Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356360 | XP_013459315.1 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 5.69e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356360 | sp|P62929|ALB1D_PEA | 54.098 | 122 | 49 | 4 | 1 | 122 | 1 | 115 | 1.95e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356360 | I3T793 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 2.72e-78 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa0356360 | 0.821529 | 3.847360e-53 | -8.615850e-47 |
| Msa0025570 | Msa0356360 | 0.862033 | 6.749368e-64 | -8.615850e-47 |
| Msa0060410 | Msa0356360 | 0.827831 | 1.259128e-54 | -8.615850e-47 |
| Msa0073110 | Msa0356360 | 0.860763 | 1.646692e-63 | -8.615850e-47 |
| Msa0080620 | Msa0356360 | -0.800189 | 1.619498e-48 | -8.615850e-47 |
| Msa0121320 | Msa0356360 | 0.825589 | 4.317111e-54 | -8.615850e-47 |
| Msa0136180 | Msa0356360 | -0.812949 | 3.276472e-51 | -8.615850e-47 |
| Msa0137010 | Msa0356360 | -0.801554 | 8.525226e-49 | -8.615850e-47 |
| Msa0163690 | Msa0356360 | 0.812535 | 4.037715e-51 | -8.615850e-47 |
| Msa0166180 | Msa0356360 | 0.817065 | 3.999687e-52 | -8.615850e-47 |
| Msa0189150 | Msa0356360 | -0.806909 | 6.543134e-50 | -8.615850e-47 |
| Msa0244310 | Msa0356360 | 0.811483 | 6.846313e-51 | -8.615850e-47 |
| Msa0248320 | Msa0356360 | 0.814759 | 1.308286e-51 | -8.615850e-47 |
| Msa0258010 | Msa0356360 | 0.805739 | 1.154225e-49 | -8.615850e-47 |
| Msa0258260 | Msa0356360 | 0.813634 | 2.318256e-51 | -8.615850e-47 |
| Msa0267450 | Msa0356360 | -0.804745 | 1.864303e-49 | -8.615850e-47 |
| Msa0267510 | Msa0356360 | -0.809477 | 1.855813e-50 | -8.615850e-47 |
| Msa0267710 | Msa0356360 | 0.805854 | 1.091765e-49 | -8.615850e-47 |
| Msa0279810 | Msa0356360 | 0.804809 | 1.807458e-49 | -8.615850e-47 |
| Msa0282830 | Msa0356360 | 0.827742 | 1.322202e-54 | -8.615850e-47 |
| Msa0286360 | Msa0356360 | 0.814337 | 1.621806e-51 | -8.615850e-47 |
| Msa0321240 | Msa0356360 | 0.803260 | 3.794710e-49 | -8.615850e-47 |
| Msa0335340 | Msa0356360 | 0.818831 | 1.596553e-52 | -8.615850e-47 |
| Msa0336460 | Msa0356360 | 0.819188 | 1.324131e-52 | -8.615850e-47 |
| Msa0354600 | Msa0356360 | 0.819723 | 9.999686e-53 | -8.615850e-47 |
| Msa0356180 | Msa0356360 | 0.996260 | 2.594160e-225 | -8.615850e-47 |
| Msa0356240 | Msa0356360 | 0.872936 | 2.168008e-67 | -8.615850e-47 |
| Msa0356250 | Msa0356360 | 0.809073 | 2.265242e-50 | -8.615850e-47 |
| Msa0356270 | Msa0356360 | 0.907251 | 6.203538e-81 | -8.615850e-47 |
| Msa0356320 | Msa0356360 | 0.854444 | 1.225959e-61 | -8.615850e-47 |
| Msa0356360 | Msa0356380 | 0.800877 | 1.172895e-48 | -8.615850e-47 |
| Msa0356360 | Msa0356410 | 0.807435 | 5.061744e-50 | -8.615850e-47 |
| Msa0356360 | Msa0364030 | -0.803857 | 2.853274e-49 | -8.615850e-47 |
| Msa0356360 | Msa0364910 | -0.821091 | 4.854325e-53 | -8.615850e-47 |
| Msa0356360 | Msa0403740 | -0.800903 | 1.158461e-48 | -8.615850e-47 |
| Msa0356360 | Msa0449290 | 0.950350 | 1.975060e-108 | -8.615850e-47 |
| Msa0356360 | Msa0449360 | 0.866796 | 2.193529e-65 | -8.615850e-47 |
| Msa0356360 | Msa0449380 | 0.876189 | 1.701380e-68 | -8.615850e-47 |
| Msa0356360 | Msa0449940 | 0.884542 | 1.754627e-71 | -8.615850e-47 |
| Msa0356360 | Msa0469770 | -0.807519 | 4.857771e-50 | -8.615850e-47 |
| Msa0356360 | Msa0471130 | -0.808355 | 3.225932e-50 | -8.615850e-47 |
| Msa0356360 | Msa0540640 | 0.827354 | 1.638783e-54 | -8.615850e-47 |
| Msa0356360 | Msa0547370 | 0.821975 | 3.033400e-53 | -8.615850e-47 |
| Msa0356360 | Msa0548260 | -0.802304 | 5.977238e-49 | -8.615850e-47 |
| Msa0356360 | Msa0549970 | 0.806136 | 9.525486e-50 | -8.615850e-47 |
