Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449940 | XP_013459315.1 | 72.727 | 154 | 42 | 0 | 1 | 154 | 1 | 154 | 8.07e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449940 | sp|Q9ZQX0|ALB1_GLYSO | 52.632 | 114 | 50 | 2 | 9 | 122 | 1 | 110 | 1.24e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449940 | I3T793 | 72.727 | 154 | 42 | 0 | 1 | 154 | 1 | 154 | 3.85e-76 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011010 | Msa0449940 | 0.806641 | 7.451749e-50 | -8.615850e-47 |
| Msa0025570 | Msa0449940 | 0.809260 | 2.066491e-50 | -8.615850e-47 |
| Msa0048380 | Msa0449940 | 0.809273 | 2.053174e-50 | -8.615850e-47 |
| Msa0060410 | Msa0449940 | 0.811814 | 5.800140e-51 | -8.615850e-47 |
| Msa0073110 | Msa0449940 | 0.812918 | 3.329187e-51 | -8.615850e-47 |
| Msa0117650 | Msa0449940 | 0.801023 | 1.094869e-48 | -8.615850e-47 |
| Msa0163690 | Msa0449940 | 0.816129 | 6.482106e-52 | -8.615850e-47 |
| Msa0449290 | Msa0449940 | 0.888230 | 7.098380e-73 | -8.615850e-47 |
| Msa0449360 | Msa0449940 | 0.879145 | 1.582252e-69 | -8.615850e-47 |
| Msa0449380 | Msa0449940 | 0.897021 | 2.104792e-76 | -8.615850e-47 |
| Msa0449940 | Msa0540640 | 0.806248 | 9.021991e-50 | -8.615850e-47 |
| Msa0449940 | Msa0547370 | 0.800229 | 1.589592e-48 | -8.615850e-47 |
| Msa0449940 | Msa0567330 | 0.809804 | 1.579126e-50 | -8.615850e-47 |
| Msa0449940 | Msa0567570 | 0.804289 | 2.319960e-49 | -8.615850e-47 |
| Msa0449940 | Msa0576320 | 0.803302 | 3.720259e-49 | -8.615850e-47 |
| Msa0449940 | Msa0587710 | 0.831022 | 2.112240e-55 | -8.615850e-47 |
| Msa0449940 | Msa0590620 | -0.801631 | 8.219596e-49 | -8.615850e-47 |
| Msa0449940 | Msa0602100 | 0.803913 | 2.778681e-49 | -8.615850e-47 |
| Msa0449940 | Msa0643230 | 0.801284 | 9.682713e-49 | -8.615850e-47 |
| Msa0449940 | Msa0659230 | 0.820940 | 5.257898e-53 | -8.615850e-47 |
| Msa0449940 | Msa0680460 | 0.808162 | 3.546752e-50 | -8.615850e-47 |
| Msa0449940 | Msa0682910 | 0.809572 | 1.771262e-50 | -8.615850e-47 |
| Msa0449940 | Msa0719600 | 0.803930 | 2.755202e-49 | -8.615850e-47 |
| Msa0449940 | Msa0800120 | 0.805708 | 1.171371e-49 | -8.615850e-47 |
| Msa0449940 | Msa0896920 | 0.801550 | 8.540379e-49 | -8.615850e-47 |
| Msa0449940 | Msa1005370 | 0.803536 | 3.326227e-49 | -8.615850e-47 |
| Msa0449940 | Msa1103450 | 0.809869 | 1.528717e-50 | -8.615850e-47 |
| Msa0449940 | Msa1147010 | 0.843331 | 1.496550e-58 | -8.615850e-47 |
| Msa0449940 | Msa1223710 | 0.801241 | 9.879502e-49 | -8.615850e-47 |
| Msa0449940 | Msa1233620 | 0.804328 | 2.276866e-49 | -8.615850e-47 |
| Msa0449940 | Msa1268360 | 0.811319 | 7.431689e-51 | -8.615850e-47 |
| Msa0449940 | Msa1273320 | 0.801856 | 7.391570e-49 | -8.615850e-47 |
| Msa0449940 | Msa1284020 | 0.807106 | 5.943560e-50 | -8.615850e-47 |
| Msa0449940 | Msa1314020 | 0.809106 | 2.228737e-50 | -8.615850e-47 |
