Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449290 | XP_013459315.1 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 1.38e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449290 | sp|Q39837|ALB1_SOYBN | 52.632 | 114 | 50 | 2 | 9 | 122 | 1 | 110 | 1.55e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449290 | I3T793 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 6.60e-78 | 237 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025570 | Msa0449290 | 0.837873 | 4.019932e-57 | -8.615850e-47 |
| Msa0073110 | Msa0449290 | 0.838861 | 2.236006e-57 | -8.615850e-47 |
| Msa0121320 | Msa0449290 | 0.808005 | 3.829685e-50 | -8.615850e-47 |
| Msa0163690 | Msa0449290 | 0.803260 | 3.795210e-49 | -8.615850e-47 |
| Msa0175060 | Msa0449290 | 0.802478 | 5.504913e-49 | -8.615850e-47 |
| Msa0203880 | Msa0449290 | 0.808026 | 3.790559e-50 | -8.615850e-47 |
| Msa0218060 | Msa0449290 | 0.814166 | 1.769574e-51 | -8.615850e-47 |
| Msa0449290 | Msa0449360 | 0.904130 | 1.691634e-79 | -8.615850e-47 |
| Msa0449290 | Msa0449380 | 0.901677 | 2.102944e-78 | -8.615850e-47 |
| Msa0449290 | Msa0449940 | 0.888230 | 7.098380e-73 | -8.615850e-47 |
| Msa0449290 | Msa0540640 | 0.824890 | 6.315743e-54 | -8.615850e-47 |
| Msa0449290 | Msa0547370 | 0.810227 | 1.279928e-50 | -8.615850e-47 |
| Msa0449290 | Msa0549970 | 0.810172 | 1.315322e-50 | -8.615850e-47 |
| Msa0449290 | Msa0567330 | 0.823051 | 1.705363e-53 | -8.615850e-47 |
| Msa0449290 | Msa0567570 | 0.813224 | 2.852679e-51 | -8.615850e-47 |
| Msa0449290 | Msa0576320 | 0.816974 | 4.192999e-52 | -8.615850e-47 |
| Msa0449290 | Msa0587710 | 0.824570 | 7.515691e-54 | -8.615850e-47 |
| Msa0449290 | Msa0602100 | 0.801385 | 9.233624e-49 | -8.615850e-47 |
| Msa0449290 | Msa0605480 | 0.822019 | 2.963034e-53 | -8.615850e-47 |
| Msa0449290 | Msa0629720 | 0.802438 | 5.610093e-49 | -8.615850e-47 |
| Msa0449290 | Msa0646440 | 0.817683 | 2.903809e-52 | -8.615850e-47 |
| Msa0449290 | Msa0659230 | 0.821023 | 5.032135e-53 | -8.615850e-47 |
| Msa0449290 | Msa0680460 | 0.802197 | 6.289121e-49 | -8.615850e-47 |
| Msa0449290 | Msa0682910 | 0.809904 | 1.502479e-50 | -8.615850e-47 |
| Msa0449290 | Msa0716980 | 0.818014 | 2.444339e-52 | -8.615850e-47 |
| Msa0449290 | Msa0896920 | 0.817713 | 2.859673e-52 | -8.615850e-47 |
| Msa0449290 | Msa0909260 | 0.811265 | 7.632169e-51 | -8.615850e-47 |
| Msa0449290 | Msa0910170 | 0.812400 | 4.320868e-51 | -8.615850e-47 |
| Msa0449290 | Msa1024480 | 0.822645 | 2.120676e-53 | -8.615850e-47 |
| Msa0449290 | Msa1029820 | 0.805589 | 1.240959e-49 | -8.615850e-47 |
| Msa0449290 | Msa1041910 | 0.800038 | 1.738313e-48 | -8.615850e-47 |
| Msa0449290 | Msa1103450 | 0.836340 | 9.908623e-57 | -8.615850e-47 |
| Msa0449290 | Msa1107320 | 0.801551 | 8.535547e-49 | -8.615850e-47 |
| Msa0449290 | Msa1147010 | 0.842584 | 2.365678e-58 | -8.615850e-47 |
| Msa0449290 | Msa1160540 | 0.817016 | 4.102558e-52 | -8.615850e-47 |
| Msa0449290 | Msa1167960 | 0.800326 | 1.518724e-48 | -8.615850e-47 |
| Msa0449290 | Msa1223710 | 0.819844 | 9.381455e-53 | -8.615850e-47 |
