AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121460 MtrunA17_Chr1g0180531 90.909 242 9 3 1 235 1 236 5.45e-158 437
Msa0121460 MtrunA17_Chr6g0463871 93.750 48 3 0 134 181 1 48 8.80e-29 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121460 AT2G36895.2 59.671 243 78 4 1 235 1 231 6.47e-97 283
Msa0121460 AT2G36895.1 59.426 244 78 5 1 235 1 232 3.87e-95 278
Msa0121460 AT2G36895.3 53.506 271 78 6 1 235 1 259 6.38e-89 263

Find 80 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGGAATGGGTTGCTTT+GGG 0.185061 1_3:+47278473 None:intergenic
CTCTTTCCAGGGACTTGATA+TGG 0.214254 1_3:-47276958 Msa0121460:intron
TAATTCATGAATGATTAATT+TGG 0.227552 1_3:+47278739 None:intergenic
TGAGAGGAAGAAGGAGAAAC+AGG 0.234444 1_3:+47278518 None:intergenic
ACTTTCTGTAGATATATTCT+AGG 0.300646 1_3:-47273907 Msa0121460:exon
GTTTGAGGAATGGGTTGCTT+TGG 0.314802 1_3:+47278472 None:intergenic
CTGTTGCAGTACCATTACTA+TGG 0.322047 1_3:-47274012 Msa0121460:CDS
AAGAGAATCTGAATCTGAAT+AGG 0.338244 1_3:+47278624 None:intergenic
CCACAATAAATTGTTGGTTC+TGG 0.338888 1_3:-47273741 Msa0121460:three_prime_UTR
ATCTCTTTCGCTTTCTTCAA+TGG 0.341732 1_3:-47278660 Msa0121460:exon
GAACCATGTTGCCTCCGATT+TGG 0.352718 1_3:+47277775 None:intergenic
CCTGGTGTTAAATTTCCATT+TGG 0.375756 1_3:-47273664 Msa0121460:three_prime_UTR
GATTTCTCACAGAAATTCAA+TGG 0.385224 1_3:-47277842 Msa0121460:intron
ATCCAATTGTCCATTCTATC+TGG 0.389015 1_3:-47273764 Msa0121460:three_prime_UTR
TCTTTCCAGGGACTTGATAT+GGG 0.411462 1_3:-47276957 Msa0121460:intron
TTTATTGTGGCCAGATAGAA+TGG 0.413219 1_3:+47273754 None:intergenic
ACCTAGACAAAGGCCTTGAT+TGG 0.415493 1_3:+47277078 None:intergenic
AGAAATTCAATGGGTTTCTC+AGG 0.422443 1_3:-47277832 Msa0121460:CDS
ATCTGGCCACAATAAATTGT+TGG 0.424160 1_3:-47273747 Msa0121460:three_prime_UTR
CGTTGCTGTTGTTTGAGGAA+TGG 0.425269 1_3:+47278462 None:intergenic
GAGAAAGGAGGTTTGGAAGA+AGG 0.434001 1_3:+47278572 None:intergenic
TGAGGAATGGGTTGCTTTGG+GGG 0.441244 1_3:+47278475 None:intergenic
TATACAGAGTGCACAAAGAA+TGG 0.442953 1_3:+47273876 None:intergenic
CCTTGGTCCGACGATGATAA+CGG 0.451977 1_3:-47278422 Msa0121460:intron
GTTGCTGTTGTTTGAGGAAT+GGG 0.451994 1_3:+47278463 None:intergenic
GGAATCGTTGCTGTTGTTTG+AGG 0.455292 1_3:+47278457 None:intergenic
TTGAGGAATGGGTTGCTTTG+GGG 0.456557 1_3:+47278474 None:intergenic
TTGTTGTTGTTGAATGAGAA+AGG 0.459619 1_3:+47278557 None:intergenic
AGAGAATCTGAATCTGAATA+GGG 0.461673 1_3:+47278625 None:intergenic
GTTGAATGAGAAAGGAGGTT+TGG 0.465955 1_3:+47278565 None:intergenic
TGGAGGAGGAATTGTAGAGA+AGG 0.473722 1_3:-47273945 Msa0121460:CDS
GGCCAGATAGAATGGACAAT+TGG 0.475499 1_3:+47273762 None:intergenic
AGGCGAAGTGTCTCAGAAGC+TGG 0.476255 1_3:+47273980 None:intergenic
TTTGGAAGAAGGAGAAATGA+TGG 0.483082 1_3:+47278583 None:intergenic
GAATTGTAGAGAAGGTCTAT+TGG 0.491347 1_3:-47273937 Msa0121460:CDS
AGACGAGGATGAGAGGAAGA+AGG 0.497788 1_3:+47278509 None:intergenic
ATTTCTCACAGAAATTCAAT+GGG 0.502089 1_3:-47277841 Msa0121460:intron
CAGTCCGTCAGTGGTGAAGA+AGG 0.505748 1_3:+47277800 None:intergenic
ATTCCTTTGAGTTCTTCCCT+TGG 0.515549 1_3:-47278439 Msa0121460:CDS
TTTACCTTCTTCACCACTGA+CGG 0.518009 1_3:-47277804 Msa0121460:CDS
CCTAGACAAAGGCCTTGATT+GGG 0.524442 1_3:+47277079 None:intergenic
AACTACATGGATCCCAATCA+AGG 0.527063 1_3:-47277091 Msa0121460:CDS
TGTTGCAGTACCATTACTAT+GGG 0.529593 1_3:-47274011 Msa0121460:CDS
CGTTATCATCGTCGGACCAA+GGG 0.543998 1_3:+47278423 None:intergenic
ACTGACGGACTGATCCAAAT+CGG 0.552411 1_3:-47277789 Msa0121460:CDS
GAGAGGAAGAAGGAGAAACA+GGG 0.553589 1_3:+47278519 None:intergenic
CCGTTATCATCGTCGGACCA+AGG 0.555351 1_3:+47278422 None:intergenic
CGCCTAGCTGTTAAAAGTGG+AGG 0.555989 1_3:-47273962 Msa0121460:CDS
CCCAATCAAGGCCTTTGTCT+AGG 0.561143 1_3:-47277079 Msa0121460:CDS
CCAAATGGAAATTTAACACC+AGG 0.562686 1_3:+47273664 None:intergenic
ACAGGTGATTGCCGCAGAGA+AGG 0.564927 1_3:-47274071 Msa0121460:intron
CTCATGTTTCACAGAAGCAA+GGG 0.567711 1_3:-47277156 Msa0121460:intron
GTATCAAGAGAGCAACTACA+TGG 0.569947 1_3:-47277104 Msa0121460:CDS
CTAGCTGTTAAAAGTGGAGG+AGG 0.572051 1_3:-47273959 Msa0121460:CDS
CTTCGCCTAGCTGTTAAAAG+TGG 0.572780 1_3:-47273965 Msa0121460:CDS
ACGAAGAAGACGAGGATGAG+AGG 0.572903 1_3:+47278502 None:intergenic
TCTCATGTTTCACAGAAGCA+AGG 0.584656 1_3:-47277157 Msa0121460:intron
ATGATGGAATTGTTGAATGG+TGG 0.588369 1_3:+47278599 None:intergenic
AATATATGATATATCTGCCC+TGG 0.593288 1_3:-47273682 Msa0121460:three_prime_UTR
TCAGAAGACTTGACGCGACG+AGG 0.594267 1_3:+47277753 None:intergenic
GGAGGAACGCCCCATAGTAA+TGG 0.596217 1_3:+47274001 None:intergenic
TAATGGTACTGCAACAGTCA+TGG 0.597221 1_3:+47274018 None:intergenic
