AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602100 MtrunA17_Chr4g0029341 93.578 218 14 0 5 222 1 218 2.53e-153 424
Msa0602100 MtrunA17_Chr1g0196661 68.837 215 67 0 8 222 3 217 1.39e-112 321
Msa0602100 MtrunA17_Chr1g0196721 67.757 214 69 0 9 222 3 216 1.60e-107 308
Msa0602100 MtrunA17_Chr1g0196691 64.126 223 78 2 1 222 22 243 7.02e-105 302
Msa0602100 MtrunA17_Chr1g0196711 66.047 215 73 0 8 222 3 217 3.91e-103 297
Msa0602100 MtrunA17_Chr1g0212301 48.837 215 106 3 5 217 1 213 2.31e-66 204
Msa0602100 MtrunA17_Chr1g0196771 47.867 211 109 1 7 217 2 211 3.40e-66 204
Msa0602100 MtrunA17_Chr4g0008791 44.954 218 116 2 2 218 1 215 5.58e-63 195
Msa0602100 MtrunA17_Chr4g0008781 46.083 217 113 3 7 222 7 220 4.14e-61 190
Msa0602100 MtrunA17_Chr7g0240641 46.948 213 109 2 7 218 6 215 3.86e-60 188
Msa0602100 MtrunA17_Chr7g0240691 44.393 214 114 2 7 218 36 246 9.95e-59 186
Msa0602100 MtrunA17_Chr7g0240631 45.070 213 113 2 7 218 6 215 1.01e-58 184
Msa0602100 MtrunA17_Chr7g0240511 45.370 216 109 3 7 221 6 213 1.92e-58 184
Msa0602100 MtrunA17_Chr5g0417011 44.545 220 116 4 6 220 5 223 1.68e-57 181
Msa0602100 MtrunA17_Chr7g0240681 44.393 214 114 2 7 218 6 216 2.00e-57 181
Msa0602100 MtrunA17_Chr3g0132581 45.070 213 113 3 7 218 4 213 2.26e-57 181
Msa0602100 MtrunA17_Chr7g0240561 42.523 214 117 3 7 218 6 215 3.81e-56 178
Msa0602100 MtrunA17_Chr8g0379581 44.651 215 113 2 6 218 3 213 9.37e-55 174
Msa0602100 MtrunA17_Chr2g0312771 44.091 220 116 4 5 222 1 215 4.29e-53 170
Msa0602100 MtrunA17_Chr2g0312721 42.723 213 117 3 5 216 1 209 5.50e-53 170
Msa0602100 MtrunA17_Chr8g0379561 46.637 223 108 6 5 222 2 218 3.17e-52 168
Msa0602100 MtrunA17_Chr2g0312751 44.393 214 112 4 5 216 1 209 3.59e-52 167
Msa0602100 MtrunA17_Chr7g0240581 39.906 213 124 2 7 218 6 215 4.31e-52 167
Msa0602100 MtrunA17_Chr7g0240541 42.056 214 118 4 7 218 6 215 5.59e-52 167
Msa0602100 MtrunA17_Chr6g0483141 43.939 198 105 3 22 217 17 210 2.29e-51 166
Msa0602100 MtrunA17_Chr8g0363751 43.578 218 115 6 9 219 6 222 8.07e-51 164
Msa0602100 MtrunA17_Chr7g0240611 40.376 213 119 3 7 218 6 211 1.59e-50 163
Msa0602100 MtrunA17_Chr7g0240551 40.376 213 123 2 7 218 6 215 1.93e-50 163
Msa0602100 MtrunA17_Chr7g0240671 41.395 215 116 4 5 217 1 207 3.76e-50 162
Msa0602100 MtrunA17_Chr2g0312791 42.793 222 118 6 5 222 1 217 1.67e-49 161
Msa0602100 MtrunA17_Chr7g0240531 40.845 213 122 2 7 218 6 215 1.74e-49 161
Msa0602100 MtrunA17_Chr7g0240661 41.475 217 119 3 2 217 1 210 2.59e-49 160
Msa0602100 MtrunA17_Chr2g0312731 40.670 209 119 3 5 212 1 205 3.34e-48 157
Msa0602100 MtrunA17_Chr2g0312781 41.784 213 117 4 2 212 15 222 5.20e-48 157
Msa0602100 MtrunA17_Chr7g0240521 43.256 215 115 5 7 218 13 223 1.61e-47 156
Msa0602100 MtrunA17_Chr2g0312811 40.741 216 119 5 5 216 1 211 1.00e-46 154
Msa0602100 MtrunA17_Chr7g0240651 39.906 213 120 3 7 218 6 211 6.04e-45 149
Msa0602100 MtrunA17_Chr8g0357241 39.906 213 123 3 5 216 1 209 1.54e-44 148
Msa0602100 MtrunA17_Chr3g0107731 39.819 221 128 3 3 222 4 220 2.71e-44 147
Msa0602100 MtrunA17_Chr8g0357211 39.437 213 124 3 5 216 1 209 1.68e-43 145
Msa0602100 MtrunA17_Chr3g0107741 39.631 217 126 3 7 222 8 220 8.94e-43 144