| Msa0449290 | Msa1223990 | 0.807729 | 4.384566e-50 | -8.615850e-47 |
| Msa0449290 | Msa1242160 | 0.801774 | 7.682732e-49 | -8.615850e-47 |
| Msa0449290 | Msa1263110 | 0.806266 | 8.943434e-50 | -8.615850e-47 |
| Msa0449290 | Msa1263370 | 0.810204 | 1.294572e-50 | -8.615850e-47 |
| Msa0449290 | Msa1273320 | 0.821139 | 4.733503e-53 | -8.615850e-47 |
| Msa0449290 | Msa1283930 | 0.805939 | 1.047667e-49 | -8.615850e-47 |
| Msa0449290 | Msa1284020 | 0.814443 | 1.536855e-51 | -8.615850e-47 |
| Msa0449290 | Msa1302630 | 0.813039 | 3.131010e-51 | -8.615850e-47 |
| Msa0449290 | Msa1321010 | 0.804548 | 2.049504e-49 | -8.615850e-47 |
| Msa0449290 | Msa1322960 | 0.824458 | 7.986631e-54 | -8.615850e-47 |
| Msa0449290 | Msa1362520 | 0.801280 | 9.700694e-49 | -8.615850e-47 |
| Msa0449290 | Msa1380740 | 0.820479 | 6.713552e-53 | -8.615850e-47 |
| Msa0449290 | Msa1407810 | 0.822800 | 1.951357e-53 | -8.615850e-47 |
| Msa0449290 | Msa1417220 | 0.824822 | 6.554240e-54 | -8.615850e-47 |
| Msa0449290 | Msa1424870 | 0.804069 | 2.577766e-49 | -8.615850e-47 |
| Msa0449290 | Msa1433360 | 0.820904 | 5.359983e-53 | -8.615850e-47 |
| Msa0449290 | Msa1436400 | 0.805075 | 1.590100e-49 | -8.615850e-47 |
| Msa0449290 | Msa1437780 | 0.824304 | 8.680917e-54 | -8.615850e-47 |
| Msa0449290 | Msa1445530 | 0.830798 | 2.397371e-55 | -8.615850e-47 |
| Msa0449290 | Msa1461660 | 0.803372 | 3.598085e-49 | -8.615850e-47 |
| Msa0244310 | Msa0449290 | 0.801158 | 1.027344e-48 | -8.615850e-47 |
| Msa0248320 | Msa0449290 | 0.807852 | 4.127498e-50 | -8.615850e-47 |
| Msa0258010 | Msa0449290 | 0.812972 | 3.239678e-51 | -8.615850e-47 |
| Msa0267710 | Msa0449290 | 0.812098 | 5.030312e-51 | -8.615850e-47 |
| Msa0282830 | Msa0449290 | 0.809723 | 1.643479e-50 | -8.615850e-47 |
| Msa0311540 | Msa0449290 | 0.801278 | 9.710070e-49 | -8.615850e-47 |
| Msa0335340 | Msa0449290 | 0.820400 | 6.998839e-53 | -8.615850e-47 |
| Msa0336460 | Msa0449290 | 0.801821 | 7.513435e-49 | -8.615850e-47 |
| Msa0354550 | Msa0449290 | 0.805662 | 1.197774e-49 | -8.615850e-47 |
| Msa0354600 | Msa0449290 | 0.802393 | 5.731509e-49 | -8.615850e-47 |
| Msa0356180 | Msa0449290 | 0.947059 | 1.401998e-105 | -8.615850e-47 |
| Msa0356200 | Msa0449290 | 0.829290 | 5.592196e-55 | -8.615850e-47 |
| Msa0356240 | Msa0449290 | 0.870415 | 1.485034e-66 | -8.615850e-47 |
| Msa0356250 | Msa0449290 | 0.834939 | 2.242858e-56 | -8.615850e-47 |
| Msa0356270 | Msa0449290 | 0.888502 | 5.579551e-73 | -8.615850e-47 |
| Msa0356320 | Msa0449290 | 0.875584 | 2.746224e-68 | -8.615850e-47 |
| Msa0356360 | Msa0449290 | 0.950350 | 1.975060e-108 | -8.615850e-47 |
| Msa0356380 | Msa0449290 | 0.828514 | 8.618888e-55 | -8.615850e-47 |
| Msa0356410 | Msa0449290 | 0.835333 | 1.783569e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449290 | MtrunA17_Chr3g0090571 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 1.27e-81 | 237 |
| Msa0449290 | MtrunA17_Chr7g0231991 | 56.296 | 135 | 52 | 3 | 23 | 154 | 2 | 132 | 5.88e-48 | 151 |
