Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0587710 | PNY17407.1 | 88.474 | 642 | 43 | 4 | 47 | 686 | 3 | 615 | 0.0 | 1152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0587710 | sp|Q9XI23|BOR4_ARATH | 71.041 | 663 | 182 | 4 | 41 | 694 | 10 | 671 | 0.0 | 987 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0587710 | A0A2K3PQ58 | 88.474 | 642 | 43 | 4 | 47 | 686 | 3 | 615 | 0.0 | 1152 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011010 | Msa0587710 | 0.806545 | 7.810644e-50 | -8.615850e-47 |
Msa0011040 | Msa0587710 | 0.801017 | 1.098206e-48 | -8.615850e-47 |
Msa0025570 | Msa0587710 | 0.807232 | 5.590006e-50 | -8.615850e-47 |
Msa0048380 | Msa0587710 | 0.812873 | 3.405379e-51 | -8.615850e-47 |
Msa0073110 | Msa0587710 | 0.821165 | 4.667514e-53 | -8.615850e-47 |
Msa0080100 | Msa0587710 | -0.804192 | 2.431171e-49 | -8.615850e-47 |
Msa0098380 | Msa0587710 | 0.816669 | 4.907678e-52 | -8.615850e-47 |
Msa0107830 | Msa0587710 | 0.808352 | 3.229998e-50 | -8.615850e-47 |
Msa0117650 | Msa0587710 | 0.841709 | 4.031595e-58 | -8.615850e-47 |
Msa0139680 | Msa0587710 | 0.829171 | 5.976518e-55 | -8.615850e-47 |
Msa0185040 | Msa0587710 | 0.831489 | 1.621302e-55 | -8.615850e-47 |
Msa0378320 | Msa0587710 | 0.801020 | 1.096189e-48 | -8.615850e-47 |
Msa0390200 | Msa0587710 | 0.804854 | 1.769004e-49 | -8.615850e-47 |
Msa0405200 | Msa0587710 | 0.811882 | 5.605011e-51 | -8.615850e-47 |
Msa0405210 | Msa0587710 | 0.813808 | 2.121623e-51 | -8.615850e-47 |
Msa0449290 | Msa0587710 | 0.824570 | 7.515691e-54 | -8.615850e-47 |
Msa0449380 | Msa0587710 | 0.845897 | 3.049480e-59 | -8.615850e-47 |
Msa0449940 | Msa0587710 | 0.831022 | 2.112240e-55 | -8.615850e-47 |
Msa0257760 | Msa0587710 | 0.801659 | 8.112808e-49 | -8.615850e-47 |
Msa0261020 | Msa0587710 | -0.802496 | 5.458427e-49 | -8.615850e-47 |
Msa0269710 | Msa0587710 | 0.819086 | 1.396821e-52 | -8.615850e-47 |
Msa0275730 | Msa0587710 | 0.814656 | 1.378889e-51 | -8.615850e-47 |
Msa0280160 | Msa0587710 | 0.811327 | 7.402034e-51 | -8.615850e-47 |
Msa0282830 | Msa0587710 | 0.801896 | 7.250864e-49 | -8.615850e-47 |
Msa0310190 | Msa0587710 | 0.817407 | 3.351089e-52 | -8.615850e-47 |
Msa0320140 | Msa0587710 | 0.800313 | 1.528253e-48 | -8.615850e-47 |
Msa0331190 | Msa0587710 | 0.803015 | 4.265270e-49 | -8.615850e-47 |
Msa0345050 | Msa0587710 | 0.808454 | 3.073538e-50 | -8.615850e-47 |
Msa0354600 | Msa0587710 | 0.808054 | 3.739148e-50 | -8.615850e-47 |
Msa0356180 | Msa0587710 | 0.823552 | 1.302451e-53 | -8.615850e-47 |
Msa0356360 | Msa0587710 | 0.825484 | 4.570252e-54 | -8.615850e-47 |
Msa0497680 | Msa0587710 | 0.801269 | 9.752653e-49 | -8.615850e-47 |
Msa0517200 | Msa0587710 | 0.808208 | 3.467315e-50 | -8.615850e-47 |
Msa0524710 | Msa0587710 | 0.806662 | 7.375931e-50 | -8.615850e-47 |
Msa0531050 | Msa0587710 | 0.818604 | 1.797862e-52 | -8.615850e-47 |
Msa0547370 | Msa0587710 | 0.815827 | 7.572468e-52 | -8.615850e-47 |
Msa0561830 | Msa0587710 | 0.805353 | 1.390752e-49 | -8.615850e-47 |
Msa0587710 | Msa0587730 | 0.807180 | 5.734185e-50 | -8.615850e-47 |
Msa0587710 | Msa0588040 | 0.802369 | 5.795440e-49 | -8.615850e-47 |
Msa0587710 | Msa0597800 | 0.833577 | 4.924067e-56 | -8.615850e-47 |
Msa0587710 | Msa0597820 | 0.848790 | 4.895669e-60 | -8.615850e-47 |
Msa0587710 | Msa0603310 | 0.819204 | 1.313267e-52 | -8.615850e-47 |
Msa0587710 | Msa0628200 | 0.805876 | 1.079994e-49 | -8.615850e-47 |
Msa0587710 | Msa0637590 | 0.839036 | 2.014635e-57 | -8.615850e-47 |
Msa0587710 | Msa0637700 | 0.819016 | 1.449112e-52 | -8.615850e-47 |
Msa0587710 | Msa0655370 | 0.800415 | 1.456709e-48 | -8.615850e-47 |
Msa0587710 | Msa0659230 | 0.804432 | 2.166512e-49 | -8.615850e-47 |
Msa0587710 | Msa0680460 | 0.819655 | 1.036264e-52 | -8.615850e-47 |
Msa0587710 | Msa0682910 | 0.835359 | 1.757141e-56 | -8.615850e-47 |
Msa0587710 | Msa0709140 | 0.833625 | 4.788361e-56 | -8.615850e-47 |
Msa0587710 | Msa0716980 | 0.817955 | 2.521640e-52 | -8.615850e-47 |
Msa0587710 | Msa0719600 | 0.844114 | 9.239603e-59 | -8.615850e-47 |
Msa0587710 | Msa0750830 | 0.804628 | 1.971625e-49 | -8.615850e-47 |
Msa0587710 | Msa0751510 | 0.821469 | 3.970642e-53 | -8.615850e-47 |
Msa0587710 | Msa0763370 | 0.826121 | 3.227985e-54 | -8.615850e-47 |
Msa0587710 | Msa0829990 | 0.830633 | 2.630708e-55 | -8.615850e-47 |
Msa0587710 | Msa0841090 | 0.822961 | 1.789726e-53 | -8.615850e-47 |
Msa0587710 | Msa0966590 | 0.838734 | 2.412136e-57 | -8.615850e-47 |
Msa0587710 | Msa1034950 | 0.806069 | 9.836541e-50 | -8.615850e-47 |
Msa0587710 | Msa1035050 | 0.829815 | 4.167567e-55 | -8.615850e-47 |
Msa0587710 | Msa1037360 | 0.803114 | 4.068284e-49 | -8.615850e-47 |
Msa0587710 | Msa1075010 | 0.805492 | 1.300233e-49 | -8.615850e-47 |
Msa0587710 | Msa1075090 | 0.813657 | 2.291142e-51 | -8.615850e-47 |
Msa0587710 | Msa1077970 | 0.826124 | 3.222861e-54 | -8.615850e-47 |
Msa0587710 | Msa1099650 | 0.817987 | 2.479501e-52 | -8.615850e-47 |
Msa0587710 | Msa1107220 | 0.811254 | 7.674371e-51 | -8.615850e-47 |
Msa0587710 | Msa1107250 | 0.828144 | 1.058616e-54 | -8.615850e-47 |
Msa0587710 | Msa1115980 | 0.801282 | 9.690449e-49 | -8.615850e-47 |
Msa0587710 | Msa1131120 | 0.808503 | 3.000100e-50 | -8.615850e-47 |
Msa0587710 | Msa1136630 | 0.804658 | 1.943336e-49 | -8.615850e-47 |
Msa0587710 | Msa1136690 | 0.804752 | 1.857748e-49 | -8.615850e-47 |
Msa0587710 | Msa1136760 | 0.800722 | 1.261431e-48 | -8.615850e-47 |
Msa0587710 | Msa1147010 | 0.800262 | 1.565038e-48 | -8.615850e-47 |
Msa0587710 | Msa1164230 | 0.811279 | 7.581763e-51 | -8.615850e-47 |
Msa0587710 | Msa1191270 | 0.810961 | 8.882724e-51 | -8.615850e-47 |
Msa0587710 | Msa1223710 | 0.820805 | 5.647718e-53 | -8.615850e-47 |
Msa0587710 | Msa1233810 | 0.804457 | 2.140179e-49 | -8.615850e-47 |
Msa0587710 | Msa1239210 | 0.814399 | 1.571838e-51 | -8.615850e-47 |
Msa0587710 | Msa1254870 | 0.803809 | 2.919485e-49 | -8.615850e-47 |
Msa0587710 | Msa1263370 | 0.800106 | 1.683798e-48 | -8.615850e-47 |
Msa0587710 | Msa1269200 | 0.805027 | 1.627597e-49 | -8.615850e-47 |
Msa0587710 | Msa1302630 | 0.803644 | 3.158673e-49 | -8.615850e-47 |
Msa0587710 | Msa1307530 | 0.836355 | 9.823037e-57 | -8.615850e-47 |
Msa0587710 | Msa1317740 | 0.800612 | 1.327926e-48 | -8.615850e-47 |
Msa0587710 | Msa1328430 | 0.801817 | 7.529225e-49 | -8.615850e-47 |
Msa0587710 | Msa1389170 | 0.823062 | 1.695802e-53 | -8.615850e-47 |
Msa0587710 | Msa1393730 | 0.809517 | 1.820007e-50 | -8.615850e-47 |
Msa0587710 | Msa1405040 | -0.802037 | 6.784249e-49 | -8.615850e-47 |
Msa0587710 | Msa1437590 | 0.806538 | 7.835498e-50 | -8.615850e-47 |
Msa0587710 | Msa1437780 | 0.802092 | 6.610072e-49 | -8.615850e-47 |
Msa0587710 | Msa1455200 | 0.819906 | 9.079657e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0587710 | MtrunA17_Chr2g0332351 | 78.723 | 658 | 133 | 4 | 36 | 686 | 4 | 661 | 0.0 | 1058 |
Msa0587710 | MtrunA17_Chr2g0332331 | 78.163 | 664 | 137 | 5 | 36 | 692 | 4 | 666 | 0.0 | 1055 |
Msa0587710 | MtrunA17_Chr2g0332471 | 78.274 | 649 | 134 | 4 | 36 | 677 | 4 | 652 | 0.0 | 1035 |
Msa0587710 | MtrunA17_Chr2g0332441 | 80.205 | 586 | 111 | 4 | 78 | 658 | 2 | 587 | 0.0 | 951 |
Msa0587710 | MtrunA17_Chr3g0138161 | 67.262 | 672 | 209 | 4 | 40 | 703 | 1 | 669 | 0.0 | 923 |