Msa0602100 MtrunA17_Chr2g0312681 38.426 216 128 3 5 219 1 212 1.81e-42 143
Msa0602100 MtrunA17_Chr5g0415411 37.778 225 131 4 7 222 4 228 2.94e-42 142
Msa0602100 MtrunA17_Chr4g0069471 45.506 178 93 3 5 180 22 197 4.39e-42 141
Msa0602100 MtrunA17_Chr2g0312691 40.376 213 122 3 5 216 1 209 4.52e-42 142
Msa0602100 MtrunA17_Chr2g0312711 41.232 211 114 5 5 212 1 204 1.40e-40 138
Msa0602100 MtrunA17_Chr5g0433801 35.814 215 133 3 3 216 1 211 8.89e-38 130
Msa0602100 MtrunA17_Chr8g0391631 43.478 161 82 7 3 156 17 175 9.07e-36 124
Msa0602100 MtrunA17_Chr2g0313561 60.714 56 21 1 52 106 2 57 1.62e-19 79.3
Msa0602100 MtrunA17_Chr5g0415421 44.595 74 38 1 32 102 11 84 3.96e-12 61.2
Msa0602100 MtrunA17_Chr4g0076681 28.436 211 133 6 11 210 18 221 4.80e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602100 AT3G09270.1 45.581 215 113 3 7 219 5 217 3.82e-59 186
Msa0602100 AT2G29450.1 43.578 218 119 3 7 222 5 220 1.87e-56 179
Msa0602100 AT2G29460.1 43.318 217 120 2 7 222 6 220 5.14e-56 178
Msa0602100 AT2G29490.1 43.981 216 118 2 7 221 6 219 1.15e-55 177
Msa0602100 AT2G29470.1 42.661 218 121 3 7 222 6 221 6.58e-55 175
Msa0602100 AT1G10370.1 43.694 222 120 3 6 222 3 224 7.14e-55 175
Msa0602100 AT2G29420.1 40.092 217 128 1 6 222 7 221 1.84e-54 174
Msa0602100 AT2G29480.1 43.243 222 123 2 2 222 1 220 2.06e-54 174
Msa0602100 AT1G17180.1 41.096 219 124 3 5 222 1 215 2.33e-49 161
Msa0602100 AT2G29440.1 40.092 217 127 2 7 222 5 219 8.22e-49 159
Msa0602100 AT1G78340.1 41.981 212 118 3 5 215 1 208 2.47e-48 158
Msa0602100 AT1G74590.1 39.726 219 129 2 7 222 6 224 3.25e-48 158
Msa0602100 AT1G10360.1 41.176 221 125 3 7 222 4 224 1.21e-47 157
Msa0602100 AT1G27130.1 40.092 217 124 4 7 217 5 221 1.03e-46 154
Msa0602100 AT1G78320.1 40.566 212 117 6 5 213 1 206 2.10e-46 153
Msa0602100 AT1G78370.1 39.623 212 123 3 5 215 1 208 7.68e-46 152
Msa0602100 AT5G62480.1 36.245 229 131 5 4 221 4 228 1.60e-45 152
Msa0602100 AT1G59670.1 39.631 217 125 4 7 217 5 221 8.09e-45 149
Msa0602100 AT1G69930.1 37.156 218 133 3 4 217 8 225 3.90e-44 148
Msa0602100 AT1G78380.1 39.726 219 127 3 5 222 1 215 8.96e-44 146
Msa0602100 AT1G27140.1 39.462 223 128 4 7 222 5 227 1.67e-43 146
Msa0602100 AT1G17170.1 39.906 213 122 4 5 216 1 208 2.98e-43 145
Msa0602100 AT1G59700.1 37.327 217 130 4 7 217 5 221 2.70e-42 143
Msa0602100 AT1G17190.1 35.945 217 134 3 7 222 4 216 1.95e-41 140
Msa0602100 AT1G78360.1 37.383 214 128 4 5 216 1 210 1.60e-38 133
Msa0602100 AT1G53680.1 38.119 202 118 4 14 212 13 210 2.83e-38 132
Msa0602100 AT3G43800.1 38.182 220 127 5 7 221 4 219 2.03e-37 130
Msa0602100 AT1G69920.1 35.349 215 133 4 9 217 35 249 2.11e-37 131
Msa0602100 AT5G62480.3 29.825 228 120 5 4 221 4 201 1.89e-29 109
Msa0602100 AT5G62480.2 29.825 228 121 5 4 221 4 202 2.45e-29 109
Msa0602100 AT1G78320.2 32.701 211 108 6 5 213 1 179 8.64e-28 104

Find 48 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCCCAAGCTCGGTTC+TGG 0.280479 4_2:+45329737 Msa0602100:CDS
AGGAGACACCGTTAACATTC+TGG 0.299490 4_2:+45330200 Msa0602100:CDS
AAGTGAAGCTACATGGATTT+TGG 0.302285 4_2:+45329479 Msa0602100:CDS
AATACTACCCTCAAAGTAAA+AGG 0.302524 4_2:-45329508 None:intergenic
ATATAAGCTACCCCTTTCTT+AGG 0.310777 4_2:-45330431 None:intergenic