GAAATGATGGAATTGTTGAA+TGG 0.598643 1_3:+47278596 None:intergenic
GCCGCAGAGAAGGCAAGCAG+AGG 0.602339 1_3:-47274061 Msa0121460:CDS
GATCCAAATCGGAGGCAACA+TGG 0.621305 1_3:-47277778 Msa0121460:CDS
GAGCGAACCGTTATCATCGT+CGG 0.621641 1_3:+47278415 None:intergenic
GAATTACTTATATATACGTG+TGG 0.626562 1_3:-47278722 Msa0121460:five_prime_UTR
CCAGAACCAACAATTTATTG+TGG 0.629526 1_3:+47273741 None:intergenic
CAAAGAGTGCACCTAGACAA+AGG 0.629542 1_3:+47277068 None:intergenic
GGACCAAGGGAAGAACTCAA+AGG 0.642761 1_3:+47278436 None:intergenic
GATTGAGATGCTTAGTGATG+TGG 0.643100 1_3:-47276901 Msa0121460:CDS
GATTTGGATCAGTCCGTCAG+TGG 0.643323 1_3:+47277791 None:intergenic
CACTAAGCATCTCAATCGAG+CGG 0.647776 1_3:+47276907 None:intergenic
GGGGAGAAACGAAGAAGACG+AGG 0.670848 1_3:+47278494 None:intergenic
CGAAGTGTCTCAGAAGCTGG+AGG 0.672033 1_3:+47273983 None:intergenic
GACGGACTGATCCAAATCGG+AGG 0.686153 1_3:-47277786 Msa0121460:CDS
TTGTTGTTGAATGAGAAAGG+AGG 0.689671 1_3:+47278560 None:intergenic
ACCTCTGCTTGCCTTCTCTG+CGG 0.691246 1_3:+47274060 None:intergenic
CAAATGGAAATTTAACACCA+GGG 0.691425 1_3:+47273665 None:intergenic
GTTGCAGTACCATTACTATG+GGG 0.768312 1_3:-47274010 Msa0121460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTAAGTAAAGATTTT+GGG + chr1_3:47274777-47274796 None:intergenic 10.0%
!!! TTTATTTTAAGTAAAGATTT+TGG + chr1_3:47274778-47274797 None:intergenic 10.0%
!! AATCTTTACTTAAAATAAAA+TGG - chr1_3:47274779-47274798 Msa0121460:intron 10.0%
!! CCAAAAAAAAAAAAAAAATT+AGG + chr1_3:47276501-47276520 None:intergenic 10.0%
!!! CCTAATTTTTTTTTTTTTTT+TGG - chr1_3:47276498-47276517 Msa0121460:intron 10.0%
!!! ACTGTTTTTTTTTTTTTTTA+CGG - chr1_3:47276768-47276787 Msa0121460:intron 10.0%
!! TAATTCATGAATGATTAATT+TGG + chr1_3:47273673-47273692 None:intergenic 15.0%
!!! TGCTTTTATAATTTAAAGAA+TGG - chr1_3:47274385-47274404 Msa0121460:intron 15.0%
!! TTTCTTCAATTAAATACAAA+AGG + chr1_3:47274874-47274893 None:intergenic 15.0%
!!! TAAATTTCAACATATGTTTT+GGG + chr1_3:47274908-47274927 None:intergenic 15.0%
!!! ATAAATTTCAACATATGTTT+TGG + chr1_3:47274909-47274928 None:intergenic 15.0%
!!! AAATGTAAATTTTTGTCTTA+TGG - chr1_3:47276209-47276228 Msa0121460:intron 15.0%
!!! AATGTAAATTTTTGTCTTAT+GGG - chr1_3:47276210-47276229 Msa0121460:intron 15.0%
!!! TTGTTTTTTAATTTTGAAAC+TGG + chr1_3:47276690-47276709 None:intergenic 15.0%
!! TTCAAAATTAAAAAACAAGT+TGG - chr1_3:47276692-47276711 Msa0121460:intron 15.0%
!! AAAAAAAAAAAACAGTGATA+GGG + chr1_3:47276764-47276783 None:intergenic 15.0%
!! AAAAAAAAAAAAACAGTGAT+AGG + chr1_3:47276765-47276784 None:intergenic 15.0%
!! AATGTGAAAAATTTGAGAAA+TGG + chr1_3:47273719-47273738 None:intergenic 20.0%
!!! TCAGATAAAATCATTTTAAC+TGG + chr1_3:47274429-47274448 None:intergenic 20.0%
!! ATGTTGAAATTTATCTTTGT+TGG - chr1_3:47274915-47274934 Msa0121460:intron 20.0%
!! ATAAAAACTTAAGCTGTTAT+TGG - chr1_3:47274991-47275010 Msa0121460:intron 20.0%
!!! AATGGATTTAAACAATAAGA+TGG + chr1_3:47275195-47275214 None:intergenic 20.0%
!!! TTCTTTTAACGATAAAACAA+TGG - chr1_3:47275587-47275606 Msa0121460:intron 20.0%
!!! TTTTAATGAAACCTGTATTT+TGG - chr1_3:47275710-47275729 Msa0121460:intron 20.0%
!!! TTTAATGAAACCTGTATTTT+GGG - chr1_3:47275711-47275730 Msa0121460:intron 20.0%
!!! TACAAAATCACTAACATTTT+AGG - chr1_3:47276094-47276113 Msa0121460:intron 20.0%
!! AATTTACATTTCAGCAAATT+CGG + chr1_3:47276200-47276219 None:intergenic 20.0%
!! ATAGAGTATAGCATAAAATT+TGG - chr1_3:47276399-47276418 Msa0121460:intron 20.0%
!!! AGTTTTGTAACTGTTAATTT+GGG + chr1_3:47276659-47276678 None:intergenic 20.0%
!! TTGAGATTCATTAATAAGAT+CGG + chr1_3:47277144-47277163 None:intergenic 20.0%
!! AACTACTTTCACAAAAAAAA+AGG + chr1_3:47277567-47277586 None:intergenic 20.0%
!! TTAGATTTATGGATACAATT+TGG + chr1_3:47277597-47277616 None:intergenic 20.0%
!! ATAATTCAAATTCCTGTAAT+GGG + chr1_3:47277987-47278006 None:intergenic 20.0%
!! AAGATTAAGATAATTAGCTA+GGG + chr1_3:47278067-47278086 None:intergenic 20.0%
!! TAAGATTAAGATAATTAGCT+AGG + chr1_3:47278068-47278087 None:intergenic 20.0%
!!! CCATATAAAATTAGTTCTAA+TGG + chr1_3:47278315-47278334 None:intergenic 20.0%
!!! CCATTAGAACTAATTTTATA+TGG - chr1_3:47278312-47278331 Msa0121460:intron 20.0%
! GAATTACTTATATATACGTG+TGG - chr1_3:47273687-47273706 Msa0121460:three_prime_UTR 25.0%
! TAATCTTTGAATTTAACGTG+TGG + chr1_3:47274079-47274098 None:intergenic 25.0%
! ACACGTTAAATTCAAAGATT+AGG - chr1_3:47274078-47274097 Msa0121460:intron 25.0%
! CACGTTAAATTCAAAGATTA+GGG - chr1_3:47274079-47274098 Msa0121460:intron 25.0%
!!! ATTAATTTGCATGTATAGTG+TGG - chr1_3:47274150-47274169 Msa0121460:intron 25.0%
