5_4:25343479-25343498 | None:intergenic | 40.0% | |
| ! | ATGGCTTTGCTCAAGAAGTT+TGG | - | chr5_4:25343482-25343501 | Msa0845930:CDS | 40.0% |
| GAAGTTTGGATGCTCATTGT+TGG | - | chr5_4:25343496-25343515 | Msa0845930:CDS | 40.0% | |
| ! | GGTCGTATGTTACTTGGATT+CGG | - | chr5_4:25343517-25343536 | Msa0845930:CDS | 40.0% |
| CGGGAGATACTAAGTTATAG+TGG | + | chr5_4:25344160-25344179 | None:intergenic | 40.0% | |
| ! | GCCAATTTATGTTTCTGAGG+TGG | - | chr5_4:25344332-25344351 | Msa0845930:intron | 40.0% |
| GCCACCTCAGAAACATAAAT+TGG | + | chr5_4:25344336-25344355 | None:intergenic | 40.0% | |
| TGCCTATTGTGATTGCCAAT+TGG | + | chr5_4:25344395-25344414 | None:intergenic | 40.0% | |
| TGAAGGATGGCGTTATAGTT+TGG | - | chr5_4:25344464-25344483 | Msa0845930:intron | 40.0% | |
| GAAGGATGGCGTTATAGTTT+GGG | - | chr5_4:25344465-25344484 | Msa0845930:intron | 40.0% | |
| ! | ATGGCGTTATAGTTTGGGTT+TGG | - | chr5_4:25344470-25344489 | Msa0845930:intron | 40.0% |
| CAAAAACTGTGGAACATCCT+TGG | - | chr5_4:25344664-25344683 | Msa0845930:intron | 40.0% | |
| ATGGTGAGATGAGGTCTATA+CGG | + | chr5_4:25344708-25344727 | None:intergenic | 40.0% | |
| AATATTGCCATGGTGAGATG+AGG | + | chr5_4:25344717-25344736 | None:intergenic | 40.0% | |
| CCAGTGAATTGCTGAAAGAA+TGG | + | chr5_4:25344744-25344763 | None:intergenic | 40.0% | |
| CCATTCTTTCAGCAATTCAC+TGG | - | chr5_4:25344741-25344760 | Msa0845930:intron | 40.0% | |
| ! | GCGATTAAGTTTGGAGTAAG+TGG | - | chr5_4:25345081-25345100 | Msa0845930:CDS | 40.0% |
| ACGACAATTGCATACCACTT+TGG | + | chr5_4:25345123-25345142 | None:intergenic | 40.0% | |
| ! | AAGTTTTTGCCAGAGACGAA+GGG | - | chr5_4:25345387-25345406 | Msa0845930:CDS | 40.0% |
| ATAAGGATGCTTCTCCCATA+CGG | + | chr5_4:25345436-25345455 | None:intergenic | 40.0% | |
| !! | TATGGGAGAAGCATCCTTAT+TGG | - | chr5_4:25345436-25345455 | Msa0845930:CDS | 40.0% |
| CTTCCCTAACTCTTGATCAT+TGG | + | chr5_4:25345490-25345509 | None:intergenic | 40.0% | |
| !! | ACTCTAGGAGTGAGTTTTCC+GGG | + | chr5_4:25342951-25342970 | None:intergenic | 45.0% |
| !! | GACTCTAGGAGTGAGTTTTC+CGG | + | chr5_4:25342952-25342971 | None:intergenic | 45.0% |
| ACACAAACGAAGACGACTCT+AGG | + | chr5_4:25342966-25342985 | None:intergenic | 45.0% | |
| ! | GCCTCCTTTTCATAGACATG+TGG | + | chr5_4:25343277-25343296 | None:intergenic | 45.0% |
| ATTCACGTCCTCTTTGTACG+TGG | - | chr5_4:25343354-25343373 | Msa0845930:intron | 45.0% | |
| ! | CTGCTCTTGTCGCTTCTATT+GGG | - | chr5_4:25343377-25343396 | Msa0845930:intron | 45.0% |
| ! | TGCTCTTGTCGCTTCTATTG+GGG | - | chr5_4:25343378-25343397 | Msa0845930:intron | 45.0% |
| AAGAACACCTCCAGAAAGCA+TGG | + | chr5_4:25343440-25343459 | None:intergenic | 45.0% | |
| !!! | GGAGGTGTTCTTTTTCTTGC+TGG | - | chr5_4:25343448-25343467 | Msa0845930:intron | 45.0% |