| Msa0449940 | Msa1362520 | 0.820205 | 7.756649e-53 | -8.615850e-47 |
| Msa0449940 | Msa1407810 | 0.812567 | 3.972884e-51 | -8.615850e-47 |
| Msa0449940 | Msa1424870 | 0.824010 | 1.017357e-53 | -8.615850e-47 |
| Msa0449940 | Msa1433360 | 0.802091 | 6.613627e-49 | -8.615850e-47 |
| Msa0449940 | Msa1433570 | 0.803800 | 2.932276e-49 | -8.615850e-47 |
| Msa0449940 | Msa1437780 | 0.812698 | 3.719675e-51 | -8.615850e-47 |
| Msa0244310 | Msa0449940 | 0.800042 | 1.734648e-48 | -8.615850e-47 |
| Msa0286360 | Msa0449940 | 0.811049 | 8.501126e-51 | -8.615850e-47 |
| Msa0356180 | Msa0449940 | 0.880920 | 3.688200e-70 | -8.615850e-47 |
| Msa0356200 | Msa0449940 | 0.811978 | 5.342839e-51 | -8.615850e-47 |
| Msa0356240 | Msa0449940 | 0.852418 | 4.676589e-61 | -8.615850e-47 |
| Msa0356250 | Msa0449940 | 0.801042 | 1.085224e-48 | -8.615850e-47 |
| Msa0356270 | Msa0449940 | 0.877276 | 7.155692e-69 | -8.615850e-47 |
| Msa0356320 | Msa0449940 | 0.840455 | 8.607063e-58 | -8.615850e-47 |
| Msa0356360 | Msa0449940 | 0.884542 | 1.754627e-71 | -8.615850e-47 |
| Msa0356380 | Msa0449940 | 0.818079 | 2.363750e-52 | -8.615850e-47 |
| Msa0356410 | Msa0449940 | 0.825993 | 3.461439e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449940 | MtrunA17_Chr3g0090571 | 72.727 | 154 | 42 | 0 | 1 | 154 | 1 | 154 | 7.42e-80 | 233 |
| Msa0449940 | MtrunA17_Chr7g0231991 | 55.556 | 135 | 53 | 3 | 23 | 154 | 2 | 132 | 4.20e-47 | 149 |
| Msa0449940 | MtrunA17_Chr7g0232011 | 49.032 | 155 | 68 | 5 | 1 | 154 | 1 | 145 | 2.93e-43 | 140 |
| Msa0449940 | MtrunA17_Chr3g0111111 | 42.675 | 157 | 64 | 5 | 1 | 150 | 1 | 138 | 5.35e-35 | 119 |
| Msa0449940 | MtrunA17_Chr3g0111281 | 45.161 | 155 | 63 | 5 | 1 | 150 | 1 | 138 | 1.99e-34 | 117 |
| Msa0449940 | MtrunA17_Chr6g0456951 | 48.667 | 150 | 58 | 6 | 1 | 148 | 1 | 133 | 3.41e-34 | 117 |
| Msa0449940 | MtrunA17_Chr7g0236801 | 45.324 | 139 | 69 | 4 | 1 | 136 | 1 | 135 | 9.83e-33 | 113 |
| Msa0449940 | MtrunA17_Chr3g0111131 | 47.794 | 136 | 56 | 5 | 1 | 131 | 1 | 126 | 1.06e-32 | 112 |
| Msa0449940 | MtrunA17_Chr7g0236791 | 46.429 | 140 | 65 | 6 | 1 | 136 | 1 | 134 | 1.23e-32 | 112 |
| Msa0449940 | MtrunA17_Chr3g0111071 | 44.526 | 137 | 68 | 4 | 1 | 136 | 1 | 130 | 5.99e-31 | 108 |
| Msa0449940 | MtrunA17_Chr3g0111351 | 43.382 | 136 | 68 | 4 | 1 | 134 | 9 | 137 | 3.90e-30 | 106 |
| Msa0449940 | MtrunA17_Chr3g0104571 | 43.590 | 156 | 64 | 7 | 1 | 152 | 1 | 136 | 4.23e-30 | 106 |
| Msa0449940 | MtrunA17_Chr6g0464071 | 42.857 | 154 | 62 | 5 | 1 | 150 | 1 | 132 | 7.75e-30 | 105 |
| Msa0449940 | MtrunA17_Chr3g0111261 | 46.104 | 154 | 59 | 6 | 1 | 150 | 1 | 134 | 1.34e-29 | 105 |
| Msa0449940 | MtrunA17_Chr3g0111241 | 46.721 | 122 | 55 | 4 | 1 | 119 | 1 | 115 | 7.80e-29 | 102 |
