Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503560 | XP_039687154.1 | 88.801 | 759 | 66 | 5 | 1 | 750 | 1 | 749 | 0.0 | 1332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503560 | A0A396IRT2 | 88.801 | 759 | 66 | 5 | 1 | 750 | 1 | 749 | 0.0 | 1332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0503560 | 0.848879 | 4.625563e-60 | -8.615850e-47 |
| Msa0028640 | Msa0503560 | 0.814631 | 1.396004e-51 | -8.615850e-47 |
| Msa0036430 | Msa0503560 | 0.803354 | 3.628117e-49 | -8.615850e-47 |
| Msa0040450 | Msa0503560 | 0.802640 | 5.096463e-49 | -8.615850e-47 |
| Msa0044020 | Msa0503560 | 0.801732 | 7.835915e-49 | -8.615850e-47 |
| Msa0046100 | Msa0503560 | 0.805102 | 1.569525e-49 | -8.615850e-47 |
| Msa0072370 | Msa0503560 | 0.806653 | 7.408923e-50 | -8.615850e-47 |
| Msa0110970 | Msa0503560 | 0.848807 | 4.844167e-60 | -8.615850e-47 |
| Msa0124340 | Msa0503560 | 0.812683 | 3.747789e-51 | -8.615850e-47 |
| Msa0157290 | Msa0503560 | 0.848690 | 5.219526e-60 | -8.615850e-47 |
| Msa0173990 | Msa0503560 | 0.812230 | 4.707389e-51 | -8.615850e-47 |
| Msa0227470 | Msa0503560 | 0.822430 | 2.379586e-53 | -8.615850e-47 |
| Msa0410650 | Msa0503560 | 0.823813 | 1.131416e-53 | -8.615850e-47 |
| Msa0417880 | Msa0503560 | 0.815321 | 9.817162e-52 | -8.615850e-47 |
| Msa0450440 | Msa0503560 | 0.806087 | 9.752717e-50 | -8.615850e-47 |
| Msa0461720 | Msa0503560 | 0.818729 | 1.684195e-52 | -8.615850e-47 |
| Msa0461730 | Msa0503560 | 0.880952 | 3.590388e-70 | -8.615850e-47 |
| Msa0475790 | Msa0503560 | 0.817742 | 2.816474e-52 | -8.615850e-47 |
| Msa0243100 | Msa0503560 | 0.810680 | 1.022058e-50 | -8.615850e-47 |
| Msa0261340 | Msa0503560 | 0.807786 | 4.263724e-50 | -8.615850e-47 |
| Msa0287650 | Msa0503560 | 0.805238 | 1.469931e-49 | -8.615850e-47 |
| Msa0296560 | Msa0503560 | 0.807486 | 4.938021e-50 | -8.615850e-47 |
| Msa0306300 | Msa0503560 | 0.805884 | 1.075802e-49 | -8.615850e-47 |
| Msa0335040 | Msa0503560 | 0.806188 | 9.287117e-50 | -8.615850e-47 |
| Msa0363350 | Msa0503560 | 0.813200 | 2.887011e-51 | -8.615850e-47 |
| Msa0484780 | Msa0503560 | 0.831628 | 1.498868e-55 | -8.615850e-47 |
| Msa0495320 | Msa0503560 | 0.802657 | 5.056148e-49 | -8.615850e-47 |
| Msa0503560 | Msa0503580 | 0.835099 | 2.043080e-56 | -8.615850e-47 |
| Msa0503560 | Msa0507680 | 0.820635 | 6.181367e-53 | -8.615850e-47 |
| Msa0503560 | Msa0534590 | 0.819399 | 1.185478e-52 | -8.615850e-47 |
| Msa0503560 | Msa0550430 | 0.803289 | 3.743338e-49 | -8.615850e-47 |
| Msa0503560 | Msa0590800 | 0.826415 | 2.747894e-54 | -8.615850e-47 |
| Msa0503560 | Msa0624510 | 0.821547 | 3.810367e-53 | -8.615850e-47 |
| Msa0503560 | Msa0631120 | 0.801064 | 1.074005e-48 | -8.615850e-47 |
| Msa0503560 | Msa0657970 | 0.831568 | 1.550869e-55 | -8.615850e-47 |
| Msa0503560 | Msa0669340 | 0.806129 | 9.554018e-50 | -8.615850e-47 |
| Msa0503560 | Msa0684500 | 0.823853 | 1.107223e-53 | -8.615850e-47 |
| Msa0503560 | Msa0693380 | 0.812478 | 4.155059e-51 | -8.615850e-47 |
| Msa0503560 | Msa0727710 | 0.807795 | 4.244939e-50 | -8.615850e-47 |
| Msa0503560 | Msa0824660 | 0.800828 | 1.200098e-48 | -8.615850e-47 |
| Msa0503560 | Msa0844240 | 0.809474 | 1.858641e-50 | -8.615850e-47 |
| Msa0503560 | Msa0870530 | 0.802403 | 5.705168e-49 | -8.615850e-47 |
| Msa0503560 | Msa0880140 | 0.850208 | 1.970411e-60 | -8.615850e-47 |
| Msa0503560 | Msa0966420 | 0.810626 | 1.049676e-50 | -8.615850e-47 |
| Msa0503560 | Msa1004550 | 0.803221 | 3.865770e-49 | -8.615850e-47 |
| Msa0503560 | Msa1004600 | 0.801085 | 1.063586e-48 | -8.615850e-47 |
| Msa0503560 | Msa1009000 | 0.800299 | 1.538040e-48 | -8.615850e-47 |
| Msa0503560 | Msa1082500 | 0.819197 | 1.318264e-52 | -8.615850e-47 |
| Msa0503560 | Msa1085200 | 0.820389 | 7.037437e-53 | -8.615850e-47 |
| Msa0503560 | Msa1098560 | 0.806831 | 6.794114e-50 | -8.615850e-47 |
| Msa0503560 | Msa1108160 | 0.808427 | 3.113852e-50 | -8.615850e-47 |
| Msa0503560 | Msa1139810 | 0.802562 | 5.290427e-49 | -8.615850e-47 |
| Msa0503560 | Msa1154710 | 0.819518 | 1.113775e-52 | -8.615850e-47 |
| Msa0503560 | Msa1172450 | 0.810978 | 8.808311e-51 | -8.615850e-47 |
| Msa0503560 | Msa1197590 | 0.805387 | 1.367989e-49 | -8.615850e-47 |
| Msa0503560 | Msa1199220 | 0.809861 | 1.534653e-50 | -8.615850e-47 |
| Msa0503560 | Msa1201470 | 0.819215 | 1.305505e-52 | -8.615850e-47 |
| Msa0503560 | Msa1228210 | 0.817480 | 3.227174e-52 | -8.615850e-47 |
| Msa0503560 | Msa1236100 | 0.804165 | 2.462354e-49 | -8.615850e-47 |
| Msa0503560 | Msa1242220 | 0.816773 | 4.651423e-52 | -8.615850e-47 |
| Msa0503560 | Msa1242230 | 0.830767 | 2.439152e-55 | -8.615850e-47 |
| Msa0503560 | Msa1242240 | 0.837096 | 6.359396e-57 | -8.615850e-47 |
| Msa0503560 | Msa1271280 | 0.804632 | 1.968353e-49 | -8.615850e-47 |
| Msa0503560 | Msa1271290 | 0.808754 | 2.651723e-50 | -8.615850e-47 |
| Msa0503560 | Msa1271300 | 0.813414 | 2.590706e-51 | -8.615850e-47 |
| Msa0503560 | Msa1278840 | 0.844890 | 5.712447e-59 | -8.615850e-47 |
| Msa0503560 | Msa1283840 | 0.807716 | 4.412247e-50 | -8.615850e-47 |
| Msa0503560 | Msa1283860 | 0.815354 | 9.652385e-52 | -8.615850e-47 |
| Msa0503560 | Msa1289280 | 0.823035 | 1.720484e-53 | -8.615850e-47 |
| Msa0503560 | Msa1300490 | 0.805627 | 1.218425e-49 | -8.615850e-47 |
| Msa0503560 | Msa1308380 | 0.814607 | 1.413767e-51 | -8.615850e-47 |
| Msa0503560 | Msa1318240 | 0.817867 | 2.638499e-52 | -8.615850e-47 |
| Msa0503560 | Msa1322860 | 0.814259 | 1.687304e-51 | -8.615850e-47 |
| Msa0503560 | Msa1322890 | 0.807646 | 4.566859e-50 | -8.615850e-47 |
| Msa0503560 | Msa1384350 | 0.803733 | 3.027267e-49 | -8.615850e-47 |
| Msa0503560 | Msa1414740 | 0.825647 | 4.182731e-54 | -8.615850e-47 |
| Msa0503560 | Msa1438740 | 0.807863 | 4.106114e-50 | -8.615850e-47 |
| Msa0503560 | Msa1452120 | 0.800101 | 1.687965e-48 | -8.615850e-47 |
| Msa0503560 | Msa1460240 | 0.805985 | 1.024739e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503560 | MtrunA17_Chr3g0102001 | 88.801 | 759 | 66 | 5 | 1 | 750 | 1 | 749 | 0.0 | 1332 |
| Msa0503560 | MtrunA17_Chr5g0439061 | 46.944 | 769 | 335 | 16 | 19 | 750 | 12 | 744 | 0.0 | 623 |
| Msa0503560 | MtrunA17_Chr3g0098541 | 81.402 | 371 | 51 | 5 | 52 | 416 | 1 | 359 | 0.0 | 612 |
| Msa0503560 | MtrunA17_Chr2g0286601 | 35.978 | 731 | 411 | 14 | 25 | 746 | 7 | 689 | 1.16e-137 | 422 |
| Msa0503560 | MtrunA17_Chr2g0286551 | 36.126 | 728 | 393 | 15 | 25 | 746 | 7 | 668 | 2.58e-122 | 381 |
| Msa0503560 | MtrunA17_Chr3g0098481 | 52.848 | 316 | 138 | 4 | 438 | 747 | 32 | 342 | 1.98e-109 | 336 |
| Msa0503560 | MtrunA17_Chr3g0098531 | 50.168 | 297 | 138 | 4 | 459 | 750 | 6 | 297 | 5.05e-97 | 302 |
| Msa0503560 | MtrunA17_Chr5g0439071 | 35.714 | 574 | 281 | 15 | 19 | 547 | 12 | 542 | 1.07e-89 | 292 |
| Msa0503560 | MtrunA17_Chr3g0098301 | 48.387 | 310 | 149 | 4 | 438 | 741 | 98 | 402 | 5.11e-87 | 280 |
| Msa0503560 | MtrunA17_Chr5g0439051 | 65.686 | 204 | 69 | 1 | 547 | 750 | 20 | 222 | 8.81e-85 | 268 |
| Msa0503560 | MtrunA17_Chr5g0439081 | 55.779 | 199 | 86 | 1 | 547 | 745 | 16 | 212 | 1.14e-70 | 230 |
| Msa0503560 | MtrunA17_Chr3g0098291 | 54.884 | 215 | 84 | 5 | 31 | 242 | 31 | 235 | 1.43e-65 | 217 |
| Msa0503560 | MtrunA17_Chr2g0286561 | 48.095 | 210 | 109 | 0 | 537 | 746 | 5 | 214 | 7.35e-60 | 201 |
| Msa0503560 | MtrunA17_Chr2g0284501 | 27.762 | 706 | 416 | 16 | 53 | 742 | 40 | 667 | 4.46e-59 | 212 |
| Msa0503560 | MtrunA17_Chr5g0439021 | 51.412 | 177 | 75 | 3 | 19 | 191 | 12 | 181 | 7.43e-50 | 173 |
| Msa0503560 | MtrunA17_Chr3g0098491 | 51.534 | 163 | 63 | 3 | 32 | 191 | 1 | 150 | 3.23e-48 | 167 |
| Msa0503560 | MtrunA17_Chr3g0098521 | 50.617 | 162 | 70 | 2 | 32 | 193 | 1 | 152 | 6.40e-46 | 161 |
| Msa0503560 | MtrunA17_Chr5g0443001 | 35.452 | 299 | 185 | 3 | 438 | 735 | 309 | 600 | 1.91e-45 | 172 |
| Msa0503560 | MtrunA17_Chr5g0443001 | 26.606 | 218 | 137 | 4 | 32 | 244 | 39 | 238 | 1.55e-12 | 70.9 |
| Msa0503560 | MtrunA17_Chr2g0297701 | 33.775 | 302 | 190 | 3 | 437 | 735 | 274 | 568 | 6.63e-45 | 170 |
| Msa0503560 | MtrunA17_Chr5g0410201 | 32.667 | 300 | 193 | 4 | 441 | 737 | 33 | 326 | 9.57e-44 | 160 |
| Msa0503560 | MtrunA17_Chr5g0410171 | 32.890 | 301 | 191 | 5 | 441 | 737 | 439 | 732 | 8.39e-43 | 166 |
| Msa0503560 | MtrunA17_Chr5g0410171 | 30.000 | 240 | 121 | 10 | 27 | 240 | 126 | 344 | 5.87e-11 | 66.2 |