| Msa0449290 | MtrunA17_Chr7g0232011 | 52.258 | 155 | 63 | 6 | 1 | 154 | 1 | 145 | 4.62e-47 | 149 |
| Msa0449290 | MtrunA17_Chr6g0456951 | 50.000 | 150 | 56 | 6 | 1 | 148 | 1 | 133 | 7.71e-38 | 126 |
| Msa0449290 | MtrunA17_Chr3g0111281 | 46.154 | 156 | 60 | 5 | 1 | 150 | 1 | 138 | 4.35e-35 | 119 |
| Msa0449290 | MtrunA17_Chr3g0111131 | 48.507 | 134 | 60 | 3 | 1 | 132 | 1 | 127 | 3.94e-34 | 116 |
| Msa0449290 | MtrunA17_Chr7g0236791 | 47.656 | 128 | 62 | 3 | 1 | 127 | 1 | 124 | 8.27e-34 | 115 |
| Msa0449290 | MtrunA17_Chr3g0111111 | 41.290 | 155 | 69 | 5 | 1 | 150 | 1 | 138 | 1.90e-33 | 115 |
| Msa0449290 | MtrunA17_Chr7g0236801 | 49.231 | 130 | 58 | 6 | 1 | 127 | 1 | 125 | 1.07e-32 | 113 |
| Msa0449290 | MtrunA17_Chr6g0464071 | 44.667 | 150 | 65 | 5 | 1 | 150 | 1 | 132 | 2.67e-30 | 106 |
| Msa0449290 | MtrunA17_Chr3g0111071 | 45.255 | 137 | 67 | 5 | 1 | 136 | 1 | 130 | 3.44e-30 | 106 |
| Msa0449290 | MtrunA17_Chr8g0344771 | 56.383 | 94 | 38 | 3 | 36 | 128 | 11 | 102 | 3.44e-30 | 106 |
| Msa0449290 | MtrunA17_Chr6g0468621 | 44.805 | 154 | 64 | 8 | 1 | 153 | 1 | 134 | 3.79e-30 | 106 |
| Msa0449290 | MtrunA17_Chr8g0344791 | 54.455 | 101 | 43 | 3 | 37 | 136 | 12 | 110 | 7.30e-30 | 105 |
| Msa0449290 | MtrunA17_Chr3g0111261 | 45.223 | 157 | 56 | 6 | 1 | 150 | 1 | 134 | 1.15e-29 | 105 |
| Msa0449290 | MtrunA17_Chr6g0456991 | 58.696 | 92 | 35 | 3 | 37 | 127 | 16 | 105 | 5.59e-29 | 102 |
| Msa0449290 | MtrunA17_Chr8g0357331 | 55.556 | 81 | 36 | 0 | 74 | 154 | 21 | 101 | 3.63e-28 | 100 |
| Msa0449290 | MtrunA17_Chr8g0344801 | 51.852 | 108 | 38 | 4 | 42 | 148 | 1 | 95 | 4.59e-28 | 100 |
| Msa0449290 | MtrunA17_Chr3g0111351 | 40.714 | 140 | 73 | 5 | 1 | 137 | 9 | 141 | 1.04e-27 | 100 |
| Msa0449290 | MtrunA17_Chr3g0104571 | 39.241 | 158 | 68 | 6 | 1 | 152 | 1 | 136 | 2.96e-27 | 99.0 |
| Msa0449290 | MtrunA17_Chr6g0468601 | 41.558 | 154 | 72 | 6 | 1 | 153 | 1 | 137 | 4.80e-27 | 98.6 |
| Msa0449290 | MtrunA17_Chr3g0111241 | 44.715 | 123 | 56 | 3 | 1 | 119 | 1 | 115 | 1.26e-26 | 97.4 |
| Msa0449290 | MtrunA17_Chr3g0111081 | 43.066 | 137 | 70 | 5 | 1 | 136 | 1 | 130 | 5.11e-26 | 95.9 |
| Msa0449290 | MtrunA17_Chr3g0111191 | 41.463 | 123 | 61 | 4 | 1 | 118 | 1 | 117 | 2.93e-25 | 93.6 |
| Msa0449290 | MtrunA17_Chr1g0153591 | 44.355 | 124 | 52 | 6 | 1 | 124 | 1 | 107 | 1.08e-22 | 86.7 |
| Msa0449290 | MtrunA17_Chr3g0092701 | 66.129 | 62 | 21 | 0 | 1 | 62 | 1 | 62 | 2.97e-22 | 84.3 |
| Msa0449290 | MtrunA17_Chr4g0012121 | 41.139 | 158 | 76 | 5 | 1 | 154 | 1 | 145 | 3.28e-22 | 86.3 |
| Msa0449290 | MtrunA17_Chr3g0111221 | 46.512 | 86 | 45 | 1 | 49 | 134 | 23 | 107 | 2.64e-21 | 83.2 |
| Msa0449290 | MtrunA17_Chr3g0111311 | 58.209 | 67 | 23 | 3 | 53 | 119 | 29 | 90 | 2.38e-20 | 80.1 |
| Msa0449290 | MtrunA17_Chr7g0225821 | 41.270 | 126 | 66 | 6 | 1 | 124 | 1 | 120 | 7.66e-20 | 79.7 |
| Msa0449290 | MtrunA17_Chr8g0359071 | 34.899 | 149 | 67 | 6 | 3 | 144 | 4 | 129 | 2.83e-19 | 78.6 |
| Msa0449290 | MtrunA17_Chr3g0111711 | 40.496 | 121 | 56 | 4 | 1 | 117 | 1 | 109 | 2.23e-18 | 75.5 |
| Msa0449290 | MtrunA17_Chr3g0092851 | 58.730 | 63 | 24 | 2 | 1 | 61 | 1 | 63 | 5.31e-17 | 70.9 |