| Msa0449940 | MtrunA17_Chr8g0344771 | 49.091 | 110 | 53 | 3 | 37 | 145 | 12 | 119 | 9.27e-29 | 102 |
| Msa0449940 | MtrunA17_Chr3g0111081 | 43.066 | 137 | 70 | 4 | 1 | 136 | 1 | 130 | 4.49e-28 | 101 |
| Msa0449940 | MtrunA17_Chr8g0344791 | 53.465 | 101 | 44 | 3 | 37 | 136 | 12 | 110 | 5.70e-28 | 100 |
| Msa0449940 | MtrunA17_Chr6g0468621 | 43.506 | 154 | 66 | 8 | 1 | 153 | 1 | 134 | 2.77e-27 | 99.0 |
| Msa0449940 | MtrunA17_Chr8g0357331 | 53.086 | 81 | 38 | 0 | 74 | 154 | 21 | 101 | 1.61e-26 | 96.3 |
| Msa0449940 | MtrunA17_Chr6g0468601 | 40.260 | 154 | 74 | 6 | 1 | 153 | 1 | 137 | 3.52e-26 | 96.3 |
| Msa0449940 | MtrunA17_Chr8g0344801 | 53.333 | 90 | 39 | 3 | 49 | 136 | 7 | 95 | 5.48e-26 | 94.7 |
| Msa0449940 | MtrunA17_Chr3g0111191 | 41.600 | 125 | 58 | 4 | 1 | 118 | 1 | 117 | 6.21e-26 | 95.1 |
| Msa0449940 | MtrunA17_Chr6g0456991 | 60.000 | 80 | 30 | 2 | 49 | 127 | 27 | 105 | 1.09e-25 | 94.4 |
| Msa0449940 | MtrunA17_Chr3g0111221 | 47.126 | 87 | 41 | 2 | 50 | 134 | 24 | 107 | 2.53e-21 | 83.2 |
| Msa0449940 | MtrunA17_Chr1g0153591 | 41.935 | 124 | 55 | 5 | 1 | 124 | 1 | 107 | 3.52e-21 | 82.8 |
| Msa0449940 | MtrunA17_Chr3g0111311 | 51.163 | 86 | 36 | 3 | 35 | 119 | 10 | 90 | 1.29e-20 | 80.9 |
| Msa0449940 | MtrunA17_Chr4g0012121 | 38.125 | 160 | 78 | 6 | 1 | 154 | 1 | 145 | 1.63e-20 | 82.0 |
| Msa0449940 | MtrunA17_Chr3g0092701 | 61.290 | 62 | 24 | 0 | 1 | 62 | 1 | 62 | 4.01e-19 | 76.3 |
| Msa0449940 | MtrunA17_Chr3g0092851 | 60.317 | 63 | 23 | 2 | 1 | 61 | 1 | 63 | 5.10e-19 | 75.9 |
| Msa0449940 | MtrunA17_Chr3g0092881 | 57.971 | 69 | 28 | 1 | 1 | 68 | 1 | 69 | 7.11e-19 | 75.9 |
| Msa0449940 | MtrunA17_Chr3g0092841 | 59.420 | 69 | 27 | 1 | 1 | 68 | 1 | 69 | 1.35e-18 | 75.1 |
| Msa0449940 | MtrunA17_Chr3g0092801 | 59.420 | 69 | 27 | 1 | 1 | 68 | 1 | 69 | 1.35e-18 | 75.1 |
| Msa0449940 | MtrunA17_Chr3g0092704 | 71.429 | 49 | 14 | 0 | 1 | 49 | 1 | 49 | 2.14e-18 | 74.7 |
| Msa0449940 | MtrunA17_Chr8g0359071 | 33.793 | 145 | 74 | 5 | 3 | 144 | 4 | 129 | 2.63e-18 | 76.3 |
| Msa0449940 | MtrunA17_Chr7g0225821 | 36.508 | 126 | 72 | 5 | 1 | 124 | 1 | 120 | 2.28e-17 | 73.2 |
| Msa0449940 | MtrunA17_Chr3g0092901 | 64.151 | 53 | 18 | 1 | 1 | 53 | 1 | 52 | 1.69e-15 | 67.0 |
| Msa0449940 | MtrunA17_Chr3g0111711 | 35.714 | 126 | 55 | 4 | 1 | 117 | 1 | 109 | 3.00e-14 | 64.7 |
| Msa0449940 | MtrunA17_Chr3g0111201 | 47.619 | 63 | 22 | 1 | 88 | 150 | 3 | 54 | 1.68e-13 | 61.6 |
| Msa0449940 | MtrunA17_Chr3g0092771 | 87.879 | 33 | 4 | 0 | 1 | 33 | 1 | 33 | 2.63e-13 | 60.8 |
| Msa0449940 | MtrunA17_Chr3g0090581 | 59.184 | 49 | 20 | 0 | 21 | 69 | 22 | 70 | 1.75e-12 | 59.3 |
| Msa0449940 | MtrunA17_Chr3g0092941 | 80.556 | 36 | 6 | 1 | 1 | 35 | 1 | 36 | 1.19e-11 | 56.6 |
| Msa0449940 | MtrunA17_Chr6g0483481 | 38.655 | 119 | 55 | 6 | 23 | 132 | 5 | 114 | 1.24e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3_3:+34910245 | Msa0449940:CDS |