TGTCATACAAAAGTAGTTAT+AGG 0.314540 4_2:+45330401 Msa0602100:exon
CCGAGCTTGGGCTCTCTCAT+AGG 0.329353 4_2:-45329731 None:intergenic
AGAATACCATAGCGAAAATC+TGG 0.331408 4_2:+45330121 Msa0602100:CDS
GTATTGACCCTTAAGCTAAA+AGG 0.363440 4_2:+45329526 Msa0602100:CDS
TTGAATACATTGATGAGATA+TGG 0.380718 4_2:+45329680 Msa0602100:CDS
TATGTTACCAACCTAGGGTT+GGG 0.382533 4_2:+45330505 Msa0602100:three_prime_UTR
GTCATACAAAAGTAGTTATA+GGG 0.403210 4_2:+45330402 Msa0602100:exon
TCTTCTTCTATGTTCTCATA+TGG 0.416671 4_2:-45329553 None:intergenic
AACATTCTGGACATAGCTCT+TGG 0.422694 4_2:+45330213 Msa0602100:CDS
CTTCTTTATGTTACCAACCT+AGG 0.434614 4_2:+45330499 Msa0602100:three_prime_UTR
AGCTATGTCCAGAATGTTAA+CGG 0.440075 4_2:-45330208 None:intergenic
GCTATCAGTTTCTCATGATC+AGG 0.440168 4_2:-45330366 None:intergenic
GCTCTCTCATAGGGATCAAC+AGG 0.444906 4_2:-45329721 None:intergenic
AATTCCCTCACTTGCATGCA+TGG 0.474769 4_2:+45330301 Msa0602100:CDS
TTCAAGAATGTACCTGTCAT+AGG 0.475029 4_2:+45330333 Msa0602100:CDS
TAGGGCATCTTCCTAAGAAA+GGG 0.476111 4_2:+45330420 Msa0602100:three_prime_UTR
ATAGGGCATCTTCCTAAGAA+AGG 0.483378 4_2:+45330419 Msa0602100:three_prime_UTR
GAGAGCCCAAGCTCGGTTCT+GGG 0.483641 4_2:+45329738 Msa0602100:CDS
TTCTTTATGTTACCAACCTA+GGG 0.487900 4_2:+45330500 Msa0602100:three_prime_UTR
ATAAGACAAATTAATTAAGA+TGG 0.490303 4_2:+45329450 None:intergenic
TTATGTTACCAACCTAGGGT+TGG 0.492593 4_2:+45330504 Msa0602100:three_prime_UTR
AAAGTAATAAAATGCTAAGA+TGG 0.497390 4_2:+45330547 Msa0602100:three_prime_UTR
CGAGCTTGGGCTCTCTCATA+GGG 0.521012 4_2:-45329730 None:intergenic
TCAAACCATGCATGCAAGTG+AGG 0.535813 4_2:-45330306 None:intergenic
ACTCCAGTGTTAGTTCATGA+TGG 0.542419 4_2:+45329628 Msa0602100:CDS
GCAGATCAAGTGAAGCTACA+TGG 0.559561 4_2:+45329472 Msa0602100:CDS
TTTCCATCATGAACTAACAC+TGG 0.567459 4_2:-45329631 None:intergenic
GAGGGAATTTCTCAGCTGCT+AGG 0.567585 4_2:-45330287 None:intergenic
CAAACCATGCATGCAAGTGA+GGG 0.568010 4_2:-45330305 None:intergenic
TAGGGATCAACAGGAAGCAA+AGG 0.573576 4_2:-45329712 None:intergenic
AGGGATCAACAGGAAGCAAA+GGG 0.576510 4_2:-45329711 None:intergenic
CTAACGAGTGCACCAACTGC+AGG 0.579048 4_2:-45330075 None:intergenic
ACAGGAAGCAAAGGGTATTG+TGG 0.581649 4_2:-45329703 None:intergenic
GAATACCATAGCGAAAATCT+GGG 0.582158 4_2:+45330122 Msa0602100:CDS
GGATTGTATTGAAGAAGTTG+AGG 0.589460 4_2:-45329592 None:intergenic
GGTGCACTCGTTAGTAGCGG+TGG 0.611355 4_2:+45330084 Msa0602100:CDS
AGACAAACCCAACCCTAGGT+TGG 0.615575 4_2:-45330512 None:intergenic
CCTATGAGAGAGCCCAAGCT+CGG 0.617875 4_2:+45329731 Msa0602100:CDS
AGCTAGACAAACCCAACCCT+AGG 0.627118 4_2:-45330516 None:intergenic
ATGATCATAGACTCACATAG+AGG 0.640551 4_2:-45329655 None:intergenic
GTAGCGGTGGCGATGAAGAG+CGG 0.649339 4_2:+45330097 Msa0602100:CDS
AGGGCATCTTCCTAAGAAAG+GGG 0.661151 4_2:+45330421 Msa0602100:three_prime_UTR
GTTGGTGCACTCGTTAGTAG+CGG 0.664719 4_2:+45330081 Msa0602100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAACATATTATTT+AGG + chr4_2:45329891-45329910 Msa0602100:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_2:45330011-45330030 None:intergenic 10.0%
!! ATTTAATCAACATATTATTT+AGG + chr4_2:45329891-45329910 Msa0602100:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_2:45330011-45330030 None:intergenic 10.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_2:45329828-45329847 None:intergenic 15.0%