| Msa0449290 | MtrunA17_Chr3g0092841 | 59.091 | 66 | 26 | 1 | 1 | 65 | 1 | 66 | 9.08e-17 | 70.5 |
| Msa0449290 | MtrunA17_Chr3g0092801 | 59.091 | 66 | 26 | 1 | 1 | 65 | 1 | 66 | 9.08e-17 | 70.5 |
| Msa0449290 | MtrunA17_Chr3g0092881 | 57.576 | 66 | 27 | 1 | 1 | 65 | 1 | 66 | 9.69e-17 | 70.1 |
| Msa0449290 | MtrunA17_Chr3g0092704 | 80.488 | 41 | 8 | 0 | 1 | 41 | 1 | 41 | 8.14e-16 | 68.2 |
| Msa0449290 | MtrunA17_Chr6g0483481 | 39.316 | 117 | 57 | 4 | 23 | 132 | 5 | 114 | 9.59e-15 | 66.6 |
| Msa0449290 | MtrunA17_Chr3g0092901 | 57.895 | 57 | 23 | 1 | 1 | 57 | 1 | 56 | 1.39e-14 | 64.7 |
| Msa0449290 | MtrunA17_Chr3g0092771 | 93.750 | 32 | 2 | 0 | 1 | 32 | 1 | 32 | 2.32e-14 | 63.5 |
| Msa0449290 | MtrunA17_Chr3g0111201 | 47.619 | 63 | 22 | 1 | 88 | 150 | 3 | 54 | 7.28e-14 | 62.4 |
| Msa0449290 | MtrunA17_Chr3g0090581 | 57.143 | 49 | 21 | 0 | 21 | 69 | 22 | 70 | 1.34e-12 | 59.7 |
| Msa0449290 | MtrunA17_Chr3g0092941 | 81.081 | 37 | 6 | 1 | 1 | 36 | 1 | 37 | 1.66e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATGTTCAGAACTAAT+TGG | 0.232965 | 3_3:+32000464 | None:intergenic |
| CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3_3:-32000356 | Msa0449290:CDS |
| AGCAGGGAGCTGTCCGTCTC+AGG | 0.357261 | 3_3:-32000582 | Msa0449290:CDS |
| TTATGTTAAGCTTGCTACTT+TGG | 0.363249 | 3_3:-32000864 | Msa0449290:CDS |
| AGATTGTAGTTGTATCCCTT+GGG | 0.363389 | 3_3:-32000513 | Msa0449290:CDS |
| CTGCTTCAACGTTCTTCGTC+TGG | 0.376847 | 3_3:+32000600 | None:intergenic |
| TTGAAGAAATTGTTTACTAC+AGG | 0.382004 | 3_3:+32000278 | None:intergenic |
| GAGATTGTAGTTGTATCCCT+TGG | 0.382260 | 3_3:-32000514 | Msa0449290:CDS |
| AGCTTAACATAAGTCATTGT+TGG | 0.383649 | 3_3:+32000875 | None:intergenic |
| AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3_3:-32000231 | Msa0449290:CDS |
| GCAGAACGTTACTTCAAGAT+TGG | 0.399752 | 3_3:-32000308 | Msa0449290:CDS |
| AAAACAACCTTGGATTTCTT+CGG | 0.405097 | 3_3:-32000129 | Msa0449290:three_prime_UTR |
| CCATATTCAATATCAGCATT+AGG | 0.437256 | 3_3:+32000356 | None:intergenic |
| CAAGTCAAATATTGAACAAA+AGG | 0.441013 | 3_3:+32000556 | None:intergenic |
| TACTTTAAATAAAACAACCT+TGG | 0.442398 | 3_3:-32000139 | Msa0449290:three_prime_UTR |
| TGAGAAATATCATTCTTAAG+TGG | 0.452118 | 3_3:+32000202 | None:intergenic |
| TCTTCGGTATGTATTATGCA+TGG | 0.463568 | 3_3:-32000113 | Msa0449290:three_prime_UTR |
| GAAATTGTTTACTACAGGGT+TGG | 0.463585 | 3_3:+32000283 | None:intergenic |
| CTTCGGTATGTATTATGCAT+GGG | 0.481487 | 3_3:-32000112 | Msa0449290:three_prime_UTR |
| CAGACGAAGAACGTTGAAGC+AGG | 0.486278 | 3_3:-32000599 | Msa0449290:CDS |
| GAGTGCATCAAGAAGGGAAG+TGG | 0.522512 | 3_3:-32000398 | Msa0449290:CDS |
| TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3_3:-32000405 | Msa0449290:CDS |
| GATTGTAGTTGTATCCCTTG+GGG | 0.572574 | 3_3:-32000512 | Msa0449290:CDS |
| GCAGGGAGCTGTCCGTCTCA+GGG | 0.576016 | 3_3:-32000581 | Msa0449290:CDS |
| ACTTCCCTTCTTGATGCACT+CGG | 0.605609 | 3_3:+32000400 | None:intergenic |
| ACAAATATACATACAGAATG+TGG | 0.609862 | 3_3:+32000826 | None:intergenic |