| GTGTGATTACCGCAATTATT+CGG | 0.292506 | 3_3:-34910065 | None:intergenic |
| TTTGTTTCCAATTGATCAAT+TGG | 0.321512 | 3_3:+34910480 | Msa0449940:three_prime_UTR |
| GGTACTTGCATAAGTCTATC+TGG | 0.324944 | 3_3:+34910122 | Msa0449940:CDS |
| GCAGAACGTTATTTCAAGAT+TGG | 0.331624 | 3_3:+34910293 | Msa0449940:CDS |
| AAGAAATCCAATTGATCAAT+TGG | 0.360164 | 3_3:-34910487 | None:intergenic |
| TTATGTTAAGCTTGCTACTT+TGG | 0.363249 | 3_3:+34909733 | Msa0449940:CDS |
| CTGCTTCAACGTTCTTCGTC+TGG | 0.376847 | 3_3:-34910001 | None:intergenic |
| TGTGATTACCGCAATTATTC+GGG | 0.377598 | 3_3:-34910064 | None:intergenic |
| AGCTTAACATAAGTCATTGT+TGG | 0.383649 | 3_3:-34909722 | None:intergenic |
| CGGGTCAAATGGTGAACAAT+AGG | 0.384422 | 3_3:-34910045 | None:intergenic |
| AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3_3:+34910370 | Msa0449940:CDS |
| ATTGATCAATTGGATTTCTT+CGG | 0.409409 | 3_3:+34910490 | Msa0449940:three_prime_UTR |
| CGAGACATATCATTCTTAAG+TGG | 0.433054 | 3_3:-34910399 | None:intergenic |
| CCATATTCAATATCAGCATT+AGG | 0.437256 | 3_3:-34910245 | None:intergenic |
| CCGCAATTATTCGGGTCAAA+TGG | 0.448006 | 3_3:-34910056 | None:intergenic |
| TCTTCGGTATGTATTGTGCA+TGG | 0.484118 | 3_3:+34910506 | Msa0449940:three_prime_UTR |
| GAGTGCATCAAGAAGGGAAG+TGG | 0.522512 | 3_3:+34910203 | Msa0449940:CDS |
| CTTCGGTATGTATTGTGCAT+GGG | 0.523431 | 3_3:+34910507 | Msa0449940:three_prime_UTR |
| GCAGCGAGCTGTCCGTATGC+AGG | 0.535912 | 3_3:+34910020 | Msa0449940:CDS |
| AATTGATCAATTGGAAACAA+AGG | 0.536616 | 3_3:-34910478 | None:intergenic |
| TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3_3:+34910196 | Msa0449940:CDS |
| TACCATAAAATAACGCCCAA+GGG | 0.572643 | 3_3:-34910103 | None:intergenic |
| CCATTTGACCCGAATAATTG+CGG | 0.575923 | 3_3:+34910056 | Msa0449940:CDS |
| GAACAATAGGAACCTGCATA+CGG | 0.583329 | 3_3:-34910032 | None:intergenic |
| GTACCATAAAATAACGCCCA+AGG | 0.604990 | 3_3:-34910104 | None:intergenic |
| ACTTCCCTTCTTGATGCACT+CGG | 0.605609 | 3_3:-34910201 | None:intergenic |
| ACAAATATACATACAGAATG+TGG | 0.609862 | 3_3:-34909771 | None:intergenic |
| CGTTCTGCTTCATCTACAGA+GGG | 0.611592 | 3_3:-34910278 | None:intergenic |
| CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3_3:+34910197 | Msa0449940:CDS |
| ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3_3:+34910249 | Msa0449940:CDS |
| CATAAAATAACGCCCAAGGG+GGG | 0.647999 | 3_3:-34910100 | None:intergenic |
| AGTGCATCAAGAAGGGAAGT+GGG | 0.648471 | 3_3:+34910204 | Msa0449940:CDS |
| ACGTTCTGCTTCATCTACAG+AGG | 0.649348 | 3_3:-34910279 | None:intergenic |
| ACCATAAAATAACGCCCAAG+GGG | 0.664688 | 3_3:-34910102 | None:intergenic |
| CATGCACATGATAACATGCA+TGG | 0.677543 | 3_3:-34910557 | None:intergenic |