!! TTATCTGAAAGTCTGAATTT+TGG - chr1_3:47274441-47274460 Msa0121460:intron 25.0%
!! TATCTGAAAGTCTGAATTTT+GGG - chr1_3:47274442-47274461 Msa0121460:intron 25.0%
!! AGATTTATTTGCGTTTTTCA+TGG - chr1_3:47274492-47274511 Msa0121460:intron 25.0%
! ATTTCTCACAGAAATTCAAT+GGG - chr1_3:47274568-47274587 Msa0121460:intron 25.0%
! AATTAAATACAAAAGGAGCT+TGG + chr1_3:47274867-47274886 None:intergenic 25.0%
! AAATTTATCTTTGTTGGATG+AGG - chr1_3:47274921-47274940 Msa0121460:intron 25.0%
! AATTTATCTTTGTTGGATGA+GGG - chr1_3:47274922-47274941 Msa0121460:intron 25.0%
!! AATTATGTACTCGTTCTTTT+TGG - chr1_3:47275029-47275048 Msa0121460:intron 25.0%
!!! TTCTTTTAGATTAGCTAAGT+AGG - chr1_3:47275228-47275247 Msa0121460:intron 25.0%
!!! CTGATATTTTTTAGCAGTTT+GGG + chr1_3:47275283-47275302 None:intergenic 25.0%
! AAACTGCTAAAAAATATCAG+CGG - chr1_3:47275283-47275302 Msa0121460:intron 25.0%
! AAATGGGATAGTTTATTTAG+TGG + chr1_3:47275669-47275688 None:intergenic 25.0%
!!! GAACAGATAAATAGTTCTAA+TGG + chr1_3:47275854-47275873 None:intergenic 25.0%
! AAACATAATGAGATTGTGAA+AGG + chr1_3:47275971-47275990 None:intergenic 25.0%
! GTCTATAGGTTATGATAAAT+TGG + chr1_3:47276011-47276030 None:intergenic 25.0%
!!! GTTCTAGTTTTGTTTTATGA+GGG + chr1_3:47276033-47276052 None:intergenic 25.0%
!!! TGTTCTAGTTTTGTTTTATG+AGG + chr1_3:47276034-47276053 None:intergenic 25.0%
! AGCCTAAAATAATATGTTCT+AGG - chr1_3:47276534-47276553 Msa0121460:intron 25.0%
!! GACCTAGAACATATTATTTT+AGG + chr1_3:47276539-47276558 None:intergenic 25.0%
!!! CAGTTTTGTAACTGTTAATT+TGG + chr1_3:47276660-47276679 None:intergenic 25.0%
!!! TTTTAATTTTGAAACTGGAC+CGG + chr1_3:47276685-47276704 None:intergenic 25.0%
!!! AATTTTGATTTTCTGGAAAC+TGG - chr1_3:47277234-47277253 Msa0121460:intron 25.0%
! TAGGAAAAAAAGAACATAGA+TGG - chr1_3:47277389-47277408 Msa0121460:intron 25.0%
! TTGTATCCATAAATCTAATG+TGG - chr1_3:47277599-47277618 Msa0121460:intron 25.0%
! TAAAGGTAAATCTAATGATC+TGG + chr1_3:47277772-47277791 None:intergenic 25.0%
! TAGATTTACCTTTAGATCTT+TGG - chr1_3:47277778-47277797 Msa0121460:CDS 25.0%
! TTTGTTGGAACAACAAATTA+AGG + chr1_3:47277871-47277890 None:intergenic 25.0%
! AGTTCAATTTCCAATTGTTT+AGG - chr1_3:47277933-47277952 Msa0121460:intron 25.0%
! TTAACAAGATCCTAAACAAT+TGG + chr1_3:47277946-47277965 None:intergenic 25.0%
! TAATTCAAATTCCTGTAATG+GGG + chr1_3:47277986-47278005 None:intergenic 25.0%
! CATAATTCAAATTCCTGTAA+TGG + chr1_3:47277988-47278007 None:intergenic 25.0%
! TCTTAATATTAACAAGTAGC+TGG - chr1_3:47278083-47278102 Msa0121460:intron 25.0%
! ATAACATGTTTGAAAAATCC+TGG - chr1_3:47278120-47278139 Msa0121460:intron 25.0%
! ACTTATTAGCAGCTATTAAA+AGG - chr1_3:47278164-47278183 Msa0121460:intron 25.0%
! ACTTTCTGTAGATATATTCT+AGG - chr1_3:47278502-47278521 Msa0121460:CDS 25.0%
AGAGAATCTGAATCTGAATA+GGG + chr1_3:47273787-47273806 None:intergenic 30.0%
AAGAGAATCTGAATCTGAAT+AGG + chr1_3:47273788-47273807 None:intergenic 30.0%
! GAAATGATGGAATTGTTGAA+TGG + chr1_3:47273816-47273835 None:intergenic 30.0%
! TTGTTGTTGTTGAATGAGAA+AGG + chr1_3:47273855-47273874 None:intergenic 30.0%
! ATCTGAAAGTCTGAATTTTG+GGG - chr1_3:47274443-47274462 Msa0121460:intron 30.0%
GATTTCTCACAGAAATTCAA+TGG - chr1_3:47274567-47274586 Msa0121460:intron 30.0%
AGCTGTTATTGGCAATTATA+AGG - chr1_3:47275002-47275021 Msa0121460:intron 30.0%
!! GTTCTTTTTGGTATATTGCT+TGG - chr1_3:47275041-47275060 Msa0121460:intron 30.0%
AAGAATCTCTGACATTGAAA+TGG + chr1_3:47275213-47275232 None:intergenic 30.0%
!!! GCTGATATTTTTTAGCAGTT+TGG + chr1_3:47275284-47275303 None:intergenic 30.0%
GGATGTTTAATCAACAGAAT+AGG + chr1_3:47275391-47275410 None:intergenic 30.0%
TGCATCTCAATCTATCAAAT+GGG + chr1_3:47275685-47275704 None:intergenic 30.0%
!!! AAACCTGTATTTTGGGTTAA+CGG - chr1_3:47275718-47275737 Msa0121460:intron 30.0%
AGAACATCAATTACCATATG+TGG + chr1_3:47275796-47275815 None:intergenic 30.0%
TTAAACAAACTCTGATCCTT+TGG - chr1_3:47275935-47275954 Msa0121460:intron 30.0%
TAAACAAACTCTGATCCTTT+GGG - chr1_3:47275936-47275955 Msa0121460:intron 30.0%
AGGTTATGATAAATTGGATG+AGG + chr1_3:47276005-47276024 None:intergenic 30.0%
!!! TTTGTTTTATGAGGGTCTAT+AGG + chr1_3:47276025-47276044 None:intergenic 30.0%
GTTGGGTTTATATCATCAAT+TGG - chr1_3:47276295-47276314 Msa0121460:intron 30.0%
TATATCATCAATTGGAGATG+TGG - chr1_3:47276303-47276322 Msa0121460:intron 30.0%
GAGTATAGCATAAAATTTGG+TGG - chr1_3:47276402-47276421 Msa0121460:intron 30.0%
!! TGGTATTGTTTTTCTAGTGA+TGG - chr1_3:47276422-47276441 Msa0121460:intron 30.0%
! TTTCTAGTGATGGAAAAATG+TGG - chr1_3:47276432-47276451 Msa0121460:intron 30.0%
!! AAAACATTTTAGTCACAGCT+AGG - chr1_3:47276570-47276589 Msa0121460:intron 30.0%