Msa0587710 | MtrunA17_Chr2g0332491 | 69.814 | 646 | 109 | 3 | 36 | 677 | 4 | 567 | 0.0 | 889 |
Msa0587710 | MtrunA17_Chr1g0148971 | 66.411 | 652 | 205 | 4 | 43 | 683 | 20 | 668 | 0.0 | 888 |
Msa0587710 | MtrunA17_Chr7g0270341 | 58.040 | 653 | 262 | 4 | 37 | 678 | 1 | 652 | 0.0 | 755 |
Msa0587710 | MtrunA17_Chr3g0117521 | 58.089 | 649 | 259 | 7 | 37 | 673 | 1 | 648 | 0.0 | 728 |
Msa0587710 | MtrunA17_Chr2g0293661 | 57.098 | 641 | 263 | 5 | 43 | 673 | 7 | 645 | 0.0 | 722 |
Msa0587710 | MtrunA17_Chr2g0332391 | 79.598 | 348 | 68 | 3 | 211 | 555 | 1 | 348 | 0.0 | 570 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0587710 | AT1G15460.2 | 71.041 | 663 | 182 | 4 | 41 | 694 | 10 | 671 | 0.0 | 987 |
Msa0587710 | AT1G15460.1 | 71.041 | 663 | 182 | 4 | 41 | 694 | 10 | 671 | 0.0 | 987 |
Msa0587710 | AT1G74810.7 | 68.318 | 666 | 201 | 5 | 36 | 692 | 5 | 669 | 0.0 | 951 |
Msa0587710 | AT1G74810.4 | 68.318 | 666 | 201 | 5 | 36 | 692 | 5 | 669 | 0.0 | 951 |
Msa0587710 | AT1G74810.1 | 68.318 | 666 | 201 | 5 | 36 | 692 | 5 | 669 | 0.0 | 951 |
Msa0587710 | AT1G15460.3 | 72.654 | 618 | 160 | 3 | 41 | 649 | 10 | 627 | 0.0 | 940 |
Msa0587710 | AT1G74810.6 | 68.069 | 642 | 194 | 6 | 72 | 703 | 9 | 649 | 0.0 | 906 |
Msa0587710 | AT1G74810.3 | 68.069 | 642 | 194 | 6 | 72 | 703 | 9 | 649 | 0.0 | 906 |
Msa0587710 | AT4G32510.2 | 65.179 | 672 | 217 | 6 | 37 | 692 | 1 | 671 | 0.0 | 898 |
Msa0587710 | AT4G32510.1 | 65.460 | 663 | 213 | 5 | 37 | 683 | 1 | 663 | 0.0 | 892 |
Msa0587710 | AT5G25430.1 | 64.939 | 656 | 221 | 2 | 35 | 681 | 1 | 656 | 0.0 | 889 |
Msa0587710 | AT1G15460.4 | 69.965 | 566 | 160 | 4 | 138 | 694 | 1 | 565 | 0.0 | 824 |
Msa0587710 | AT1G74810.5 | 67.730 | 564 | 172 | 5 | 138 | 692 | 1 | 563 | 0.0 | 794 |
Msa0587710 | AT3G62270.1 | 59.380 | 645 | 253 | 4 | 37 | 673 | 1 | 644 | 0.0 | 773 |
Msa0587710 | AT2G47160.1 | 59.133 | 646 | 252 | 4 | 37 | 673 | 1 | 643 | 0.0 | 769 |
Msa0587710 | AT2G47160.2 | 56.930 | 671 | 252 | 5 | 37 | 673 | 1 | 668 | 0.0 | 756 |
Msa0587710 | AT3G06450.3 | 55.748 | 635 | 277 | 2 | 43 | 673 | 9 | 643 | 0.0 | 750 |
Msa0587710 | AT3G06450.1 | 55.748 | 635 | 277 | 2 | 43 | 673 | 9 | 643 | 0.0 | 750 |
Msa0587710 | AT3G06450.2 | 55.748 | 635 | 277 | 2 | 43 | 673 | 9 | 643 | 0.0 | 750 |
Msa0587710 | AT3G06450.4 | 55.748 | 635 | 277 | 2 | 43 | 673 | 9 | 643 | 0.0 | 750 |
Msa0587710 | AT1G74810.2 | 67.742 | 527 | 160 | 5 | 175 | 692 | 1 | 526 | 0.0 | 739 |
Find 149 sgRNAs with CRISPR-Local
Find 406 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACATATTATTTCATTATT+AGG | 0.167842 | 4_2:-9382239 | None:intergenic |
GGAATCATACATTCAATTAT+TGG | 0.192328 | 4_2:+9377499 | Msa0587710:CDS |
GTCTTCCTGGTAATCAATTC+TGG | 0.223462 | 4_2:+9381074 | Msa0587710:CDS |
TTTCCAATGTGTCTATTTCT+TGG | 0.240352 | 4_2:+9381400 | Msa0587710:CDS |
GTCTATTTCTTGGTTTGTTT+TGG | 0.242089 | 4_2:+9381410 | Msa0587710:CDS |
CACATACTGACTCACCTTAA+TGG | 0.253705 | 4_2:-9378374 | None:intergenic |
CTTTGCTCATTTACTCTAAC+AGG | 0.255775 | 4_2:-9380935 | None:intergenic |
TGTGCTTTCCGTTCTGGTAT+TGG | 0.264166 | 4_2:+9376252 | Msa0587710:CDS |
TGCCTTTCTTGGTGGTAGTA+TGG | 0.266787 | 4_2:+9378974 | Msa0587710:CDS |
TGGACTTGTGCTTTCCGTTC+TGG | 0.268770 | 4_2:+9376246 | Msa0587710:CDS |
AGACTATGGTGTGCCTTTCT+TGG | 0.270893 | 4_2:+9378963 | Msa0587710:CDS |
TCACCTATAATTCCCTTAAA+AGG | 0.274765 | 4_2:-9376189 | None:intergenic |
AGAGCAAGATCTTGGTTATA+TGG | 0.279601 | 4_2:+9378622 | Msa0587710:CDS |
CATTATGACATATTCTTACT+AGG | 0.298991 | 4_2:+9379433 | Msa0587710:CDS |
ATACTACCATTGGGCCTTCT+TGG | 0.304107 | 4_2:+9375083 | Msa0587710:CDS |
TCACATAAAGCCAGTGAAAT+TGG | 0.304348 | 4_2:-9378540 | None:intergenic |
GTTCATTCAAGAGGCCATTA+AGG | 0.306748 | 4_2:+9378360 | Msa0587710:CDS |
GCTTTACCTGTTATTGCCTT+TGG | 0.313809 | 4_2:+9376400 | Msa0587710:CDS |
CTAAAAGAGGTAATCCTAAA+AGG | 0.314929 | 4_2:+9380851 | Msa0587710:CDS |
GTGCTTTCCGTTCTGGTATT+GGG | 0.321104 | 4_2:+9376253 | Msa0587710:CDS |
TGATATCATTCTTACTTGTT+TGG | 0.322726 | 4_2:-9375148 | None:intergenic |
CTAAGGACTTGGAGAAAATA+TGG | 0.324070 | 4_2:+9382284 | Msa0587710:three_prime_UTR |
TTCTCCTAGCTTTGGATCAA+TGG | 0.328601 | 4_2:+9381770 | Msa0587710:CDS |
CTTTATGTGAATGGTTTACT+AGG | 0.330252 | 4_2:+9378553 | Msa0587710:CDS |
TGCTTTATTTATGCTTGAAA+TGG | 0.338977 | 4_2:+9376152 | Msa0587710:CDS |
GCTAGCAACTCTGAAATCTA+TGG | 0.346046 | 4_2:+9380343 | Msa0587710:CDS |
CTTTGATCATAGCGTTGCTT+CGG | 0.348715 | 4_2:+9379363 | Msa0587710:CDS |
AAGAAGGCTATGTATCTAAT+TGG | 0.349778 | 4_2:-9381371 | None:intergenic |
TTTGATCATAGCGTTGCTTC+GGG | 0.355202 | 4_2:+9379364 | Msa0587710:CDS |
GGAAACAAGATTCCAGCTAT+TGG | 0.355801 | 4_2:-9381446 | None:intergenic |
ATGGCCATTGATAGTCTTCC+TGG | 0.358761 | 4_2:+9381061 | Msa0587710:CDS |
CTAGGTATTATATTCACATT+TGG | 0.359706 | 4_2:+9378571 | Msa0587710:CDS |
GCAAGCAGTGTTTGTAGAAA+TGG | 0.366878 | 4_2:+9380372 | Msa0587710:CDS |
ATTCCTGCCTTGATGGTAGC+AGG | 0.375523 | 4_2:+9379331 | Msa0587710:CDS |
AGAAGCTTTATTGCAGACTA+TGG | 0.379594 | 4_2:+9378949 | Msa0587710:CDS |
TGCTCACCAAAGGCAATAAC+AGG | 0.383728 | 4_2:-9376406 | None:intergenic |
TTTCACTGGCTTTATGTGAA+TGG | 0.387832 | 4_2:+9378544 | Msa0587710:CDS |
CATATTCTTACTAGGATTTG+TGG | 0.394900 | 4_2:+9379441 | Msa0587710:CDS |
AATTTCTCAGGGTTTGTGTA+TGG | 0.396610 | 4_2:+9378233 | Msa0587710:intron |
AGAGGAGCAACTAGTCTTCT+TGG | 0.398425 | 4_2:-9379042 | None:intergenic |
CAAATGGATTCTCCTAGCTT+TGG | 0.404763 | 4_2:+9381762 | Msa0587710:CDS |
CTTTCAGACTTCTGTGGAAA+GGG | 0.407120 | 4_2:+9380817 | Msa0587710:intron |
GTGGGGATACTTTGCATACA+TGG | 0.407230 | 4_2:+9381042 | Msa0587710:CDS |
CACAATGTTATAAAGATGAT+TGG | 0.423839 | 4_2:+9376226 | Msa0587710:CDS |
ACTTTGATTTGTGGACTACT+TGG | 0.424729 | 4_2:+9379578 | Msa0587710:CDS |
ATCCTAAAAGGTGAAGATAA+AGG | 0.426756 | 4_2:+9380863 | Msa0587710:CDS |
TACTACCATTGGGCCTTCTT+GGG | 0.427279 | 4_2:+9375084 | Msa0587710:CDS |
TTCTCTTTGTATCACCTAGT+AGG | 0.427294 | 4_2:+9381110 | Msa0587710:CDS |
GGGTCATCATGCTTCCTTTG+TGG | 0.430230 | 4_2:+9381340 | Msa0587710:CDS |
CTGGCTTCTACAGCCATTTG+TGG | 0.431750 | 4_2:+9377478 | Msa0587710:CDS |
ATATCGTCAACAGATTTACT+AGG | 0.432276 | 4_2:+9378299 | Msa0587710:CDS |
GACTAGTTGCTCCTCTAGCT+TGG | 0.433751 | 4_2:+9379049 | Msa0587710:CDS |
AGAGCAGAAGAGCAAGATCT+TGG | 0.434649 | 4_2:+9378614 | Msa0587710:CDS |
TGGTGAGGACTAAAGAGCTT+GGG | 0.435731 | 4_2:-9381512 | None:intergenic |
CATGCGTCAATATGCTTCTC+AGG | 0.440694 | 4_2:-9380908 | None:intergenic |
ACTTACTTGAACCACCTACT+AGG | 0.441604 | 4_2:-9381124 | None:intergenic |
GAGCAAGATCTTGGTTATAT+GGG | 0.443047 | 4_2:+9378623 | Msa0587710:CDS |
GCAAAGAAAATATAGGTAGT+TGG | 0.454754 | 4_2:-9376373 | None:intergenic |
AATCTACATCTTTACACCAT+TGG | 0.456846 | 4_2:+9379073 | Msa0587710:CDS |
CTGCATCTAGTTCTTTAAGA+TGG | 0.457354 | 4_2:-9381532 | None:intergenic |
CAAATAGCTAGCTAAGGACT+TGG | 0.463032 | 4_2:+9382273 | Msa0587710:exon |
AGATCTTGGTTATATGGGAC+AGG | 0.463073 | 4_2:+9378628 | Msa0587710:CDS |
TCTTCCTGGTAATCAATTCT+GGG | 0.464011 | 4_2:+9381075 | Msa0587710:CDS |
CTCCTACAATGAGGAGTGGT+TGG | 0.469360 | 4_2:-9377525 | None:intergenic |
ACGTTACAGACTTTGATTTG+TGG | 0.470008 | 4_2:+9379569 | Msa0587710:intron |