| CCATAAAATAACGCCCAAGG+GGG | 0.682980 | 3_3:-34910101 | None:intergenic |
| ACATAATATGAAGATGATCG+AGG | 0.692790 | 3_3:+34910151 | Msa0449940:CDS |
| TAGATGCATGATAACATGCA+TGG | 0.728301 | 3_3:-34910437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCGATATATATTTATATGTT+AGG | + | chr3_3:34909818-34909837 | Msa0449940:intron | 15.0% |
| !! | TGAATATAACGTATATATTT+AGG | - | chr3_3:34909929-34909948 | None:intergenic | 15.0% |
| !! | TCGATATATATTTATATGTT+AGG | + | chr3_3:34909818-34909837 | Msa0449940:intron | 15.0% |
| !! | TGAATATAACGTATATATTT+AGG | - | chr3_3:34909929-34909948 | None:intergenic | 15.0% |
| !!! | TGAAGAATTTTTTTACTACA+GGG | - | chr3_3:34910325-34910344 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTTTTTACTAC+AGG | - | chr3_3:34910326-34910345 | None:intergenic | 20.0% |
| !!! | TGAAGAATTTTTTTACTACA+GGG | - | chr3_3:34910325-34910344 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTTTTTACTAC+AGG | - | chr3_3:34910326-34910345 | None:intergenic | 20.0% |
| ! | ACAAATATACATACAGAATG+TGG | - | chr3_3:34909774-34909793 | None:intergenic | 25.0% |
| ! | CGTATATATTTAGGAAAGTT+TGG | - | chr3_3:34909920-34909939 | None:intergenic | 25.0% |
| ! | TTATATTCACACATGTGTAT+TGG | + | chr3_3:34909940-34909959 | Msa0449940:intron | 25.0% |
| ! | AATTGATCAATTGGAAACAA+AGG | - | chr3_3:34910481-34910500 | None:intergenic | 25.0% |
| ! | TTTGTTTCCAATTGATCAAT+TGG | + | chr3_3:34910480-34910499 | Msa0449940:three_prime_UTR | 25.0% |
| ! | AAGAAATCCAATTGATCAAT+TGG | - | chr3_3:34910490-34910509 | None:intergenic | 25.0% |
| ! | ATTGATCAATTGGATTTCTT+CGG | + | chr3_3:34910490-34910509 | Msa0449940:three_prime_UTR | 25.0% |
| ! | ACAAATATACATACAGAATG+TGG | - | chr3_3:34909774-34909793 | None:intergenic | 25.0% |
| ! | CGTATATATTTAGGAAAGTT+TGG | - | chr3_3:34909920-34909939 | None:intergenic | 25.0% |
| ! | TTATATTCACACATGTGTAT+TGG | + | chr3_3:34909940-34909959 | Msa0449940:intron | 25.0% |
| ! | AATTGATCAATTGGAAACAA+AGG | - | chr3_3:34910481-34910500 | None:intergenic | 25.0% |
| ! | TTTGTTTCCAATTGATCAAT+TGG | + | chr3_3:34910480-34910499 | Msa0449940:three_prime_UTR | 25.0% |
| ! | AAGAAATCCAATTGATCAAT+TGG | - | chr3_3:34910490-34910509 | None:intergenic | 25.0% |
| ! | ATTGATCAATTGGATTTCTT+CGG | + | chr3_3:34910490-34910509 | Msa0449940:three_prime_UTR | 25.0% |
| AGCTTAACATAAGTCATTGT+TGG | - | chr3_3:34909725-34909744 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | + | chr3_3:34909733-34909752 | Msa0449940:CDS | 30.0% |
| ACATAATATGAAGATGATCG+AGG | + | chr3_3:34910151-34910170 | Msa0449940:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | - | chr3_3:34910248-34910267 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | + | chr3_3:34910245-34910264 | Msa0449940:CDS | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | + | chr3_3:34910249-34910268 | Msa0449940:CDS | 30.0% | |