| Msa0356360 | Msa0565370 | -0.802808 | 4.705655e-49 | -8.615850e-47 |
| Msa0356360 | Msa0565430 | -0.810417 | 1.164723e-50 | -8.615850e-47 |
| Msa0356360 | Msa0566280 | 0.814480 | 1.507848e-51 | -8.615850e-47 |
| Msa0356360 | Msa0567330 | 0.839193 | 1.834889e-57 | -8.615850e-47 |
| Msa0356360 | Msa0567570 | 0.829088 | 6.260093e-55 | -8.615850e-47 |
| Msa0356360 | Msa0576320 | 0.828974 | 6.669945e-55 | -8.615850e-47 |
| Msa0356360 | Msa0587710 | 0.825484 | 4.570252e-54 | -8.615850e-47 |
| Msa0356360 | Msa0590620 | -0.828467 | 8.847313e-55 | -8.615850e-47 |
| Msa0356360 | Msa0597800 | 0.800391 | 1.473479e-48 | -8.615850e-47 |
| Msa0356360 | Msa0603180 | -0.809372 | 1.954428e-50 | -8.615850e-47 |
| Msa0356360 | Msa0603310 | 0.804003 | 2.661540e-49 | -8.615850e-47 |
| Msa0356360 | Msa0605480 | 0.807289 | 5.436470e-50 | -8.615850e-47 |
| Msa0356360 | Msa0646440 | 0.805350 | 1.393001e-49 | -8.615850e-47 |
| Msa0356360 | Msa0657710 | 0.818387 | 2.013309e-52 | -8.615850e-47 |
| Msa0356360 | Msa0659230 | 0.816410 | 5.609075e-52 | -8.615850e-47 |
| Msa0356360 | Msa0673620 | -0.809559 | 1.782713e-50 | -8.615850e-47 |
| Msa0356360 | Msa0680460 | 0.820788 | 5.699266e-53 | -8.615850e-47 |
| Msa0356360 | Msa0682910 | 0.831098 | 2.023664e-55 | -8.615850e-47 |
| Msa0356360 | Msa0702800 | 0.819568 | 1.084680e-52 | -8.615850e-47 |
| Msa0356360 | Msa0707330 | 0.806818 | 6.839840e-50 | -8.615850e-47 |
| Msa0356360 | Msa0716980 | 0.803056 | 4.181421e-49 | -8.615850e-47 |
| Msa0356360 | Msa0742370 | -0.806888 | 6.610230e-50 | -8.615850e-47 |
| Msa0356360 | Msa0758880 | -0.805441 | 1.332808e-49 | -8.615850e-47 |
| Msa0356360 | Msa0763370 | 0.803713 | 3.056355e-49 | -8.615850e-47 |
| Msa0356360 | Msa0800120 | 0.806091 | 9.734368e-50 | -8.615850e-47 |
| Msa0356360 | Msa0801920 | -0.811823 | 5.773745e-51 | -8.615850e-47 |
| Msa0356360 | Msa0823480 | -0.814033 | 1.892653e-51 | -8.615850e-47 |
| Msa0356360 | Msa0828960 | 0.817141 | 3.846748e-52 | -8.615850e-47 |
| Msa0356360 | Msa0838120 | -0.813551 | 2.416776e-51 | -8.615850e-47 |
| Msa0356360 | Msa0851760 | 0.800431 | 1.446137e-48 | -8.615850e-47 |
| Msa0356360 | Msa0896920 | 0.809783 | 1.595084e-50 | -8.615850e-47 |
| Msa0356360 | Msa0909260 | 0.829291 | 5.588853e-55 | -8.615850e-47 |
| Msa0356360 | Msa0910170 | 0.831568 | 1.550657e-55 | -8.615850e-47 |
| Msa0356360 | Msa0964400 | -0.806343 | 8.614421e-50 | -8.615850e-47 |
| Msa0356360 | Msa1005370 | 0.809484 | 1.849361e-50 | -8.615850e-47 |
| Msa0356360 | Msa1015360 | 0.805433 | 1.338337e-49 | -8.615850e-47 |
| Msa0356360 | Msa1024480 | 0.814239 | 1.705093e-51 | -8.615850e-47 |
| Msa0356360 | Msa1029840 | 0.820413 | 6.949303e-53 | -8.615850e-47 |
| Msa0356360 | Msa1041910 | 0.802794 | 4.737476e-49 | -8.615850e-47 |
| Msa0356360 | Msa1076280 | 0.800288 | 1.546328e-48 | -8.615850e-47 |
| Msa0356360 | Msa1088740 | -0.816136 | 6.461060e-52 | -8.615850e-47 |
| Msa0356360 | Msa1094810 | 0.803090 | 4.114814e-49 | -8.615850e-47 |
| Msa0356360 | Msa1103450 | 0.826120 | 3.228902e-54 | -8.615850e-47 |
| Msa0356360 | Msa1111910 | 0.807841 | 4.150813e-50 | -8.615850e-47 |
| Msa0356360 | Msa1123730 | 0.811348 | 7.321376e-51 | -8.615850e-47 |
| Msa0356360 | Msa1147010 | 0.836494 | 9.055734e-57 | -8.615850e-47 |
| Msa0356360 | Msa1154060 | 0.809121 | 2.212220e-50 | -8.615850e-47 |
| Msa0356360 | Msa1154320 | 0.805952 | 1.040970e-49 | -8.615850e-47 |
| Msa0356360 | Msa1165460 | 0.800317 | 1.525078e-48 | -8.615850e-47 |
| Msa0356360 | Msa1169870 | 0.800002 | 1.767654e-48 | -8.615850e-47 |