TATCCCCACAAAACAGAAGT+TGG | 0.470017 | 4_2:-9381028 | None:intergenic |
TTTAGCAAAGTTGTACAAGT+AGG | 0.472082 | 4_2:-9377575 | None:intergenic |
CTATGGTGTGCCTTTCTTGG+TGG | 0.474834 | 4_2:+9378966 | Msa0587710:CDS |
CTCCTAGCGATATTTAATGT+TGG | 0.476035 | 4_2:+9378274 | Msa0587710:CDS |
GCCTTCTTGGGTAGCAACAC+AGG | 0.478480 | 4_2:+9375096 | Msa0587710:CDS |
TGAATGTATGATTCCACAAA+TGG | 0.480302 | 4_2:-9377491 | None:intergenic |
TTCAGTCTTGTTCATTCAAG+AGG | 0.484712 | 4_2:+9378351 | Msa0587710:CDS |
CTTTCCCAGAATTGATTACC+AGG | 0.490212 | 4_2:-9381079 | None:intergenic |
CCTCTCAGTTCTCAAGGGTC+TGG | 0.490548 | 4_2:+9379652 | Msa0587710:CDS |
ATGGTATATGATACTACCAT+TGG | 0.493742 | 4_2:+9375073 | Msa0587710:CDS |
CATACACTTAAAGAGAGTCT+TGG | 0.497278 | 4_2:-9381581 | None:intergenic |
CTTGGCTTACCTCCTTCAAA+TGG | 0.497540 | 4_2:+9379596 | Msa0587710:CDS |
TTCCTGCCTTGATGGTAGCA+GGG | 0.499828 | 4_2:+9379332 | Msa0587710:CDS |
GTCCATACTACCACCAAGAA+AGG | 0.500820 | 4_2:-9378976 | None:intergenic |
CAGAACAATACCAATTTCAC+TGG | 0.503913 | 4_2:+9378530 | Msa0587710:CDS |
ACTAGTTGCTCCTCTAGCTT+GGG | 0.506471 | 4_2:+9379050 | Msa0587710:CDS |
GCTGAATATGAAGAAATTGC+TGG | 0.508359 | 4_2:+9381554 | Msa0587710:CDS |
GTTTGGCCGCTCTTTCGCTA+AGG | 0.512973 | 4_2:-9375131 | None:intergenic |
TAAGAGCCTCTCAGTTCTCA+AGG | 0.513791 | 4_2:+9379646 | Msa0587710:CDS |
AGCAGAAGCAAAGAAAATAT+AGG | 0.515249 | 4_2:-9376380 | None:intergenic |
GGAATTATAGGTGATATAAG+AGG | 0.515305 | 4_2:+9376198 | Msa0587710:CDS |
TGAGGAAGAACACCATTTGA+AGG | 0.516885 | 4_2:-9379608 | None:intergenic |
GGCCAACCACTCCTCATTGT+AGG | 0.517222 | 4_2:+9377523 | Msa0587710:CDS |
ATGGTGAGGACTAAAGAGCT+TGG | 0.518406 | 4_2:-9381513 | None:intergenic |
ATTTCCATTGATCCAAAGCT+AGG | 0.519360 | 4_2:-9381774 | None:intergenic |
GTGACATGGATTCCAATAGC+TGG | 0.521942 | 4_2:+9381434 | Msa0587710:CDS |
ACCTGTGTTGCTACCCAAGA+AGG | 0.527335 | 4_2:-9375097 | None:intergenic |
CTGGTAATCAATTCTGGGAA+AGG | 0.528888 | 4_2:+9381080 | Msa0587710:CDS |
TCATAGCGTTGCTTCGGGGA+TGG | 0.529659 | 4_2:+9379369 | Msa0587710:CDS |
AGTCTTCTTGGAATTTCAGA+AGG | 0.536248 | 4_2:-9379030 | None:intergenic |
GTAGATGATCAGAAGAAAGA+TGG | 0.537686 | 4_2:+9380288 | Msa0587710:intron |
ACATTGGAAAATTGTGAAGA+AGG | 0.538005 | 4_2:-9381387 | None:intergenic |
ATTACCAGGAAGACTATCAA+TGG | 0.540612 | 4_2:-9381065 | None:intergenic |
TTATGCTGCAGGACATGGGA+AGG | 0.542317 | 4_2:+9379278 | Msa0587710:intron |
TTCGGGGATGGCACAGCAGA+AGG | 0.544389 | 4_2:+9379381 | Msa0587710:CDS |
TGGTATATGATACTACCATT+GGG | 0.548127 | 4_2:+9375074 | Msa0587710:CDS |
AATCATCAAATAGCTAGCTA+AGG | 0.548258 | 4_2:+9382267 | Msa0587710:exon |
ACTTTCAGACTTCTGTGGAA+AGG | 0.550041 | 4_2:+9380816 | Msa0587710:intron |
TATTTATGCTTGAAATGGAG+TGG | 0.551216 | 4_2:+9376157 | Msa0587710:CDS |
TCTTTGTATCACCTAGTAGG+TGG | 0.553864 | 4_2:+9381113 | Msa0587710:CDS |
CTTGGAGAAAATATGGTAAG+TGG | 0.556482 | 4_2:+9382291 | Msa0587710:three_prime_UTR |
AGCCCTGCTACCATCAAGGC+AGG | 0.556589 | 4_2:-9379334 | None:intergenic |
AAACCAAGAAATAGACACAT+TGG | 0.559958 | 4_2:-9381403 | None:intergenic |
CAATTTATGCTGCAGGACAT+GGG | 0.563496 | 4_2:+9379274 | Msa0587710:intron |
TAGGTATACATGATGATGGT+GGG | 0.568391 | 4_2:-9377556 | None:intergenic |
TCGATTCAGCTGCTCACCAA+AGG | 0.568516 | 4_2:-9376416 | None:intergenic |
GGTTAACTTTCAGACTTCTG+TGG | 0.572038 | 4_2:+9380811 | Msa0587710:intron |
GTAAAGCCCTGCTACCATCA+AGG | 0.579565 | 4_2:-9379338 | None:intergenic |
CACCATGCAAAACTTGACCT+TGG | 0.580372 | 4_2:-9382356 | None:intergenic |
TCTAGTTCTTTAAGATGGTG+AGG | 0.583864 | 4_2:-9381527 | None:intergenic |
ATCATACATTCAATTATTGG+AGG | 0.587308 | 4_2:+9377502 | Msa0587710:CDS |
TATCGTCAACAGATTTACTA+GGG | 0.593342 | 4_2:+9378300 | Msa0587710:CDS |
TATGCTGCAGGACATGGGAA+GGG | 0.598343 | 4_2:+9379279 | Msa0587710:intron |
GGAACTAGAGAACCTAAAAG+AGG | 0.603100 | 4_2:+9380838 | Msa0587710:CDS |
TGCCAACATTAAATATCGCT+AGG | 0.608914 | 4_2:-9378276 | None:intergenic |
TTAGTATGCATAGGAGATTG+AGG | 0.610628 | 4_2:-9379626 | None:intergenic |
AAAGATGGTTGAAAGTGCCA+AGG | 0.614262 | 4_2:+9380303 | Msa0587710:CDS |
GATGTAGATTCCCAAGCTAG+AGG | 0.615069 | 4_2:-9379060 | None:intergenic |
GAGAGGCTCTTAGTATGCAT+AGG | 0.616506 | 4_2:-9379635 | None:intergenic |
CGCTAGGAGAAACAGCAAGA+GGG | 0.616694 | 4_2:-9378260 | None:intergenic |
AAGAGCCTCTCAGTTCTCAA+GGG | 0.616777 | 4_2:+9379647 | Msa0587710:CDS |
CAAGTAGGTATACATGATGA+TGG | 0.617804 | 4_2:-9377560 | None:intergenic |
AATTGGTACTGTTTCCACAA+AGG | 0.619899 | 4_2:-9381354 | None:intergenic |
GATGAATTAACTACAAGCAG+AGG | 0.625445 | 4_2:+9381816 | Msa0587710:CDS |
TGCTACCCAAGAAGGCCCAA+TGG | 0.625500 | 4_2:-9375089 | None:intergenic |
GGTGAGGACTAAAGAGCTTG+GGG | 0.627520 | 4_2:-9381511 | None:intergenic |
GTAGGTATACATGATGATGG+TGG | 0.632071 | 4_2:-9377557 | None:intergenic |
TTACTTTGATAACTGTCCAA+TGG | 0.633020 | 4_2:-9379089 | None:intergenic |
TCTTCAATGCTGTATAGAGA+AGG | 0.634140 | 4_2:-9378594 | None:intergenic |
ATGTCATAATGATATGCAGA+AGG | 0.635380 | 4_2:-9379421 | None:intergenic |
TTGATCATAGCGTTGCTTCG+GGG | 0.645474 | 4_2:+9379365 | Msa0587710:CDS |
ATTGAGCACAGTAGAAACAC+TGG | 0.647913 | 4_2:+9377459 | Msa0587710:CDS |
GGAAGAACACCATTTGAAGG+AGG | 0.648209 | 4_2:-9379605 | None:intergenic |
AAAGAGAAAGCTATCAACCA+AGG | 0.659294 | 4_2:+9382339 | Msa0587710:three_prime_UTR |
TCGCTAGGAGAAACAGCAAG+AGG | 0.660719 | 4_2:-9378261 | None:intergenic |
AGCTTCAGAGAGGAAAGACA+TGG | 0.666851 | 4_2:+9381861 | Msa0587710:CDS |
AAACCTACCCAATACCAGAA+CGG | 0.672800 | 4_2:-9376260 | None:intergenic |
GAGCAGCTGAATCGAGACAC+AGG | 0.681742 | 4_2:+9376424 | Msa0587710:CDS |
TCAACACCTTAGCGAAAGAG+CGG | 0.682983 | 4_2:+9375125 | Msa0587710:CDS |
GCAACTCCTACAATGAGGAG+TGG | 0.695067 | 4_2:-9377529 | None:intergenic |
CAGAACTTTAAGCTTCAGAG+AGG | 0.700821 | 4_2:+9381851 | Msa0587710:CDS |
GAGGACTAAAGAGCTTGGGG+AGG | 0.702593 | 4_2:-9381508 | None:intergenic |
GTTCTGCAACTCCTACAATG+AGG | 0.722737 | 4_2:-9377534 | None:intergenic |
CCAGACCCTTGAGAACTGAG+AGG | 0.733266 | 4_2:-9379652 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATTAATATAAATTAA+TGG | - | chr4_2:9377097-9377116 | None:intergenic | 0.0% |
!! | TTAAAAAATAAAAAATAAAT+TGG | - | chr4_2:9382161-9382180 | None:intergenic | 0.0% |
!!! | TATATGTAATTTTGTAAAAT+AGG | + | chr4_2:9375366-9375385 | Msa0587710:intron | 10.0% |
!!! | GAAAAAAAAAAAAAAGATTT+TGG | - | chr4_2:9375773-9375792 | None:intergenic | 10.0% |
!!! | TGTTTTATACATAAAATAAA+CGG | + | chr4_2:9375836-9375855 | Msa0587710:intron | 10.0% |
!!! | TTTTAACAATATTTAACAAA+CGG | + | chr4_2:9377300-9377319 | Msa0587710:intron | 10.0% |
!! | CAAATTCTTTATTATTATAA+TGG | + | chr4_2:9377660-9377679 | Msa0587710:intron | 10.0% |
!!! | TTATAATTTTTATAAAGCAT+AGG | + | chr4_2:9379689-9379708 | Msa0587710:intron | 10.0% |
!! | GTATTAATGATTAAATTAAA+TGG | + | chr4_2:9380235-9380254 | Msa0587710:intron | 10.0% |
!!! | AATTTAAAATCATGTTATTT+TGG | + | chr4_2:9381305-9381324 | Msa0587710:intron | 10.0% |
!!! | AATATTGATTTTGAAAGTAT+AGG | - | chr4_2:9375320-9375339 | None:intergenic | 15.0% |
!! | TATAATTCTAATTAAAGATG+AGG | + | chr4_2:9376712-9376731 | Msa0587710:intron | 15.0% |
!! | TTAAGCTTATAAAATAACTT+TGG | - | chr4_2:9376811-9376830 | None:intergenic | 15.0% |