| !!! | GAATTTTTTTACTACAGGGT+TGG | - | chr3_3:34910321-34910340 | None:intergenic | 30.0% |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | - | chr3_3:34910354-34910373 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | + | chr3_3:34910364-34910383 | Msa0449940:CDS | 30.0% | |
| AGCTTAACATAAGTCATTGT+TGG | - | chr3_3:34909725-34909744 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | + | chr3_3:34909733-34909752 | Msa0449940:CDS | 30.0% |
| ACATAATATGAAGATGATCG+AGG | + | chr3_3:34910151-34910170 | Msa0449940:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | - | chr3_3:34910248-34910267 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | + | chr3_3:34910245-34910264 | Msa0449940:CDS | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | + | chr3_3:34910249-34910268 | Msa0449940:CDS | 30.0% | |
| !!! | GAATTTTTTTACTACAGGGT+TGG | - | chr3_3:34910321-34910340 | None:intergenic | 30.0% |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | - | chr3_3:34910354-34910373 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | + | chr3_3:34910364-34910383 | Msa0449940:CDS | 30.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | - | chr3_3:34909968-34909987 | None:intergenic | 35.0% | |
| TGTGATTACCGCAATTATTC+GGG | - | chr3_3:34910067-34910086 | None:intergenic | 35.0% | |
| GTGTGATTACCGCAATTATT+CGG | - | chr3_3:34910068-34910087 | None:intergenic | 35.0% | |
| TACCATAAAATAACGCCCAA+GGG | - | chr3_3:34910106-34910125 | None:intergenic | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | - | chr3_3:34910182-34910201 | None:intergenic | 35.0% |
| ! | GCAGAACGTTATTTCAAGAT+TGG | + | chr3_3:34910293-34910312 | Msa0449940:CDS | 35.0% |
| CGAGACATATCATTCTTAAG+TGG | - | chr3_3:34910402-34910421 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | - | chr3_3:34910440-34910459 | None:intergenic | 35.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | - | chr3_3:34909968-34909987 | None:intergenic | 35.0% | |
| TGTGATTACCGCAATTATTC+GGG | - | chr3_3:34910067-34910086 | None:intergenic | 35.0% | |
| GTGTGATTACCGCAATTATT+CGG | - | chr3_3:34910068-34910087 | None:intergenic | 35.0% | |
| TACCATAAAATAACGCCCAA+GGG | - | chr3_3:34910106-34910125 | None:intergenic | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | - | chr3_3:34910182-34910201 | None:intergenic | 35.0% |
| ! | GCAGAACGTTATTTCAAGAT+TGG | + | chr3_3:34910293-34910312 | Msa0449940:CDS | 35.0% |
| CGAGACATATCATTCTTAAG+TGG | - | chr3_3:34910402-34910421 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | - | chr3_3:34910440-34910459 | None:intergenic | 35.0% | |
| ACGATTACTGCAAATGGCAA+AGG | - | chr3_3:34909981-34910000 | None:intergenic | 40.0% | |
| GAACAATAGGAACCTGCATA+CGG | - | chr3_3:34910035-34910054 | None:intergenic | 40.0% | |