| Msa0503560 | MtrunA17_Chr5g0410271 | 32.667 | 300 | 193 | 4 | 441 | 737 | 32 | 325 | 9.77e-43 | 158 |
| Msa0503560 | MtrunA17_Chr6g0456141 | 32.441 | 299 | 192 | 4 | 441 | 737 | 92 | 382 | 1.27e-42 | 159 |
| Msa0503560 | MtrunA17_Chr5g0410341 | 33.555 | 301 | 189 | 5 | 441 | 737 | 451 | 744 | 2.04e-42 | 165 |
| Msa0503560 | MtrunA17_Chr5g0410341 | 29.864 | 221 | 121 | 9 | 27 | 229 | 123 | 327 | 1.66e-13 | 74.3 |
| Msa0503560 | MtrunA17_Chr2g0284541 | 37.621 | 311 | 174 | 6 | 440 | 742 | 351 | 649 | 9.04e-42 | 162 |
| Msa0503560 | MtrunA17_Chr2g0284541 | 26.027 | 219 | 143 | 5 | 36 | 244 | 13 | 222 | 2.30e-11 | 67.4 |
| Msa0503560 | MtrunA17_Chr2g0297481 | 33.108 | 296 | 185 | 5 | 442 | 735 | 186 | 470 | 2.22e-41 | 158 |
| Msa0503560 | MtrunA17_Chr6g0457101 | 32.390 | 318 | 200 | 5 | 426 | 737 | 378 | 686 | 3.15e-41 | 161 |
| Msa0503560 | MtrunA17_Chr6g0457101 | 27.232 | 224 | 144 | 6 | 25 | 243 | 113 | 322 | 3.45e-11 | 66.6 |
| Msa0503560 | MtrunA17_Chr2g0297491 | 32.432 | 296 | 191 | 3 | 442 | 735 | 88 | 376 | 7.67e-40 | 151 |
| Msa0503560 | MtrunA17_Chr6g0456101 | 31.894 | 301 | 191 | 5 | 441 | 735 | 449 | 741 | 1.27e-39 | 156 |
| Msa0503560 | MtrunA17_Chr2g0297691 | 32.026 | 306 | 198 | 5 | 433 | 735 | 392 | 690 | 1.59e-39 | 155 |
| Msa0503560 | MtrunA17_Chr2g0297681 | 31.596 | 307 | 200 | 5 | 433 | 736 | 390 | 689 | 2.01e-39 | 155 |
| Msa0503560 | MtrunA17_Chr3g0100741 | 34.146 | 287 | 178 | 5 | 438 | 722 | 304 | 581 | 1.97e-38 | 151 |
| Msa0503560 | MtrunA17_Chr5g0410371 | 34.333 | 300 | 184 | 6 | 442 | 735 | 1 | 293 | 2.37e-37 | 142 |
| Msa0503560 | MtrunA17_Chr5g0410461 | 33.444 | 302 | 187 | 4 | 441 | 735 | 167 | 461 | 2.79e-37 | 145 |
| Msa0503560 | MtrunA17_Chr2g0297651 | 33.227 | 313 | 196 | 8 | 427 | 735 | 386 | 689 | 2.91e-37 | 149 |
| Msa0503560 | MtrunA17_Chr3g0100301 | 37.374 | 198 | 122 | 2 | 531 | 727 | 204 | 400 | 1.68e-35 | 139 |
| Msa0503560 | MtrunA17_Chr2g0286571 | 33.077 | 260 | 154 | 5 | 25 | 280 | 7 | 250 | 8.14e-33 | 129 |
| Msa0503560 | MtrunA17_Chr2g0297711 | 28.617 | 311 | 207 | 6 | 431 | 735 | 224 | 525 | 1.13e-32 | 133 |
| Msa0503560 | MtrunA17_Chr3g0096941 | 30.293 | 307 | 202 | 5 | 438 | 740 | 305 | 603 | 1.80e-32 | 133 |
| Msa0503560 | MtrunA17_Chr5g0410191 | 36.932 | 176 | 110 | 1 | 562 | 737 | 17 | 191 | 2.30e-32 | 124 |
| Msa0503560 | MtrunA17_Chr5g0410581 | 30.169 | 295 | 195 | 4 | 438 | 726 | 495 | 784 | 3.73e-31 | 130 |
| Msa0503560 | MtrunA17_Chr5g0439031 | 38.389 | 211 | 110 | 4 | 192 | 398 | 7 | 201 | 4.68e-31 | 122 |
| Msa0503560 | MtrunA17_Chr3g0098511 | 51.515 | 99 | 46 | 1 | 651 | 747 | 1 | 99 | 6.69e-30 | 114 |
| Msa0503560 | MtrunA17_Chr5g0439041 | 49.194 | 124 | 60 | 2 | 427 | 547 | 45 | 168 | 2.19e-29 | 116 |
| Msa0503560 | MtrunA17_Chr5g0410541 | 37.324 | 142 | 88 | 1 | 562 | 703 | 38 | 178 | 1.15e-21 | 94.4 |
| Msa0503560 | MtrunA17_Chr5g0410451 | 29.064 | 203 | 136 | 3 | 541 | 737 | 35 | 235 | 8.97e-20 | 89.4 |
| Msa0503560 | MtrunA17_Chr5g0410181 | 33.333 | 132 | 87 | 1 | 606 | 737 | 2 | 132 | 9.35e-19 | 83.2 |
| Msa0503560 | MtrunA17_Chr5g0410511 | 33.108 | 148 | 99 | 0 | 547 | 694 | 2 | 149 | 1.02e-16 | 79.3 |
| Msa0503560 | MtrunA17_Chr5g0410291 | 32.161 | 199 | 114 | 8 | 48 | 240 | 8 | 191 | 4.10e-15 | 75.1 |
| Msa0503560 | MtrunA17_Chr7g0263471 | 31.928 | 166 | 96 | 3 | 53 | 218 | 118 | 266 | 3.98e-14 | 75.9 |
| Msa0503560 | MtrunA17_Chr2g0297611 | 36.264 | 91 | 56 | 2 | 552 | 642 | 1 | 89 | 2.35e-13 | 66.2 |
| Msa0503560 | MtrunA17_Chr5g0410211 | 28.358 | 201 | 123 | 6 | 50 | 240 | 7 | 196 | 1.76e-12 | 67.0 |
| Msa0503560 | MtrunA17_Chr1g0211531 | 23.364 | 321 | 222 | 6 | 437 | 740 | 235 | 548 | 1.99e-12 | 70.5 |
| Msa0503560 | MtrunA17_Chr5g0410381 | 30.043 | 233 | 114 | 9 | 44 | 240 | 22 | 241 | 5.36e-12 | 66.6 |
| Msa0503560 | MtrunA17_Chr3g0100921 | 28.030 | 132 | 95 | 0 | 596 | 727 | 2 | 133 | 2.83e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503560 | AT5G35810.1 | 33.550 | 307 | 188 | 4 | 438 | 735 | 31 | 330 | 3.15e-45 | 166 |
| Msa0503560 | AT3G18670.1 | 33.546 | 313 | 196 | 5 | 441 | 750 | 292 | 595 | 5.96e-45 | 171 |
| Msa0503560 | AT3G18670.2 | 33.546 | 313 | 196 | 5 | 441 | 750 | 347 | 650 | 8.12e-45 | 171 |
| Msa0503560 | AT3G18670.2 | 27.957 | 186 | 123 | 4 | 60 | 243 | 86 | 262 | 7.28e-14 | 75.9 |
| Msa0503560 | AT5G04730.1 | 34.416 | 308 | 180 | 7 | 441 | 739 | 297 | 591 | 1.68e-41 | 160 |
| Msa0503560 | AT5G04700.1 | 33.443 | 305 | 193 | 5 | 439 | 739 | 360 | 658 | 2.98e-37 | 149 |
| Msa0503560 | AT3G54065.1 | 36.667 | 210 | 127 | 1 | 533 | 736 | 8 | 217 | 1.21e-36 | 138 |
| Msa0503560 | AT5G04690.3 | 36.441 | 236 | 135 | 4 | 512 | 739 | 406 | 634 | 1.44e-35 | 144 |
| Msa0503560 | AT5G04690.1 | 36.441 | 236 | 135 | 4 | 512 | 739 | 386 | 614 | 1.48e-35 | 143 |
| Msa0503560 | AT5G04690.2 | 36.441 | 236 | 135 | 4 | 512 | 739 | 420 | 648 | 1.51e-35 | 144 |
| Msa0503560 | AT5G04680.3 | 31.935 | 310 | 191 | 7 | 439 | 735 | 333 | 635 | 5.51e-30 | 126 |
| Msa0503560 | AT5G04680.2 | 32.698 | 315 | 189 | 8 | 437 | 735 | 219 | 526 | 7.32e-30 | 125 |
| Msa0503560 | AT5G04680.4 | 31.935 | 310 | 191 | 7 | 439 | 735 | 347 | 649 | 7.43e-30 | 126 |
| Msa0503560 | AT5G04680.1 | 31.935 | 310 | 191 | 7 | 439 | 735 | 376 | 678 | 8.27e-30 | 126 |
Find 144 sgRNAs with CRISPR-Local
Find 437 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACATGAGAAAGCAATTT+TGG | 0.144091 | 3_4:+46848655 | Msa0503560:CDS |
| ATCTATACCCTTGGCCTTTC+AGG | 0.155662 | 3_4:+46847661 | Msa0503560:CDS |
| TTTGCTTTGTCTTCAGTAAT+TGG | 0.161186 | 3_4:+46849961 | Msa0503560:CDS |
| TCAACTCTTGAACATATTTA+TGG | 0.163849 | 3_4:+46847962 | Msa0503560:CDS |
| AATATACCTTAGAAGGAAAA+TGG | 0.211161 | 3_4:+46843509 | Msa0503560:CDS |
| TGTTCCTTGCTGCACTTTCC+TGG | 0.224724 | 3_4:+46843836 | Msa0503560:CDS |
| TTCCAAGTTAAGATCGTATA+TGG | 0.236248 | 3_4:-46848759 | None:intergenic |
| CATATCAATTCTGAAATCTT+TGG | 0.253328 | 3_4:-46850046 | None:intergenic |
| ATTGACATTGATAACAATAA+TGG | 0.275395 | 3_4:+46843802 | Msa0503560:CDS |
| GTGGCATATAAAATGGTTTC+AGG | 0.287876 | 3_4:+46848988 | Msa0503560:CDS |
| AGCGACGAACATTGCAATAA+TGG | 0.298105 | 3_4:-46850109 | None:intergenic |
| TATTCCTTTAGCTTGTCTTC+TGG | 0.299965 | 3_4:-46843490 | None:intergenic |
| AATGATCAGATACCTTGATT+TGG | 0.300428 | 3_4:-46848095 | None:intergenic |
| TATGCCAAGGAAACTTCTTT+TGG | 0.300612 | 3_4:+46850065 | Msa0503560:CDS |
| CCAATGTCGTTGAGGCATTA+AGG | 0.302274 | 3_4:+46848822 | Msa0503560:CDS |
| TAACATGTGTCGTAGTTCTT+TGG | 0.306623 | 3_4:-46846911 | None:intergenic |
| CGATTGCTTCATCAACGTTT+AGG | 0.306700 | 3_4:-46846844 | None:intergenic |
| AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3_4:+46847620 | Msa0503560:CDS |
| ACTCACATCTCCTGTTGGTT+TGG | 0.320602 | 3_4:-46848045 | None:intergenic |
| CTTACATGTAAGAATGAAAA+AGG | 0.321199 | 3_4:+46843691 | Msa0503560:CDS |
| AAATGATGTGGCATATAAAA+TGG | 0.339034 | 3_4:+46848981 | Msa0503560:CDS |
| CTAAAGGAATATACCTTAGA+AGG | 0.341785 | 3_4:+46843502 | Msa0503560:CDS |
| GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3_4:-46848939 | None:intergenic |
| ATGATCAGATACCTTGATTT+GGG | 0.347565 | 3_4:-46848094 | None:intergenic |
| GGAAGAAGCTTGGGTTTAGA+TGG | 0.373176 | 3_4:-46847595 | None:intergenic |
| GTAGTAGCAGCACTCCTTGC+CGG | 0.383621 | 3_4:+46849847 | Msa0503560:CDS |
| TATATTTATATGTATGATGT+TGG | 0.391082 | 3_4:+46850414 | Msa0503560:three_prime_UTR |
| AAATCCTTATGAATCGTACT+TGG | 0.400227 | 3_4:+46848013 | Msa0503560:CDS |
| ATCACTTGTCTTTGGCACTT+TGG | 0.403980 | 3_4:-46850274 | None:intergenic |
| TACTTGTAGCAGTTGAGAAC+AGG | 0.405850 | 3_4:+46848795 | Msa0503560:CDS |
| GTGCCAAAGACAAGTGATAA+GGG | 0.412267 | 3_4:+46850279 | Msa0503560:CDS |
| AAAGCGGATACAAGATGATA+TGG | 0.412635 | 3_4:+46845557 | Msa0503560:CDS |
| GGCGGCAACAGAAGTGAAAC+AGG | 0.413726 | 3_4:+46849901 | Msa0503560:CDS |
| GATCGAGATTGGAACATATC+TGG | 0.414209 | 3_4:+46848947 | Msa0503560:CDS |
| TTTGGTCAATAAGAAAGAAA+TGG | 0.416646 | 3_4:-46850143 | None:intergenic |
| GATATATGTGAATGTATCAT+AGG | 0.422438 | 3_4:+46843754 | Msa0503560:CDS |
| ACCCTTGGCCTTTCAGGAGT+TGG | 0.424978 | 3_4:+46847667 | Msa0503560:CDS |
| AATCCCAAAAGAAGTTTCCT+TGG | 0.428987 | 3_4:-46850069 | None:intergenic |
| TCTCTCTCTCATCCACCCCT+TGG | 0.430574 | 3_4:-46848892 | None:intergenic |