!! AAACATTTTAGTCACAGCTA+GGG - chr1_3:47276571-47276590 Msa0121460:intron 30.0%
!!! ACTGTTAATTTGGGCTTTTT+TGG + chr1_3:47276650-47276669 None:intergenic 30.0%
!!! TTTAATTTTGAAACTGGACC+GGG + chr1_3:47276684-47276703 None:intergenic 30.0%
GAAGAAGAAGAAGAAAAAGA+TGG + chr1_3:47277053-47277072 None:intergenic 30.0%
TGAATCTCAACTTCTAATTG+TGG - chr1_3:47277154-47277173 Msa0121460:intron 30.0%
TGGATTTATAACAACACATG+AGG - chr1_3:47277254-47277273 Msa0121460:intron 30.0%
GGATTTATAACAACACATGA+GGG - chr1_3:47277255-47277274 Msa0121460:intron 30.0%
! CCAGTTCAAAGTATTAAAAC+CGG - chr1_3:47277462-47277481 Msa0121460:intron 30.0%
ACTGAACCACATTAGATTTA+TGG + chr1_3:47277608-47277627 None:intergenic 30.0%
AAATCTAATGTGGTTCAGTT+TGG - chr1_3:47277609-47277628 Msa0121460:intron 30.0%
TGATGCTACACAAAACAATT+AGG - chr1_3:47277725-47277744 Msa0121460:intron 30.0%
GATGCTACACAAAACAATTA+GGG - chr1_3:47277726-47277745 Msa0121460:intron 30.0%
ATTTACCTTTAGATCTTTGG+AGG - chr1_3:47277781-47277800 Msa0121460:CDS 30.0%
TTTACCTTTAGATCTTTGGA+GGG - chr1_3:47277782-47277801 Msa0121460:CDS 30.0%
AGATGTAAGTTTAACATGCT+AGG + chr1_3:47277894-47277913 None:intergenic 30.0%
GATAATTAGCTAGGGAAAAT+AGG + chr1_3:47278059-47278078 None:intergenic 30.0%
! ACTAATTTTATATGGCACAC+AGG - chr1_3:47278320-47278339 Msa0121460:intron 30.0%
AATATATGATATATCTGCCC+TGG - chr1_3:47278727-47278746 Msa0121460:five_prime_UTR 30.0%
CAAATGGAAATTTAACACCA+GGG + chr1_3:47278747-47278766 None:intergenic 30.0%
ATCTCTTTCGCTTTCTTCAA+TGG - chr1_3:47273749-47273768 Msa0121460:three_prime_UTR 35.0%
! ATGATGGAATTGTTGAATGG+TGG + chr1_3:47273813-47273832 None:intergenic 35.0%
TTTGGAAGAAGGAGAAATGA+TGG + chr1_3:47273829-47273848 None:intergenic 35.0%
! TTGTTGTTGAATGAGAAAGG+AGG + chr1_3:47273852-47273871 None:intergenic 35.0%
TTGTTGCAAAAAACTGCTTG+AGG - chr1_3:47274337-47274356 Msa0121460:intron 35.0%
!! GAATTTTGGGGAAATTGTGT+TGG - chr1_3:47274455-47274474 Msa0121460:intron 35.0%
! AGAAATTCAATGGGTTTCTC+AGG - chr1_3:47274577-47274596 Msa0121460:intron 35.0%
ACTGTTGCAATGTAGCAAAA+AGG + chr1_3:47274730-47274749 None:intergenic 35.0%
! TGCAACAGTTATCTTTTGTC+AGG - chr1_3:47274741-47274760 Msa0121460:intron 35.0%
ACAATAAAAATCTCAGCAGC+TGG + chr1_3:47274812-47274831 None:intergenic 35.0%
GTGTTCTACATGAAAGACAA+GGG + chr1_3:47275086-47275105 None:intergenic 35.0%
AGTGTTCTACATGAAAGACA+AGG + chr1_3:47275087-47275106 None:intergenic 35.0%
TGTCTTTCATGTAGAACACT+TGG - chr1_3:47275087-47275106 Msa0121460:intron 35.0%
CAGCAAACGATAACTCATAA+AGG + chr1_3:47275412-47275431 None:intergenic 35.0%
AATTTGAATGTCCTCTTTCC+AGG - chr1_3:47275439-47275458 Msa0121460:intron 35.0%
ATTTGAATGTCCTCTTTCCA+GGG - chr1_3:47275440-47275459 Msa0121460:intron 35.0%
TGGGATAGTTTATTTAGTGG+TGG + chr1_3:47275666-47275685 None:intergenic 35.0%
GTGCATCTCAATCTATCAAA+TGG + chr1_3:47275686-47275705 None:intergenic 35.0%
!!! AACCTGTATTTTGGGTTAAC+GGG - chr1_3:47275719-47275738 Msa0121460:intron 35.0%
CTTGTTAATTAGGCCACATA+TGG - chr1_3:47275780-47275799 Msa0121460:intron 35.0%
ACTTTCGAACTCATACAATG+AGG - chr1_3:47276054-47276073 Msa0121460:intron 35.0%
!! GATTTTGTAGAGAAGTGCAA+GGG + chr1_3:47276083-47276102 None:intergenic 35.0%
!! TGATTTTGTAGAGAAGTGCA+AGG + chr1_3:47276084-47276103 None:intergenic 35.0%
TGGGGAATGATATAGGATTA+CGG + chr1_3:47276128-47276147 None:intergenic 35.0%
AAGAGGAATTGAAACCAGAT+GGG + chr1_3:47276147-47276166 None:intergenic 35.0%
AAAGAGGAATTGAAACCAGA+TGG + chr1_3:47276148-47276167 None:intergenic 35.0%
! TTCCTCTTTTGCTGAATTAC+TGG - chr1_3:47276159-47276178 Msa0121460:intron 35.0%
! TCCTCTTTTGCTGAATTACT+GGG - chr1_3:47276160-47276179 Msa0121460:intron 35.0%
! CTTATGGGATTGTGCATTTT+TGG - chr1_3:47276225-47276244 Msa0121460:intron 35.0%
!!! ATTGTGCATTTTTGGTTCAG+TGG - chr1_3:47276233-47276252 Msa0121460:intron 35.0%
!! AACATTTTAGTCACAGCTAG+GGG - chr1_3:47276572-47276591 Msa0121460:intron 35.0%
!!! GCTTTTTTGGATCAGTTAAC+TGG + chr1_3:47276637-47276656 None:intergenic 35.0%
TAACAGTTACAAAACTGACC+CGG - chr1_3:47276663-47276682 Msa0121460:intron 35.0%
TCAGTGAAATGACAGTGATA+GGG + chr1_3:47276801-47276820 None:intergenic 35.0%
ATCAGTGAAATGACAGTGAT+AGG + chr1_3:47276802-47276821 None:intergenic 35.0%
TCTCTACCATCCAACTTAAT+CGG - chr1_3:47276968-47276987 Msa0121460:intron 35.0%
GAAGAAAAAGATGGACACTT+GGG + chr1_3:47277044-47277063 None:intergenic 35.0%
AGAAGAAAAAGATGGACACT+TGG + chr1_3:47277045-47277064 None:intergenic 35.0%
AAATCAACAGCAAAACCGAA+TGG + chr1_3:47277100-47277119 None:intergenic 35.0%
!!! GTGCGGTAATTTTGATTTTC+TGG - chr1_3:47277227-47277246 Msa0121460:intron 35.0%