| CCATTTGACCCGAATAATTG+CGG | + | chr3_3:34910056-34910075 | Msa0449940:CDS | 40.0% | |
| ACCATAAAATAACGCCCAAG+GGG | - | chr3_3:34910105-34910124 | None:intergenic | 40.0% | |
| GTACCATAAAATAACGCCCA+AGG | - | chr3_3:34910107-34910126 | None:intergenic | 40.0% | |
| GGTACTTGCATAAGTCTATC+TGG | + | chr3_3:34910122-34910141 | Msa0449940:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | + | chr3_3:34910370-34910389 | Msa0449940:CDS | 40.0% | |
| TCTTCGGTATGTATTGTGCA+TGG | + | chr3_3:34910506-34910525 | Msa0449940:three_prime_UTR | 40.0% | |
| CTTCGGTATGTATTGTGCAT+GGG | + | chr3_3:34910507-34910526 | Msa0449940:three_prime_UTR | 40.0% | |
| ACGATTACTGCAAATGGCAA+AGG | - | chr3_3:34909981-34910000 | None:intergenic | 40.0% | |
| GAACAATAGGAACCTGCATA+CGG | - | chr3_3:34910035-34910054 | None:intergenic | 40.0% | |
| CCATTTGACCCGAATAATTG+CGG | + | chr3_3:34910056-34910075 | Msa0449940:CDS | 40.0% | |
| ACCATAAAATAACGCCCAAG+GGG | - | chr3_3:34910105-34910124 | None:intergenic | 40.0% | |
| GTACCATAAAATAACGCCCA+AGG | - | chr3_3:34910107-34910126 | None:intergenic | 40.0% | |
| GGTACTTGCATAAGTCTATC+TGG | + | chr3_3:34910122-34910141 | Msa0449940:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | + | chr3_3:34910370-34910389 | Msa0449940:CDS | 40.0% | |
| TCTTCGGTATGTATTGTGCA+TGG | + | chr3_3:34910506-34910525 | Msa0449940:three_prime_UTR | 40.0% | |
| CTTCGGTATGTATTGTGCAT+GGG | + | chr3_3:34910507-34910526 | Msa0449940:three_prime_UTR | 40.0% | |
| GTCTGGACGATTACTGCAAA+TGG | - | chr3_3:34909987-34910006 | None:intergenic | 45.0% | |
| CGGGTCAAATGGTGAACAAT+AGG | - | chr3_3:34910048-34910067 | None:intergenic | 45.0% | |
| CCGCAATTATTCGGGTCAAA+TGG | - | chr3_3:34910059-34910078 | None:intergenic | 45.0% | |
| CATAAAATAACGCCCAAGGG+GGG | - | chr3_3:34910103-34910122 | None:intergenic | 45.0% | |
| CCATAAAATAACGCCCAAGG+GGG | - | chr3_3:34910104-34910123 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | - | chr3_3:34910204-34910223 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | + | chr3_3:34910204-34910223 | Msa0449940:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | - | chr3_3:34910281-34910300 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | - | chr3_3:34910282-34910301 | None:intergenic | 45.0% | |
| GTCTGGACGATTACTGCAAA+TGG | - | chr3_3:34909987-34910006 | None:intergenic | 45.0% | |
| CGGGTCAAATGGTGAACAAT+AGG | - | chr3_3:34910048-34910067 | None:intergenic | 45.0% | |
| CCGCAATTATTCGGGTCAAA+TGG | - | chr3_3:34910059-34910078 | None:intergenic | 45.0% | |
| CATAAAATAACGCCCAAGGG+GGG | - | chr3_3:34910103-34910122 | None:intergenic | 45.0% | |