!! | ACAAAACAAATTATAGAAAA+AGG | + | chr4_2:9377375-9377394 | Msa0587710:intron | 15.0% |
!! | TTATTTAAAGGTTAATTCTA+CGG | + | chr4_2:9377730-9377749 | Msa0587710:intron | 15.0% |
!! | TATTTCATCTAATTTACTAA+TGG | - | chr4_2:9377987-9378006 | None:intergenic | 15.0% |
!! | ATTGATATTATTAATTTCTC+AGG | + | chr4_2:9378221-9378240 | Msa0587710:intron | 15.0% |
!! | TTGATATTATTAATTTCTCA+GGG | + | chr4_2:9378222-9378241 | Msa0587710:intron | 15.0% |
!!! | AAATATAATTTTGCTTGAAA+AGG | + | chr4_2:9378430-9378449 | Msa0587710:intron | 15.0% |
!!! | TATCAACTTTTACAAAAATA+TGG | + | chr4_2:9379203-9379222 | Msa0587710:intron | 15.0% |
!! | TTTCTAATAGTATTTACAAA+GGG | - | chr4_2:9379489-9379508 | None:intergenic | 15.0% |
!! | TACATAATATGATATTATAG+TGG | + | chr4_2:9379764-9379783 | Msa0587710:intron | 15.0% |
!! | ACCCATAATTATTTAAAAAA+GGG | + | chr4_2:9380688-9380707 | Msa0587710:intron | 15.0% |
!!! | TCCCTTTTTTAAATAATTAT+GGG | - | chr4_2:9380692-9380711 | None:intergenic | 15.0% |
!!! | TTCCCTTTTTTAAATAATTA+TGG | - | chr4_2:9380693-9380712 | None:intergenic | 15.0% |
!!! | AATAACATGATTTTAAATTG+CGG | - | chr4_2:9381304-9381323 | None:intergenic | 15.0% |
!! | AAATCAAGAAAAAAGAAATT+TGG | - | chr4_2:9381912-9381931 | None:intergenic | 15.0% |
!!! | TAGGTTTTAAAGATAATTTA+TGG | + | chr4_2:9382075-9382094 | Msa0587710:intron | 15.0% |
!! | AAAATAAATTGGTCATTATA+AGG | - | chr4_2:9382150-9382169 | None:intergenic | 15.0% |
!! | TCACATATTATTTCATTATT+AGG | - | chr4_2:9382242-9382261 | None:intergenic | 15.0% |
!!! | ATGTAATTTTGTAAAATAGG+AGG | + | chr4_2:9375369-9375388 | Msa0587710:intron | 20.0% |
!! | ATAAATGCTTAGAAGAAATT+TGG | + | chr4_2:9375398-9375417 | Msa0587710:intron | 20.0% |
!!! | AATTATGATCTTTCTAAAAG+TGG | - | chr4_2:9375546-9375565 | None:intergenic | 20.0% |
!!! | AAAATTGATTCTGACATATT+TGG | + | chr4_2:9375580-9375599 | Msa0587710:intron | 20.0% |
!! | AAAGAGATTGCTTATAATAT+AGG | + | chr4_2:9375882-9375901 | Msa0587710:intron | 20.0% |
!! | AAGAGATTGCTTATAATATA+GGG | + | chr4_2:9375883-9375902 | Msa0587710:intron | 20.0% |
!! | CTTGGTAAAATATATACTAT+AGG | - | chr4_2:9375939-9375958 | None:intergenic | 20.0% |
!! | TGTTACATTAATATTATTGC+TGG | + | chr4_2:9376048-9376067 | Msa0587710:intron | 20.0% |
!!! | TAAGATATAGTTTCATTTTC+AGG | + | chr4_2:9376124-9376143 | Msa0587710:intron | 20.0% |
!! | AAATCTATCAAGATGAAAAT+TGG | - | chr4_2:9376624-9376643 | None:intergenic | 20.0% |
!! | AATTAGAATTATACATCTAG+AGG | - | chr4_2:9376705-9376724 | None:intergenic | 20.0% |
!!! | TTTAGTTTCTTTTGCTATTA+AGG | + | chr4_2:9377024-9377043 | Msa0587710:intron | 20.0% |
!!! | TTAGTTTCTTTTGCTATTAA+GGG | + | chr4_2:9377025-9377044 | Msa0587710:intron | 20.0% |
!! | ACGGATGAAAATATTTAAAA+TGG | + | chr4_2:9377319-9377338 | Msa0587710:intron | 20.0% |
!!! | TTGTTTATTTTGTTCATAGA+TGG | + | chr4_2:9377433-9377452 | Msa0587710:intron | 20.0% |
!! | AACATTTGTGACTTATTTAA+AGG | + | chr4_2:9377718-9377737 | Msa0587710:intron | 20.0% |
!! | AAAGTTTACTAAAATTATGC+AGG | + | chr4_2:9378462-9378481 | Msa0587710:intron | 20.0% |
!! | AAGTTTACTAAAATTATGCA+GGG | + | chr4_2:9378463-9378482 | Msa0587710:intron | 20.0% |
!!! | ATTATGATAAATTTGAGTTG+AGG | + | chr4_2:9378657-9378676 | Msa0587710:intron | 20.0% |
!! | CTATTTAATACAAATGTCTT+TGG | + | chr4_2:9378717-9378736 | Msa0587710:intron | 20.0% |
!!! | AGTTGTTAAAAGTATATATG+AGG | + | chr4_2:9378883-9378902 | Msa0587710:intron | 20.0% |
!! | CTTTCTAATAGTATTTACAA+AGG | - | chr4_2:9379490-9379509 | None:intergenic | 20.0% |
!! | ATTATGAATCTCATTATTAG+TGG | + | chr4_2:9379517-9379536 | Msa0587710:intron | 20.0% |
!! | TTTGAAAAAAGATCTTAGTT+TGG | + | chr4_2:9379722-9379741 | Msa0587710:intron | 20.0% |
!! | AATGCTTTACAAAAGATTAT+GGG | - | chr4_2:9379923-9379942 | None:intergenic | 20.0% |
!! | TAATGCTTTACAAAAGATTA+TGG | - | chr4_2:9379924-9379943 | None:intergenic | 20.0% |
!! | CAAATAGTAAAGTTATGTAT+CGG | + | chr4_2:9380472-9380491 | Msa0587710:intron | 20.0% |
!! | AATAAGTAACTTTAGATTGA+AGG | - | chr4_2:9380612-9380631 | None:intergenic | 20.0% |
!!! | TTCAATCTAAAGTTACTTAT+TGG | + | chr4_2:9380611-9380630 | Msa0587710:intron | 20.0% |
!! | CACCCATAATTATTTAAAAA+AGG | + | chr4_2:9380687-9380706 | Msa0587710:intron | 20.0% |
!! | AGATATCGGTAATATTAATT+TGG | + | chr4_2:9381707-9381726 | Msa0587710:intron | 20.0% |
!!! | ATTTGCTGAAAAAAAAGTAA+AGG | - | chr4_2:9381747-9381766 | None:intergenic | 20.0% |
!!! | TTTACTTTTTTTTCAGCAAA+TGG | + | chr4_2:9381746-9381765 | Msa0587710:intron | 20.0% |
!!! | AAAAGAAATTTGGTAATCTT+TGG | - | chr4_2:9381902-9381921 | None:intergenic | 20.0% |
!! | TTAAAGAAACAATTTATGAC+AGG | + | chr4_2:9382010-9382029 | Msa0587710:intron | 20.0% |
!!! | ATTATCTTTAAAACCTATTC+CGG | - | chr4_2:9382072-9382091 | None:intergenic | 20.0% |
!!! | TATGTGATAAGTGTTTTATT+AGG | + | chr4_2:9382106-9382125 | Msa0587710:intron | 20.0% |
!!! | TTTTTTTCTAGAGATAGAAA+CGG | - | chr4_2:9382320-9382339 | None:intergenic | 20.0% |
! | TGATATCATTCTTACTTGTT+TGG | - | chr4_2:9375151-9375170 | None:intergenic | 25.0% |
!! | TGATCCATTTAAAACTGAAA+CGG | + | chr4_2:9375339-9375358 | Msa0587710:intron | 25.0% |
! | ATACATAAAATAAACGGTGA+CGG | + | chr4_2:9375842-9375861 | Msa0587710:intron | 25.0% |
! | AGAGATTGCTTATAATATAG+GGG | + | chr4_2:9375884-9375903 | Msa0587710:intron | 25.0% |
! | AAAATGCTATACTATAAGCA+AGG | - | chr4_2:9375916-9375935 | None:intergenic | 25.0% |
! | TTATTGCTGGAAAATATGAT+TGG | + | chr4_2:9376061-9376080 | Msa0587710:intron | 25.0% |
!!! | TGCTTTATTTATGCTTGAAA+TGG | + | chr4_2:9376152-9376171 | Msa0587710:CDS | 25.0% |
!! | TGGTTAAAATCACCTTTTAA+GGG | + | chr4_2:9376177-9376196 | Msa0587710:CDS | 25.0% |
! | CACAATGTTATAAAGATGAT+TGG | + | chr4_2:9376226-9376245 | Msa0587710:CDS | 25.0% |
!!! | TTTTGTTGATGATAGGATAT+TGG | + | chr4_2:9376348-9376367 | Msa0587710:intron | 25.0% |
!!! | TTTTTTTTTTTGCGCAAACT+AGG | + | chr4_2:9376483-9376502 | Msa0587710:intron | 25.0% |
! | AATTCTAATTAAAGATGAGG+CGG | + | chr4_2:9376715-9376734 | Msa0587710:intron | 25.0% |
! | AACAAAGCAAAAGAAACTAA+AGG | - | chr4_2:9376990-9377009 | None:intergenic | 25.0% |
!! | CAAAACAAGTTGTTGTTATT+TGG | - | chr4_2:9377246-9377265 | None:intergenic | 25.0% |
! | GGAATCATACATTCAATTAT+TGG | + | chr4_2:9377499-9377518 | Msa0587710:CDS | 25.0% |
! | ATCATACATTCAATTATTGG+AGG | + | chr4_2:9377502-9377521 | Msa0587710:CDS | 25.0% |
! | GTACAACTTTGCTAAAAATA+AGG | + | chr4_2:9377582-9377601 | Msa0587710:CDS | 25.0% |
! | AACTTTGCTAAAAATAAGGA+TGG | + | chr4_2:9377586-9377605 | Msa0587710:CDS | 25.0% |
! | TGGTGAAAATCAGTATATAT+AGG | - | chr4_2:9377780-9377799 | None:intergenic | 25.0% |
!!! | CATAACGGATAAAATACTAA+TGG | - | chr4_2:9377800-9377819 | None:intergenic | 25.0% |
! | TCTAACATGTACAAACAAAA+TGG | - | chr4_2:9378063-9378082 | None:intergenic | 25.0% |
! | AAATAAAACGCTCTACATAT+GGG | - | chr4_2:9378091-9378110 | None:intergenic | 25.0% |
!!! | GAAGTTGAGTTTTCATTTTT+AGG | - | chr4_2:9378511-9378530 | None:intergenic | 25.0% |
! | CTAGGTATTATATTCACATT+TGG | + | chr4_2:9378571-9378590 | Msa0587710:CDS | 25.0% |
! | ATATGAACACAAACAAGATA+CGG | - | chr4_2:9378852-9378871 | None:intergenic | 25.0% |