!! AAAAAAAATATTGTTGGATA+TGG - chr4_2:45329968-45329987 None:intergenic 15.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_2:45329828-45329847 None:intergenic 15.0%
!! AAAAAAAATATTGTTGGATA+TGG - chr4_2:45329968-45329987 None:intergenic 15.0%
!! AAAGTAATAAAATGCTAAGA+TGG + chr4_2:45330547-45330566 Msa0602100:three_prime_UTR 20.0%
! TTGAATACATTGATGAGATA+TGG + chr4_2:45329680-45329699 Msa0602100:CDS 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_2:45329930-45329949 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_2:45330401-45330420 Msa0602100:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_2:45330402-45330421 Msa0602100:exon 25.0%
! TTGAATACATTGATGAGATA+TGG + chr4_2:45329680-45329699 Msa0602100:CDS 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_2:45329930-45329949 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_2:45330401-45330420 Msa0602100:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_2:45330402-45330421 Msa0602100:exon 25.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_2:45329511-45329530 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_2:45329536-45329555 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_2:45329537-45329556 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_2:45329556-45329575 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_2:45329814-45329833 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_2:45330063-45330082 Msa0602100:intron 30.0%
! GACTACAAGAAGAAACTTTT+TGG + chr4_2:45330177-45330196 Msa0602100:CDS 30.0%
! TACAAGAAGAAACTTTTTGG+AGG + chr4_2:45330180-45330199 Msa0602100:CDS 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_2:45330377-45330396 Msa0602100:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_2:45330500-45330519 Msa0602100:three_prime_UTR 30.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_2:45329511-45329530 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_2:45329536-45329555 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_2:45329537-45329556 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_2:45329556-45329575 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_2:45329814-45329833 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_2:45330063-45330082 Msa0602100:intron 30.0%
! GACTACAAGAAGAAACTTTT+TGG + chr4_2:45330177-45330196 Msa0602100:CDS 30.0%
! TACAAGAAGAAACTTTTTGG+AGG + chr4_2:45330180-45330199 Msa0602100:CDS 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_2:45330377-45330396 Msa0602100:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_2:45330500-45330519 Msa0602100:three_prime_UTR 30.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_2:45329479-45329498 Msa0602100:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_2:45329501-45329520 Msa0602100:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_2:45329526-45329545 Msa0602100:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_2:45329595-45329614 None:intergenic 35.0%