| Msa0356360 | Msa1184680 | 0.809390 | 1.937355e-50 | -8.615850e-47 |
| Msa0356360 | Msa1203650 | 0.825767 | 3.916165e-54 | -8.615850e-47 |
| Msa0356360 | Msa1221270 | 0.804557 | 2.040451e-49 | -8.615850e-47 |
| Msa0356360 | Msa1223710 | 0.837049 | 6.535514e-57 | -8.615850e-47 |
| Msa0356360 | Msa1223990 | 0.823544 | 1.308220e-53 | -8.615850e-47 |
| Msa0356360 | Msa1242160 | 0.816063 | 6.706797e-52 | -8.615850e-47 |
| Msa0356360 | Msa1250610 | 0.804568 | 2.029877e-49 | -8.615850e-47 |
| Msa0356360 | Msa1263110 | 0.818228 | 2.187160e-52 | -8.615850e-47 |
| Msa0356360 | Msa1263120 | 0.803609 | 3.212843e-49 | -8.615850e-47 |
| Msa0356360 | Msa1263370 | 0.813578 | 2.384791e-51 | -8.615850e-47 |
| Msa0356360 | Msa1266120 | -0.807882 | 4.069036e-50 | -8.615850e-47 |
| Msa0356360 | Msa1268360 | 0.807712 | 4.421320e-50 | -8.615850e-47 |
| Msa0356360 | Msa1273320 | 0.844037 | 9.684464e-59 | -8.615850e-47 |
| Msa0356360 | Msa1279200 | -0.801312 | 9.554747e-49 | -8.615850e-47 |
| Msa0356360 | Msa1281780 | 0.817441 | 3.292167e-52 | -8.615850e-47 |
| Msa0356360 | Msa1283930 | 0.819197 | 1.318267e-52 | -8.615850e-47 |
| Msa0356360 | Msa1284020 | 0.831989 | 1.220659e-55 | -8.615850e-47 |
| Msa0356360 | Msa1287100 | -0.803894 | 2.803862e-49 | -8.615850e-47 |
| Msa0356360 | Msa1295210 | -0.802011 | 6.867532e-49 | -8.615850e-47 |
| Msa0356360 | Msa1295480 | -0.809977 | 1.449085e-50 | -8.615850e-47 |
| Msa0356360 | Msa1301280 | -0.828288 | 9.772761e-55 | -8.615850e-47 |
| Msa0356360 | Msa1302630 | 0.819632 | 1.048614e-52 | -8.615850e-47 |
| Msa0356360 | Msa1321010 | 0.841514 | 4.536580e-58 | -8.615850e-47 |
| Msa0356360 | Msa1322960 | 0.835255 | 1.866064e-56 | -8.615850e-47 |
| Msa0356360 | Msa1323070 | 0.808406 | 3.145551e-50 | -8.615850e-47 |
| Msa0356360 | Msa1326640 | 0.803197 | 3.910318e-49 | -8.615850e-47 |
| Msa0356360 | Msa1326680 | 0.810164 | 1.320876e-50 | -8.615850e-47 |
| Msa0356360 | Msa1362520 | 0.815974 | 7.021115e-52 | -8.615850e-47 |
| Msa0356360 | Msa1379270 | -0.808575 | 2.894900e-50 | -8.615850e-47 |
| Msa0356360 | Msa1380740 | 0.818535 | 1.863397e-52 | -8.615850e-47 |
| Msa0356360 | Msa1400290 | -0.802154 | 6.419083e-49 | -8.615850e-47 |
| Msa0356360 | Msa1407810 | 0.838594 | 2.621537e-57 | -8.615850e-47 |
| Msa0356360 | Msa1417220 | 0.808301 | 3.312806e-50 | -8.615850e-47 |
| Msa0356360 | Msa1424870 | 0.822649 | 2.115639e-53 | -8.615850e-47 |
| Msa0356360 | Msa1433360 | 0.840693 | 7.458331e-58 | -8.615850e-47 |
| Msa0356360 | Msa1433570 | 0.819964 | 8.805251e-53 | -8.615850e-47 |
| Msa0356360 | Msa1436400 | 0.810467 | 1.136329e-50 | -8.615850e-47 |
| Msa0356360 | Msa1437780 | 0.840900 | 6.580537e-58 | -8.615850e-47 |
| Msa0356360 | Msa1445530 | 0.840640 | 7.700752e-58 | -8.615850e-47 |
| Msa0356360 | Msa1455360 | 0.806189 | 9.280665e-50 | -8.615850e-47 |
| Msa0356360 | Msa1461660 | 0.800962 | 1.126974e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356360 | MtrunA17_Chr3g0090571 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 5.23e-82 | 238 |
| Msa0356360 | MtrunA17_Chr7g0231991 | 55.556 | 135 | 53 | 3 | 23 | 154 | 2 | 132 | 2.96e-47 | 149 |
| Msa0356360 | MtrunA17_Chr7g0232011 | 52.258 | 155 | 63 | 6 | 1 | 154 | 1 | 145 | 1.00e-46 | 149 |
| Msa0356360 | MtrunA17_Chr6g0456951 | 49.333 | 150 | 57 | 6 | 1 | 148 | 1 | 133 | 3.21e-37 | 124 |
| Msa0356360 | MtrunA17_Chr3g0111281 | 46.154 | 156 | 60 | 5 | 1 | 150 | 1 | 138 | 1.42e-34 | 117 |
| Msa0356360 | MtrunA17_Chr7g0236791 | 47.656 | 128 | 62 | 3 | 1 | 127 | 1 | 124 | 5.18e-34 | 116 |
| Msa0356360 | MtrunA17_Chr3g0111131 | 48.507 | 134 | 60 | 3 | 1 | 132 | 1 | 127 | 5.47e-34 | 115 |