! | TGAGGAATATTTATATGACA+TGG | + | chr4_2:9378901-9378920 | Msa0587710:intron | 25.0% |
!!! | TATGACATGGTCTTATTTAT+TGG | + | chr4_2:9378914-9378933 | Msa0587710:intron | 25.0% |
! | TAAGTTAGATTATCCAAACA+AGG | - | chr4_2:9379132-9379151 | None:intergenic | 25.0% |
! | TGTTTGGATAATCTAACTTA+TGG | + | chr4_2:9379132-9379151 | Msa0587710:intron | 25.0% |
! | ATGGAGAAATTAGATAAAAG+AGG | + | chr4_2:9379151-9379170 | Msa0587710:intron | 25.0% |
! | ACTGCAACAAATATAACTTA+GGG | - | chr4_2:9379235-9379254 | None:intergenic | 25.0% |
! | AACTGCAACAAATATAACTT+AGG | - | chr4_2:9379236-9379255 | None:intergenic | 25.0% |
! | AAAGCAGCAAAAATATATGT+TGG | - | chr4_2:9379310-9379329 | None:intergenic | 25.0% |
! | CATTATGACATATTCTTACT+AGG | + | chr4_2:9379433-9379452 | Msa0587710:CDS | 25.0% |
!!! | AAAAACCTAATGCTTTGTTT+TGG | + | chr4_2:9379541-9379560 | Msa0587710:intron | 25.0% |
!!! | TATAAGTATTGCATTTTGCA+CGG | + | chr4_2:9379876-9379895 | Msa0587710:intron | 25.0% |
!! | TAAATGGGATACTTTTGATA+AGG | + | chr4_2:9380251-9380270 | Msa0587710:intron | 25.0% |
!!! | TTTCTTTTTTATGCTTTCCT+TGG | - | chr4_2:9380323-9380342 | None:intergenic | 25.0% |
! | CTATTATAAGACTTACAACT+GGG | - | chr4_2:9380405-9380424 | None:intergenic | 25.0% |
! | ACTATTATAAGACTTACAAC+TGG | - | chr4_2:9380406-9380425 | None:intergenic | 25.0% |
! | TTAAATAATTATGGGTGATG+TGG | - | chr4_2:9380684-9380703 | None:intergenic | 25.0% |
! | CTAAAACTTTAGATTGAAGA+CGG | - | chr4_2:9380763-9380782 | None:intergenic | 25.0% |
! | ATTTCATTTCCTCATCAATT+TGG | + | chr4_2:9381163-9381182 | Msa0587710:intron | 25.0% |
! | TTTCATTTCCTCATCAATTT+GGG | + | chr4_2:9381164-9381183 | Msa0587710:intron | 25.0% |
!!! | TAAAATCATGTTATTTTGGC+AGG | + | chr4_2:9381309-9381328 | Msa0587710:intron | 25.0% |
! | TTAGAATTGAGATCAAATAG+TGG | - | chr4_2:9381626-9381645 | None:intergenic | 25.0% |
! | ATTCTCACAAGTATTTATGT+CGG | - | chr4_2:9381978-9381997 | None:intergenic | 25.0% |
!! | TATTAGGTTGTTTATCCAAA+TGG | + | chr4_2:9382122-9382141 | Msa0587710:intron | 25.0% |
ATGGTATATGATACTACCAT+TGG | + | chr4_2:9375073-9375092 | Msa0587710:CDS | 30.0% | |
TGGTATATGATACTACCATT+GGG | + | chr4_2:9375074-9375093 | Msa0587710:CDS | 30.0% | |
! | AACATTTGTTAAAAGAGTGG+AGG | - | chr4_2:9375190-9375209 | None:intergenic | 30.0% |
! | TCCACTCTTTTAACAAATGT+TGG | + | chr4_2:9375189-9375208 | Msa0587710:intron | 30.0% |
! | TCCAACATTTGTTAAAAGAG+TGG | - | chr4_2:9375193-9375212 | None:intergenic | 30.0% |
!!! | TGTTCCGTTTCAGTTTTAAA+TGG | - | chr4_2:9375346-9375365 | None:intergenic | 30.0% |
TGCTTAGAAGAAATTTGGAA+AGG | + | chr4_2:9375403-9375422 | Msa0587710:intron | 30.0% | |
AACAAATAAAGAGAGATGCA+GGG | + | chr4_2:9375439-9375458 | Msa0587710:intron | 30.0% | |
ATTGACTAGATCAACAACTA+AGG | + | chr4_2:9376022-9376041 | Msa0587710:intron | 30.0% | |
TATTTATGCTTGAAATGGAG+TGG | + | chr4_2:9376157-9376176 | Msa0587710:CDS | 30.0% | |
! | GTGGTTAAAATCACCTTTTA+AGG | + | chr4_2:9376176-9376195 | Msa0587710:CDS | 30.0% |
!! | TCACCTTTTAAGGGAATTAT+AGG | + | chr4_2:9376186-9376205 | Msa0587710:CDS | 30.0% |
TCACCTATAATTCCCTTAAA+AGG | - | chr4_2:9376192-9376211 | None:intergenic | 30.0% | |
GGAATTATAGGTGATATAAG+AGG | + | chr4_2:9376198-9376217 | Msa0587710:CDS | 30.0% | |
GCAAAGAAAATATAGGTAGT+TGG | - | chr4_2:9376376-9376395 | None:intergenic | 30.0% | |
AGCAGAAGCAAAGAAAATAT+AGG | - | chr4_2:9376383-9376402 | None:intergenic | 30.0% | |
TTCTTCTTCTTCTTGTTCTT+TGG | + | chr4_2:9376450-9376469 | Msa0587710:intron | 30.0% | |
! | CTTATGAAGAGTTTGTTTGA+GGG | - | chr4_2:9376541-9376560 | None:intergenic | 30.0% |
! | TCTTATGAAGAGTTTGTTTG+AGG | - | chr4_2:9376542-9376561 | None:intergenic | 30.0% |
TCTATCAAGATGAAAATTGG+TGG | - | chr4_2:9376621-9376640 | None:intergenic | 30.0% | |
! | GAGATTCTGAAAATTTGAGA+TGG | + | chr4_2:9376845-9376864 | Msa0587710:intron | 30.0% |
TGAATGTATGATTCCACAAA+TGG | - | chr4_2:9377494-9377513 | None:intergenic | 30.0% | |
TTTAGCAAAGTTGTACAAGT+AGG | - | chr4_2:9377578-9377597 | None:intergenic | 30.0% | |
!!! | ACAAGAACTTTTTTTGGCTT+GGG | + | chr4_2:9377615-9377634 | Msa0587710:CDS | 30.0% |
! | GTATTTTATCCGTTATGCTA+AGG | + | chr4_2:9377803-9377822 | Msa0587710:intron | 30.0% |
TCTTGTATAAAAACAGGGTA+AGG | - | chr4_2:9377917-9377936 | None:intergenic | 30.0% | |
CAGTCTCTTGTATAAAAACA+GGG | - | chr4_2:9377922-9377941 | None:intergenic | 30.0% | |
ACAGTCTCTTGTATAAAAAC+AGG | - | chr4_2:9377923-9377942 | None:intergenic | 30.0% | |
TTTATACAAGAGACTGTTTC+CGG | + | chr4_2:9377926-9377945 | Msa0587710:intron | 30.0% | |
AAATCGTGATTGAAAGGTTA+CGG | - | chr4_2:9377961-9377980 | None:intergenic | 30.0% | |
CAAATAAAACGCTCTACATA+TGG | - | chr4_2:9378092-9378111 | None:intergenic | 30.0% | |
TTAAGTGCTTATAACACAAG+AGG | + | chr4_2:9378149-9378168 | Msa0587710:intron | 30.0% | |
ATATCGTCAACAGATTTACT+AGG | + | chr4_2:9378299-9378318 | Msa0587710:CDS | 30.0% | |
TATCGTCAACAGATTTACTA+GGG | + | chr4_2:9378300-9378319 | Msa0587710:CDS | 30.0% | |
CTTTATGTGAATGGTTTACT+AGG | + | chr4_2:9378553-9378572 | Msa0587710:CDS | 30.0% | |
!! | CATGGTCTTATTTATTGGAT+AGG | + | chr4_2:9378919-9378938 | Msa0587710:intron | 30.0% |
!! | GTCTTATTTATTGGATAGGT+TGG | + | chr4_2:9378923-9378942 | Msa0587710:intron | 30.0% |
!!! | ATTTCAGAAGGTATTTTGCT+TGG | - | chr4_2:9379021-9379040 | None:intergenic | 30.0% |
AATCTACATCTTTACACCAT+TGG | + | chr4_2:9379073-9379092 | Msa0587710:CDS | 30.0% | |
! | TTACTTTGATAACTGTCCAA+TGG | - | chr4_2:9379092-9379111 | None:intergenic | 30.0% |
! | AGTTATATTTGTTGCAGTTG+TGG | + | chr4_2:9379237-9379256 | Msa0587710:intron | 30.0% |
! | GTTATATTTGTTGCAGTTGT+GGG | + | chr4_2:9379238-9379257 | Msa0587710:intron | 30.0% |
! | TTATATTTGTTGCAGTTGTG+GGG | + | chr4_2:9379239-9379258 | Msa0587710:intron | 30.0% |
ATGTCATAATGATATGCAGA+AGG | - | chr4_2:9379424-9379443 | None:intergenic | 30.0% | |
CATATTCTTACTAGGATTTG+TGG | + | chr4_2:9379441-9379460 | Msa0587710:CDS | 30.0% | |
! | TTTGTAAAGCATTAGAGAGA+AGG | + | chr4_2:9379930-9379949 | Msa0587710:intron | 30.0% |
TTATAGAAAAGATGCGAGTT+TGG | + | chr4_2:9379953-9379972 | Msa0587710:intron | 30.0% | |
ACAACATAATGCAACTATGA+TGG | - | chr4_2:9379985-9380004 | None:intergenic | 30.0% | |
!! | AATACATGAGGTTTGTTACA+TGG | - | chr4_2:9380049-9380068 | None:intergenic | 30.0% |
!! | TAGCTTATTTTTCCCAAACA+TGG | + | chr4_2:9380790-9380809 | Msa0587710:intron | 30.0% |
TCTGAAAGTTAACCATGTTT+GGG | - | chr4_2:9380805-9380824 | None:intergenic | 30.0% | |
!!! | CTTTTAGGATTACCTCTTTT+AGG | - | chr4_2:9380853-9380872 | None:intergenic | 30.0% |
CTAAAAGAGGTAATCCTAAA+AGG | + | chr4_2:9380851-9380870 | Msa0587710:CDS | 30.0% | |
ATCCTAAAAGGTGAAGATAA+AGG | + | chr4_2:9380863-9380882 | Msa0587710:CDS | 30.0% | |
! | CTTTTACAATCACTCTTTGT+TGG | + | chr4_2:9380968-9380987 | Msa0587710:CDS | 30.0% |
! | AATTTTCTTAATGACAGGCA+TGG | - | chr4_2:9381008-9381027 | None:intergenic | 30.0% |
! | GTTGGAATTTTCTTAATGAC+AGG | - | chr4_2:9381013-9381032 | None:intergenic | 30.0% |
! | AAATTCCAACTTCTGTTTTG+TGG | + | chr4_2:9381023-9381042 | Msa0587710:CDS | 30.0% |
! | AATTCCAACTTCTGTTTTGT+GGG | + | chr4_2:9381024-9381043 | Msa0587710:CDS | 30.0% |
! | ATGATTTTAAATTGCGGTTG+TGG | - | chr4_2:9381298-9381317 | None:intergenic | 30.0% |