| ATAACAGTACTACCTATGTT+TGG | 0.441146 | 3_4:+46850357 | Msa0503560:three_prime_UTR |
| CTCTCAAACTTCTTGCTACT+AGG | 0.447146 | 3_4:+46845521 | Msa0503560:CDS |
| AAACCAGGTAGGAGTGTTTG+TGG | 0.450796 | 3_4:+46843892 | Msa0503560:CDS |
| CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3_4:+46848936 | Msa0503560:CDS |
| TTTGATTTCAACCCAAATCA+AGG | 0.452198 | 3_4:+46848083 | Msa0503560:CDS |
| GTTTCACTTCTGTTGCCGCC+TGG | 0.452202 | 3_4:-46849898 | None:intergenic |
| GCAGGCCTTCCTTCCAATGC+TGG | 0.454814 | 3_4:-46849928 | None:intergenic |
| TGATGAAGTGAAAATGTGTT+TGG | 0.457552 | 3_4:+46850322 | Msa0503560:three_prime_UTR |
| ATCGTCATTCAAAACAAACT+TGG | 0.462988 | 3_4:+46845490 | Msa0503560:CDS |
| TGAAACAGGCGAACCAGCAT+TGG | 0.463366 | 3_4:+46849915 | Msa0503560:CDS |
| TGCTTAGCAAAAGATATAAG+TGG | 0.467290 | 3_4:-46846968 | None:intergenic |
| ATCTCCTGTTGGTTTGGCAC+CGG | 0.473422 | 3_4:-46848039 | None:intergenic |
| GTTCTAACTGTGAAATGCTC+TGG | 0.475307 | 3_4:-46849721 | None:intergenic |
| AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3_4:+46848709 | Msa0503560:CDS |
| TATGAATCGTACTTGGGAAC+CGG | 0.477276 | 3_4:+46848020 | Msa0503560:CDS |
| GTTCCCAAGTACGATTCATA+AGG | 0.479991 | 3_4:-46848017 | None:intergenic |
| GGAACCGGTGCCAAACCAAC+AGG | 0.484101 | 3_4:+46848035 | Msa0503560:CDS |
| ATATACCTTAGAAGGAAAAT+GGG | 0.484154 | 3_4:+46843510 | Msa0503560:CDS |
| TTTGTATACATCTATACCCT+TGG | 0.487312 | 3_4:+46847652 | Msa0503560:CDS |
| AGTGCCAAAGACAAGTGATA+AGG | 0.491616 | 3_4:+46850278 | Msa0503560:CDS |
| TGTCACTTCGCTATTGCTCA+TGG | 0.495684 | 3_4:-46843147 | None:intergenic |
| CATGAAGACCTGGTAACAAA+AGG | 0.500056 | 3_4:+46849787 | Msa0503560:CDS |
| GTTCCACTCACATCTCCTGT+TGG | 0.501336 | 3_4:-46848050 | None:intergenic |
| GGAAGTTGTTAAAAGTCTTG+TGG | 0.501379 | 3_4:+46843636 | Msa0503560:CDS |
| TTCCATATACGATCTTAACT+TGG | 0.503043 | 3_4:+46848757 | Msa0503560:CDS |
| GTATTCTTCACTGTGCCATC+CGG | 0.504088 | 3_4:+46843962 | Msa0503560:CDS |
| CACATGGATCAGTATACTAA+AGG | 0.504814 | 3_4:+46849691 | Msa0503560:intron |
| TATAAACTACGTACCTTCAC+CGG | 0.506207 | 3_4:-46843195 | None:intergenic |
| ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3_4:+46847010 | Msa0503560:CDS |
| TTCGAGAAGTGAGTATGGAC+AGG | 0.510529 | 3_4:-46850017 | None:intergenic |
| CCACCACAAACACTCCTACC+TGG | 0.511251 | 3_4:-46843895 | None:intergenic |
| CTAAGAAGATCAATGTAAAG+TGG | 0.514162 | 3_4:-46850240 | None:intergenic |
| GGAAAGTGCAGCAAGGAACA+AGG | 0.519439 | 3_4:-46843833 | None:intergenic |
| CTTGATGCTGCAAGGTGCAA+AGG | 0.522226 | 3_4:-46843721 | None:intergenic |
| TGAATCCTCTTGATGCTGCA+AGG | 0.522236 | 3_4:-46843729 | None:intergenic |
| AACAAAGATGACAAAACAGC+TGG | 0.522635 | 3_4:+46849745 | Msa0503560:CDS |
| CCTTAATGCCTCAACGACAT+TGG | 0.524122 | 3_4:-46848822 | None:intergenic |
| TCCTACCTGGTTTAAAGTTG+AGG | 0.527312 | 3_4:-46843882 | None:intergenic |
| AAAGATCTTATTCGAAGCAA+TGG | 0.536817 | 3_4:+46843934 | Msa0503560:CDS |
| GCGAACCAGCATTGGAAGGA+AGG | 0.537330 | 3_4:+46849923 | Msa0503560:CDS |
| ATGAAGCAATCGAATATTGT+CGG | 0.541968 | 3_4:+46846855 | Msa0503560:CDS |
| GCTATTGCATACAAAGTCAC+AGG | 0.544603 | 3_4:-46850210 | None:intergenic |
| CAAGAAATCACATGAAGACC+TGG | 0.549895 | 3_4:+46849777 | Msa0503560:CDS |
| TGGTAACAAAAGGTAGTGAA+TGG | 0.552482 | 3_4:+46849797 | Msa0503560:CDS |
| TTAAGATCGTATATGGAACT+TGG | 0.559476 | 3_4:-46848752 | None:intergenic |
| ATATTTGATGATCTAATCCA+AGG | 0.560273 | 3_4:+46848875 | Msa0503560:CDS |
| ATTTCAGAATTGATATGCCA+AGG | 0.560690 | 3_4:+46850052 | Msa0503560:CDS |
| TCATAGGAAAAGATGGTGAA+AGG | 0.561859 | 3_4:+46843770 | Msa0503560:CDS |
| TATATGCCACATCATTTGCA+AGG | 0.563049 | 3_4:-46848975 | None:intergenic |
| TACCAACTCCTGAAAGGCCA+AGG | 0.563628 | 3_4:-46847669 | None:intergenic |
| TTGCACCTTGCAGCATCAAG+AGG | 0.564363 | 3_4:+46843724 | Msa0503560:CDS |
| AATCCTTATGAATCGTACTT+GGG | 0.567556 | 3_4:+46848014 | Msa0503560:CDS |
| CTACACGTGGCAGTAAATGA+TGG | 0.568764 | 3_4:+46843607 | Msa0503560:CDS |
| GTCTCCAGAAGACAAGCTAA+AGG | 0.569523 | 3_4:+46843486 | Msa0503560:CDS |
| GTGAGATGGGAGAAAGAAAG+TGG | 0.569886 | 3_4:-46843068 | None:intergenic |
| TATTTGATGATCTAATCCAA+GGG | 0.570566 | 3_4:+46848876 | Msa0503560:CDS |
| AAGTATACTGCTCCAAACAT+AGG | 0.570656 | 3_4:-46850369 | None:intergenic |
| AATCTTAAGTCACAATAATG+AGG | 0.571757 | 3_4:+46843663 | Msa0503560:CDS |
| AGCAAGTGACTGAATAAATG+AGG | 0.575232 | 3_4:-46850185 | None:intergenic |
| GCTACATCAAGCACTGTACC+AGG | 0.575420 | 3_4:+46849880 | Msa0503560:CDS |
| ATATGTATGATGTTGGATTG+TGG | 0.575658 | 3_4:+46850421 | Msa0503560:three_prime_UTR |
| AAAGCAAATGCATCAAATGC+AGG | 0.578955 | 3_4:-46849946 | None:intergenic |
| TGAAACACGGATGGAATTGA+AGG | 0.579885 | 3_4:-46843104 | None:intergenic |
| ATATGGAAGAGAAAGACAAA+AGG | 0.583591 | 3_4:+46847569 | Msa0503560:CDS |
| CTATCAAAAGGTATACCTGC+GGG | 0.589963 | 3_4:+46846818 | Msa0503560:intron |
| GTGCTGCCTTGCAAATGATG+TGG | 0.592481 | 3_4:+46848969 | Msa0503560:CDS |
| GACACTTACCAACTCCTGAA+AGG | 0.593684 | 3_4:-46847675 | None:intergenic |
| GAATGTATCATAGGAAAAGA+TGG | 0.595958 | 3_4:+46843763 | Msa0503560:CDS |
| GACACCACACACACCGGTGA+AGG | 0.597563 | 3_4:+46843182 | Msa0503560:CDS |
| CTTCAATGTTGAAACACGGA+TGG | 0.599001 | 3_4:-46843113 | None:intergenic |
| TACAGTGCTTGATGTAGCGA+AGG | 0.603317 | 3_4:-46849875 | None:intergenic |
| CTAGTAGCAAGAAGTTTGAG+AGG | 0.605951 | 3_4:-46845520 | None:intergenic |
| CGTACCTTCACCGGTGTGTG+TGG | 0.611350 | 3_4:-46843186 | None:intergenic |
| ACAGGCGAACCAGCATTGGA+AGG | 0.613779 | 3_4:+46849919 | Msa0503560:CDS |
| GAAAGTGCAGCAAGGAACAA+GGG | 0.614655 | 3_4:-46843832 | None:intergenic |
| TCAACGTTTAGGTCTCCCGC+AGG | 0.614666 | 3_4:-46846833 | None:intergenic |
| ATAGAGATCAACAAAAGTAG+AGG | 0.623346 | 3_4:+46843577 | Msa0503560:CDS |
| TGCCAAAGACAAGTGATAAG+GGG | 0.626830 | 3_4:+46850280 | Msa0503560:CDS |
| TGATGATCTAATCCAAGGGG+TGG | 0.632793 | 3_4:+46848880 | Msa0503560:CDS |
| GCGGATACAAGATGATATGG+TGG | 0.635479 | 3_4:+46845560 | Msa0503560:CDS |
| CAGGAGAACCAATGTCGTTG+AGG | 0.637648 | 3_4:+46848814 | Msa0503560:CDS |
| CTATTGCTCATGGTGGTCTG+TGG | 0.637714 | 3_4:-46843137 | None:intergenic |
| TATCTCCTCAACTTTAAACC+AGG | 0.639197 | 3_4:+46843877 | Msa0503560:CDS |
| GGCAGTAAATGATGGCAATG+AGG | 0.641440 | 3_4:+46843615 | Msa0503560:CDS |
| TGATGTAGCGAAGGAAACAC+CGG | 0.642955 | 3_4:-46849866 | None:intergenic |
| GCCAAAGACAAGTGATAAGG+GGG | 0.646133 | 3_4:+46850281 | Msa0503560:CDS |
| CTTAAGTCACAATAATGAGG+AGG | 0.647920 | 3_4:+46843666 | Msa0503560:CDS |
| AGTCGTGAAATTATACAAGT+CGG | 0.648380 | 3_4:+46843537 | Msa0503560:CDS |
| AGGCCCTCAGCCTTCAAAAG+CGG | 0.649354 | 3_4:+46845541 | Msa0503560:CDS |
| TAGCGAAGGAAACACCGGCA+AGG | 0.651641 | 3_4:-46849861 | None:intergenic |
| TTTGCCAGGAAAGTGCAGCA+AGG | 0.652438 | 3_4:-46843840 | None:intergenic |
| ATTTATGACACCACACACAC+CGG | 0.652754 | 3_4:+46843176 | Msa0503560:CDS |
| ACCAACTCCTGAAAGGCCAA+GGG | 0.656443 | 3_4:-46847668 | None:intergenic |
| CTATTGCATACAAAGTCACA+GGG | 0.657703 | 3_4:-46850209 | None:intergenic |
| CACTTCGCTATTGCTCATGG+TGG | 0.668397 | 3_4:-46843144 | None:intergenic |
| TAGAGGAACAGCACTACACG+TGG | 0.671680 | 3_4:+46843594 | Msa0503560:CDS |
| AAACCAACAGGAGATGTGAG+TGG | 0.671744 | 3_4:+46848047 | Msa0503560:CDS |
| ACTATCAAAAGGTATACCTG+CGG | 0.692041 | 3_4:+46846817 | Msa0503560:intron |
| TGCAGGAGATAACAACAATG+AGG | 0.695234 | 3_4:+46848610 | Msa0503560:intron |
| GAAACACGGATGGAATTGAA+GGG | 0.698742 | 3_4:-46843103 | None:intergenic |
| TCCTCAACTTTAAACCAGGT+AGG | 0.704645 | 3_4:+46843881 | Msa0503560:CDS |
| CCAGGTAGGAGTGTTTGTGG+TGG | 0.704915 | 3_4:+46843895 | Msa0503560:CDS |
| ATTTGATGATCTAATCCAAG+GGG | 0.710471 | 3_4:+46848877 | Msa0503560:CDS |
| TGGTCTTCAATGTTGAAACA+CGG | 0.748975 | 3_4:-46843117 | None:intergenic |
| ACATCAAGCACTGTACCAGG+CGG | 0.758516 | 3_4:+46849883 | Msa0503560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATAAAAAAAT+TGG | - | chr3_4:46846674-46846693 | None:intergenic | 0.0% |
| !!! | ATATTTAATTATTTACGTTT+TGG | + | chr3_4:46844362-46844381 | Msa0503560:intron | 10.0% |
| !! | AATATACATAAATATTAGTA+GGG | - | chr3_4:46845425-46845444 | None:intergenic | 10.0% |
| !!! | TTTTTAAAACACTATATATT+TGG | + | chr3_4:46845857-46845876 | Msa0503560:intron | 10.0% |