| TGAAGAAATTGTTTACTACA+GGG | 0.620608 | 3_3:+32000279 | None:intergenic |
| ATATTTGACTTGACACCATG+CGG | 0.621402 | 3_3:-32000545 | Msa0449290:CDS |
| CGTTCTGCTTCATCTACAGA+GGG | 0.621559 | 3_3:+32000323 | None:intergenic |
| CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3_3:-32000404 | Msa0449290:CDS |
| GAACAAAAGGAACCCTGAGA+CGG | 0.632996 | 3_3:+32000569 | None:intergenic |
| AGACGAAGAACGTTGAAGCA+GGG | 0.637674 | 3_3:-32000598 | Msa0449290:CDS |
| ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3_3:-32000352 | Msa0449290:CDS |
| AGTGCATCAAGAAGGGAAGT+GGG | 0.648471 | 3_3:-32000397 | Msa0449290:CDS |
| CAATCTCTGAGATTGCCGCA+TGG | 0.655920 | 3_3:+32000530 | None:intergenic |
| ACGTTCTGCTTCATCTACAG+AGG | 0.657683 | 3_3:+32000322 | None:intergenic |
| ATACATACCGAAGAAATCCA+AGG | 0.663976 | 3_3:+32000122 | None:intergenic |
| ATTGTAGTTGTATCCCTTGG+GGG | 0.670258 | 3_3:-32000511 | Msa0449290:CDS |
| ACATAATATGAAGATGATCG+AGG | 0.692790 | 3_3:-32000450 | Msa0449290:CDS |
| TAGATGCATGATAACATGCA+TGG | 0.728301 | 3_3:+32000163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTATATTTGTTTAACAT+TGG | - | chr3_3:32000202-32000221 | Msa0449290:exon | 15.0% |
| !! | ATGTATATTTGTTTAACATT+GGG | - | chr3_3:32000203-32000222 | Msa0449290:exon | 15.0% |
| !! | TATGTATATTTGTTTAACAT+TGG | - | chr3_3:32000202-32000221 | Msa0449290:exon | 15.0% |
| !! | ATGTATATTTGTTTAACATT+GGG | - | chr3_3:32000203-32000222 | Msa0449290:exon | 15.0% |
| !! | TCGATATATATTTATGTGTT+AGG | - | chr3_3:32000239-32000258 | Msa0449290:CDS | 20.0% |
| !! | TGTATATATTTACGAAAGTT+TGG | + | chr3_3:32000341-32000360 | None:intergenic | 20.0% |
| !! | ATATTATGTTCAGAACTAAT+TGG | + | chr3_3:32000557-32000576 | None:intergenic | 20.0% |
| !! | TACTTTAAATAAAACAACCT+TGG | - | chr3_3:32000879-32000898 | Msa0449290:exon | 20.0% |
| !! | TCGATATATATTTATGTGTT+AGG | - | chr3_3:32000239-32000258 | Msa0449290:CDS | 20.0% |
| !! | TGTATATATTTACGAAAGTT+TGG | + | chr3_3:32000341-32000360 | None:intergenic | 20.0% |
| !! | ATATTATGTTCAGAACTAAT+TGG | + | chr3_3:32000557-32000576 | None:intergenic | 20.0% |
| !! | TACTTTAAATAAAACAACCT+TGG | - | chr3_3:32000879-32000898 | Msa0449290:exon | 20.0% |
| ! | ACAAATATACATACAGAATG+TGG | + | chr3_3:32000195-32000214 | None:intergenic | 25.0% |
| ! | CACATAAATATATATCGATG+AGG | + | chr3_3:32000237-32000256 | None:intergenic | 25.0% |
| ! | CAAGTCAAATATTGAACAAA+AGG | + | chr3_3:32000465-32000484 | None:intergenic | 25.0% |
| ! | TGAAGAAATTGTTTACTACA+GGG | + | chr3_3:32000742-32000761 | None:intergenic | 25.0% |
| ! | TTGAAGAAATTGTTTACTAC+AGG | + | chr3_3:32000743-32000762 | None:intergenic | 25.0% |
| ! | TGAGAAATATCATTCTTAAG+TGG | + | chr3_3:32000819-32000838 | None:intergenic | 25.0% |
| ! | ACAAATATACATACAGAATG+TGG | + | chr3_3:32000195-32000214 | None:intergenic | 25.0% |
| ! | CACATAAATATATATCGATG+AGG | + | chr3_3:32000237-32000256 | None:intergenic | 25.0% |
| ! | CAAGTCAAATATTGAACAAA+AGG | + | chr3_3:32000465-32000484 | None:intergenic | 25.0% |