TTTCCATCATGAACTAACAC+TGG - chr4_2:45329634-45329653 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_2:45329658-45329677 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_2:45329953-45329972 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_2:45330121-45330140 Msa0602100:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_2:45330122-45330141 Msa0602100:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_2:45330211-45330230 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_2:45330333-45330352 Msa0602100:CDS 35.0%
ATATAAGCTACCCCTTTCTT+AGG - chr4_2:45330434-45330453 None:intergenic 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_2:45330499-45330518 Msa0602100:three_prime_UTR 35.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_2:45329479-45329498 Msa0602100:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_2:45329501-45329520 Msa0602100:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_2:45329526-45329545 Msa0602100:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_2:45329595-45329614 None:intergenic 35.0%
TTTCCATCATGAACTAACAC+TGG - chr4_2:45329634-45329653 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_2:45329658-45329677 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_2:45329953-45329972 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_2:45330121-45330140 Msa0602100:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_2:45330122-45330141 Msa0602100:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_2:45330211-45330230 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_2:45330333-45330352 Msa0602100:CDS 35.0%
ATATAAGCTACCCCTTTCTT+AGG - chr4_2:45330434-45330453 None:intergenic 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_2:45330499-45330518 Msa0602100:three_prime_UTR 35.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_2:45329500-45329519 Msa0602100:CDS 40.0%
ACTCCAGTGTTAGTTCATGA+TGG + chr4_2:45329628-45329647 Msa0602100:CDS 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_2:45330130-45330149 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_2:45330213-45330232 Msa0602100:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_2:45330348-45330367 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_2:45330369-45330388 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_2:45330419-45330438 Msa0602100:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_2:45330420-45330439 Msa0602100:three_prime_UTR 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_2:45330504-45330523 Msa0602100:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_2:45330505-45330524 Msa0602100:three_prime_UTR 40.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_2:45329500-45329519 Msa0602100:CDS 40.0%
ACTCCAGTGTTAGTTCATGA+TGG + chr4_2:45329628-45329647 Msa0602100:CDS 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_2:45330130-45330149 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_2:45330213-45330232 Msa0602100:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_2:45330348-45330367 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_2:45330369-45330388 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_2:45330419-45330438 Msa0602100:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_2:45330420-45330439 Msa0602100:three_prime_UTR 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_2:45330504-45330523 Msa0602100:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_2:45330505-45330524 Msa0602100:three_prime_UTR 40.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_2:45329472-45329491 Msa0602100:CDS 45.0%