| !! | TAAAAAATAAAAAAATTGGT+GGG | - | chr3_4:46846670-46846689 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAAATTGG+TGG | - | chr3_4:46846671-46846690 | None:intergenic | 10.0% |
| !!! | ATTAAAACTTTTTTTTTGAA+GGG | + | chr3_4:46848234-46848253 | Msa0503560:intron | 10.0% |
| !! | TAAAAATACAATGATATATT+TGG | - | chr3_4:46848293-46848312 | None:intergenic | 10.0% |
| !!! | TGTAATATTGATTTAATTTT+TGG | - | chr3_4:46848559-46848578 | None:intergenic | 10.0% |
| !!! | TATTAGTGATTAATTTTCAT+TGG | - | chr3_4:46843228-46843247 | None:intergenic | 15.0% |
| !! | TATCAAATAGTAGTATTATT+CGG | - | chr3_4:46843273-46843292 | None:intergenic | 15.0% |
| !!! | TTTTAATCTGTAATAAGTTA+TGG | - | chr3_4:46844446-46844465 | None:intergenic | 15.0% |
| !! | TTTATGAATGTGTAAAATAT+TGG | - | chr3_4:46844901-46844920 | None:intergenic | 15.0% |
| !! | AGAAAGGATAAAAAAAATAT+AGG | + | chr3_4:46845162-46845181 | Msa0503560:intron | 15.0% |
| !! | TTAGTATAAATATTGTATTG+AGG | - | chr3_4:46845364-46845383 | None:intergenic | 15.0% |
| !! | CAATATACATAAATATTAGT+AGG | - | chr3_4:46845426-46845445 | None:intergenic | 15.0% |
| !! | AAAAAATAAAAAAATTGGTG+GGG | - | chr3_4:46846669-46846688 | None:intergenic | 15.0% |
| !! | ATATATCTAATGAACAAAAA+AGG | - | chr3_4:46846751-46846770 | None:intergenic | 15.0% |
| !!! | ATATTTGATTTAGTCTATTT+TGG | - | chr3_4:46847336-46847355 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTCTTAAAATGA+GGG | - | chr3_4:46847450-46847469 | None:intergenic | 15.0% |
| !!! | TGTTTTCAAAATTTGTTTAA+AGG | + | chr3_4:46847894-46847913 | Msa0503560:intron | 15.0% |
| !!! | GTTTTCAAAATTTGTTTAAA+GGG | + | chr3_4:46847895-46847914 | Msa0503560:intron | 15.0% |
| !!! | TTTTCAAAATTTGTTTAAAG+GGG | + | chr3_4:46847896-46847915 | Msa0503560:intron | 15.0% |
| !!! | CATTAAAACTTTTTTTTTGA+AGG | + | chr3_4:46848233-46848252 | Msa0503560:intron | 15.0% |
| !!! | TTATTATTTTAAATCAAGGA+CGG | + | chr3_4:46848319-46848338 | Msa0503560:intron | 15.0% |
| !!! | TATTTATTTTCTTTCAACTT+AGG | + | chr3_4:46849011-46849030 | Msa0503560:intron | 15.0% |
| !!! | TTTTGAAATATGCATTATTT+TGG | - | chr3_4:46849084-46849103 | None:intergenic | 15.0% |
| !! | TATATTTATATGTATGATGT+TGG | + | chr3_4:46850414-46850433 | Msa0503560:three_prime_UTR | 15.0% |
| !!! | TTTTTCATTCTTACATGTAA+GGG | - | chr3_4:46843692-46843711 | None:intergenic | 20.0% |
| !!! | ATTGACATTGATAACAATAA+TGG | + | chr3_4:46843802-46843821 | Msa0503560:CDS | 20.0% |
| !!! | CATATTGTGAATTTTGTATT+TGG | + | chr3_4:46844037-46844056 | Msa0503560:intron | 20.0% |
| !! | TGGTTTATTAATAAATTGCA+TGG | + | chr3_4:46844382-46844401 | Msa0503560:intron | 20.0% |
| !! | AGATTAAAAGTTGAATATGA+TGG | + | chr3_4:46844457-46844476 | Msa0503560:intron | 20.0% |
| !! | GATTAAAAGTTGAATATGAT+GGG | + | chr3_4:46844458-46844477 | Msa0503560:intron | 20.0% |
| !! | GACTTATGTATAATTACTTA+AGG | - | chr3_4:46844588-46844607 | None:intergenic | 20.0% |
| !!! | TTATTGATTTATAAACGATG+TGG | + | chr3_4:46844630-46844649 | Msa0503560:intron | 20.0% |
| !!! | TATTGATTTATAAACGATGT+GGG | + | chr3_4:46844631-46844650 | Msa0503560:intron | 20.0% |
| !!! | TAGTAATTTAGAATCAGTTT+TGG | - | chr3_4:46845217-46845236 | None:intergenic | 20.0% |
| !! | CATTAAAAACAACAATTCTT+TGG | + | chr3_4:46845303-46845322 | Msa0503560:intron | 20.0% |
| !!! | AATTTTGATTAATGTGAAGT+TGG | + | chr3_4:46846042-46846061 | Msa0503560:intron | 20.0% |
| !!! | TTATTGACAATTGTTTGTTA+TGG | + | chr3_4:46846133-46846152 | Msa0503560:intron | 20.0% |
| !!! | TATTGACAATTGTTTGTTAT+GGG | + | chr3_4:46846134-46846153 | Msa0503560:intron | 20.0% |
| !!! | AACTAATAACTGTTTTTTAG+TGG | + | chr3_4:46846235-46846254 | Msa0503560:intron | 20.0% |
| !!! | ATTTATTGGTTGATTAAATG+AGG | + | chr3_4:46846414-46846433 | Msa0503560:intron | 20.0% |
| !! | TTCCAAAACGATATTTAAAA+AGG | + | chr3_4:46846490-46846509 | Msa0503560:intron | 20.0% |
| !! | TATAATTTAACTACTTCCTT+CGG | - | chr3_4:46846517-46846536 | None:intergenic | 20.0% |
| !! | TTTATATTATGACAAAGACA+AGG | - | chr3_4:46846575-46846594 | None:intergenic | 20.0% |
| !!! | TATTTTCTTAGAAGATTTTG+AGG | + | chr3_4:46847133-46847152 | Msa0503560:intron | 20.0% |
| !!! | CCTTTTTTATTCTTAAAATG+AGG | - | chr3_4:46847451-46847470 | None:intergenic | 20.0% |
| !!! | CCTCATTTTAAGAATAAAAA+AGG | + | chr3_4:46847448-46847467 | Msa0503560:intron | 20.0% |
| !! | ATGAAATGTCCTTAATTAAA+AGG | - | chr3_4:46848421-46848440 | None:intergenic | 20.0% |
| !!! | TAAGTTTTGCTAAAATCTTT+GGG | - | chr3_4:46848637-46848656 | None:intergenic | 20.0% |
| !!! | TTAAGTTTTGCTAAAATCTT+TGG | - | chr3_4:46848638-46848657 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGGACAATAAAA+TGG | + | chr3_4:46848850-46848869 | Msa0503560:CDS | 20.0% |
| !! | TTATAAAGAAAAATATCCTC+CGG | - | chr3_4:46849293-46849312 | None:intergenic | 20.0% |
| ! | AATATACCTTAGAAGGAAAA+TGG | + | chr3_4:46843509-46843528 | Msa0503560:CDS | 25.0% |
| ! | ATATACCTTAGAAGGAAAAT+GGG | + | chr3_4:46843510-46843529 | Msa0503560:CDS | 25.0% |
| ! | AATCTTAAGTCACAATAATG+AGG | + | chr3_4:46843663-46843682 | Msa0503560:CDS | 25.0% |
| !!! | CTTTTTCATTCTTACATGTA+AGG | - | chr3_4:46843693-46843712 | None:intergenic | 25.0% |
| ! | CTTACATGTAAGAATGAAAA+AGG | + | chr3_4:46843691-46843710 | Msa0503560:CDS | 25.0% |
| ! | GATATATGTGAATGTATCAT+AGG | + | chr3_4:46843754-46843773 | Msa0503560:CDS | 25.0% |
| ! | AATTACCAAAAAATTCTCTC+CGG | - | chr3_4:46843984-46844003 | None:intergenic | 25.0% |
| ! | GAATTCATGAATTTCTATGT+CGG | + | chr3_4:46844272-46844291 | Msa0503560:intron | 25.0% |
| ! | ATAATGCTCAAATAAGCTAA+TGG | + | chr3_4:46845064-46845083 | Msa0503560:intron | 25.0% |
| ! | TATGTATATTGCAACAGATT+TGG | + | chr3_4:46845435-46845454 | Msa0503560:intron | 25.0% |
| ! | AACTCCTTTACTCAAAATTA+GGG | - | chr3_4:46845999-46846018 | None:intergenic | 25.0% |
| !!! | TAATAACTGTTTTTTAGTGG+TGG | + | chr3_4:46846238-46846257 | Msa0503560:intron | 25.0% |
| ! | GACAATGCATAATATATTCA+AGG | - | chr3_4:46846283-46846302 | None:intergenic | 25.0% |
| ! | TGATTAAATGAGGATATACT+AGG | + | chr3_4:46846424-46846443 | Msa0503560:intron | 25.0% |
| ! | GGAATAGTAACACTAAATTA+AGG | - | chr3_4:46846474-46846493 | None:intergenic | 25.0% |
| !! | GTCCTTTTTAAATATCGTTT+TGG | - | chr3_4:46846495-46846514 | None:intergenic | 25.0% |
| !! | TTCTTTGGACATAATTTTTG+TGG | - | chr3_4:46846899-46846918 | None:intergenic | 25.0% |
| !!! | GTCGTGATATTTTTTCTATT+TGG | + | chr3_4:46847064-46847083 | Msa0503560:intron | 25.0% |
| !!! | ATATTTTTTCTATTTGGCCA+TGG | + | chr3_4:46847070-46847089 | Msa0503560:intron | 25.0% |
| !!! | AAGATTTTGAGGAATAGATA+AGG | + | chr3_4:46847144-46847163 | Msa0503560:intron | 25.0% |
| ! | GGCTATTACAATGATTAAAA+TGG | + | chr3_4:46847165-46847184 | Msa0503560:intron | 25.0% |
| !!! | TTTGGATTTTTCAAAATCCA+AGG | - | chr3_4:46847318-46847337 | None:intergenic | 25.0% |
| ! | AAATATAAAGTGAAGCCATT+TGG | + | chr3_4:46847350-46847369 | Msa0503560:intron | 25.0% |
| ! | CTCAGAAAAAATTTATGCTA+TGG | - | chr3_4:46847408-46847427 | None:intergenic | 25.0% |
| !!! | TAAATTTTTTCTGAGAGACA+TGG | + | chr3_4:46847413-46847432 | Msa0503560:intron | 25.0% |
| ! | TAAGAATAAAAAAGGCAGTA+TGG | + | chr3_4:46847456-46847475 | Msa0503560:intron | 25.0% |
| !!! | AAATTAAGCTATGTTTTTGC+AGG | + | chr3_4:46847538-46847557 | Msa0503560:intron | 25.0% |
| !! | TTTTGCAGGATCTAAAAATA+TGG | + | chr3_4:46847552-46847571 | Msa0503560:intron | 25.0% |
| ! | ATCCCAAATGAAAAATGTTT+GGG | - | chr3_4:46847845-46847864 | None:intergenic | 25.0% |
| ! | CCATAAAACAATAACAATCA+AGG | - | chr3_4:46847873-46847892 | None:intergenic | 25.0% |
| !!! | CCTTGATTGTTATTGTTTTA+TGG | + | chr3_4:46847870-46847889 | Msa0503560:intron | 25.0% |
| ! | TCAACTCTTGAACATATTTA+TGG | + | chr3_4:46847962-46847981 | Msa0503560:CDS | 25.0% |
| ! | GTCTTAAATATGAGTGAAAT+TGG | - | chr3_4:46848160-46848179 | None:intergenic | 25.0% |
| !! | ATTTCACTCATATTTAAGAC+TGG | + | chr3_4:46848160-46848179 | Msa0503560:intron | 25.0% |
| !!! | GATTAACGACCTTTTAATTA+AGG | + | chr3_4:46848409-46848428 | Msa0503560:intron | 25.0% |
| ! | ATAACATAAATGAAACTTGC+AGG | + | chr3_4:46848593-46848612 | Msa0503560:intron | 25.0% |
| !! | TAAACATGAGAAAGCAATTT+TGG | + | chr3_4:46848655-46848674 | Msa0503560:CDS | 25.0% |
| !!! | ATTAAGGAAACGTTTTGAAA+AGG | + | chr3_4:46848838-46848857 | Msa0503560:CDS | 25.0% |