| Msa0356360 | MtrunA17_Chr3g0111111 | 42.581 | 155 | 67 | 6 | 1 | 150 | 1 | 138 | 3.16e-33 | 114 |
| Msa0356360 | MtrunA17_Chr7g0236801 | 49.231 | 130 | 58 | 6 | 1 | 127 | 1 | 125 | 5.01e-33 | 114 |
| Msa0356360 | MtrunA17_Chr6g0464071 | 45.033 | 151 | 63 | 6 | 1 | 150 | 1 | 132 | 2.02e-30 | 107 |
| Msa0356360 | MtrunA17_Chr3g0111071 | 45.255 | 137 | 67 | 5 | 1 | 136 | 1 | 130 | 8.66e-30 | 105 |
| Msa0356360 | MtrunA17_Chr8g0344771 | 56.383 | 94 | 38 | 3 | 36 | 128 | 11 | 102 | 9.56e-30 | 105 |
| Msa0356360 | MtrunA17_Chr6g0468621 | 44.805 | 154 | 64 | 8 | 1 | 153 | 1 | 134 | 1.15e-29 | 105 |
| Msa0356360 | MtrunA17_Chr3g0111261 | 45.223 | 157 | 56 | 6 | 1 | 150 | 1 | 134 | 1.34e-29 | 105 |
| Msa0356360 | MtrunA17_Chr6g0456991 | 58.696 | 92 | 35 | 3 | 37 | 127 | 16 | 105 | 1.50e-29 | 103 |
| Msa0356360 | MtrunA17_Chr8g0344791 | 54.455 | 101 | 43 | 3 | 37 | 136 | 12 | 110 | 2.14e-29 | 103 |
| Msa0356360 | MtrunA17_Chr8g0344801 | 52.778 | 108 | 37 | 4 | 42 | 148 | 1 | 95 | 8.41e-29 | 102 |
| Msa0356360 | MtrunA17_Chr8g0357331 | 55.556 | 81 | 36 | 0 | 74 | 154 | 21 | 101 | 3.33e-28 | 100 |
| Msa0356360 | MtrunA17_Chr3g0111351 | 40.714 | 140 | 73 | 5 | 1 | 137 | 9 | 141 | 7.10e-28 | 100 |
| Msa0356360 | MtrunA17_Chr6g0468601 | 41.558 | 154 | 72 | 6 | 1 | 153 | 1 | 137 | 3.47e-27 | 99.0 |
| Msa0356360 | MtrunA17_Chr3g0104571 | 39.241 | 158 | 68 | 6 | 1 | 152 | 1 | 136 | 6.19e-27 | 98.2 |
| Msa0356360 | MtrunA17_Chr3g0111241 | 44.715 | 123 | 56 | 3 | 1 | 119 | 1 | 115 | 7.59e-27 | 97.8 |
| Msa0356360 | MtrunA17_Chr3g0111081 | 43.066 | 137 | 70 | 5 | 1 | 136 | 1 | 130 | 5.58e-26 | 95.9 |
| Msa0356360 | MtrunA17_Chr3g0111191 | 41.463 | 123 | 61 | 4 | 1 | 118 | 1 | 117 | 8.47e-25 | 92.0 |
| Msa0356360 | MtrunA17_Chr1g0153591 | 44.355 | 124 | 52 | 6 | 1 | 124 | 1 | 107 | 2.23e-22 | 85.9 |
| Msa0356360 | MtrunA17_Chr4g0012121 | 41.139 | 158 | 76 | 5 | 1 | 154 | 1 | 145 | 2.51e-22 | 86.7 |
| Msa0356360 | MtrunA17_Chr3g0092701 | 66.129 | 62 | 21 | 0 | 1 | 62 | 1 | 62 | 2.97e-22 | 84.3 |
| Msa0356360 | MtrunA17_Chr3g0111221 | 46.512 | 86 | 45 | 1 | 49 | 134 | 23 | 107 | 1.95e-21 | 83.6 |
| Msa0356360 | MtrunA17_Chr3g0111311 | 58.209 | 67 | 23 | 3 | 53 | 119 | 29 | 90 | 2.41e-20 | 80.1 |
| Msa0356360 | MtrunA17_Chr7g0225821 | 41.270 | 126 | 66 | 6 | 1 | 124 | 1 | 120 | 6.59e-20 | 79.7 |
| Msa0356360 | MtrunA17_Chr8g0359071 | 34.899 | 149 | 67 | 6 | 3 | 144 | 4 | 129 | 3.11e-19 | 78.6 |
| Msa0356360 | MtrunA17_Chr3g0111711 | 40.496 | 121 | 56 | 4 | 1 | 117 | 1 | 109 | 1.17e-18 | 76.3 |
| Msa0356360 | MtrunA17_Chr3g0092851 | 58.730 | 63 | 24 | 2 | 1 | 61 | 1 | 63 | 5.25e-17 | 70.9 |
| Msa0356360 | MtrunA17_Chr3g0092881 | 57.576 | 66 | 27 | 1 | 1 | 65 | 1 | 66 | 2.17e-16 | 69.3 |
| Msa0356360 | MtrunA17_Chr3g0092841 | 57.576 | 66 | 27 | 1 | 1 | 65 | 1 | 66 | 4.72e-16 | 68.6 |
| Msa0356360 | MtrunA17_Chr3g0092801 | 57.576 | 66 | 27 | 1 | 1 | 65 | 1 | 66 | 4.72e-16 | 68.6 |
| Msa0356360 | MtrunA17_Chr3g0092704 | 80.488 | 41 | 8 | 0 | 1 | 41 | 1 | 41 | 8.77e-16 | 68.2 |
| Msa0356360 | MtrunA17_Chr6g0483481 | 39.316 | 117 | 57 | 4 | 23 | 132 | 5 | 114 | 4.45e-15 | 67.4 |
| Msa0356360 | MtrunA17_Chr3g0092901 | 57.895 | 57 | 23 | 1 | 1 | 57 | 1 | 56 | 1.41e-14 | 64.7 |
| Msa0356360 | MtrunA17_Chr3g0092771 | 93.750 | 32 | 2 | 0 | 1 | 32 | 1 | 32 | 2.35e-14 | 63.5 |
| Msa0356360 | MtrunA17_Chr3g0111201 | 47.619 | 63 | 22 | 1 | 88 | 150 | 3 | 54 | 7.94e-14 | 62.4 |
| Msa0356360 | MtrunA17_Chr3g0090581 | 57.143 | 49 | 21 | 0 | 21 | 69 | 22 | 70 | 8.90e-13 | 60.1 |