| GTGGCTCCCTATAAGTATAG+AGG | - | chr5_4:25344351-25344370 | Msa0845930:intron | 45.0% | |
| ATCAAAGAACTTGGCGTGTC+AGG | + | chr5_4:25344540-25344559 | None:intergenic | 45.0% | |
| CCACGCTCTATCAAAGAACT+TGG | + | chr5_4:25344549-25344568 | None:intergenic | 45.0% | |
| CCAAGTTCTTTGATAGAGCG+TGG | - | chr5_4:25344546-25344565 | Msa0845930:intron | 45.0% | |
| ! | CATCAACATCGGTTGTTCCA+CGG | + | chr5_4:25344608-25344627 | None:intergenic | 45.0% |
| TGGAACAACCGATGTTGATG+AGG | - | chr5_4:25344608-25344627 | Msa0845930:intron | 45.0% | |
| ATACGGTCTCGTCAACAAAG+AGG | + | chr5_4:25344691-25344710 | None:intergenic | 45.0% | |
| GTATAGACCTCATCTCACCA+TGG | - | chr5_4:25344707-25344726 | Msa0845930:intron | 45.0% | |
| CTCATGTCAGCCTTGATTAC+CGG | - | chr5_4:25344831-25344850 | Msa0845930:intron | 45.0% | |
| GTTACATCCTCCGGTAATCA+AGG | + | chr5_4:25344844-25344863 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAAGTGGTGATCC+AGG | - | chr5_4:25345090-25345109 | Msa0845930:CDS | 45.0% |
| ! | ATCCAGGTGTTTTGCCAAAG+TGG | - | chr5_4:25345106-25345125 | Msa0845930:CDS | 45.0% |
| TACCACTTTGGCAAAACACC+TGG | + | chr5_4:25345111-25345130 | None:intergenic | 45.0% | |
| TGCATTTGTGTGTACGTAGC+AGG | - | chr5_4:25345150-25345169 | Msa0845930:CDS | 45.0% | |
| TGTACGTAGCAGGATTTGCA+TGG | - | chr5_4:25345160-25345179 | Msa0845930:CDS | 45.0% | |
| TAGCAGGATTTGCATGGTCT+TGG | - | chr5_4:25345166-25345185 | Msa0845930:CDS | 45.0% | |
| AGCAGGATTTGCATGGTCTT+GGG | - | chr5_4:25345167-25345186 | Msa0845930:intron | 45.0% | |
| ! | CAAGTTTTTGCCAGAGACGA+AGG | - | chr5_4:25345386-25345405 | Msa0845930:CDS | 45.0% |
| !!! | TAATTATATTTTGATTATTT+TGG | - | chr5_4:25344031-25344050 | Msa0845930:CDS | 5.0% |
| !!! | AATTATATTTTGATTATTTT+GGG | - | chr5_4:25344032-25344051 | Msa0845930:CDS | 5.0% |
| GGGTCTGGGAAAGATTATCC+CGG | - | chr5_4:25342930-25342949 | Msa0845930:CDS | 50.0% | |
| GGCTATGATCTTGGCATCTC+AGG | - | chr5_4:25343014-25343033 | Msa0845930:CDS | 50.0% | |
| !! | TTGCAGTACTGGTTGTCGGA+TGG | + | chr5_4:25343310-25343329 | None:intergenic | 50.0% |
| GGCTGTCGAATTTGCAGTAC+TGG | + | chr5_4:25343321-25343340 | None:intergenic | 50.0% | |
| AAGAGCAGCCACGTACAAAG+AGG | + | chr5_4:25343365-25343384 | None:intergenic | 50.0% | |
| ! | GCTGCTCTTGTCGCTTCTAT+TGG | - | chr5_4:25343376-25343395 | Msa0845930:intron | 50.0% |
| AGGCGTATCACCATGCTTTC+TGG | - | chr5_4:25343427-25343446 | Msa0845930:intron | 50.0% | |
| CGTATCACCATGCTTTCTGG+AGG | - | chr5_4:25343430-25343449 | Msa0845930:intron | 50.0% | |
| ! | CGGTATCGGATGTGCTAATC+AGG | - | chr5_4:25343537-25343556 | Msa0845930:CDS | 50.0% |
| ATGTCAGCCTTGATTACCGG+AGG | - | chr5_4:25344834-25344853 | Msa0845930:intron | 50.0% | |
| TGTGGCGATTGAAACGAGAG+TGG | + | chr5_4:25344874-25344893 | None:intergenic | 50.0% | |
| ! | GCAGGATTTGCATGGTCTTG+GGG | - | chr5_4:25345168-25345187 | Msa0845930:intron | 50.0% |