| !! | ATATTTGATGATCTAATCCA+AGG | + | chr3_4:46848875-46848894 | Msa0503560:CDS | 25.0% |
| !! | TATTTGATGATCTAATCCAA+GGG | + | chr3_4:46848876-46848895 | Msa0503560:CDS | 25.0% |
| ! | AAATGATGTGGCATATAAAA+TGG | + | chr3_4:46848981-46849000 | Msa0503560:CDS | 25.0% |
| ! | TGTAAATGTGTTTGCAATTT+GGG | + | chr3_4:46849161-46849180 | Msa0503560:intron | 25.0% |
| !!! | GTCTCTGGTATTTTTTTAAT+GGG | - | chr3_4:46849265-46849284 | None:intergenic | 25.0% |
| !!! | TGTCTCTGGTATTTTTTTAA+TGG | - | chr3_4:46849266-46849285 | None:intergenic | 25.0% |
| ! | TATAAAGAAAAATATCCTCC+GGG | - | chr3_4:46849292-46849311 | None:intergenic | 25.0% |
| !!! | CATATCAATTCTGAAATCTT+TGG | - | chr3_4:46850049-46850068 | None:intergenic | 25.0% |
| ! | TTTGGTCAATAAGAAAGAAA+TGG | - | chr3_4:46850146-46850165 | None:intergenic | 25.0% |
| GTGAAAAAACAATGTGAGAT+GGG | - | chr3_4:46843084-46843103 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCAAACA+AGG | + | chr3_4:46843425-46843444 | Msa0503560:intron | 30.0% | |
| GATTAGAGTTATTCCTTGTT+TGG | - | chr3_4:46843441-46843460 | None:intergenic | 30.0% | |
| CTAAAGGAATATACCTTAGA+AGG | + | chr3_4:46843502-46843521 | Msa0503560:CDS | 30.0% | |
| AGTCGTGAAATTATACAAGT+CGG | + | chr3_4:46843537-46843556 | Msa0503560:CDS | 30.0% | |
| ATAGAGATCAACAAAAGTAG+AGG | + | chr3_4:46843577-46843596 | Msa0503560:CDS | 30.0% | |
| GAATGTATCATAGGAAAAGA+TGG | + | chr3_4:46843763-46843782 | Msa0503560:CDS | 30.0% | |
| AAAGATCTTATTCGAAGCAA+TGG | + | chr3_4:46843934-46843953 | Msa0503560:CDS | 30.0% | |
| TTTCAAATGTGTGCAATGTT+TGG | + | chr3_4:46844296-46844315 | Msa0503560:intron | 30.0% | |
| ! | TAAAAGTTGAATATGATGGG+AGG | + | chr3_4:46844461-46844480 | Msa0503560:intron | 30.0% |
| ! | CAACAACAAACCAATGTTTT+AGG | + | chr3_4:46844526-46844545 | Msa0503560:intron | 30.0% |
| CTCTTTCAATCCTAAAACAT+TGG | - | chr3_4:46844539-46844558 | None:intergenic | 30.0% | |
| GTTGGATGTGTTATAAAAAG+TGG | - | chr3_4:46844709-46844728 | None:intergenic | 30.0% | |
| AGAAGTAGAGAATATTCTGT+TGG | - | chr3_4:46844956-46844975 | None:intergenic | 30.0% | |
| ATAATGCTCAAATAAGCTCA+TGG | + | chr3_4:46844980-46844999 | Msa0503560:intron | 30.0% | |
| !! | ATGGTTTGTTTAACAACCTT+AGG | + | chr3_4:46844999-46845018 | Msa0503560:intron | 30.0% |
| !! | TGGTTTGTTTAACAACCTTA+GGG | + | chr3_4:46845000-46845019 | Msa0503560:intron | 30.0% |
| !! | ATGGTTTGTTTAACAACCTT+AGG | + | chr3_4:46844999-46845018 | Msa0503560:intron | 30.0% |
| !! | TGGTTTGTTTAACAACCTTA+GGG | + | chr3_4:46845000-46845019 | Msa0503560:intron | 30.0% |
| !! | ATGGTTTGTTTAACAACCTT+AGG | + | chr3_4:46844999-46845018 | Msa0503560:intron | 30.0% |
| TATCCTTTCTTAATTGCCTA+AGG | - | chr3_4:46845152-46845171 | None:intergenic | 30.0% | |
| TTTCTTTAACTAGTGCTCTA+AGG | + | chr3_4:46845384-46845403 | Msa0503560:intron | 30.0% | |
| ! | TTTTGAATGACGATAAGATC+AGG | - | chr3_4:46845484-46845503 | None:intergenic | 30.0% |
| ATCGTCATTCAAAACAAACT+TGG | + | chr3_4:46845490-46845509 | Msa0503560:CDS | 30.0% | |
| TTCTTAGTTACCATGATGTT+TGG | + | chr3_4:46845694-46845713 | Msa0503560:intron | 30.0% | |
| ATATACCTAACCAAACATCA+TGG | - | chr3_4:46845707-46845726 | None:intergenic | 30.0% | |
| GAACTCCTTTACTCAAAATT+AGG | - | chr3_4:46846000-46846019 | None:intergenic | 30.0% | |
| TGCATAATATATTCAAGGTC+CGG | - | chr3_4:46846278-46846297 | None:intergenic | 30.0% | |
| GAGGATATACTAGGATTAAA+AGG | + | chr3_4:46846433-46846452 | Msa0503560:intron | 30.0% | |
| GTAACACTAAATTAAGGAAG+TGG | - | chr3_4:46846468-46846487 | None:intergenic | 30.0% | |
| AACCAGTATCTTATGAAGAA+CGG | + | chr3_4:46846538-46846557 | Msa0503560:intron | 30.0% | |
| ! | CTTATCCCATTTTCCTTTTA+AGG | + | chr3_4:46846629-46846648 | Msa0503560:intron | 30.0% |
| ! | GCATCTTATTTCATCTTTAG+AGG | - | chr3_4:46846707-46846726 | None:intergenic | 30.0% |
| TGTTATGACACACTATCAAA+AGG | + | chr3_4:46846806-46846825 | Msa0503560:intron | 30.0% | |
| ATGAAGCAATCGAATATTGT+CGG | + | chr3_4:46846855-46846874 | Msa0503560:CDS | 30.0% | |
| TGCTTAGCAAAAGATATAAG+TGG | - | chr3_4:46846971-46846990 | None:intergenic | 30.0% | |
| !! | GATTTTTCAAAATCCAAGGT+AGG | - | chr3_4:46847314-46847333 | None:intergenic | 30.0% |
| ATATGGAAGAGAAAGACAAA+AGG | + | chr3_4:46847569-46847588 | Msa0503560:CDS | 30.0% | |
| TTTGTATACATCTATACCCT+TGG | + | chr3_4:46847652-46847671 | Msa0503560:CDS | 30.0% | |
| TTTAGATAACGAGATCAACT+AGG | - | chr3_4:46847705-46847724 | None:intergenic | 30.0% | |
| ATCTTACTTGAACACAACAT+CGG | + | chr3_4:46847729-46847748 | Msa0503560:intron | 30.0% | |
| GATCCCAAATGAAAAATGTT+TGG | - | chr3_4:46847846-46847865 | None:intergenic | 30.0% | |
| GGGTTGAAGAAATTAAAAAG+AGG | + | chr3_4:46847916-46847935 | Msa0503560:CDS | 30.0% | |
| !! | ATGGAGAATCGTATTTTTGA+AGG | + | chr3_4:46847981-46848000 | Msa0503560:CDS | 30.0% |
| AAATCCTTATGAATCGTACT+TGG | + | chr3_4:46848013-46848032 | Msa0503560:CDS | 30.0% | |
| AATCCTTATGAATCGTACTT+GGG | + | chr3_4:46848014-46848033 | Msa0503560:CDS | 30.0% | |
| ! | TTTGATTTCAACCCAAATCA+AGG | + | chr3_4:46848083-46848102 | Msa0503560:CDS | 30.0% |
| ATGATCAGATACCTTGATTT+GGG | - | chr3_4:46848097-46848116 | None:intergenic | 30.0% | |
| AATGATCAGATACCTTGATT+TGG | - | chr3_4:46848098-46848117 | None:intergenic | 30.0% | |
| AATTGGTCAAAGAAAGTTGA+TGG | - | chr3_4:46848143-46848162 | None:intergenic | 30.0% | |
| ! | CATTTCGATTTGATCATAAG+TGG | + | chr3_4:46848190-46848209 | Msa0503560:intron | 30.0% |
| AACGGTTGTAAAACAATCAT+TGG | - | chr3_4:46848373-46848392 | None:intergenic | 30.0% | |
| !! | GATTGTTTTACAACCGTTTT+TGG | + | chr3_4:46848375-46848394 | Msa0503560:intron | 30.0% |
| TAGTAACATGGAGATCAATT+TGG | - | chr3_4:46848502-46848521 | None:intergenic | 30.0% | |
| AAATTGATCTCCATGTTACT+AGG | + | chr3_4:46848501-46848520 | Msa0503560:intron | 30.0% | |
| AAATGGCATAGTTGAAATAG+TGG | + | chr3_4:46848709-46848728 | Msa0503560:CDS | 30.0% | |
| TTAAGATCGTATATGGAACT+TGG | - | chr3_4:46848755-46848774 | None:intergenic | 30.0% | |
| TTCCATATACGATCTTAACT+TGG | + | chr3_4:46848757-46848776 | Msa0503560:CDS | 30.0% | |
| TTCCAAGTTAAGATCGTATA+TGG | - | chr3_4:46848762-46848781 | None:intergenic | 30.0% | |
| ! | ATTTGATGATCTAATCCAAG+GGG | + | chr3_4:46848877-46848896 | Msa0503560:CDS | 30.0% |
| ! | CATCAAATTTTAAACTGCGA+CGG | - | chr3_4:46849039-46849058 | None:intergenic | 30.0% |
| ATTTACAGTCACAATATCAG+TGG | - | chr3_4:46849148-46849167 | None:intergenic | 30.0% | |
| CTGTAAATGTGTTTGCAATT+TGG | + | chr3_4:46849160-46849179 | Msa0503560:intron | 30.0% | |
| !! | TATTGATTGGTTCGGATATT+GGG | - | chr3_4:46849203-46849222 | None:intergenic | 30.0% |
| ! | TCAAAGACTATTGATTGGTT+CGG | - | chr3_4:46849211-46849230 | None:intergenic | 30.0% |
| !! | TTTTAATGGGTCTAACATTG+TGG | - | chr3_4:46849252-46849271 | None:intergenic | 30.0% |
| ! | GGGGTTATTAGTGTATTTTT+CGG | + | chr3_4:46849462-46849481 | Msa0503560:intron | 30.0% |
| ! | GGGTTATTAGTGTATTTTTC+GGG | + | chr3_4:46849463-46849482 | Msa0503560:intron | 30.0% |
| GACAATCATTTCAACTTTCA+AGG | - | chr3_4:46849613-46849632 | None:intergenic | 30.0% | |
| TTTGCTTTGTCTTCAGTAAT+TGG | + | chr3_4:46849961-46849980 | Msa0503560:CDS | 30.0% | |
| ATTTCAGAATTGATATGCCA+AGG | + | chr3_4:46850052-46850071 | Msa0503560:CDS | 30.0% | |
| ! | ACACAATGTGCTTGTATTTT+TGG | - | chr3_4:46850164-46850183 | None:intergenic | 30.0% |
| CTAAGAAGATCAATGTAAAG+TGG | - | chr3_4:46850243-46850262 | None:intergenic | 30.0% | |
| TGATGAAGTGAAAATGTGTT+TGG | + | chr3_4:46850322-46850341 | Msa0503560:three_prime_UTR | 30.0% | |
| ATAACAGTACTACCTATGTT+TGG | + | chr3_4:46850357-46850376 | Msa0503560:three_prime_UTR | 30.0% | |
| ATATGTATGATGTTGGATTG+TGG | + | chr3_4:46850421-46850440 | Msa0503560:three_prime_UTR | 30.0% | |
| GGTGAAAAAACAATGTGAGA+TGG | - | chr3_4:46843085-46843104 | None:intergenic | 35.0% | |
| TGGTCTTCAATGTTGAAACA+CGG | - | chr3_4:46843120-46843139 | None:intergenic | 35.0% | |
| TATAAACTACGTACCTTCAC+CGG | - | chr3_4:46843198-46843217 | None:intergenic | 35.0% | |
| !! | TATTCCTTTAGCTTGTCTTC+TGG | - | chr3_4:46843493-46843512 | None:intergenic | 35.0% |
| ! | TTCATCCCATTTTCCTTCTA+AGG | - | chr3_4:46843518-46843537 | None:intergenic | 35.0% |
| GGAAGTTGTTAAAAGTCTTG+TGG | + | chr3_4:46843636-46843655 | Msa0503560:CDS | 35.0% | |
| CTTAAGTCACAATAATGAGG+AGG | + | chr3_4:46843666-46843685 | Msa0503560:CDS | 35.0% | |