!!! | ATGTTATTTTGGCAGGTTAT+TGG | + | chr4_2:9381316-9381335 | Msa0587710:intron | 30.0% |
AAGAAGGCTATGTATCTAAT+TGG | - | chr4_2:9381374-9381393 | None:intergenic | 30.0% | |
ACATTGGAAAATTGTGAAGA+AGG | - | chr4_2:9381390-9381409 | None:intergenic | 30.0% | |
! | TTTCCAATGTGTCTATTTCT+TGG | + | chr4_2:9381400-9381419 | Msa0587710:CDS | 30.0% |
AAACCAAGAAATAGACACAT+TGG | - | chr4_2:9381406-9381425 | None:intergenic | 30.0% | |
!!! | GTCTATTTCTTGGTTTGTTT+TGG | + | chr4_2:9381410-9381429 | Msa0587710:CDS | 30.0% |
ATCAGTAAAAAGAATGGCAA+GGG | - | chr4_2:9381470-9381489 | None:intergenic | 30.0% | |
ACCAAGATCAGTAAAAAGAA+TGG | - | chr4_2:9381476-9381495 | None:intergenic | 30.0% | |
TTGAGATCAAATAGTGGTAT+AGG | - | chr4_2:9381620-9381639 | None:intergenic | 30.0% | |
! | TCTTATTTCCATAAACTCTC+CGG | + | chr4_2:9382050-9382069 | Msa0587710:intron | 30.0% |
AATCATCAAATAGCTAGCTA+AGG | + | chr4_2:9382267-9382286 | Msa0587710:exon | 30.0% | |
ATTTGGAAAGGAAACAACAG+AGG | + | chr4_2:9375415-9375434 | Msa0587710:intron | 35.0% | |
TTTGGAAAGGAAACAACAGA+GGG | + | chr4_2:9375416-9375435 | Msa0587710:intron | 35.0% | |
GAACAAATAAAGAGAGATGC+AGG | + | chr4_2:9375438-9375457 | Msa0587710:intron | 35.0% | |
ACAAATAAAGAGAGATGCAG+GGG | + | chr4_2:9375440-9375459 | Msa0587710:intron | 35.0% | |
TGAGTACAATGAGTAGTACT+TGG | - | chr4_2:9375957-9375976 | None:intergenic | 35.0% | |
!!! | CTTGCACTTTTGTTGATGAT+AGG | + | chr4_2:9376341-9376360 | Msa0587710:intron | 35.0% |
! | ATTGGTGGTCAAACATCTAA+AGG | - | chr4_2:9376606-9376625 | None:intergenic | 35.0% |
! | GATGTTTGACCTCCAATTTT+TGG | + | chr4_2:9376644-9376663 | Msa0587710:intron | 35.0% |
ATATGTGGTGGTCCAAAAAT+TGG | - | chr4_2:9376659-9376678 | None:intergenic | 35.0% | |
!! | TGTGAGAATTTAGCTTGATG+TGG | - | chr4_2:9376757-9376776 | None:intergenic | 35.0% |
! | CTGAAAATTTGAGATGGAGA+AGG | + | chr4_2:9376851-9376870 | Msa0587710:intron | 35.0% |
!! | TAGGTATACATGATGATGGT+GGG | - | chr4_2:9377559-9377578 | None:intergenic | 35.0% |
CAAGTAGGTATACATGATGA+TGG | - | chr4_2:9377563-9377582 | None:intergenic | 35.0% | |
TGCTAAAAATAAGGATGGCT+TGG | + | chr4_2:9377591-9377610 | Msa0587710:CDS | 35.0% | |
GCTAAAAATAAGGATGGCTT+GGG | + | chr4_2:9377592-9377611 | Msa0587710:CDS | 35.0% | |
!!! | CTTGGGACAAGAACTTTTTT+TGG | + | chr4_2:9377609-9377628 | Msa0587710:CDS | 35.0% |
!!! | GACAAGAACTTTTTTTGGCT+TGG | + | chr4_2:9377614-9377633 | Msa0587710:CDS | 35.0% |
TAGGGATAACCTTAGCATAA+CGG | - | chr4_2:9377815-9377834 | None:intergenic | 35.0% | |
ATGCTAAGGTTATCCCTAAA+AGG | + | chr4_2:9377817-9377836 | Msa0587710:intron | 35.0% | |
! | TGCACTAAGTTGTCCTTTTA+GGG | - | chr4_2:9377833-9377852 | None:intergenic | 35.0% |
TTATACAAGAGACTGTTTCC+GGG | + | chr4_2:9377927-9377946 | Msa0587710:intron | 35.0% | |
AATCGTGATTGAAAGGTTAC+GGG | - | chr4_2:9377960-9377979 | None:intergenic | 35.0% | |
TGGTGAAAATCGTGATTGAA+AGG | - | chr4_2:9377967-9377986 | None:intergenic | 35.0% | |
GTGAAAAAGACATATGTGCA+TGG | + | chr4_2:9378030-9378049 | Msa0587710:intron | 35.0% | |
AATTTCTCAGGGTTTGTGTA+TGG | + | chr4_2:9378233-9378252 | Msa0587710:intron | 35.0% | |
CTCCTAGCGATATTTAATGT+TGG | + | chr4_2:9378274-9378293 | Msa0587710:CDS | 35.0% | |
TGCCAACATTAAATATCGCT+AGG | - | chr4_2:9378279-9378298 | None:intergenic | 35.0% | |
!! | TTCAGTCTTGTTCATTCAAG+AGG | + | chr4_2:9378351-9378370 | Msa0587710:CDS | 35.0% |
CAGAACAATACCAATTTCAC+TGG | + | chr4_2:9378530-9378549 | Msa0587710:CDS | 35.0% | |
TCACATAAAGCCAGTGAAAT+TGG | - | chr4_2:9378543-9378562 | None:intergenic | 35.0% | |
!! | TTTCACTGGCTTTATGTGAA+TGG | + | chr4_2:9378544-9378563 | Msa0587710:CDS | 35.0% |
TCTTCAATGCTGTATAGAGA+AGG | - | chr4_2:9378597-9378616 | None:intergenic | 35.0% | |
AGAGCAAGATCTTGGTTATA+TGG | + | chr4_2:9378622-9378641 | Msa0587710:CDS | 35.0% | |
GAGCAAGATCTTGGTTATAT+GGG | + | chr4_2:9378623-9378642 | Msa0587710:CDS | 35.0% | |
!! | AGAAGCTTTATTGCAGACTA+TGG | + | chr4_2:9378949-9378968 | Msa0587710:CDS | 35.0% |
AGTCTTCTTGGAATTTCAGA+AGG | - | chr4_2:9379033-9379052 | None:intergenic | 35.0% | |
!! | TGTTGAACTAAAGCCTTGTT+TGG | + | chr4_2:9379116-9379135 | Msa0587710:intron | 35.0% |
TTGACTTCAATTTATGCTGC+AGG | + | chr4_2:9379267-9379286 | Msa0587710:intron | 35.0% | |
! | GTTTGCCAAAACAAAGCATT+AGG | - | chr4_2:9379549-9379568 | None:intergenic | 35.0% |
!! | ACGTTACAGACTTTGATTTG+TGG | + | chr4_2:9379569-9379588 | Msa0587710:intron | 35.0% |
!! | ACTTTGATTTGTGGACTACT+TGG | + | chr4_2:9379578-9379597 | Msa0587710:CDS | 35.0% |
TTAGTATGCATAGGAGATTG+AGG | - | chr4_2:9379629-9379648 | None:intergenic | 35.0% | |
! | AGCGTCTATTTTCACTATGT+GGG | - | chr4_2:9379811-9379830 | None:intergenic | 35.0% |
GTAGATGATCAGAAGAAAGA+TGG | + | chr4_2:9380288-9380307 | Msa0587710:intron | 35.0% | |
ACACAACACTAACACACTAT+CGG | + | chr4_2:9380521-9380540 | Msa0587710:intron | 35.0% | |
GTCTGAAAGTTAACCATGTT+TGG | - | chr4_2:9380806-9380825 | None:intergenic | 35.0% | |
! | CTCCTTTATCTTCACCTTTT+AGG | - | chr4_2:9380868-9380887 | None:intergenic | 35.0% |
CTTTGCTCATTTACTCTAAC+AGG | - | chr4_2:9380938-9380957 | None:intergenic | 35.0% | |
! | ATTCCAACTTCTGTTTTGTG+GGG | + | chr4_2:9381025-9381044 | Msa0587710:CDS | 35.0% |
ATTACCAGGAAGACTATCAA+TGG | - | chr4_2:9381068-9381087 | None:intergenic | 35.0% | |
TCTTCCTGGTAATCAATTCT+GGG | + | chr4_2:9381075-9381094 | Msa0587710:CDS | 35.0% | |
TTCTCTTTGTATCACCTAGT+AGG | + | chr4_2:9381110-9381129 | Msa0587710:CDS | 35.0% | |
TATAACAGTCTGGTACAGTT+CGG | - | chr4_2:9381220-9381239 | None:intergenic | 35.0% | |
ACTGTACCAGACTGTTATAA+TGG | + | chr4_2:9381221-9381240 | Msa0587710:intron | 35.0% | |
ACTGAACCATTATAACAGTC+TGG | - | chr4_2:9381230-9381249 | None:intergenic | 35.0% | |
AGTTACAACTGTTCTTGGTT+CGG | - | chr4_2:9381271-9381290 | None:intergenic | 35.0% | |
!!! | TTATTTTGGCAGGTTATTGG+AGG | + | chr4_2:9381319-9381338 | Msa0587710:intron | 35.0% |
!!! | TATTTTGGCAGGTTATTGGA+GGG | + | chr4_2:9381320-9381339 | Msa0587710:intron | 35.0% |
AATTGGTACTGTTTCCACAA+AGG | - | chr4_2:9381357-9381376 | None:intergenic | 35.0% | |
GATCAGTAAAAAGAATGGCA+AGG | - | chr4_2:9381471-9381490 | None:intergenic | 35.0% | |
! | GCCATTCTTTTTACTGATCT+TGG | + | chr4_2:9381472-9381491 | Msa0587710:CDS | 35.0% |
! | TCTTTTTACTGATCTTGGTG+AGG | + | chr4_2:9381477-9381496 | Msa0587710:CDS | 35.0% |
!! | TCTAGTTCTTTAAGATGGTG+AGG | - | chr4_2:9381530-9381549 | None:intergenic | 35.0% |
!! | CTGCATCTAGTTCTTTAAGA+TGG | - | chr4_2:9381535-9381554 | None:intergenic | 35.0% |
GCTGAATATGAAGAAATTGC+TGG | + | chr4_2:9381554-9381573 | Msa0587710:CDS | 35.0% | |
CATACACTTAAAGAGAGTCT+TGG | - | chr4_2:9381584-9381603 | None:intergenic | 35.0% | |
ATTTCCATTGATCCAAAGCT+AGG | - | chr4_2:9381777-9381796 | None:intergenic | 35.0% | |
GATGAATTAACTACAAGCAG+AGG | + | chr4_2:9381816-9381835 | Msa0587710:CDS | 35.0% | |
GGTCATTATAAGGTTCCATT+TGG | - | chr4_2:9382140-9382159 | None:intergenic | 35.0% | |
AATGATTTCCATTGCATGCA+GGG | + | chr4_2:9382209-9382228 | Msa0587710:intron | 35.0% | |
CTAAGGACTTGGAGAAAATA+TGG | + | chr4_2:9382284-9382303 | Msa0587710:three_prime_UTR | 35.0% | |
CTTGGAGAAAATATGGTAAG+TGG | + | chr4_2:9382291-9382310 | Msa0587710:three_prime_UTR | 35.0% | |