| ! | TGAAGAAATTGTTTACTACA+GGG | + | chr3_3:32000742-32000761 | None:intergenic | 25.0% |
| ! | TTGAAGAAATTGTTTACTAC+AGG | + | chr3_3:32000743-32000762 | None:intergenic | 25.0% |
| ! | TGAGAAATATCATTCTTAAG+TGG | + | chr3_3:32000819-32000838 | None:intergenic | 25.0% |
| AGCTTAACATAAGTCATTGT+TGG | + | chr3_3:32000146-32000165 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32000154-32000173 | Msa0449290:three_prime_UTR | 30.0% |
| TACATTATTCACACGTGTAT+CGG | - | chr3_3:32000357-32000376 | Msa0449290:CDS | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | - | chr3_3:32000568-32000587 | Msa0449290:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | + | chr3_3:32000665-32000684 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | - | chr3_3:32000662-32000681 | Msa0449290:intron | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | - | chr3_3:32000666-32000685 | Msa0449290:intron | 30.0% | |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32000771-32000790 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32000781-32000800 | Msa0449290:intron | 30.0% | |
| AAAACAACCTTGGATTTCTT+CGG | - | chr3_3:32000889-32000908 | Msa0449290:exon | 30.0% | |
| AGCTTAACATAAGTCATTGT+TGG | + | chr3_3:32000146-32000165 | None:intergenic | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32000154-32000173 | Msa0449290:three_prime_UTR | 30.0% |
| TACATTATTCACACGTGTAT+CGG | - | chr3_3:32000357-32000376 | Msa0449290:CDS | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | - | chr3_3:32000568-32000587 | Msa0449290:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | + | chr3_3:32000665-32000684 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | - | chr3_3:32000662-32000681 | Msa0449290:intron | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | - | chr3_3:32000666-32000685 | Msa0449290:intron | 30.0% | |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32000771-32000790 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32000781-32000800 | Msa0449290:intron | 30.0% | |
| AAAACAACCTTGGATTTCTT+CGG | - | chr3_3:32000889-32000908 | Msa0449290:exon | 30.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | + | chr3_3:32000385-32000404 | None:intergenic | 35.0% | |
| !! | ATATTTGACTTGACACCATG+CGG | - | chr3_3:32000473-32000492 | Msa0449290:CDS | 35.0% |
| AGATTGTAGTTGTATCCCTT+GGG | - | chr3_3:32000505-32000524 | Msa0449290:CDS | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32000599-32000618 | None:intergenic | 35.0% |
| GAAATTGTTTACTACAGGGT+TGG | + | chr3_3:32000738-32000757 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | + | chr3_3:32000858-32000877 | None:intergenic | 35.0% | |
| ATACATACCGAAGAAATCCA+AGG | + | chr3_3:32000899-32000918 | None:intergenic | 35.0% | |
| TCTTCGGTATGTATTATGCA+TGG | - | chr3_3:32000905-32000924 | Msa0449290:five_prime_UTR | 35.0% | |
| CTTCGGTATGTATTATGCAT+GGG | - | chr3_3:32000906-32000925 | Msa0449290:five_prime_UTR | 35.0% | |
| ATGGCAAAGGCAGTTAAAAT+TGG | + | chr3_3:32000385-32000404 | None:intergenic | 35.0% | |