!! CTGATTCAGTTTTGTACGTT+AGG - chr1_3:47277413-47277432 Msa0121460:intron 35.0%
TGTACGTTAGGCATAAAATC+CGG - chr1_3:47277425-47277444 Msa0121460:intron 35.0%
!! CCGGTTTTAATACTTTGAAC+TGG + chr1_3:47277465-47277484 None:intergenic 35.0%
! CAAAGTATTAAAACCGGTTC+AGG - chr1_3:47277468-47277487 Msa0121460:intron 35.0%
TCTGCTTATACAGCATTCAA+AGG - chr1_3:47277687-47277706 Msa0121460:intron 35.0%
! ATCTGGAAGAACAAGTGTTT+TGG + chr1_3:47277755-47277774 None:intergenic 35.0%
GTTTAACATGCTAGGTTTGT+TGG + chr1_3:47277886-47277905 None:intergenic 35.0%
TGGAAATTGAACTGAAGAAC+TGG + chr1_3:47277926-47277945 None:intergenic 35.0%
TTCAATAGCAGGTGAATGAA+TGG + chr1_3:47278014-47278033 None:intergenic 35.0%
TACGAAGATTGTTCAATAGC+AGG + chr1_3:47278025-47278044 None:intergenic 35.0%
GTTTGAAAAATCCTGGAAGT+TGG - chr1_3:47278127-47278146 Msa0121460:intron 35.0%
! AAAAATCCTGGAAGTTGGTT+GGG - chr1_3:47278132-47278151 Msa0121460:intron 35.0%
CAGCTATTAAAAGGTAATGC+TGG - chr1_3:47278173-47278192 Msa0121460:intron 35.0%
TGTTGCAGTACCATTACTAT+GGG - chr1_3:47278398-47278417 Msa0121460:intron 35.0%
GAATTGTAGAGAAGGTCTAT+TGG - chr1_3:47278472-47278491 Msa0121460:CDS 35.0%
TATACAGAGTGCACAAAGAA+TGG + chr1_3:47278536-47278555 None:intergenic 35.0%
ATCCAATTGTCCATTCTATC+TGG - chr1_3:47278645-47278664 Msa0121460:exon 35.0%
TTTATTGTGGCCAGATAGAA+TGG + chr1_3:47278658-47278677 None:intergenic 35.0%
ATCTGGCCACAATAAATTGT+TGG - chr1_3:47278662-47278681 Msa0121460:exon 35.0%
CCAGAACCAACAATTTATTG+TGG + chr1_3:47278671-47278690 None:intergenic 35.0%
!! CCACAATAAATTGTTGGTTC+TGG - chr1_3:47278668-47278687 Msa0121460:five_prime_UTR 35.0%
CCAAATGGAAATTTAACACC+AGG + chr1_3:47278748-47278767 None:intergenic 35.0%
GTTGAATGAGAAAGGAGGTT+TGG + chr1_3:47273847-47273866 None:intergenic 40.0%
!! TTTGAGGAATGGGTTGCTTT+GGG + chr1_3:47273939-47273958 None:intergenic 40.0%
! GTTGCTGTTGTTTGAGGAAT+GGG + chr1_3:47273949-47273968 None:intergenic 40.0%
! ATTCCTTTGAGTTCTTCCCT+TGG - chr1_3:47273970-47273989 Msa0121460:CDS 40.0%
!! TTGATGCAGAAGCTGTTTTG+TGG - chr1_3:47274209-47274228 Msa0121460:intron 40.0%
TTTACCTTCTTCACCACTGA+CGG - chr1_3:47274605-47274624 Msa0121460:intron 40.0%
GTACATGCAATGCAATCAGT+AGG + chr1_3:47274708-47274727 None:intergenic 40.0%
TCTCATGTTTCACAGAAGCA+AGG - chr1_3:47275252-47275271 Msa0121460:intron 40.0%
CTCATGTTTCACAGAAGCAA+GGG - chr1_3:47275253-47275272 Msa0121460:intron 40.0%
GTATCAAGAGAGCAACTACA+TGG - chr1_3:47275305-47275324 Msa0121460:intron 40.0%
AACTACATGGATCCCAATCA+AGG - chr1_3:47275318-47275337 Msa0121460:intron 40.0%
TCTTTCCAGGGACTTGATAT+GGG - chr1_3:47275452-47275471 Msa0121460:intron 40.0%
GATTGAGATGCTTAGTGATG+TGG - chr1_3:47275508-47275527 Msa0121460:intron 40.0%
!! GGGGTTTGAGCTTGTTAATT+AGG - chr1_3:47275770-47275789 Msa0121460:intron 40.0%
CTCTCGTATCTTCTGCAAAT+TGG + chr1_3:47275913-47275932 None:intergenic 40.0%
GAAAGGAAGTAAGAACCCAA+AGG + chr1_3:47275954-47275973 None:intergenic 40.0%
ATCCTATATCATTCCCCATC+TGG - chr1_3:47276130-47276149 Msa0121460:intron 40.0%
AACCAGATGGGGAATGATAT+AGG + chr1_3:47276135-47276154 None:intergenic 40.0%
AGAGGAATTGAAACCAGATG+GGG + chr1_3:47276146-47276165 None:intergenic 40.0%
ACCCAGTAATTCAGCAAAAG+AGG + chr1_3:47276164-47276183 None:intergenic 40.0%
AGTGAGCTATCTGTGAAGTT+GGG - chr1_3:47276278-47276297 Msa0121460:intron 40.0%
AGAGTGGTTGAAAAGAGGAT+GGG - chr1_3:47276362-47276381 Msa0121460:intron 40.0%
AAAGAGGATGGGGAATGATT+TGG - chr1_3:47276373-47276392 Msa0121460:intron 40.0%
TGATGGAAAAATGTGGTGCA+TGG - chr1_3:47276439-47276458 Msa0121460:intron 40.0%
GGTTAACCGTTTCTCAAAAC+CGG - chr1_3:47276713-47276732 Msa0121460:intron 40.0%
!!! TAGTGACCGGTTTTGAGAAA+CGG + chr1_3:47276722-47276741 None:intergenic 40.0%
AGTGATAGGGTTTGTGAAAC+GGG + chr1_3:47276751-47276770 None:intergenic 40.0%
CAGTGATAGGGTTTGTGAAA+CGG + chr1_3:47276752-47276771 None:intergenic 40.0%
! ACCGTTCGATCTAAGATGAA+CGG + chr1_3:47276913-47276932 None:intergenic 40.0%
TACCATCCAACTTAATCGGA+CGG - chr1_3:47276972-47276991 Msa0121460:intron 40.0%
AAAGATGGACACTTGGGAAT+AGG + chr1_3:47277038-47277057 None:intergenic 40.0%
AGCAAAACCGAATGGAACAA+AGG + chr1_3:47277092-47277111 None:intergenic 40.0%
AGATCGGAGATCTATGCTAT+GGG + chr1_3:47277128-47277147 None:intergenic 40.0%
AAGATCGGAGATCTATGCTA+TGG + chr1_3:47277129-47277148 None:intergenic 40.0%
GATGTGAATTGCATGATGTG+CGG - chr1_3:47277210-47277229 Msa0121460:intron 40.0%
!!! ACTGGTTTTCTATCGACAAC+CGG + chr1_3:47277447-47277466 None:intergenic 40.0%
TAACAGTGTTTGCAGCTGTA+GGG + chr1_3:47277651-47277670 None:intergenic 40.0%
GTTACCCTCCAAAGATCTAA+AGG + chr1_3:47277789-47277808 None:intergenic 40.0%