AAAGAGAAAGCTATCAACCA+AGG | + | chr4_2:9382339-9382358 | Msa0587710:three_prime_UTR | 35.0% | |
TGTGTGTTTGATTGTGCGTT+GGG | - | chr4_2:9375659-9375678 | None:intergenic | 40.0% | |
! | ACTTATTTCTCGTCGAACAC+TGG | + | chr4_2:9375710-9375729 | Msa0587710:intron | 40.0% |
AAACCTACCCAATACCAGAA+CGG | - | chr4_2:9376263-9376282 | None:intergenic | 40.0% | |
GCTTTACCTGTTATTGCCTT+TGG | + | chr4_2:9376400-9376419 | Msa0587710:CDS | 40.0% | |
! | TAGAGGTGAAGTGTATTGGT+GGG | - | chr4_2:9376688-9376707 | None:intergenic | 40.0% |
CATCTAGAGGTGAAGTGTAT+TGG | - | chr4_2:9376692-9376711 | None:intergenic | 40.0% | |
ATTGAGCACAGTAGAAACAC+TGG | + | chr4_2:9377459-9377478 | Msa0587710:CDS | 40.0% | |
!! | GTAGGTATACATGATGATGG+TGG | - | chr4_2:9377560-9377579 | None:intergenic | 40.0% |
! | GTGCACTAAGTTGTCCTTTT+AGG | - | chr4_2:9377834-9377853 | None:intergenic | 40.0% |
! | AGGGTTGCTGAAGAACTTTT+TGG | + | chr4_2:9378319-9378338 | Msa0587710:CDS | 40.0% |
GTTCATTCAAGAGGCCATTA+AGG | + | chr4_2:9378360-9378379 | Msa0587710:CDS | 40.0% | |
!! | CACATACTGACTCACCTTAA+TGG | - | chr4_2:9378377-9378396 | None:intergenic | 40.0% |
AGATCTTGGTTATATGGGAC+AGG | + | chr4_2:9378628-9378647 | Msa0587710:CDS | 40.0% | |
TCAATTTATGCTGCAGGACA+TGG | + | chr4_2:9379273-9379292 | Msa0587710:intron | 40.0% | |
CAATTTATGCTGCAGGACAT+GGG | + | chr4_2:9379274-9379293 | Msa0587710:intron | 40.0% | |
! | TGCTTTTATTCCTGCCTTGA+TGG | + | chr4_2:9379324-9379343 | Msa0587710:CDS | 40.0% |
CTTTGATCATAGCGTTGCTT+CGG | + | chr4_2:9379363-9379382 | Msa0587710:CDS | 40.0% | |
TTTGATCATAGCGTTGCTTC+GGG | + | chr4_2:9379364-9379383 | Msa0587710:CDS | 40.0% | |
TGAGGAAGAACACCATTTGA+AGG | - | chr4_2:9379611-9379630 | None:intergenic | 40.0% | |
ACTATGTGGGATCAGTTACA+TGG | - | chr4_2:9379798-9379817 | None:intergenic | 40.0% | |
! | CAGCGTCTATTTTCACTATG+TGG | - | chr4_2:9379812-9379831 | None:intergenic | 40.0% |
TGCACGGTAGAAAACTTTAG+AGG | + | chr4_2:9379892-9379911 | Msa0587710:intron | 40.0% | |
GCACGGTAGAAAACTTTAGA+GGG | + | chr4_2:9379893-9379912 | Msa0587710:intron | 40.0% | |
!! | AAAGATGGTTGAAAGTGCCA+AGG | + | chr4_2:9380303-9380322 | Msa0587710:CDS | 40.0% |
!! | GCTAGCAACTCTGAAATCTA+TGG | + | chr4_2:9380343-9380362 | Msa0587710:CDS | 40.0% |
GCAAGCAGTGTTTGTAGAAA+TGG | + | chr4_2:9380372-9380391 | Msa0587710:CDS | 40.0% | |
GGTTAACTTTCAGACTTCTG+TGG | + | chr4_2:9380811-9380830 | Msa0587710:intron | 40.0% | |
ACTTTCAGACTTCTGTGGAA+AGG | + | chr4_2:9380816-9380835 | Msa0587710:intron | 40.0% | |
CTTTCAGACTTCTGTGGAAA+GGG | + | chr4_2:9380817-9380836 | Msa0587710:intron | 40.0% | |
GGAACTAGAGAACCTAAAAG+AGG | + | chr4_2:9380838-9380857 | Msa0587710:CDS | 40.0% | |
TATCCCCACAAAACAGAAGT+TGG | - | chr4_2:9381031-9381050 | None:intergenic | 40.0% | |
GTCTTCCTGGTAATCAATTC+TGG | + | chr4_2:9381074-9381093 | Msa0587710:CDS | 40.0% | |
CTTTCCCAGAATTGATTACC+AGG | - | chr4_2:9381082-9381101 | None:intergenic | 40.0% | |
! | CTGGTAATCAATTCTGGGAA+AGG | + | chr4_2:9381080-9381099 | Msa0587710:CDS | 40.0% |
TCTTTGTATCACCTAGTAGG+TGG | + | chr4_2:9381113-9381132 | Msa0587710:CDS | 40.0% | |
ACTTACTTGAACCACCTACT+AGG | - | chr4_2:9381127-9381146 | None:intergenic | 40.0% | |
TGGTTCATCCCAAATTGATG+AGG | - | chr4_2:9381175-9381194 | None:intergenic | 40.0% | |
GAACTGAACCAGACTGTTAA+TGG | - | chr4_2:9381195-9381214 | None:intergenic | 40.0% | |
GTTGCAGTTACAACTGTTCT+TGG | - | chr4_2:9381276-9381295 | None:intergenic | 40.0% | |
!!! | TGGTTTGTTTTGGAGTGACA+TGG | + | chr4_2:9381420-9381439 | Msa0587710:CDS | 40.0% |
GGAAACAAGATTCCAGCTAT+TGG | - | chr4_2:9381449-9381468 | None:intergenic | 40.0% | |
CGACACTGACATGTAGATAT+CGG | + | chr4_2:9381693-9381712 | Msa0587710:intron | 40.0% | |
! | CAAATGGATTCTCCTAGCTT+TGG | + | chr4_2:9381762-9381781 | Msa0587710:CDS | 40.0% |
!! | TTCTCCTAGCTTTGGATCAA+TGG | + | chr4_2:9381770-9381789 | Msa0587710:CDS | 40.0% |
CAGAACTTTAAGCTTCAGAG+AGG | + | chr4_2:9381851-9381870 | Msa0587710:CDS | 40.0% | |
GAAAGACATGGTCAAGTAAG+TGG | + | chr4_2:9381873-9381892 | Msa0587710:intron | 40.0% | |
TTCCATAAACTCTCCGGAAT+AGG | + | chr4_2:9382056-9382075 | Msa0587710:intron | 40.0% | |
AACCTATTCCGGAGAGTTTA+TGG | - | chr4_2:9382061-9382080 | None:intergenic | 40.0% | |
CAATGATTTCCATTGCATGC+AGG | + | chr4_2:9382208-9382227 | Msa0587710:intron | 40.0% | |
CAAATAGCTAGCTAAGGACT+TGG | + | chr4_2:9382273-9382292 | Msa0587710:exon | 40.0% | |
ATACTACCATTGGGCCTTCT+TGG | + | chr4_2:9375083-9375102 | Msa0587710:CDS | 45.0% | |
TACTACCATTGGGCCTTCTT+GGG | + | chr4_2:9375084-9375103 | Msa0587710:CDS | 45.0% | |
TCAACACCTTAGCGAAAGAG+CGG | + | chr4_2:9375125-9375144 | Msa0587710:CDS | 45.0% | |
AGGGGAGAAAGATGCAACAA+AGG | + | chr4_2:9375458-9375477 | Msa0587710:intron | 45.0% | |
GTGTGTGTTTGATTGTGCGT+TGG | - | chr4_2:9375660-9375679 | None:intergenic | 45.0% | |
TCGTCGAACACTGGAATATC+AGG | + | chr4_2:9375719-9375738 | Msa0587710:intron | 45.0% | |
AAGATTTGACCCGAACACGT+TGG | - | chr4_2:9375989-9376008 | None:intergenic | 45.0% | |
TGTGCTTTCCGTTCTGGTAT+TGG | + | chr4_2:9376252-9376271 | Msa0587710:CDS | 45.0% | |
GTGCTTTCCGTTCTGGTATT+GGG | + | chr4_2:9376253-9376272 | Msa0587710:CDS | 45.0% | |
! | TTTCCGTTCTGGTATTGGGT+AGG | + | chr4_2:9376257-9376276 | Msa0587710:intron | 45.0% |
TGCTCACCAAAGGCAATAAC+AGG | - | chr4_2:9376409-9376428 | None:intergenic | 45.0% | |
TGTGGTGGTCCAAAAATTGG+AGG | - | chr4_2:9376656-9376675 | None:intergenic | 45.0% | |
!! | ATTGGTGGGCTAGACATATG+TGG | - | chr4_2:9376674-9376693 | None:intergenic | 45.0% |
CTAGAGGTGAAGTGTATTGG+TGG | - | chr4_2:9376689-9376708 | None:intergenic | 45.0% | |
GTTCTGCAACTCCTACAATG+AGG | - | chr4_2:9377537-9377556 | None:intergenic | 45.0% | |
!!! | GAACTTTTTTTGGCTTGGGC+TGG | + | chr4_2:9377619-9377638 | Msa0587710:CDS | 45.0% |
!!! | TTTTTTTGGCTTGGGCTGGA+TGG | + | chr4_2:9377623-9377642 | Msa0587710:CDS | 45.0% |
CACTAAAACTCCGCATATGC+AGG | + | chr4_2:9377851-9377870 | Msa0587710:intron | 45.0% | |
AACTCCGCATATGCAGGATT+CGG | + | chr4_2:9377857-9377876 | Msa0587710:intron | 45.0% | |
CTTTCCGAATCCTGCATATG+CGG | - | chr4_2:9377864-9377883 | None:intergenic | 45.0% | |
GCATATGCAGGATTCGGAAA+GGG | + | chr4_2:9377863-9377882 | Msa0587710:intron | 45.0% | |
CATATGCAGGATTCGGAAAG+GGG | + | chr4_2:9377864-9377883 | Msa0587710:intron | 45.0% | |
AAACAGGGTAAGGCTGCATA+TGG | - | chr4_2:9377907-9377926 | None:intergenic | 45.0% | |
AGAGCAGAAGAGCAAGATCT+TGG | + | chr4_2:9378614-9378633 | Msa0587710:CDS | 45.0% | |
AGACTATGGTGTGCCTTTCT+TGG | + | chr4_2:9378963-9378982 | Msa0587710:CDS | 45.0% | |
! | TGCCTTTCTTGGTGGTAGTA+TGG | + | chr4_2:9378974-9378993 | Msa0587710:CDS | 45.0% |
GTCCATACTACCACCAAGAA+AGG | - | chr4_2:9378979-9378998 | None:intergenic | 45.0% | |
!! | AGAGGAGCAACTAGTCTTCT+TGG | - | chr4_2:9379045-9379064 | None:intergenic | 45.0% |
! | ACTAGTTGCTCCTCTAGCTT+GGG | + | chr4_2:9379050-9379069 | Msa0587710:CDS | 45.0% |
GATGTAGATTCCCAAGCTAG+AGG | - | chr4_2:9379063-9379082 | None:intergenic | 45.0% | |
TTGATCATAGCGTTGCTTCG+GGG | + | chr4_2:9379365-9379384 | Msa0587710:CDS | 45.0% | |
CTTGGCTTACCTCCTTCAAA+TGG | + | chr4_2:9379596-9379615 | Msa0587710:CDS | 45.0% | |
GGAAGAACACCATTTGAAGG+AGG | - | chr4_2:9379608-9379627 | None:intergenic | 45.0% | |