| TCATAGGAAAAGATGGTGAA+AGG | + | chr3_4:46843770-46843789 | Msa0503560:CDS | 35.0% | |
| TATCTCCTCAACTTTAAACC+AGG | + | chr3_4:46843877-46843896 | Msa0503560:CDS | 35.0% | |
| TTGCATGGAAATGAGTGTTA+AGG | + | chr3_4:46844397-46844416 | Msa0503560:intron | 35.0% | |
| CACTTGATGGAGATATTGTT+GGG | - | chr3_4:46844679-46844698 | None:intergenic | 35.0% | |
| ACACTTGATGGAGATATTGT+TGG | - | chr3_4:46844680-46844699 | None:intergenic | 35.0% | |
| AAGTGGAAAATCACACTTGA+TGG | - | chr3_4:46844692-46844711 | None:intergenic | 35.0% | |
| AACAAGTGGTATTAGAGTCT+TGG | - | chr3_4:46844755-46844774 | None:intergenic | 35.0% | |
| AGAAGTGACTCATATACTTG+AGG | - | chr3_4:46844869-46844888 | None:intergenic | 35.0% | |
| ! | TTAACAACCTTAGGGCATTT+AGG | + | chr3_4:46845008-46845027 | Msa0503560:intron | 35.0% |
| ! | TTAACAACCTTAGGGCATTT+AGG | + | chr3_4:46845008-46845027 | Msa0503560:intron | 35.0% |
| ! | GAAGTGCTCAAATAAGCTAA+TGG | + | chr3_4:46845114-46845133 | Msa0503560:intron | 35.0% |
| CAACCTTAGGCAATTAAGAA+AGG | + | chr3_4:46845146-46845165 | Msa0503560:intron | 35.0% | |
| TCATGCTAATTAGTGTCTCT+TGG | + | chr3_4:46845244-46845263 | Msa0503560:intron | 35.0% | |
| CATGCTAATTAGTGTCTCTT+GGG | + | chr3_4:46845245-46845264 | Msa0503560:intron | 35.0% | |
| AAAGCGGATACAAGATGATA+TGG | + | chr3_4:46845557-46845576 | Msa0503560:CDS | 35.0% | |
| AGTTACCATGATGTTTGGTT+AGG | + | chr3_4:46845699-46845718 | Msa0503560:intron | 35.0% | |
| AATCTATGTCACATAGTGTG+AGG | + | chr3_4:46845945-46845964 | Msa0503560:intron | 35.0% | |
| CAAAATTAGGGCTTCAACTA+TGG | - | chr3_4:46845987-46846006 | None:intergenic | 35.0% | |
| !! | GAAGCCCTAATTTTGAGTAA+AGG | + | chr3_4:46845992-46846011 | Msa0503560:intron | 35.0% |
| CGATATTTAAAAAGGACCGA+AGG | + | chr3_4:46846498-46846517 | Msa0503560:intron | 35.0% | |
| TTCCGTTCTTCATAAGATAC+TGG | - | chr3_4:46846543-46846562 | None:intergenic | 35.0% | |
| ACAGGCCTTAAAAGGAAAAT+GGG | - | chr3_4:46846637-46846656 | None:intergenic | 35.0% | |
| AACAGGCCTTAAAAGGAAAA+TGG | - | chr3_4:46846638-46846657 | None:intergenic | 35.0% | |
| TCAAGTAAACAGGCCTTAAA+AGG | - | chr3_4:46846645-46846664 | None:intergenic | 35.0% | |
| ! | ACTATCAAAAGGTATACCTG+CGG | + | chr3_4:46846817-46846836 | Msa0503560:intron | 35.0% |
| TAACATGTGTCGTAGTTCTT+TGG | - | chr3_4:46846914-46846933 | None:intergenic | 35.0% | |
| ACTACTTCTAATGCTGCAAA+TGG | + | chr3_4:46847010-46847029 | Msa0503560:CDS | 35.0% | |
| !! | TCTGAAGTAGATAAGGGTTT+TGG | + | chr3_4:46847093-46847112 | Msa0503560:intron | 35.0% |
| ! | CTGAAGTAGATAAGGGTTTT+GGG | + | chr3_4:46847094-46847113 | Msa0503560:intron | 35.0% |
| ! | TGAAGTAGATAAGGGTTTTG+GGG | + | chr3_4:46847095-46847114 | Msa0503560:intron | 35.0% |
| TGCTTTCTTGTGAAGGAAAT+TGG | - | chr3_4:46847385-46847404 | None:intergenic | 35.0% | |
| !! | TAGTTTTCTGGAAGAAGCTT+GGG | - | chr3_4:46847607-46847626 | None:intergenic | 35.0% |
| !! | ATAGTTTTCTGGAAGAAGCT+TGG | - | chr3_4:46847608-46847627 | None:intergenic | 35.0% |
| AAAACTATGCCACATGTCTT+TGG | + | chr3_4:46847620-46847639 | Msa0503560:CDS | 35.0% | |
| CTTCAAAAACCAAAGACATG+TGG | - | chr3_4:46847632-46847651 | None:intergenic | 35.0% | |
| ! | TCGCCCAAACATTTTTCATT+TGG | + | chr3_4:46847839-46847858 | Msa0503560:intron | 35.0% |
| ! | CGCCCAAACATTTTTCATTT+GGG | + | chr3_4:46847840-46847859 | Msa0503560:intron | 35.0% |
| AGAGGAAGCAAAAACACAAA+TGG | + | chr3_4:46847934-46847953 | Msa0503560:CDS | 35.0% | |
| AAGCAAAAACACAAATGGAG+TGG | + | chr3_4:46847939-46847958 | Msa0503560:CDS | 35.0% | |
| !! | GGTATCTGATCATTTTAGTG+TGG | + | chr3_4:46848104-46848123 | Msa0503560:intron | 35.0% |
| TCACTTGAGTTCTCCAAAAA+CGG | - | chr3_4:46848391-46848410 | None:intergenic | 35.0% | |
| ! | TCTTATCCTTCTGATTTTCG+GGG | - | chr3_4:46848536-46848555 | None:intergenic | 35.0% |
| ! | GTCTTATCCTTCTGATTTTC+GGG | - | chr3_4:46848537-46848556 | None:intergenic | 35.0% |
| !! | GGTCTTATCCTTCTGATTTT+CGG | - | chr3_4:46848538-46848557 | None:intergenic | 35.0% |
| !!! | ATTTTGACTGCAGCAAGAAA+TGG | + | chr3_4:46848692-46848711 | Msa0503560:CDS | 35.0% |
| TATATGCCACATCATTTGCA+AGG | - | chr3_4:46848978-46848997 | None:intergenic | 35.0% | |
| GTGGCATATAAAATGGTTTC+AGG | + | chr3_4:46848988-46849007 | Msa0503560:CDS | 35.0% | |
| !! | CTATTGATTGGTTCGGATAT+TGG | - | chr3_4:46849204-46849223 | None:intergenic | 35.0% |
| TTGAGCCAAAAGAGATATTG+AGG | + | chr3_4:46849348-46849367 | Msa0503560:intron | 35.0% | |
| TGAGCCAAAAGAGATATTGA+GGG | + | chr3_4:46849349-46849368 | Msa0503560:intron | 35.0% | |
| ! | TAAGCCCTCAATATCTCTTT+TGG | - | chr3_4:46849356-46849375 | None:intergenic | 35.0% |
| TGTCATTGATAGAATCTCTC+TGG | + | chr3_4:46849629-46849648 | Msa0503560:intron | 35.0% | |
| GTGTGCAAAAGTAGTTAGAA+GGG | - | chr3_4:46849674-46849693 | None:intergenic | 35.0% | |
| TGTGTGCAAAAGTAGTTAGA+AGG | - | chr3_4:46849675-46849694 | None:intergenic | 35.0% | |
| !! | TCTAACTACTTTTGCACACA+TGG | + | chr3_4:46849675-46849694 | Msa0503560:intron | 35.0% |
| CACATGGATCAGTATACTAA+AGG | + | chr3_4:46849691-46849710 | Msa0503560:intron | 35.0% | |
| AACAAAGATGACAAAACAGC+TGG | + | chr3_4:46849745-46849764 | Msa0503560:CDS | 35.0% | |
| ! | ATTCACTACCTTTTGTTACC+AGG | - | chr3_4:46849798-46849817 | None:intergenic | 35.0% |
| TGGTAACAAAAGGTAGTGAA+TGG | + | chr3_4:46849797-46849816 | Msa0503560:CDS | 35.0% | |
| AAAGCAAATGCATCAAATGC+AGG | - | chr3_4:46849949-46849968 | None:intergenic | 35.0% | |
| !! | TTCTTTTCGAGAAGTGAGTA+TGG | - | chr3_4:46850025-46850044 | None:intergenic | 35.0% |
| ! | TATGCCAAGGAAACTTCTTT+TGG | + | chr3_4:46850065-46850084 | Msa0503560:CDS | 35.0% |
| ! | ATGCCAAGGAAACTTCTTTT+GGG | + | chr3_4:46850066-46850085 | Msa0503560:CDS | 35.0% |
| AATCCCAAAAGAAGTTTCCT+TGG | - | chr3_4:46850072-46850091 | None:intergenic | 35.0% | |
| AGCAAGTGACTGAATAAATG+AGG | - | chr3_4:46850188-46850207 | None:intergenic | 35.0% | |
| CTATTGCATACAAAGTCACA+GGG | - | chr3_4:46850212-46850231 | None:intergenic | 35.0% | |
| ATAAGGGGGAGGAAATATAA+AGG | + | chr3_4:46850295-46850314 | Msa0503560:CDS | 35.0% | |
| AAGTATACTGCTCCAAACAT+AGG | - | chr3_4:46850372-46850391 | None:intergenic | 35.0% | |
| GAAACACGGATGGAATTGAA+GGG | - | chr3_4:46843106-46843125 | None:intergenic | 40.0% | |
| TGAAACACGGATGGAATTGA+AGG | - | chr3_4:46843107-46843126 | None:intergenic | 40.0% | |
| CTTCAATGTTGAAACACGGA+TGG | - | chr3_4:46843116-46843135 | None:intergenic | 40.0% | |
| ATTTATGACACCACACACAC+CGG | + | chr3_4:46843176-46843195 | Msa0503560:CDS | 40.0% | |
| CTGGAGACACATTTACTACT+TGG | - | chr3_4:46843474-46843493 | None:intergenic | 40.0% | |
| !!! | GACAAACGTTTGTTTTTGCC+AGG | - | chr3_4:46843857-46843876 | None:intergenic | 40.0% |
| TCCTCAACTTTAAACCAGGT+AGG | + | chr3_4:46843881-46843900 | Msa0503560:CDS | 40.0% | |
| ! | TCCTACCTGGTTTAAAGTTG+AGG | - | chr3_4:46843885-46843904 | None:intergenic | 40.0% |
| ACCAAAAAATTCTCTCCGGA+TGG | - | chr3_4:46843980-46843999 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr3_4:46844167-46844186 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr3_4:46844170-46844189 | None:intergenic | 40.0% | |
| CATATAGCATTGCTCTTGCT+TGG | + | chr3_4:46844244-46844263 | Msa0503560:intron | 40.0% | |
| ! | GAATATGATGGGAGGTGTAT+TGG | + | chr3_4:46844469-46844488 | Msa0503560:intron | 40.0% |
| ! | TGTTGGGTTTCAAGTGTGAA+TGG | - | chr3_4:46844663-46844682 | None:intergenic | 40.0% |
| !! | AGTCTTGGTTCAGTTTGCTA+GGG | - | chr3_4:46844740-46844759 | None:intergenic | 40.0% |
| ! | GACTCTAATACCACTTGTTG+AGG | + | chr3_4:46844756-46844775 | Msa0503560:intron | 40.0% |
| CAACAACAGGTCAATGTTTC+AGG | + | chr3_4:46844798-46844817 | Msa0503560:intron | 40.0% | |
| !! | ACTTGAGGCCTTGTGATTTT+GGG | - | chr3_4:46844854-46844873 | None:intergenic | 40.0% |
| !! | TACTTGAGGCCTTGTGATTT+TGG | - | chr3_4:46844855-46844874 | None:intergenic | 40.0% |
| CTAGTAGCAAGAAGTTTGAG+AGG | - | chr3_4:46845523-46845542 | None:intergenic | 40.0% | |
| CTCTCAAACTTCTTGCTACT+AGG | + | chr3_4:46845521-46845540 | Msa0503560:CDS | 40.0% | |
| !! | CATCTTGTATCCGCTTTTGA+AGG | - | chr3_4:46845554-46845573 | None:intergenic | 40.0% |
| GAAATGTTGCACACTTACAG+TGG | - | chr3_4:46845600-46845619 | None:intergenic | 40.0% | |
| TATGGGAGAGAGATAAAGTG+TGG | + | chr3_4:46846151-46846170 | Msa0503560:intron | 40.0% | |