| Msa0356360 | MtrunA17_Chr3g0092941 | 81.081 | 37 | 6 | 1 | 1 | 36 | 1 | 37 | 1.56e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATGTTCAGAACTAAT+TGG | 0.232965 | 3_1:-35122145 | None:intergenic |
| CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3_1:+35122253 | Msa0356360:CDS |
| AGCAGGGAGCTGTCCGTCTC+AGG | 0.357261 | 3_1:+35122027 | Msa0356360:CDS |
| TTATGTTAAGCTTGCTACTT+TGG | 0.363249 | 3_1:+35121745 | Msa0356360:CDS |
| AGATTGTAGTTGTATCCCTT+GGG | 0.363389 | 3_1:+35122096 | Msa0356360:CDS |
| CTGCTTCAACGTTCTTCGTC+TGG | 0.376847 | 3_1:-35122009 | None:intergenic |
| TTGAAGAAATTGTTTACTAC+AGG | 0.382004 | 3_1:-35122331 | None:intergenic |
| GAGATTGTAGTTGTATCCCT+TGG | 0.382260 | 3_1:+35122095 | Msa0356360:CDS |
| AGCTTAACATAAGTCATTGT+TGG | 0.383649 | 3_1:-35121734 | None:intergenic |
| AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3_1:+35122378 | Msa0356360:CDS |
| GCAGAACGTTACTTCAAGAT+TGG | 0.399752 | 3_1:+35122301 | Msa0356360:CDS |
| AAAACAACCTTGGATTTCTT+CGG | 0.405097 | 3_1:+35122480 | Msa0356360:three_prime_UTR |
| CCATATTCAATATCAGCATT+AGG | 0.437256 | 3_1:-35122253 | None:intergenic |
| CAAGTCAAATATTGAACAAA+AGG | 0.441013 | 3_1:-35122053 | None:intergenic |
| TACTTTAAATAAAACAACCT+TGG | 0.442398 | 3_1:+35122470 | Msa0356360:three_prime_UTR |
| TGAGAAATATCATTCTTAAG+TGG | 0.452118 | 3_1:-35122407 | None:intergenic |
| TCTTCGGTATGTATTATGCA+TGG | 0.463568 | 3_1:+35122496 | Msa0356360:three_prime_UTR |
| GAAATTGTTTACTACAGGGT+TGG | 0.463585 | 3_1:-35122326 | None:intergenic |
| CTTCGGTATGTATTATGCAT+GGG | 0.481487 | 3_1:+35122497 | Msa0356360:three_prime_UTR |
| CAGACGAAGAACGTTGAAGC+AGG | 0.486278 | 3_1:+35122010 | Msa0356360:CDS |
| GAGTGCATCAAGAAGGGAAG+TGG | 0.522512 | 3_1:+35122211 | Msa0356360:CDS |
| TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3_1:+35122204 | Msa0356360:CDS |
| GATTGTAGTTGTATCCCTTG+GGG | 0.572574 | 3_1:+35122097 | Msa0356360:CDS |
| GCAGGGAGCTGTCCGTCTCA+GGG | 0.576016 | 3_1:+35122028 | Msa0356360:CDS |
| ACTTCCCTTCTTGATGCACT+CGG | 0.605609 | 3_1:-35122209 | None:intergenic |
| ACAAATATACATACAGAATG+TGG | 0.609862 | 3_1:-35121783 | None:intergenic |
| TGAAGAAATTGTTTACTACA+GGG | 0.620608 | 3_1:-35122330 | None:intergenic |
| ATATTTGACTTGACACCATG+CGG | 0.621402 | 3_1:+35122064 | Msa0356360:CDS |
| CGTTCTGCTTCATCTACAGA+GGG | 0.621559 | 3_1:-35122286 | None:intergenic |
| CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3_1:+35122205 | Msa0356360:CDS |
| GAACAAAAGGAACCCTGAGA+CGG | 0.632996 | 3_1:-35122040 | None:intergenic |
| AGACGAAGAACGTTGAAGCA+GGG | 0.637674 | 3_1:+35122011 | Msa0356360:CDS |
| ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3_1:+35122257 | Msa0356360:CDS |
| AGTGCATCAAGAAGGGAAGT+GGG | 0.648471 | 3_1:+35122212 | Msa0356360:CDS |
| CAATCTCTGAGATTGCCGCA+TGG | 0.655920 | 3_1:-35122079 | None:intergenic |
| ACGTTCTGCTTCATCTACAG+AGG | 0.657683 | 3_1:-35122287 | None:intergenic |
| ATACATACCGAAGAAATCCA+AGG | 0.663976 | 3_1:-35122487 | None:intergenic |
| ATTGTAGTTGTATCCCTTGG+GGG | 0.670258 | 3_1:+35122098 | Msa0356360:CDS |
| ACATAATATGAAGATGATCG+AGG | 0.692790 | 3_1:+35122159 | Msa0356360:CDS |
| TAGATGCATGATAACATGCA+TGG | 0.728301 | 3_1:-35122446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTATATTTGTTTAACAT+TGG | + | chr3_1:35121793-35121812 | Msa0356360:intron | 15.0% |
| !! | ATGTATATTTGTTTAACATT+GGG | + | chr3_1:35121794-35121813 | Msa0356360:intron | 15.0% |
| !! | TATGTATATTTGTTTAACAT+TGG | + | chr3_1:35121793-35121812 | Msa0356360:intron | 15.0% |
| !! | ATGTATATTTGTTTAACATT+GGG | + | chr3_1:35121794-35121813 | Msa0356360:intron | 15.0% |