AAGGAAGCCACAGTTTCTTA+GGG - chr1_3:47277836-47277855 Msa0121460:intron 40.0%
ATCAGTTCCCTAAGAAACTG+TGG + chr1_3:47277846-47277865 None:intergenic 40.0%
GCAATAAGTTACCCCATTAC+AGG - chr1_3:47277972-47277991 Msa0121460:intron 40.0%
! ACAAGTAGCTGGAGCTTTTA+TGG - chr1_3:47278094-47278113 Msa0121460:intron 40.0%
! CAAGTAGCTGGAGCTTTTAT+GGG - chr1_3:47278095-47278114 Msa0121460:intron 40.0%
! GAAAAATCCTGGAAGTTGGT+TGG - chr1_3:47278131-47278150 Msa0121460:intron 40.0%
ATGCTGGTAAAACACATGCT+AGG - chr1_3:47278189-47278208 Msa0121460:intron 40.0%
TGCTGGTAAAACACATGCTA+GGG - chr1_3:47278190-47278209 Msa0121460:intron 40.0%
CTAATGGTCACAGAGAATTG+AGG + chr1_3:47278299-47278318 None:intergenic 40.0%
TAATGGTACTGCAACAGTCA+TGG + chr1_3:47278394-47278413 None:intergenic 40.0%
CTGTTGCAGTACCATTACTA+TGG - chr1_3:47278397-47278416 Msa0121460:intron 40.0%
GTTGCAGTACCATTACTATG+GGG - chr1_3:47278399-47278418 Msa0121460:intron 40.0%
GAGAAAGGAGGTTTGGAAGA+AGG + chr1_3:47273840-47273859 None:intergenic 45.0%
GAGAGGAAGAAGGAGAAACA+GGG + chr1_3:47273893-47273912 None:intergenic 45.0%
TGAGAGGAAGAAGGAGAAAC+AGG + chr1_3:47273894-47273913 None:intergenic 45.0%
!! TTGAGGAATGGGTTGCTTTG+GGG + chr1_3:47273938-47273957 None:intergenic 45.0%
!! GTTTGAGGAATGGGTTGCTT+TGG + chr1_3:47273940-47273959 None:intergenic 45.0%
! CGTTGCTGTTGTTTGAGGAA+TGG + chr1_3:47273950-47273969 None:intergenic 45.0%
! GGAATCGTTGCTGTTGTTTG+AGG + chr1_3:47273955-47273974 None:intergenic 45.0%
!! ACTGACGGACTGATCCAAAT+CGG - chr1_3:47274620-47274639 Msa0121460:intron 45.0%
! ACAGTATCAAAGCATCCGAG+TGG + chr1_3:47274953-47274972 None:intergenic 45.0%
CCTAGACAAAGGCCTTGATT+GGG + chr1_3:47275333-47275352 None:intergenic 45.0%
ACCTAGACAAAGGCCTTGAT+TGG + chr1_3:47275334-47275353 None:intergenic 45.0%
! CAAAGAGTGCACCTAGACAA+AGG + chr1_3:47275344-47275363 None:intergenic 45.0%
CATATCAAGTCCCTGGAAAG+AGG + chr1_3:47275453-47275472 None:intergenic 45.0%
CTCTTTCCAGGGACTTGATA+TGG - chr1_3:47275451-47275470 Msa0121460:intron 45.0%
! GGCAGAAGACTCTGCATTTT+TGG - chr1_3:47275473-47275492 Msa0121460:intron 45.0%
CACTAAGCATCTCAATCGAG+CGG + chr1_3:47275505-47275524 None:intergenic 45.0%
TGTGGTGCAAGATACTGTCT+TGG - chr1_3:47275526-47275545 Msa0121460:intron 45.0%
CAAGATACTGTCTTGGAGCA+TGG - chr1_3:47275533-47275552 Msa0121460:intron 45.0%
ATACTGTCTTGGAGCATGGT+GGG - chr1_3:47275537-47275556 Msa0121460:intron 45.0%
CTAGTGTGCACAAGTGACAT+AGG - chr1_3:47275616-47275635 Msa0121460:intron 45.0%
TGGTGGCAAAATGTTGTGCA+TGG + chr1_3:47275649-47275668 None:intergenic 45.0%
CTCCCGTTAACCCAAAATAC+AGG + chr1_3:47275724-47275743 None:intergenic 45.0%
!! GGCAGGGGTTCAATTTGTTA+GGG - chr1_3:47275750-47275769 Msa0121460:intron 45.0%
!! GCAGGGGTTCAATTTGTTAG+GGG - chr1_3:47275751-47275770 Msa0121460:intron 45.0%
GAGTGAGCTATCTGTGAAGT+TGG - chr1_3:47276277-47276296 Msa0121460:intron 45.0%
TGGAGATGTGGTTATGTCAC+TGG - chr1_3:47276315-47276334 Msa0121460:intron 45.0%
TATGTCACTGGAGAGACTGA+AGG - chr1_3:47276327-47276346 Msa0121460:intron 45.0%
AAGGATTGGAAGGATGAGAG+TGG - chr1_3:47276346-47276365 Msa0121460:intron 45.0%
GGATGAGAGTGGTTGAAAAG+AGG - chr1_3:47276357-47276376 Msa0121460:intron 45.0%
GAGAGTGGTTGAAAAGAGGA+TGG - chr1_3:47276361-47276380 Msa0121460:intron 45.0%
GAGTGGTTGAAAAGAGGATG+GGG - chr1_3:47276363-47276382 Msa0121460:intron 45.0%
GTGCACAAGTGACATAGGTT+TGG + chr1_3:47275621-47275640 None:intergenic 45.0%
CTAGTGTGCACAAGTGACAT+AGG + chr1_3:47275616-47275635 None:intergenic 45.0%
! CTAGGGGTGTGCATAAAAAC+TGG - chr1_3:47276588-47276607 Msa0121460:intron 45.0%
AAACGGGTATGGATAGTGAC+CGG + chr1_3:47276735-47276754 None:intergenic 45.0%
TAGGGTTTGTGAAACGGGTA+TGG + chr1_3:47276746-47276765 None:intergenic 45.0%
! GTTTTTACAGCAGCAGAACC+TGG + chr1_3:47276858-47276877 None:intergenic 45.0%
GCCGTTCATCTTAGATCGAA+CGG - chr1_3:47276909-47276928 Msa0121460:CDS 45.0%
CACAGCTCCTTTGTTCCATT+CGG - chr1_3:47277082-47277101 Msa0121460:CDS 45.0%
! AACCGGTTCAGGACAAAATC+CGG - chr1_3:47277479-47277498 Msa0121460:intron 45.0%
! AACCGGATTTTGTCCTGAAC+CGG + chr1_3:47277484-47277503 None:intergenic 45.0%
CCGGTTCATGTAACTTGAAC+CGG + chr1_3:47277501-47277520 None:intergenic 45.0%
! CCGGTTCAAGTTACATGAAC+CGG - chr1_3:47277498-47277517 Msa0121460:intron 45.0%
!! TACATGAACCGGTTCTGAAC+CGG - chr1_3:47277509-47277528 Msa0121460:intron 45.0%
CAGATCGATACAGTTCAGTC+CGG + chr1_3:47277531-47277550 None:intergenic 45.0%
CTAACAGTGTTTGCAGCTGT+AGG + chr1_3:47277652-47277671 None:intergenic 45.0%
ATTTCTCCACACATCCCACA+AGG - chr1_3:47277817-47277836 Msa0121460:CDS 45.0%
AGAAACTGTGGCTTCCTTGT+GGG + chr1_3:47277834-47277853 None:intergenic 45.0%