| !!! | AACTGTTTTTTAGTGGTGGC+CGG | + | chr3_4:46846242-46846261 | Msa0503560:intron | 40.0% |
| GTTGTATACTCAGGAATTGC+TGG | - | chr3_4:46846608-46846627 | None:intergenic | 40.0% | |
| GGGATAAGAGTTGTATACTC+AGG | - | chr3_4:46846617-46846636 | None:intergenic | 40.0% | |
| ! | CTATCAAAAGGTATACCTGC+GGG | + | chr3_4:46846818-46846837 | Msa0503560:intron | 40.0% |
| CGATTGCTTCATCAACGTTT+AGG | - | chr3_4:46846847-46846866 | None:intergenic | 40.0% | |
| ! | CCATGGTCTGAAGTAGATAA+GGG | + | chr3_4:46847087-46847106 | Msa0503560:intron | 40.0% |
| ATTGAACATCTGACCTACCT+TGG | + | chr3_4:46847298-46847317 | Msa0503560:intron | 40.0% | |
| AATTGGAGTCTGAGTCCAAA+TGG | - | chr3_4:46847368-46847387 | None:intergenic | 40.0% | |
| ! | AGACATGTGGCATAGTTTTC+TGG | - | chr3_4:46847619-46847638 | None:intergenic | 40.0% |
| GTTCCCAAGTACGATTCATA+AGG | - | chr3_4:46848020-46848039 | None:intergenic | 40.0% | |
| TATGAATCGTACTTGGGAAC+CGG | + | chr3_4:46848020-46848039 | Msa0503560:CDS | 40.0% | |
| ! | CTTATCCTTCTGATTTTCGG+GGG | - | chr3_4:46848535-46848554 | None:intergenic | 40.0% |
| TGCAGGAGATAACAACAATG+AGG | + | chr3_4:46848610-46848629 | Msa0503560:intron | 40.0% | |
| TACTTGTAGCAGTTGAGAAC+AGG | + | chr3_4:46848795-46848814 | Msa0503560:CDS | 40.0% | |
| CTACCAAAAGTGATCGAGAT+TGG | + | chr3_4:46848936-46848955 | Msa0503560:CDS | 40.0% | |
| ! | GTTCCAATCTCGATCACTTT+TGG | - | chr3_4:46848942-46848961 | None:intergenic | 40.0% |
| GATCGAGATTGGAACATATC+TGG | + | chr3_4:46848947-46848966 | Msa0503560:CDS | 40.0% | |
| !! | ATTGGTTCGGATATTGGGTT+TGG | - | chr3_4:46849198-46849217 | None:intergenic | 40.0% |
| GCTGCTCAAAGACTATTGAT+TGG | - | chr3_4:46849216-46849235 | None:intergenic | 40.0% | |
| AAAATACCAGAGACAACTCC+CGG | + | chr3_4:46849271-46849290 | Msa0503560:intron | 40.0% | |
| TTCGATAGATAACTCCCAGA+GGG | + | chr3_4:46849323-46849342 | Msa0503560:intron | 40.0% | |
| !! | CTGCAACTAGGAGTATTATG+AGG | - | chr3_4:46849387-46849406 | None:intergenic | 40.0% |
| !!! | GTATTTTTCGGGTGTGAATG+AGG | + | chr3_4:46849474-46849493 | Msa0503560:intron | 40.0% |
| TCAACTTTCAAGGTGAGACT+AGG | - | chr3_4:46849603-46849622 | None:intergenic | 40.0% | |
| GTTCTAACTGTGAAATGCTC+TGG | - | chr3_4:46849724-46849743 | None:intergenic | 40.0% | |
| CAAGAAATCACATGAAGACC+TGG | + | chr3_4:46849777-46849796 | Msa0503560:CDS | 40.0% | |
| CATGAAGACCTGGTAACAAA+AGG | + | chr3_4:46849787-46849806 | Msa0503560:CDS | 40.0% | |
| AGCGACGAACATTGCAATAA+TGG | - | chr3_4:46850112-46850131 | None:intergenic | 40.0% | |
| GCTATTGCATACAAAGTCAC+AGG | - | chr3_4:46850213-46850232 | None:intergenic | 40.0% | |
| ATCACTTGTCTTTGGCACTT+TGG | - | chr3_4:46850277-46850296 | None:intergenic | 40.0% | |
| AGTGCCAAAGACAAGTGATA+AGG | + | chr3_4:46850278-46850297 | Msa0503560:CDS | 40.0% | |
| GTGCCAAAGACAAGTGATAA+GGG | + | chr3_4:46850279-46850298 | Msa0503560:CDS | 40.0% | |
| TGCCAAAGACAAGTGATAAG+GGG | + | chr3_4:46850280-46850299 | Msa0503560:CDS | 40.0% | |
| ! | TGTCACTTCGCTATTGCTCA+TGG | - | chr3_4:46843150-46843169 | None:intergenic | 45.0% |
| GTCTCCAGAAGACAAGCTAA+AGG | + | chr3_4:46843486-46843505 | Msa0503560:CDS | 45.0% | |
| CTACACGTGGCAGTAAATGA+TGG | + | chr3_4:46843607-46843626 | Msa0503560:CDS | 45.0% | |
| GGCAGTAAATGATGGCAATG+AGG | + | chr3_4:46843615-46843634 | Msa0503560:CDS | 45.0% | |
| TGAATCCTCTTGATGCTGCA+AGG | - | chr3_4:46843732-46843751 | None:intergenic | 45.0% | |
| ! | GAAAGTGCAGCAAGGAACAA+GGG | - | chr3_4:46843835-46843854 | None:intergenic | 45.0% |
| !! | AAACCAGGTAGGAGTGTTTG+TGG | + | chr3_4:46843892-46843911 | Msa0503560:CDS | 45.0% |
| GTATTCTTCACTGTGCCATC+CGG | + | chr3_4:46843962-46843981 | Msa0503560:CDS | 45.0% | |
| !!! | GCCATCCGGAGAGAATTTTT+TGG | + | chr3_4:46843976-46843995 | Msa0503560:CDS | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr3_4:46844150-46844169 | None:intergenic | 45.0% |
| !! | GTCTTGGTTCAGTTTGCTAG+GGG | - | chr3_4:46844739-46844758 | None:intergenic | 45.0% |
| ! | GAGTCTTGGTTCAGTTTGCT+AGG | - | chr3_4:46844741-46844760 | None:intergenic | 45.0% |
| ! | ATACCACTTGTTGAGGAGTC+CGG | + | chr3_4:46844763-46844782 | Msa0503560:intron | 45.0% |
| CATCTCCACCCAAAATCACA+AGG | + | chr3_4:46844843-46844862 | Msa0503560:intron | 45.0% | |
| AGCACTTCCTAAATGCCCTA+AGG | - | chr3_4:46845018-46845037 | None:intergenic | 45.0% | |
| AGCACTTCCTAAATGCCCTA+AGG | - | chr3_4:46845018-46845037 | None:intergenic | 45.0% | |
| !! | TATCCGCTTTTGAAGGCTGA+GGG | - | chr3_4:46845547-46845566 | None:intergenic | 45.0% |
| GCGGATACAAGATGATATGG+TGG | + | chr3_4:46845560-46845579 | Msa0503560:CDS | 45.0% | |
| !!! | ACTGTTTTTTAGTGGTGGCC+GGG | + | chr3_4:46846243-46846262 | Msa0503560:intron | 45.0% |
| ! | GCCATGGTCTGAAGTAGATA+AGG | + | chr3_4:46847086-46847105 | Msa0503560:intron | 45.0% |
| CCCTTATCTACTTCAGACCA+TGG | - | chr3_4:46847090-46847109 | None:intergenic | 45.0% | |
| CTTCAATCACAACTGCATCG+TGG | - | chr3_4:46847201-46847220 | None:intergenic | 45.0% | |
| TGAAGATCACACCGCAAATG+TGG | + | chr3_4:46847216-46847235 | Msa0503560:intron | 45.0% | |
| GCTATGGTGCTTTCTTGTGA+AGG | - | chr3_4:46847392-46847411 | None:intergenic | 45.0% | |
| TGAGAGACATGGATAGAACG+AGG | + | chr3_4:46847424-46847443 | Msa0503560:intron | 45.0% | |
| GGAAGAAGCTTGGGTTTAGA+TGG | - | chr3_4:46847598-46847617 | None:intergenic | 45.0% | |
| ! | ATCTATACCCTTGGCCTTTC+AGG | + | chr3_4:46847661-46847680 | Msa0503560:CDS | 45.0% |
| GACACTTACCAACTCCTGAA+AGG | - | chr3_4:46847678-46847697 | None:intergenic | 45.0% | |
| ! | ACTCACATCTCCTGTTGGTT+TGG | - | chr3_4:46848048-46848067 | None:intergenic | 45.0% |
| AAACCAACAGGAGATGTGAG+TGG | + | chr3_4:46848047-46848066 | Msa0503560:CDS | 45.0% | |
| GGAAGGAAGTCCTAGTAACA+TGG | - | chr3_4:46848514-46848533 | None:intergenic | 45.0% | |
| CCTTAATGCCTCAACGACAT+TGG | - | chr3_4:46848825-46848844 | None:intergenic | 45.0% | |
| ! | CCAATGTCGTTGAGGCATTA+AGG | + | chr3_4:46848822-46848841 | Msa0503560:CDS | 45.0% |
| TGATGATCTAATCCAAGGGG+TGG | + | chr3_4:46848880-46848899 | Msa0503560:CDS | 45.0% | |
| GGACTGTCTGATCTTGATCT+AGG | - | chr3_4:46849063-46849082 | None:intergenic | 45.0% | |
| ! | GTCTTTGAGCAGCTCTTTTC+AGG | + | chr3_4:46849223-46849242 | Msa0503560:intron | 45.0% |
| ! | CTCTGGGAGTTATCTATCGA+AGG | - | chr3_4:46849324-46849343 | None:intergenic | 45.0% |
| CTTCGATAGATAACTCCCAG+AGG | + | chr3_4:46849322-46849341 | Msa0503560:intron | 45.0% | |
| !!! | CTTTTGGCTCAATACCCTCT+GGG | - | chr3_4:46849340-46849359 | None:intergenic | 45.0% |
| !!! | TCTTTTGGCTCAATACCCTC+TGG | - | chr3_4:46849341-46849360 | None:intergenic | 45.0% |
| AACGGCAGTTAACTGCAACT+AGG | - | chr3_4:46849399-46849418 | None:intergenic | 45.0% | |
| AAAACCAACCCGATCGTGAA+TGG | + | chr3_4:46849547-46849566 | Msa0503560:intron | 45.0% | |
| AAACCAACCCGATCGTGAAT+GGG | + | chr3_4:46849548-46849567 | Msa0503560:intron | 45.0% | |
| AATCCAACCCATTCACGATC+GGG | - | chr3_4:46849558-46849577 | None:intergenic | 45.0% | |
| CAATCCAACCCATTCACGAT+CGG | - | chr3_4:46849559-46849578 | None:intergenic | 45.0% | |
| !! | GATCGTGAATGGGTTGGATT+GGG | + | chr3_4:46849558-46849577 | Msa0503560:intron | 45.0% |
| TGATGTAGCGAAGGAAACAC+CGG | - | chr3_4:46849869-46849888 | None:intergenic | 45.0% | |
| TACAGTGCTTGATGTAGCGA+AGG | - | chr3_4:46849878-46849897 | None:intergenic | 45.0% | |
| TTCGAGAAGTGAGTATGGAC+AGG | - | chr3_4:46850020-46850039 | None:intergenic | 45.0% | |
| !!! | ATGTTCGTCGCTTTTTGCTC+TGG | + | chr3_4:46850120-46850139 | Msa0503560:CDS | 45.0% |
| GCCAAAGACAAGTGATAAGG+GGG | + | chr3_4:46850281-46850300 | Msa0503560:CDS | 45.0% | |
| TCCCCCTTATCACTTGTCTT+TGG | - | chr3_4:46850285-46850304 | None:intergenic | 45.0% | |
| AAAGACAAGTGATAAGGGGG+AGG | + | chr3_4:46850284-46850303 | Msa0503560:CDS | 45.0% | |
| !!! | TAAATATTCATTTTTATTTT+AGG | - | chr3_4:46844349-46844368 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAGAATTTAT+TGG | + | chr3_4:46846400-46846419 | Msa0503560:intron | 5.0% |
| !!! | TTTATTATTATTTTAAATCA+AGG | + | chr3_4:46848315-46848334 | Msa0503560:intron | 5.0% |
| CTATTGCTCATGGTGGTCTG+TGG | - | chr3_4:46843140-46843159 | None:intergenic | 50.0% | |
| CACTTCGCTATTGCTCATGG+TGG | - | chr3_4:46843147-46843166 | None:intergenic | 50.0% | |
| TAGAGGAACAGCACTACACG+TGG | + | chr3_4:46843594-46843613 | Msa0503560:CDS | 50.0% | |