| !! | TCGATATATATTTATGTGTT+AGG | + | chr3_1:35121830-35121849 | Msa0356360:intron | 20.0% |
| !! | TGTATATATTTACGAAAGTT+TGG | - | chr3_1:35121932-35121951 | None:intergenic | 20.0% |
| !! | ATATTATGTTCAGAACTAAT+TGG | - | chr3_1:35122148-35122167 | None:intergenic | 20.0% |
| !! | TACTTTAAATAAAACAACCT+TGG | + | chr3_1:35122470-35122489 | Msa0356360:three_prime_UTR | 20.0% |
| !! | TCGATATATATTTATGTGTT+AGG | + | chr3_1:35121830-35121849 | Msa0356360:intron | 20.0% |
| !! | TGTATATATTTACGAAAGTT+TGG | - | chr3_1:35121932-35121951 | None:intergenic | 20.0% |
| !! | ATATTATGTTCAGAACTAAT+TGG | - | chr3_1:35122148-35122167 | None:intergenic | 20.0% |
| !! | TACTTTAAATAAAACAACCT+TGG | + | chr3_1:35122470-35122489 | Msa0356360:three_prime_UTR | 20.0% |
| ! | ACAAATATACATACAGAATG+TGG | - | chr3_1:35121786-35121805 | None:intergenic | 25.0% |
| ! | CACATAAATATATATCGATG+AGG | - | chr3_1:35121828-35121847 | None:intergenic | 25.0% |
| ! | CAAGTCAAATATTGAACAAA+AGG | - | chr3_1:35122056-35122075 | None:intergenic | 25.0% |
| ! | TGAAGAAATTGTTTACTACA+GGG | - | chr3_1:35122333-35122352 | None:intergenic | 25.0% |
| ! | TTGAAGAAATTGTTTACTAC+AGG | - | chr3_1:35122334-35122353 | None:intergenic | 25.0% |
| ! | TGAGAAATATCATTCTTAAG+TGG | - | chr3_1:35122410-35122429 | None:intergenic | 25.0% |
| ! | ACAAATATACATACAGAATG+TGG | - | chr3_1:35121786-35121805 | None:intergenic | 25.0% |
| ! | CACATAAATATATATCGATG+AGG | - | chr3_1:35121828-35121847 | None:intergenic | 25.0% |
| ! | CAAGTCAAATATTGAACAAA+AGG | - | chr3_1:35122056-35122075 | None:intergenic | 25.0% |
| ! | TGAAGAAATTGTTTACTACA+GGG | - | chr3_1:35122333-35122352 | None:intergenic | 25.0% |
| ! | TTGAAGAAATTGTTTACTAC+AGG | - | chr3_1:35122334-35122353 | None:intergenic | 25.0% |
| ! | TGAGAAATATCATTCTTAAG+TGG | - | chr3_1:35122410-35122429 | None:intergenic | 25.0% |
| AGCTTAACATAAGTCATTGT+TGG | - | chr3_1:35121737-35121756 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | + | chr3_1:35121745-35121764 | Msa0356360:CDS | 30.0% |
| TACATTATTCACACGTGTAT+CGG | + | chr3_1:35121948-35121967 | Msa0356360:intron | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | + | chr3_1:35122159-35122178 | Msa0356360:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | - | chr3_1:35122256-35122275 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | + | chr3_1:35122253-35122272 | Msa0356360:CDS | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | + | chr3_1:35122257-35122276 | Msa0356360:CDS | 30.0% | |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | - | chr3_1:35122362-35122381 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | + | chr3_1:35122372-35122391 | Msa0356360:CDS | 30.0% | |
| AAAACAACCTTGGATTTCTT+CGG | + | chr3_1:35122480-35122499 | Msa0356360:three_prime_UTR | 30.0% | |
| AGCTTAACATAAGTCATTGT+TGG | - | chr3_1:35121737-35121756 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | + | chr3_1:35121745-35121764 | Msa0356360:CDS | 30.0% |
| TACATTATTCACACGTGTAT+CGG | + | chr3_1:35121948-35121967 | Msa0356360:intron | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | + | chr3_1:35122159-35122178 | Msa0356360:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | - | chr3_1:35122256-35122275 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | + | chr3_1:35122253-35122272 | Msa0356360:CDS | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | + | chr3_1:35122257-35122276 | Msa0356360:CDS | 30.0% | |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | - | chr3_1:35122362-35122381 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | + | chr3_1:35122372-35122391 | Msa0356360:CDS | 30.0% | |