AAGAAACTGTGGCTTCCTTG+TGG + chr1_3:47277835-47277854 None:intergenic 45.0%
CAAGGAAGCCACAGTTTCTT+AGG - chr1_3:47277835-47277854 Msa0121460:intron 45.0%
GCTGGTAAAACACATGCTAG+GGG - chr1_3:47278191-47278210 Msa0121460:intron 45.0%
CTTCGCCTAGCTGTTAAAAG+TGG - chr1_3:47278444-47278463 Msa0121460:CDS 45.0%
!! CTCCTCCACTTTTAACAGCT+AGG + chr1_3:47278452-47278471 None:intergenic 45.0%
CTAGCTGTTAAAAGTGGAGG+AGG - chr1_3:47278450-47278469 Msa0121460:CDS 45.0%
TGGAGGAGGAATTGTAGAGA+AGG - chr1_3:47278464-47278483 Msa0121460:CDS 45.0%
GGCCAGATAGAATGGACAAT+TGG + chr1_3:47278650-47278669 None:intergenic 45.0%
AGACGAGGATGAGAGGAAGA+AGG + chr1_3:47273903-47273922 None:intergenic 50.0%
ACGAAGAAGACGAGGATGAG+AGG + chr1_3:47273910-47273929 None:intergenic 50.0%
!! TGAGGAATGGGTTGCTTTGG+GGG + chr1_3:47273937-47273956 None:intergenic 50.0%
GGACCAAGGGAAGAACTCAA+AGG + chr1_3:47273976-47273995 None:intergenic 50.0%
CGTTATCATCGTCGGACCAA+GGG + chr1_3:47273989-47274008 None:intergenic 50.0%
CCTTGGTCCGACGATGATAA+CGG - chr1_3:47273987-47274006 Msa0121460:CDS 50.0%
GAGCGAACCGTTATCATCGT+CGG + chr1_3:47273997-47274016 None:intergenic 50.0%
GATTTGGATCAGTCCGTCAG+TGG + chr1_3:47274621-47274640 None:intergenic 50.0%
GATCCAAATCGGAGGCAACA+TGG - chr1_3:47274631-47274650 Msa0121460:intron 50.0%
GAACCATGTTGCCTCCGATT+TGG + chr1_3:47274637-47274656 None:intergenic 50.0%
CCCAATCAAGGCCTTTGTCT+AGG - chr1_3:47275330-47275349 Msa0121460:intron 50.0%
TTCTGCCCATATCAAGTCCC+TGG + chr1_3:47275460-47275479 None:intergenic 50.0%
GATACTGTCTTGGAGCATGG+TGG - chr1_3:47275536-47275555 Msa0121460:intron 50.0%
TACTGTCTTGGAGCATGGTG+GGG - chr1_3:47275538-47275557 Msa0121460:intron 50.0%
! TTTGGGTTAACGGGAGCAAG+AGG - chr1_3:47275728-47275747 Msa0121460:intron 50.0%
TTGGGTTAACGGGAGCAAGA+GGG - chr1_3:47275729-47275748 Msa0121460:intron 50.0%
! GGGCAGGGGTTCAATTTGTT+AGG - chr1_3:47275749-47275768 Msa0121460:intron 50.0%
ACTCAACGCCTCAAAAGGGT+AGG + chr1_3:47276261-47276280 None:intergenic 50.0%
GCTCACTCAACGCCTCAAAA+GGG + chr1_3:47276265-47276284 None:intergenic 50.0%
AGCTCACTCAACGCCTCAAA+AGG + chr1_3:47276266-47276285 None:intergenic 50.0%
CACTGGAGAGACTGAAGGAT+TGG - chr1_3:47276332-47276351 Msa0121460:intron 50.0%
GGAGAGACTGAAGGATTGGA+AGG - chr1_3:47276336-47276355 Msa0121460:intron 50.0%
! GAGGATGGGGAATGATTTGG+TGG - chr1_3:47276376-47276395 Msa0121460:intron 50.0%
! CATCGCAGCTTTCAAGTCTC+CGG - chr1_3:47276831-47276850 Msa0121460:intron 50.0%
!! AGCCGTCCGATTAAGTTGGA+TGG + chr1_3:47276977-47276996 None:intergenic 50.0%
TGACAGCCGTCCGATTAAGT+TGG + chr1_3:47276981-47277000 None:intergenic 50.0%
GATTCCCTGCTGTAACAGCA+GGG + chr1_3:47277016-47277035 None:intergenic 50.0%
ACATGAGGGAGAGCAACGAA+GGG - chr1_3:47277269-47277288 Msa0121460:intron 50.0%
TTGTGGCGAGGAGAGAGAAA+CGG - chr1_3:47277302-47277321 Msa0121460:intron 50.0%
AGTTCAGTCCGGTTCAGAAC+CGG + chr1_3:47277520-47277539 None:intergenic 50.0%
! CGGACTGAACTGTATCGATC+TGG - chr1_3:47277529-47277548 Msa0121460:intron 50.0%
! ATCCTGGAAGTTGGTTGGGT+TGG - chr1_3:47278136-47278155 Msa0121460:intron 50.0%
AACCAACCCAACCAACTTCC+AGG + chr1_3:47278141-47278160 None:intergenic 50.0%
!! TGGAAGTTGGTTGGGTTGGT+TGG - chr1_3:47278140-47278159 Msa0121460:intron 50.0%
CGCCTAGCTGTTAAAAGTGG+AGG - chr1_3:47278447-47278466 Msa0121460:CDS 50.0%
GGGGAGAAACGAAGAAGACG+AGG + chr1_3:47273918-47273937 None:intergenic 55.0%
CCGTTATCATCGTCGGACCA+AGG + chr1_3:47273990-47274009 None:intergenic 55.0%
CAGTCCGTCAGTGGTGAAGA+AGG + chr1_3:47274612-47274631 None:intergenic 55.0%
!! GACGGACTGATCCAAATCGG+AGG - chr1_3:47274623-47274642 Msa0121460:intron 55.0%
TCAGAAGACTTGACGCGACG+AGG + chr1_3:47274659-47274678 None:intergenic 55.0%
TGGATGAGGGCGAAACCACT+CGG - chr1_3:47274935-47274954 Msa0121460:intron 55.0%
TTAACGGGAGCAAGAGGGCA+GGG - chr1_3:47275734-47275753 Msa0121460:intron 55.0%
! CAGTGGAGCCTACCCTTTTG+AGG - chr1_3:47276250-47276269 Msa0121460:intron 55.0%
! AGCTTTCAAGTCTCCGGACC+AGG - chr1_3:47276837-47276856 Msa0121460:intron 55.0%
TACAGCAGCAGAACCTGGTC+CGG + chr1_3:47276853-47276872 None:intergenic 55.0%
AGCACCCTGCTGTTACAGCA+GGG - chr1_3:47277009-47277028 Msa0121460:intron 55.0%
GGATTCCCTGCTGTAACAGC+AGG + chr1_3:47277017-47277036 None:intergenic 55.0%
CACATGAGGGAGAGCAACGA+AGG - chr1_3:47277268-47277287 Msa0121460:intron 55.0%
GAGCAACGAAGGGAGAGAAG+TGG - chr1_3:47277279-47277298 Msa0121460:intron 55.0%
CGAAGGGAGAGAAGTGGTTG+TGG - chr1_3:47277285-47277304 Msa0121460:intron 55.0%
GGAGAGAGAAACGGCAGTAG+CGG - chr1_3:47277311-47277330 Msa0121460:intron 55.0%
AGAGAGAAACGGCGGTGGTA+GGG - chr1_3:47277343-47277362 Msa0121460:intron 55.0%