! ACTGGAGTTTTCTTGTGCAC+TGG - chr4_2:45329616-45329635 None:intergenic 45.0%
!! ACAGGAAGCAAAGGGTATTG+TGG - chr4_2:45329706-45329725 None:intergenic 45.0%
AGGGATCAACAGGAAGCAAA+GGG - chr4_2:45329714-45329733 None:intergenic 45.0%
TAGGGATCAACAGGAAGCAA+AGG - chr4_2:45329715-45329734 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_2:45329746-45329765 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_2:45329747-45329766 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_2:45330200-45330219 Msa0602100:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_2:45330301-45330320 Msa0602100:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_2:45330308-45330327 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_2:45330309-45330328 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_2:45330421-45330440 Msa0602100:three_prime_UTR 45.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_2:45329472-45329491 Msa0602100:CDS 45.0%
! ACTGGAGTTTTCTTGTGCAC+TGG - chr4_2:45329616-45329635 None:intergenic 45.0%
!! ACAGGAAGCAAAGGGTATTG+TGG - chr4_2:45329706-45329725 None:intergenic 45.0%
AGGGATCAACAGGAAGCAAA+GGG - chr4_2:45329714-45329733 None:intergenic 45.0%
TAGGGATCAACAGGAAGCAA+AGG - chr4_2:45329715-45329734 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_2:45329746-45329765 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_2:45329747-45329766 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_2:45330200-45330219 Msa0602100:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_2:45330301-45330320 Msa0602100:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_2:45330308-45330327 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_2:45330309-45330328 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_2:45330421-45330440 Msa0602100:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAATATTGT+TGG - chr4_2:45329974-45329993 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_2:45330035-45330054 Msa0602100:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_2:45330036-45330055 Msa0602100:intron 5.0%
!! AAAAAAAAAAAAAATATTGT+TGG - chr4_2:45329974-45329993 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_2:45330035-45330054 Msa0602100:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_2:45330036-45330055 Msa0602100:intron 5.0%
GCTCTCTCATAGGGATCAAC+AGG - chr4_2:45329724-45329743 None:intergenic 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_2:45330081-45330100 Msa0602100:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_2:45330290-45330309 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_2:45330515-45330534 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_2:45330519-45330538 None:intergenic 50.0%
GCTCTCTCATAGGGATCAAC+AGG - chr4_2:45329724-45329743 None:intergenic 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_2:45330081-45330100 Msa0602100:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_2:45330290-45330309 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_2:45330515-45330534 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_2:45330519-45330538 None:intergenic 50.0%