| AAAACAACCTTGGATTTCTT+CGG | + | chr3_1:35122480-35122499 | Msa0356360:three_prime_UTR | 30.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | - | chr3_1:35121976-35121995 | None:intergenic | 35.0% | |
| !! | ATATTTGACTTGACACCATG+CGG | + | chr3_1:35122064-35122083 | Msa0356360:CDS | 35.0% |
| AGATTGTAGTTGTATCCCTT+GGG | + | chr3_1:35122096-35122115 | Msa0356360:CDS | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | - | chr3_1:35122190-35122209 | None:intergenic | 35.0% |
| GAAATTGTTTACTACAGGGT+TGG | - | chr3_1:35122329-35122348 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | - | chr3_1:35122449-35122468 | None:intergenic | 35.0% | |
| ATACATACCGAAGAAATCCA+AGG | - | chr3_1:35122490-35122509 | None:intergenic | 35.0% | |
| TCTTCGGTATGTATTATGCA+TGG | + | chr3_1:35122496-35122515 | Msa0356360:three_prime_UTR | 35.0% | |
| CTTCGGTATGTATTATGCAT+GGG | + | chr3_1:35122497-35122516 | Msa0356360:three_prime_UTR | 35.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | - | chr3_1:35121976-35121995 | None:intergenic | 35.0% | |
| !! | ATATTTGACTTGACACCATG+CGG | + | chr3_1:35122064-35122083 | Msa0356360:CDS | 35.0% |
| AGATTGTAGTTGTATCCCTT+GGG | + | chr3_1:35122096-35122115 | Msa0356360:CDS | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | - | chr3_1:35122190-35122209 | None:intergenic | 35.0% |
| GAAATTGTTTACTACAGGGT+TGG | - | chr3_1:35122329-35122348 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | - | chr3_1:35122449-35122468 | None:intergenic | 35.0% | |
| ATACATACCGAAGAAATCCA+AGG | - | chr3_1:35122490-35122509 | None:intergenic | 35.0% | |
| TCTTCGGTATGTATTATGCA+TGG | + | chr3_1:35122496-35122515 | Msa0356360:three_prime_UTR | 35.0% | |
| CTTCGGTATGTATTATGCAT+GGG | + | chr3_1:35122497-35122516 | Msa0356360:three_prime_UTR | 35.0% | |
| ACGATTACTGCAAATGGCAA+AGG | - | chr3_1:35121989-35122008 | None:intergenic | 40.0% | |
| GAGATTGTAGTTGTATCCCT+TGG | + | chr3_1:35122095-35122114 | Msa0356360:CDS | 40.0% | |
| GATTGTAGTTGTATCCCTTG+GGG | + | chr3_1:35122097-35122116 | Msa0356360:CDS | 40.0% | |
| ATTGTAGTTGTATCCCTTGG+GGG | + | chr3_1:35122098-35122117 | Msa0356360:CDS | 40.0% | |
| TACCAAAAAATAGCCCCCAA+GGG | - | chr3_1:35122114-35122133 | None:intergenic | 40.0% | |
| GCAGAACGTTACTTCAAGAT+TGG | + | chr3_1:35122301-35122320 | Msa0356360:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | + | chr3_1:35122378-35122397 | Msa0356360:CDS | 40.0% | |
| ACGATTACTGCAAATGGCAA+AGG | - | chr3_1:35121989-35122008 | None:intergenic | 40.0% | |
| GAGATTGTAGTTGTATCCCT+TGG | + | chr3_1:35122095-35122114 | Msa0356360:CDS | 40.0% | |
| GATTGTAGTTGTATCCCTTG+GGG | + | chr3_1:35122097-35122116 | Msa0356360:CDS | 40.0% | |
| ATTGTAGTTGTATCCCTTGG+GGG | + | chr3_1:35122098-35122117 | Msa0356360:CDS | 40.0% | |
| TACCAAAAAATAGCCCCCAA+GGG | - | chr3_1:35122114-35122133 | None:intergenic | 40.0% | |
| GCAGAACGTTACTTCAAGAT+TGG | + | chr3_1:35122301-35122320 | Msa0356360:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | + | chr3_1:35122378-35122397 | Msa0356360:CDS | 40.0% | |
| GTCTGGACGATTACTGCAAA+TGG | - | chr3_1:35121995-35122014 | None:intergenic | 45.0% | |
| AGACGAAGAACGTTGAAGCA+GGG | + | chr3_1:35122011-35122030 | Msa0356360:CDS | 45.0% | |
| GAACAAAAGGAACCCTGAGA+CGG | - | chr3_1:35122043-35122062 | None:intergenic | 45.0% | |
| !!! | ATCCCTTGGGGGCTATTTTT+TGG | + | chr3_1:35122109-35122128 | Msa0356360:CDS | 45.0% |