GCAGCTGTAGGGTGTGCAAA+TGG + chr1_3:47277640-47277659 None:intergenic 55.0%
TGGCTTCCTTGTGGGATGTG+TGG + chr1_3:47277826-47277845 None:intergenic 55.0%
ACAGGTGATTGCCGCAGAGA+AGG - chr1_3:47278338-47278357 Msa0121460:intron 55.0%
ACCTCTGCTTGCCTTCTCTG+CGG + chr1_3:47278352-47278371 None:intergenic 55.0%
GGAGGAACGCCCCATAGTAA+TGG + chr1_3:47278411-47278430 None:intergenic 55.0%
! CGAAGTGTCTCAGAAGCTGG+AGG + chr1_3:47278429-47278448 None:intergenic 55.0%
! AGGCGAAGTGTCTCAGAAGC+TGG + chr1_3:47278432-47278451 None:intergenic 55.0%
! TGTCTTGGAGCATGGTGGGG+AGG - chr1_3:47275541-47275560 Msa0121460:intron 60.0%
! TTGGAGCATGGTGGGGAGGT+AGG - chr1_3:47275545-47275564 Msa0121460:intron 60.0%
GTTAACGGGAGCAAGAGGGC+AGG - chr1_3:47275733-47275752 Msa0121460:intron 60.0%
TAACGGGAGCAAGAGGGCAG+GGG - chr1_3:47275735-47275754 Msa0121460:intron 60.0%
CAGCACCCTGCTGTTACAGC+AGG - chr1_3:47277008-47277027 Msa0121460:intron 60.0%
GGAGAGAAGTGGTTGTGGCG+AGG - chr1_3:47277290-47277309 Msa0121460:intron 60.0%
GAGAGAAACGGCAGTAGCGG+TGG - chr1_3:47277314-47277333 Msa0121460:intron 60.0%
AGAAACGGCAGTAGCGGTGG+CGG - chr1_3:47277317-47277336 Msa0121460:intron 60.0%
!! GGTGGCGGAGGAGAGAGAAA+CGG - chr1_3:47277332-47277351 Msa0121460:intron 60.0%
GAGAGAGAAACGGCGGTGGT+AGG - chr1_3:47277342-47277361 Msa0121460:intron 60.0%
GAGAGAAACGGCGGTGGTAG+GGG - chr1_3:47277344-47277363 Msa0121460:intron 60.0%
GGCGGAGGAGAGAGAAACGG+CGG - chr1_3:47277335-47277354 Msa0121460:intron 65.0%
GGAGGAGAGAGAAACGGCGG+TGG - chr1_3:47277338-47277357 Msa0121460:intron 65.0%
GCGGTGGTAGGGGAGAGAAG+CGG - chr1_3:47277354-47277373 Msa0121460:intron 65.0%
GTGGTAGGGGAGAGAAGCGG+CGG - chr1_3:47277357-47277376 Msa0121460:intron 65.0%
GAAGCGGCGGTGGTAGGTGT+AGG - chr1_3:47277370-47277389 Msa0121460:intron 65.0%
GCCGCAGAGAAGGCAAGCAG+AGG - chr1_3:47278348-47278367 Msa0121460:intron 65.0%
! AACGGCAGTAGCGGTGGCGG+AGG - chr1_3:47277320-47277339 Msa0121460:intron 70.0%
GTAGGGGAGAGAAGCGGCGG+TGG - chr1_3:47277360-47277379 Msa0121460:intron 70.0%
GGGAGAGAAGCGGCGGTGGT+AGG - chr1_3:47277364-47277383 Msa0121460:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47273664 47278767 47273664 ID=Msa0121460;Name=Msa0121460
chr1_3 mRNA 47273664 47278767 47273664 ID=Msa0121460-mRNA-1;Parent=Msa0121460;Name=Msa0121460-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104|0.75|0.8|1|0.75|0.8|5|255|235
chr1_3 exon 47273664 47274089 47273664 ID=Msa0121460-mRNA-1:exon:14263;Parent=Msa0121460-mRNA-1
chr1_3 exon 47276890 47276970 47276890 ID=Msa0121460-mRNA-1:exon:14262;Parent=Msa0121460-mRNA-1
chr1_3 exon 47277051 47277164 47277051 ID=Msa0121460-mRNA-1:exon:14261;Parent=Msa0121460-mRNA-1
chr1_3 exon 47277752 47277852 47277752 ID=Msa0121460-mRNA-1:exon:14260;Parent=Msa0121460-mRNA-1
chr1_3 exon 47278423 47278767 47278423 ID=Msa0121460-mRNA-1:exon:14259;Parent=Msa0121460-mRNA-1
chr1_3 five_prime_UTR 47278664 47278767 47278664 ID=Msa0121460-mRNA-1:five_prime_utr;Parent=Msa0121460-mRNA-1
chr1_3 CDS 47278423 47278663 47278423 ID=Msa0121460-mRNA-1:cds;Parent=Msa0121460-mRNA-1
chr1_3 CDS 47277752 47277852 47277752 ID=Msa0121460-mRNA-1:cds;Parent=Msa0121460-mRNA-1
chr1_3 CDS 47277051 47277164 47277051 ID=Msa0121460-mRNA-1:cds;Parent=Msa0121460-mRNA-1
chr1_3 CDS 47276890 47276970 47276890 ID=Msa0121460-mRNA-1:cds;Parent=Msa0121460-mRNA-1
chr1_3 CDS 47273919 47274089 47273919 ID=Msa0121460-mRNA-1:cds;Parent=Msa0121460-mRNA-1
chr1_3 three_prime_UTR 47273664 47273918 47273664 ID=Msa0121460-mRNA-1:three_prime_utr;Parent=Msa0121460-mRNA-1
Gene Sequence

>Msa0121460

ATGGCTGAAACTTCAACCCTATTCAGATTCAGATTCTCTTCTCCACCATTCAACAATTCCATCATTTCTCCTTCTTCCAAACCTCCTTTCTCATTCAACAACAACAACAACAACAACTCTTTCCCTGTTTCTCCTTCTTCCTCTCATCCTCGTCTTCTTCGTTTCTCCCCCAAAGCAACCCATTCCTCAAACAACAGCAACGATTCCTTTGAGTTCTTCCCTTGGTCCGACGATGATAACGAAATTCAATGGGTTTCTCAGGACAAATTTACCTTCTTCACCACTGACGGACTGATCCAAATCGGAGGCAACATGGTTCCTCGTCGCGTCAAGTCTTCTGATAAGCAAGGGAAATCCCAAACTGCTAAAAAATATCAGCGGTATCAAGAGAGCAACTACATGGATCCCAATCAAGGCCTTTGTCTAGGTGCACTCTTTGATATTGCAGCTACAAATGGACTTGATATGGGCAGAAGACTCTGCATTTTTGGTTTCTGCCGCTCGATTGAGATGCTTAGTGATGTGGTGCAAGATACTGTGATTGCCGCAGAGAAGGCAAGCAGAGGTGATTTGCATGAAAAGCTAACCATGACTGTTGCAGTACCATTACTATGGGGCGTTCCTCCAGCTTCTGAGACACTTCGCCTAGCTGTTAAAAGTGGAGGAGGAATTGTAGAGAAGGTCTATTGGCAATTCGACTTTCTGTAG

Protein sequence

>Msa0121460

MAETSTLFRFRFSSPPFNNSIISPSSKPPFSFNNNNNNNSFPVSPSSSHPRLLRFSPKATHSSNNSNDSFEFFPWSDDDNEIQWVSQDKFTFFTTDGLIQIGGNMVPRRVKSSDKQGKSQTAKKYQRYQESNYMDPNQGLCLGALFDIAATNGLDMGRRLCIFGFCRSIEMLSDVVQDTVIAAEKASRGDLHEKLTMTVAVPLLWGVPPASETLRLAVKSGGGIVEKVYWQFDFL*