| CTAGGAACCAACCAACCAAG+AGG | + | chr5_4:25345195-25345214 | None:intergenic | 50.0% | |
| CTGCAGAGCGAACTTCAAGT+GGG | + | chr5_4:25345227-25345246 | None:intergenic | 50.0% | |
| ATTGGAACTCCCTTCGTCTC+TGG | + | chr5_4:25345399-25345418 | None:intergenic | 50.0% | |
| GTGGTACCATCGGCACCAAT+GGG | - | chr5_4:25342910-25342929 | Msa0845930:CDS | 55.0% | |
| TCGTGGCTAACTCGAGTGCT+TGG | - | chr5_4:25343403-25343422 | Msa0845930:intron | 55.0% | |
| GGCTAACTCGAGTGCTTGGA+AGG | - | chr5_4:25343407-25343426 | Msa0845930:intron | 55.0% | |
| !! | CTTGCTGGTGCTGCCATGAA+TGG | - | chr5_4:25343463-25343482 | Msa0845930:CDS | 55.0% |
| CTCGTCAACAAAGAGGCCCA+AGG | + | chr5_4:25344684-25344703 | None:intergenic | 55.0% | |
| TTGGGGTCCTCTTGGTTGGT+TGG | - | chr5_4:25345185-25345204 | Msa0845930:intron | 55.0% | |
| GCTGCAGAGCGAACTTCAAG+TGG | + | chr5_4:25345228-25345247 | None:intergenic | 55.0% | |
| GGTGGTACCATCGGCACCAA+TGG | - | chr5_4:25342909-25342928 | Msa0845930:CDS | 60.0% | |
| ACCATCGGCACCAATGGGTC+TGG | - | chr5_4:25342915-25342934 | Msa0845930:CDS | 60.0% | |
| CCATCGGCACCAATGGGTCT+GGG | - | chr5_4:25342916-25342935 | Msa0845930:CDS | 60.0% | |
| !! | TCGCTTCTATTGGGGCGTCG+TGG | - | chr5_4:25343386-25343405 | Msa0845930:intron | 60.0% |
| GGCGAGTGCGTTACATCCTC+CGG | + | chr5_4:25344853-25344872 | None:intergenic | 60.0% | |
| ! | GCATGGTCTTGGGGTCCTCT+TGG | - | chr5_4:25345177-25345196 | Msa0845930:intron | 60.0% |
| GGTCTTGGGGTCCTCTTGGT+TGG | - | chr5_4:25345181-25345200 | Msa0845930:intron | 60.0% | |
| !! | CCCAGACCCATTGGTGCCGA+TGG | + | chr5_4:25342919-25342938 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 25342903 | 25345515 | 25342903 | ID=Msa0845930;Name=Msa0845930 |
| chr5_4 | mRNA | 25342903 | 25345515 | 25342903 | ID=Msa0845930-mRNA-1;Parent=Msa0845930;Name=Msa0845930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|514 |
| chr5_4 | exon | 25345383 | 25345515 | 25345383 | ID=Msa0845930-mRNA-1:exon:10091;Parent=Msa0845930-mRNA-1 |
| chr5_4 | exon | 25344860 | 25345185 | 25344860 | ID=Msa0845930-mRNA-1:exon:10090;Parent=Msa0845930-mRNA-1 |
| chr5_4 | exon | 25343462 | 25344091 | 25343462 | ID=Msa0845930-mRNA-1:exon:10089;Parent=Msa0845930-mRNA-1 |
| chr5_4 | exon | 25342903 | 25343358 | 25342903 | ID=Msa0845930-mRNA-1:exon:10088;Parent=Msa0845930-mRNA-1 |
| chr5_4 | CDS | 25345383 | 25345515 | 25345383 | ID=Msa0845930-mRNA-1:cds;Parent=Msa0845930-mRNA-1 |
| chr5_4 | CDS | 25344860 | 25345185 | 25344860 | ID=Msa0845930-mRNA-1:cds;Parent=Msa0845930-mRNA-1 |
| chr5_4 | CDS | 25343462 | 25344091 | 25343462 | ID=Msa0845930-mRNA-1:cds;Parent=Msa0845930-mRNA-1 |
| chr5_4 | CDS | 25342903 | 25343358 | 25342903 | ID=Msa0845930-mRNA-1:cds;Parent=Msa0845930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