| !! | ATATTTGACTTGACACCATG+CGG | - | chr3_3:32000473-32000492 | Msa0449290:CDS | 35.0% |
| AGATTGTAGTTGTATCCCTT+GGG | - | chr3_3:32000505-32000524 | Msa0449290:CDS | 35.0% | |
| ! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32000599-32000618 | None:intergenic | 35.0% |
| GAAATTGTTTACTACAGGGT+TGG | + | chr3_3:32000738-32000757 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | + | chr3_3:32000858-32000877 | None:intergenic | 35.0% | |
| ATACATACCGAAGAAATCCA+AGG | + | chr3_3:32000899-32000918 | None:intergenic | 35.0% | |
| TCTTCGGTATGTATTATGCA+TGG | - | chr3_3:32000905-32000924 | Msa0449290:five_prime_UTR | 35.0% | |
| CTTCGGTATGTATTATGCAT+GGG | - | chr3_3:32000906-32000925 | Msa0449290:five_prime_UTR | 35.0% | |
| ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32000398-32000417 | None:intergenic | 40.0% | |
| GAGATTGTAGTTGTATCCCT+TGG | - | chr3_3:32000504-32000523 | Msa0449290:CDS | 40.0% | |
| GATTGTAGTTGTATCCCTTG+GGG | - | chr3_3:32000506-32000525 | Msa0449290:CDS | 40.0% | |
| ATTGTAGTTGTATCCCTTGG+GGG | - | chr3_3:32000507-32000526 | Msa0449290:CDS | 40.0% | |
| TACCAAAAAATAGCCCCCAA+GGG | + | chr3_3:32000523-32000542 | None:intergenic | 40.0% | |
| GCAGAACGTTACTTCAAGAT+TGG | - | chr3_3:32000710-32000729 | Msa0449290:intron | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32000787-32000806 | Msa0449290:intron | 40.0% | |
| ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32000398-32000417 | None:intergenic | 40.0% | |
| GAGATTGTAGTTGTATCCCT+TGG | - | chr3_3:32000504-32000523 | Msa0449290:CDS | 40.0% | |
| GATTGTAGTTGTATCCCTTG+GGG | - | chr3_3:32000506-32000525 | Msa0449290:CDS | 40.0% | |
| ATTGTAGTTGTATCCCTTGG+GGG | - | chr3_3:32000507-32000526 | Msa0449290:CDS | 40.0% | |
| TACCAAAAAATAGCCCCCAA+GGG | + | chr3_3:32000523-32000542 | None:intergenic | 40.0% | |
| GCAGAACGTTACTTCAAGAT+TGG | - | chr3_3:32000710-32000729 | Msa0449290:intron | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32000787-32000806 | Msa0449290:intron | 40.0% | |
| GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32000404-32000423 | None:intergenic | 45.0% | |
| AGACGAAGAACGTTGAAGCA+GGG | - | chr3_3:32000420-32000439 | Msa0449290:CDS | 45.0% | |
| GAACAAAAGGAACCCTGAGA+CGG | + | chr3_3:32000452-32000471 | None:intergenic | 45.0% | |
| !!! | ATCCCTTGGGGGCTATTTTT+TGG | - | chr3_3:32000518-32000537 | Msa0449290:CDS | 45.0% |
| GTACCAAAAAATAGCCCCCA+AGG | + | chr3_3:32000524-32000543 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32000621-32000640 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | - | chr3_3:32000621-32000640 | Msa0449290:intron | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | + | chr3_3:32000698-32000717 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | + | chr3_3:32000699-32000718 | None:intergenic | 45.0% | |
| GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32000404-32000423 | None:intergenic | 45.0% | |
| AGACGAAGAACGTTGAAGCA+GGG | - | chr3_3:32000420-32000439 | Msa0449290:CDS | 45.0% | |
| GAACAAAAGGAACCCTGAGA+CGG | + | chr3_3:32000452-32000471 | None:intergenic | 45.0% | |