| CTTGATGCTGCAAGGTGCAA+AGG | - | chr3_4:46843724-46843743 | None:intergenic | 50.0% | |
| TTGCACCTTGCAGCATCAAG+AGG | + | chr3_4:46843724-46843743 | Msa0503560:CDS | 50.0% | |
| ! | GGAAAGTGCAGCAAGGAACA+AGG | - | chr3_4:46843836-46843855 | None:intergenic | 50.0% |
| TGTTCCTTGCTGCACTTTCC+TGG | + | chr3_4:46843836-46843855 | Msa0503560:CDS | 50.0% | |
| ! | TTTGCCAGGAAAGTGCAGCA+AGG | - | chr3_4:46843843-46843862 | None:intergenic | 50.0% |
| AGCCACACCTCCTTGAATTG+TGG | + | chr3_4:46844157-46844176 | Msa0503560:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr3_4:46844162-46844181 | None:intergenic | 50.0% | |
| GTTGTTGCTCACGTGACATC+CGG | - | chr3_4:46844785-46844804 | None:intergenic | 50.0% | |
| GATGTCACGTGAGCAACAAC+AGG | + | chr3_4:46844785-46844804 | Msa0503560:intron | 50.0% | |
| !! | TGAGGCCTTGTGATTTTGGG+TGG | - | chr3_4:46844851-46844870 | None:intergenic | 50.0% |
| !! | GTATCCGCTTTTGAAGGCTG+AGG | - | chr3_4:46845548-46845567 | None:intergenic | 50.0% |
| !!! | CTGTTTTTTAGTGGTGGCCG+GGG | + | chr3_4:46846244-46846263 | Msa0503560:intron | 50.0% |
| ! | CGAGCTTAGCTCAGTTGGTA+GGG | - | chr3_4:46846305-46846324 | None:intergenic | 50.0% |
| ACGAGCTTAGCTCAGTTGGT+AGG | - | chr3_4:46846306-46846325 | None:intergenic | 50.0% | |
| CATCACGAGCTTAGCTCAGT+TGG | - | chr3_4:46846310-46846329 | None:intergenic | 50.0% | |
| TTGGTGGGGCTCAAGTAAAC+AGG | - | chr3_4:46846655-46846674 | None:intergenic | 50.0% | |
| CAACTGCATCGTGGCTTCAT+TGG | - | chr3_4:46847192-46847211 | None:intergenic | 50.0% | |
| GCAGCATCGTACCACATTTG+CGG | - | chr3_4:46847230-46847249 | None:intergenic | 50.0% | |
| ACCAACTCCTGAAAGGCCAA+GGG | - | chr3_4:46847671-46847690 | None:intergenic | 50.0% | |
| TACCAACTCCTGAAAGGCCA+AGG | - | chr3_4:46847672-46847691 | None:intergenic | 50.0% | |
| !! | ATCTCCTGTTGGTTTGGCAC+CGG | - | chr3_4:46848042-46848061 | None:intergenic | 50.0% |
| TCCTTCCCCCGAAAATCAGA+AGG | + | chr3_4:46848527-46848546 | Msa0503560:intron | 50.0% | |
| !! | TCCTTCTGATTTTCGGGGGA+AGG | - | chr3_4:46848531-46848550 | None:intergenic | 50.0% |
| CAGGAGAACCAATGTCGTTG+AGG | + | chr3_4:46848814-46848833 | Msa0503560:CDS | 50.0% | |
| GTGCTGCCTTGCAAATGATG+TGG | + | chr3_4:46848969-46848988 | Msa0503560:CDS | 50.0% | |
| AAGTGGCAGTTAACTGCAGC+TGG | + | chr3_4:46849441-46849460 | Msa0503560:intron | 50.0% | |
| AGTGGCAGTTAACTGCAGCT+GGG | + | chr3_4:46849442-46849461 | Msa0503560:intron | 50.0% | |
| !! | CGATCGTGAATGGGTTGGAT+TGG | + | chr3_4:46849557-46849576 | Msa0503560:intron | 50.0% |
| ! | GCTACATCAAGCACTGTACC+AGG | + | chr3_4:46849880-46849899 | Msa0503560:CDS | 50.0% |
| ! | ACATCAAGCACTGTACCAGG+CGG | + | chr3_4:46849883-46849902 | Msa0503560:CDS | 50.0% |
| TGAAACAGGCGAACCAGCAT+TGG | + | chr3_4:46849915-46849934 | Msa0503560:CDS | 50.0% | |
| CCACCACAAACACTCCTACC+TGG | - | chr3_4:46843898-46843917 | None:intergenic | 55.0% | |
| !! | CCAGGTAGGAGTGTTTGTGG+TGG | + | chr3_4:46843895-46843914 | Msa0503560:CDS | 55.0% |
| !! | GTTCAGTTTGCTAGGGGAGC+GGG | - | chr3_4:46844733-46844752 | None:intergenic | 55.0% |
| !! | GGTTCAGTTTGCTAGGGGAG+CGG | - | chr3_4:46844734-46844753 | None:intergenic | 55.0% |
| CATCCGGACTCCTCAACAAG+TGG | - | chr3_4:46844769-46844788 | None:intergenic | 55.0% | |
| AGGCCCTCAGCCTTCAAAAG+CGG | + | chr3_4:46845541-46845560 | Msa0503560:CDS | 55.0% | |
| TCAACGTTTAGGTCTCCCGC+AGG | - | chr3_4:46846836-46846855 | None:intergenic | 55.0% | |
| ! | ACCCTTGGCCTTTCAGGAGT+TGG | + | chr3_4:46847667-46847686 | Msa0503560:CDS | 55.0% |
| TCTCTCTCTCATCCACCCCT+TGG | - | chr3_4:46848895-46848914 | None:intergenic | 55.0% | |
| ATACCAGAGACAACTCCCGG+AGG | + | chr3_4:46849274-46849293 | Msa0503560:intron | 55.0% | |
| TATCCTCCGGGAGTTGTCTC+TGG | - | chr3_4:46849280-46849299 | None:intergenic | 55.0% | |
| TGACTGCAGTTGGGAGGGAA+CGG | - | chr3_4:46849417-46849436 | None:intergenic | 55.0% | |
| TTCCCTCCCAACTGCAGTCA+GGG | + | chr3_4:46849417-46849436 | Msa0503560:intron | 55.0% | |
| CACTTGCCCTGACTGCAGTT+GGG | - | chr3_4:46849426-46849445 | None:intergenic | 55.0% | |
| GTGGCAGTTAACTGCAGCTG+GGG | + | chr3_4:46849443-46849462 | Msa0503560:intron | 55.0% | |
| CAACCCATTCACGATCGGGT+TGG | - | chr3_4:46849554-46849573 | None:intergenic | 55.0% | |
| CAACCCGATCGTGAATGGGT+TGG | + | chr3_4:46849552-46849571 | Msa0503560:intron | 55.0% | |
| GTAGTAGCAGCACTCCTTGC+CGG | + | chr3_4:46849847-46849866 | Msa0503560:CDS | 55.0% | |
| TAGCGAAGGAAACACCGGCA+AGG | - | chr3_4:46849864-46849883 | None:intergenic | 55.0% | |
| GTTTCACTTCTGTTGCCGCC+TGG | - | chr3_4:46849901-46849920 | None:intergenic | 55.0% | |
| GGCGGCAACAGAAGTGAAAC+AGG | + | chr3_4:46849901-46849920 | Msa0503560:CDS | 55.0% | |
| ! | ACAGGCGAACCAGCATTGGA+AGG | + | chr3_4:46849919-46849938 | Msa0503560:CDS | 55.0% |
| ! | GCGAACCAGCATTGGAAGGA+AGG | + | chr3_4:46849923-46849942 | Msa0503560:CDS | 55.0% |
| GACACCACACACACCGGTGA+AGG | + | chr3_4:46843182-46843201 | Msa0503560:CDS | 60.0% | |
| CGTACCTTCACCGGTGTGTG+TGG | - | chr3_4:46843189-46843208 | None:intergenic | 60.0% | |
| TTTGCTAGGGGAGCGGGAGT+TGG | - | chr3_4:46844727-46844746 | None:intergenic | 60.0% | |
| AAGGTCCGGAGTTCGAACCC+CGG | - | chr3_4:46846264-46846283 | None:intergenic | 60.0% | |
| GTGGTACGATGCTGCTGCAG+AGG | + | chr3_4:46847235-46847254 | Msa0503560:intron | 60.0% | |
| ! | GGAACCGGTGCCAAACCAAC+AGG | + | chr3_4:46848035-46848054 | Msa0503560:CDS | 60.0% |
| GTTCCCTCCCAACTGCAGTC+AGG | + | chr3_4:46849416-46849435 | Msa0503560:intron | 60.0% | |
| TGCCCTGACTGCAGTTGGGA+GGG | - | chr3_4:46849422-46849441 | None:intergenic | 60.0% | |
| TTGCCCTGACTGCAGTTGGG+AGG | - | chr3_4:46849423-46849442 | None:intergenic | 60.0% | |
| CCACTTGCCCTGACTGCAGT+TGG | - | chr3_4:46849427-46849446 | None:intergenic | 60.0% | |
| CCAACTGCAGTCAGGGCAAG+TGG | + | chr3_4:46849424-46849443 | Msa0503560:intron | 60.0% | |
| GCAGGCCTTCCTTCCAATGC+TGG | - | chr3_4:46849931-46849950 | None:intergenic | 60.0% | |
| GGTGCGTGCTTACGTGCGTG+TGG | + | chr3_4:46844490-46844509 | Msa0503560:intron | 65.0% | |
| GGTGGCCGGGGTTCGAACTC+CGG | + | chr3_4:46846256-46846275 | Msa0503560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 46843071 | 46850519 | 46843071 | ID=Msa0503560;Name=Msa0503560 |
| chr3_4 | mRNA | 46843071 | 46850519 | 46843071 | ID=Msa0503560-mRNA-1;Parent=Msa0503560;Name=Msa0503560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=78|1|1|1|1|1|8|205|750 |
| chr3_4 | exon | 46843071 | 46843203 | 46843071 | ID=Msa0503560-mRNA-1:exon:10003;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46843479 | 46843997 | 46843479 | ID=Msa0503560-mRNA-1:exon:10004;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46845452 | 46845601 | 46845452 | ID=Msa0503560-mRNA-1:exon:10005;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46846828 | 46847031 | 46846828 | ID=Msa0503560-mRNA-1:exon:10006;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46847560 | 46847688 | 46847560 | ID=Msa0503560-mRNA-1:exon:10007;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46847916 | 46848104 | 46847916 | ID=Msa0503560-mRNA-1:exon:10008;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46848615 | 46849009 | 46848615 | ID=Msa0503560-mRNA-1:exon:10009;Parent=Msa0503560-mRNA-1 |
| chr3_4 | exon | 46849703 | 46850519 | 46849703 | ID=Msa0503560-mRNA-1:exon:10010;Parent=Msa0503560-mRNA-1 |
| chr3_4 | five_prime_UTR | 46843071 | 46843148 | 46843071 | ID=Msa0503560-mRNA-1:five_prime_utr;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46843149 | 46843203 | 46843149 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46843479 | 46843997 | 46843479 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46845452 | 46845601 | 46845452 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46846828 | 46847031 | 46846828 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46847560 | 46847688 | 46847560 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46847916 | 46848104 | 46847916 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46848615 | 46849009 | 46848615 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | CDS | 46849703 | 46850314 | 46849703 | ID=Msa0503560-mRNA-1:cds;Parent=Msa0503560-mRNA-1 |
| chr3_4 | three_prime_UTR | 46850315 | 46850519 | 46850315 | ID=Msa0503560-mRNA-1:three_prime_utr;Parent=Msa0503560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