| CCATAAAATAACGCCCAAGG+GGG | - | chr3_3:34910104-34910123 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | - | chr3_3:34910204-34910223 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | + | chr3_3:34910204-34910223 | Msa0449940:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | - | chr3_3:34910281-34910300 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | - | chr3_3:34910282-34910301 | None:intergenic | 45.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | - | chr3_3:34910004-34910023 | None:intergenic | 50.0% | |
| !! | CCCCCTTGGGCGTTATTTTA+TGG | + | chr3_3:34910101-34910120 | Msa0449940:CDS | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | + | chr3_3:34910196-34910215 | Msa0449940:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | + | chr3_3:34910197-34910216 | Msa0449940:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | + | chr3_3:34910203-34910222 | Msa0449940:CDS | 50.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | - | chr3_3:34910004-34910023 | None:intergenic | 50.0% | |
| !! | CCCCCTTGGGCGTTATTTTA+TGG | + | chr3_3:34910101-34910120 | Msa0449940:CDS | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | + | chr3_3:34910196-34910215 | Msa0449940:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | + | chr3_3:34910197-34910216 | Msa0449940:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | + | chr3_3:34910203-34910222 | Msa0449940:CDS | 50.0% | |
| AGATTGTCGTTGCCCCCCTT+GGG | + | chr3_3:34910088-34910107 | Msa0449940:CDS | 55.0% | |
| AGATTGTCGTTGCCCCCCTT+GGG | + | chr3_3:34910088-34910107 | Msa0449940:CDS | 55.0% | |
| CAGATTGTCGTTGCCCCCCT+TGG | + | chr3_3:34910087-34910106 | Msa0449940:CDS | 60.0% | |
| CAGATTGTCGTTGCCCCCCT+TGG | + | chr3_3:34910087-34910106 | Msa0449940:CDS | 60.0% | |
| GCAGCGAGCTGTCCGTATGC+AGG | + | chr3_3:34910020-34910039 | Msa0449940:CDS | 65.0% | |
| GCAGCGAGCTGTCCGTATGC+AGG | + | chr3_3:34910020-34910039 | Msa0449940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 34909670 | 34910571 | 34909670 | ID=Msa0449940;Name=Msa0449940 |
| chr3_3 | mRNA | 34909670 | 34910571 | 34909670 | ID=Msa0449940-mRNA-1;Parent=Msa0449940;Name=Msa0449940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=58|1|1|1|1|1|2|165|154 |
| chr3_3 | exon | 34909670 | 34909779 | 34909670 | ID=Msa0449940-mRNA-1:exon:6215;Parent=Msa0449940-mRNA-1 |
| chr3_3 | exon | 34909994 | 34910571 | 34909994 | ID=Msa0449940-mRNA-1:exon:6216;Parent=Msa0449940-mRNA-1 |
| chr3_3 | five_prime_UTR | 34909670 | 34909727 | 34909670 | ID=Msa0449940-mRNA-1:five_prime_utr;Parent=Msa0449940-mRNA-1 |
| chr3_3 | CDS | 34909728 | 34909779 | 34909728 | ID=Msa0449940-mRNA-1:cds;Parent=Msa0449940-mRNA-1 |
| chr3_3 | CDS | 34909994 | 34910406 | 34909994 | ID=Msa0449940-mRNA-1:cds;Parent=Msa0449940-mRNA-1 |
| chr3_3 | three_prime_UTR | 34910407 | 34910571 | 34910407 | ID=Msa0449940-mRNA-1:three_prime_utr;Parent=Msa0449940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