| !!! | ATCCCTTGGGGGCTATTTTT+TGG | - | chr3_3:32000518-32000537 | Msa0449290:CDS | 45.0% |
| GTACCAAAAAATAGCCCCCA+AGG | + | chr3_3:32000524-32000543 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32000621-32000640 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | - | chr3_3:32000621-32000640 | Msa0449290:intron | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | + | chr3_3:32000698-32000717 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | + | chr3_3:32000699-32000718 | None:intergenic | 45.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32000421-32000440 | None:intergenic | 50.0% | |
| CAGACGAAGAACGTTGAAGC+AGG | - | chr3_3:32000419-32000438 | Msa0449290:CDS | 50.0% | |
| !! | CAATCTCTGAGATTGCCGCA+TGG | + | chr3_3:32000491-32000510 | None:intergenic | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32000613-32000632 | Msa0449290:intron | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32000614-32000633 | Msa0449290:intron | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | - | chr3_3:32000620-32000639 | Msa0449290:intron | 50.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32000421-32000440 | None:intergenic | 50.0% | |
| CAGACGAAGAACGTTGAAGC+AGG | - | chr3_3:32000419-32000438 | Msa0449290:CDS | 50.0% | |
| !! | CAATCTCTGAGATTGCCGCA+TGG | + | chr3_3:32000491-32000510 | None:intergenic | 50.0% |
| TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32000613-32000632 | Msa0449290:intron | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32000614-32000633 | Msa0449290:intron | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | - | chr3_3:32000620-32000639 | Msa0449290:intron | 50.0% | |
| AGCAGGGAGCTGTCCGTCTC+AGG | - | chr3_3:32000436-32000455 | Msa0449290:CDS | 65.0% | |
| GCAGGGAGCTGTCCGTCTCA+GGG | - | chr3_3:32000437-32000456 | Msa0449290:CDS | 65.0% | |
| AGCAGGGAGCTGTCCGTCTC+AGG | - | chr3_3:32000436-32000455 | Msa0449290:CDS | 65.0% | |
| GCAGGGAGCTGTCCGTCTCA+GGG | - | chr3_3:32000437-32000456 | Msa0449290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 32000101 | 32000939 | 32000101 | ID=Msa0449290;Name=Msa0449290 |
| chr3_3 | mRNA | 32000101 | 32000939 | 32000101 | ID=Msa0449290-mRNA-1;Parent=Msa0449290;Name=Msa0449290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=48|1|1|1|1|1|2|116|154 |
| chr3_3 | exon | 32000101 | 32000629 | 32000101 | ID=Msa0449290-mRNA-1:exon:5892;Parent=Msa0449290-mRNA-1 |
| chr3_3 | exon | 32000840 | 32000939 | 32000840 | ID=Msa0449290-mRNA-1:exon:5891;Parent=Msa0449290-mRNA-1 |
| chr3_3 | five_prime_UTR | 32000892 | 32000939 | 32000892 | ID=Msa0449290-mRNA-1:five_prime_utr;Parent=Msa0449290-mRNA-1 |
| chr3_3 | CDS | 32000840 | 32000891 | 32000840 | ID=Msa0449290-mRNA-1:cds;Parent=Msa0449290-mRNA-1 |
| chr3_3 | CDS | 32000217 | 32000629 | 32000217 | ID=Msa0449290-mRNA-1:cds;Parent=Msa0449290-mRNA-1 |
| chr3_3 | three_prime_UTR | 32000101 | 32000216 | 32000101 | ID=Msa0449290-mRNA-1:three_prime_utr;Parent=Msa0449290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