| GTACCAAAAAATAGCCCCCA+AGG | - | chr3_1:35122115-35122134 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | - | chr3_1:35122212-35122231 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | + | chr3_1:35122212-35122231 | Msa0356360:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | - | chr3_1:35122289-35122308 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | - | chr3_1:35122290-35122309 | None:intergenic | 45.0% | |
| GTCTGGACGATTACTGCAAA+TGG | - | chr3_1:35121995-35122014 | None:intergenic | 45.0% | |
| AGACGAAGAACGTTGAAGCA+GGG | + | chr3_1:35122011-35122030 | Msa0356360:CDS | 45.0% | |
| GAACAAAAGGAACCCTGAGA+CGG | - | chr3_1:35122043-35122062 | None:intergenic | 45.0% | |
| !!! | ATCCCTTGGGGGCTATTTTT+TGG | + | chr3_1:35122109-35122128 | Msa0356360:CDS | 45.0% |
| GTACCAAAAAATAGCCCCCA+AGG | - | chr3_1:35122115-35122134 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | - | chr3_1:35122212-35122231 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | + | chr3_1:35122212-35122231 | Msa0356360:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | - | chr3_1:35122289-35122308 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | - | chr3_1:35122290-35122309 | None:intergenic | 45.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | - | chr3_1:35122012-35122031 | None:intergenic | 50.0% | |
| CAGACGAAGAACGTTGAAGC+AGG | + | chr3_1:35122010-35122029 | Msa0356360:CDS | 50.0% | |
| !! | CAATCTCTGAGATTGCCGCA+TGG | - | chr3_1:35122082-35122101 | None:intergenic | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | + | chr3_1:35122204-35122223 | Msa0356360:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | + | chr3_1:35122205-35122224 | Msa0356360:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | + | chr3_1:35122211-35122230 | Msa0356360:CDS | 50.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | - | chr3_1:35122012-35122031 | None:intergenic | 50.0% | |
| CAGACGAAGAACGTTGAAGC+AGG | + | chr3_1:35122010-35122029 | Msa0356360:CDS | 50.0% | |
| !! | CAATCTCTGAGATTGCCGCA+TGG | - | chr3_1:35122082-35122101 | None:intergenic | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | + | chr3_1:35122204-35122223 | Msa0356360:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | + | chr3_1:35122205-35122224 | Msa0356360:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | + | chr3_1:35122211-35122230 | Msa0356360:CDS | 50.0% | |
| AGCAGGGAGCTGTCCGTCTC+AGG | + | chr3_1:35122027-35122046 | Msa0356360:CDS | 65.0% | |
| GCAGGGAGCTGTCCGTCTCA+GGG | + | chr3_1:35122028-35122047 | Msa0356360:CDS | 65.0% | |
| AGCAGGGAGCTGTCCGTCTC+AGG | + | chr3_1:35122027-35122046 | Msa0356360:CDS | 65.0% | |
| GCAGGGAGCTGTCCGTCTCA+GGG | + | chr3_1:35122028-35122047 | Msa0356360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 35121692 | 35122530 | 35121692 | ID=Msa0356360;Name=Msa0356360 |
| chr3_1 | mRNA | 35121692 | 35122530 | 35121692 | ID=Msa0356360-mRNA-1;Parent=Msa0356360;Name=Msa0356360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=48|1|1|1|1|1|2|116|154 |
| chr3_1 | exon | 35121692 | 35121791 | 35121692 | ID=Msa0356360-mRNA-1:exon:6527;Parent=Msa0356360-mRNA-1 |
| chr3_1 | exon | 35122002 | 35122530 | 35122002 | ID=Msa0356360-mRNA-1:exon:6528;Parent=Msa0356360-mRNA-1 |
| chr3_1 | five_prime_UTR | 35121692 | 35121739 | 35121692 | ID=Msa0356360-mRNA-1:five_prime_utr;Parent=Msa0356360-mRNA-1 |
| chr3_1 | CDS | 35121740 | 35121791 | 35121740 | ID=Msa0356360-mRNA-1:cds;Parent=Msa0356360-mRNA-1 |
| chr3_1 | CDS | 35122002 | 35122414 | 35122002 | ID=Msa0356360-mRNA-1:cds;Parent=Msa0356360-mRNA-1 |
| chr3_1 | three_prime_UTR | 35122415 | 35122530 | 35122415 | ID=Msa0356360-mRNA-1:three_prime_utr;Parent=Msa0356360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