CGAGCTTGGGCTCTCTCATA+GGG - chr4_2:45329733-45329752 None:intergenic 55.0%
CCTATGAGAGAGCCCAAGCT+CGG + chr4_2:45329731-45329750 Msa0602100:CDS 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_2:45330078-45330097 None:intergenic 55.0%
CGAGCTTGGGCTCTCTCATA+GGG - chr4_2:45329733-45329752 None:intergenic 55.0%
CCTATGAGAGAGCCCAAGCT+CGG + chr4_2:45329731-45329750 Msa0602100:CDS 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_2:45330078-45330097 None:intergenic 55.0%
CCGAGCTTGGGCTCTCTCAT+AGG - chr4_2:45329734-45329753 None:intergenic 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_2:45329737-45329756 Msa0602100:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_2:45329738-45329757 Msa0602100:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_2:45330084-45330103 Msa0602100:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_2:45330097-45330116 Msa0602100:CDS 60.0%
CCGAGCTTGGGCTCTCTCAT+AGG - chr4_2:45329734-45329753 None:intergenic 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_2:45329737-45329756 Msa0602100:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_2:45329738-45329757 Msa0602100:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_2:45330084-45330103 Msa0602100:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_2:45330097-45330116 Msa0602100:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 45329457 45330569 45329457 ID=Msa0602100;Name=Msa0602100
chr4_2 mRNA 45329457 45330569 45329457 ID=Msa0602100-mRNA-1;Parent=Msa0602100;Name=Msa0602100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.5|1|1|1|2|153|222
chr4_2 exon 45329457 45329780 45329457 ID=Msa0602100-mRNA-1:exon:10155;Parent=Msa0602100-mRNA-1
chr4_2 exon 45330072 45330569 45330072 ID=Msa0602100-mRNA-1:exon:10156;Parent=Msa0602100-mRNA-1
chr4_2 CDS 45329457 45329780 45329457 ID=Msa0602100-mRNA-1:cds;Parent=Msa0602100-mRNA-1
chr4_2 CDS 45330072 45330416 45330072 ID=Msa0602100-mRNA-1:cds;Parent=Msa0602100-mRNA-1
chr4_2 three_prime_UTR 45330417 45330569 45330417 ID=Msa0602100-mRNA-1:three_prime_utr;Parent=Msa0602100-mRNA-1
Gene Sequence

>Msa0602100

AAATTAATTAAGATGGCAGATCAAGTGAAGCTACATGGATTTTGGTACAGTCCTTTTACTTTGAGGGTAGTATTGACCCTTAAGCTAAAAGGTATACCATATGAGAACATAGAAGAAGATCGTTTCAACAAGAGTCCTCAACTTCTTCAATACAATCCAGTGCACAAGAAAACTCCAGTGTTAGTTCATGATGGAAAACCTCTATGTGAGTCTATGATCATTGTTGAATACATTGATGAGATATGGCCACAATACCCTTTGCTTCCTGTTGATCCCTATGAGAGAGCCCAAGCTCGGTTCTGGGTAAAATATGTTGATGACATTATTCCTGCAGTTGGTGCACTCGTTAGTAGCGGTGGCGATGAAGAGCGGAAGAATACCATAGCGAAAATCTGGGAACATCTTAGAGTTGTTGAAGAACAATGCATTGACTACAAGAAGAAACTTTTTGGAGGAGACACCGTTAACATTCTGGACATAGCTCTTGGATCAACTATCAAGTTTCTTGTAACTATTGAAGATATCATTGAATTTAAGATCCTAGCAGCTGAGAAATTCCCTCACTTGCATGCATGGTTTGAAAATTTCAAGAATGTACCTGTCATAGGTGAAAATCTTCCTGATCATGAGAAACTGATAGCTTTTATGAAGGCTGTCATACAAAAGTAG

Protein sequence

>Msa0602100

KLIKMADQVKLHGFWYSPFTLRVVLTLKLKGIPYENIEEDRFNKSPQLLQYNPVHKKTPVLVHDGKPLCESMIIVEYIDEIWPQYPLLPVDPYERAQARFWVKYVDDIIPAVGALVSSGGDEERKNTIAKIWEHLRVVEEQCIDYKKKLFGGDTVNILDIALGSTIKFLVTIEDIIEFKILAAEKFPHLHAWFENFKNVPVIGENLPDHEKLIAFMKAVIQK*