GAGAGGCTCTTAGTATGCAT+AGG | - | chr4_2:9379638-9379657 | None:intergenic | 45.0% | |
TAAGAGCCTCTCAGTTCTCA+AGG | + | chr4_2:9379646-9379665 | Msa0587710:CDS | 45.0% | |
AAGAGCCTCTCAGTTCTCAA+GGG | + | chr4_2:9379647-9379666 | Msa0587710:CDS | 45.0% | |
TGTCAACGTCTCTTTCAGAC+CGG | - | chr4_2:9380162-9380181 | None:intergenic | 45.0% | |
ACACACACACCACACATACA+CGG | + | chr4_2:9380647-9380666 | Msa0587710:intron | 45.0% | |
AATTATGGGTGATGTGGCAG+TGG | - | chr4_2:9380678-9380697 | None:intergenic | 45.0% | |
CAACACGACACTAACACATG+TGG | - | chr4_2:9380730-9380749 | None:intergenic | 45.0% | |
CACATGTGTTAGTGTCGTGT+TGG | + | chr4_2:9380728-9380747 | Msa0587710:intron | 45.0% | |
CATGCGTCAATATGCTTCTC+AGG | - | chr4_2:9380911-9380930 | None:intergenic | 45.0% | |
GTGGGGATACTTTGCATACA+TGG | + | chr4_2:9381042-9381061 | Msa0587710:CDS | 45.0% | |
! | ATGGCCATTGATAGTCTTCC+TGG | + | chr4_2:9381061-9381080 | Msa0587710:CDS | 45.0% |
GGGATGAACCATTAACAGTC+TGG | + | chr4_2:9381184-9381203 | Msa0587710:intron | 45.0% | |
GTGACATGGATTCCAATAGC+TGG | + | chr4_2:9381434-9381453 | Msa0587710:CDS | 45.0% | |
TGGTGAGGACTAAAGAGCTT+GGG | - | chr4_2:9381515-9381534 | None:intergenic | 45.0% | |
ATGGTGAGGACTAAAGAGCT+TGG | - | chr4_2:9381516-9381535 | None:intergenic | 45.0% | |
CTACATGTCAGTGTCGTGTT+CGG | - | chr4_2:9381689-9381708 | None:intergenic | 45.0% | |
AGCTTCAGAGAGGAAAGACA+TGG | + | chr4_2:9381861-9381880 | Msa0587710:CDS | 45.0% | |
GATAGATTCCCTGCATGCAA+TGG | - | chr4_2:9382220-9382239 | None:intergenic | 45.0% | |
!!! | AAAACTTTTTTTAAATATTA+CGG | - | chr4_2:9379844-9379863 | None:intergenic | 5.0% |
!! | TATTAATGATTAAATTAAAT+GGG | + | chr4_2:9380236-9380255 | Msa0587710:intron | 5.0% |
!!! | TTTTTATTTTTTAAAAAAGT+TGG | + | chr4_2:9382167-9382186 | Msa0587710:intron | 5.0% |
! | ACCTGTGTTGCTACCCAAGA+AGG | - | chr4_2:9375100-9375119 | None:intergenic | 50.0% |
ACACGCTACACCAACGTGTT+CGG | + | chr4_2:9375976-9375995 | Msa0587710:intron | 50.0% | |
GTGTTCGGGTCAAATCTTGC+TGG | + | chr4_2:9375991-9376010 | Msa0587710:intron | 50.0% | |
TGGACTTGTGCTTTCCGTTC+TGG | + | chr4_2:9376246-9376265 | Msa0587710:CDS | 50.0% | |
TCGATTCAGCTGCTCACCAA+AGG | - | chr4_2:9376419-9376438 | None:intergenic | 50.0% | |
ATCATCTCTGCGCGTAACTG+TGG | + | chr4_2:9376507-9376526 | Msa0587710:intron | 50.0% | |
CTGGCTTCTACAGCCATTTG+TGG | + | chr4_2:9377478-9377497 | Msa0587710:CDS | 50.0% | |
CTCCTACAATGAGGAGTGGT+TGG | - | chr4_2:9377528-9377547 | None:intergenic | 50.0% | |
GCAACTCCTACAATGAGGAG+TGG | - | chr4_2:9377532-9377551 | None:intergenic | 50.0% | |
CGCATATGCAGGATTCGGAA+AGG | + | chr4_2:9377862-9377881 | Msa0587710:intron | 50.0% | |
AAGGTTACGGGTTCAAGTCC+CGG | - | chr4_2:9377948-9377967 | None:intergenic | 50.0% | |
CGCTAGGAGAAACAGCAAGA+GGG | - | chr4_2:9378263-9378282 | None:intergenic | 50.0% | |
TCGCTAGGAGAAACAGCAAG+AGG | - | chr4_2:9378264-9378283 | None:intergenic | 50.0% | |
CTATGGTGTGCCTTTCTTGG+TGG | + | chr4_2:9378966-9378985 | Msa0587710:CDS | 50.0% | |
! | GACTAGTTGCTCCTCTAGCT+TGG | + | chr4_2:9379049-9379068 | Msa0587710:CDS | 50.0% |
TTATGCTGCAGGACATGGGA+AGG | + | chr4_2:9379278-9379297 | Msa0587710:intron | 50.0% | |
TATGCTGCAGGACATGGGAA+GGG | + | chr4_2:9379279-9379298 | Msa0587710:intron | 50.0% | |
! | ATTCCTGCCTTGATGGTAGC+AGG | + | chr4_2:9379331-9379350 | Msa0587710:CDS | 50.0% |
! | TTCCTGCCTTGATGGTAGCA+GGG | + | chr4_2:9379332-9379351 | Msa0587710:CDS | 50.0% |
GTAAAGCCCTGCTACCATCA+AGG | - | chr4_2:9379341-9379360 | None:intergenic | 50.0% | |
TCAGTTCTCAAGGGTCTGGT+AGG | + | chr4_2:9379656-9379675 | Msa0587710:intron | 50.0% | |
ATCATTATCCACCCTGCTGC+CGG | + | chr4_2:9380140-9380159 | Msa0587710:intron | 50.0% | |
TCGAGTGCAGCAACATGTGT+CGG | + | chr4_2:9380568-9380587 | Msa0587710:intron | 50.0% | |
GGGTCATCATGCTTCCTTTG+TGG | + | chr4_2:9381340-9381359 | Msa0587710:CDS | 50.0% | |
GGTGAGGACTAAAGAGCTTG+GGG | - | chr4_2:9381514-9381533 | None:intergenic | 50.0% | |
TGCTACCCAAGAAGGCCCAA+TGG | - | chr4_2:9375092-9375111 | None:intergenic | 55.0% | |
GCCTTCTTGGGTAGCAACAC+AGG | + | chr4_2:9375096-9375115 | Msa0587710:CDS | 55.0% | |
GTTTGGCCGCTCTTTCGCTA+AGG | - | chr4_2:9375134-9375153 | None:intergenic | 55.0% | |
CACGCTACACCAACGTGTTC+GGG | + | chr4_2:9375977-9375996 | Msa0587710:intron | 55.0% | |
GAGCAGCTGAATCGAGACAC+AGG | + | chr4_2:9376424-9376443 | Msa0587710:CDS | 55.0% | |
!! | GGTGGGCTAGACATATGTGG+TGG | - | chr4_2:9376671-9376690 | None:intergenic | 55.0% |
GGCCAACCACTCCTCATTGT+AGG | + | chr4_2:9377523-9377542 | Msa0587710:CDS | 55.0% | |
TCATAGCGTTGCTTCGGGGA+TGG | + | chr4_2:9379369-9379388 | Msa0587710:CDS | 55.0% | |
CCAGACCCTTGAGAACTGAG+AGG | - | chr4_2:9379655-9379674 | None:intergenic | 55.0% | |
CCTCTCAGTTCTCAAGGGTC+TGG | + | chr4_2:9379652-9379671 | Msa0587710:CDS | 55.0% | |
TCTCTTTCAGACCGGCAGCA+GGG | - | chr4_2:9380154-9380173 | None:intergenic | 55.0% | |
GTGGTTGTGCCGTGTATGTG+TGG | - | chr4_2:9380659-9380678 | None:intergenic | 55.0% | |
GAGGACTAAAGAGCTTGGGG+AGG | - | chr4_2:9381511-9381530 | None:intergenic | 55.0% | |
AGCCCTGCTACCATCAAGGC+AGG | - | chr4_2:9379337-9379356 | None:intergenic | 60.0% | |
TTCGGGGATGGCACAGCAGA+AGG | + | chr4_2:9379381-9379400 | Msa0587710:CDS | 60.0% | |
GTCTCTTTCAGACCGGCAGC+AGG | - | chr4_2:9380155-9380174 | None:intergenic | 60.0% | |
CTTTCAGACCGGCAGCAGGG+TGG | - | chr4_2:9380151-9380170 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 9375073 | 9382368 | 9375073 | ID=Msa0587710;Name=Msa0587710 |
chr4_2 | mRNA | 9375073 | 9382368 | 9375073 | ID=Msa0587710-mRNA-1;Parent=Msa0587710;Name=Msa0587710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.84|0.71|0.92|1|1|14|85|703 |
chr4_2 | exon | 9375073 | 9375155 | 9375073 | ID=Msa0587710-mRNA-1:exon:2543;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9376146 | 9376274 | 9376146 | ID=Msa0587710-mRNA-1:exon:2544;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9376363 | 9376445 | 9376363 | ID=Msa0587710-mRNA-1:exon:2545;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9377452 | 9377644 | 9377452 | ID=Msa0587710-mRNA-1:exon:2546;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9378243 | 9378381 | 9378243 | ID=Msa0587710-mRNA-1:exon:2547;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9378484 | 9378649 | 9378484 | ID=Msa0587710-mRNA-1:exon:2548;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9378941 | 9379107 | 9378941 | ID=Msa0587710-mRNA-1:exon:2549;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9379289 | 9379462 | 9379289 | ID=Msa0587710-mRNA-1:exon:2550;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9379578 | 9379673 | 9379578 | ID=Msa0587710-mRNA-1:exon:2551;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9380292 | 9380408 | 9380292 | ID=Msa0587710-mRNA-1:exon:2552;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9380824 | 9381140 | 9380824 | ID=Msa0587710-mRNA-1:exon:2553;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9381331 | 9381598 | 9381331 | ID=Msa0587710-mRNA-1:exon:2554;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9381762 | 9381887 | 9381762 | ID=Msa0587710-mRNA-1:exon:2555;Parent=Msa0587710-mRNA-1 |
chr4_2 | exon | 9382230 | 9382368 | 9382230 | ID=Msa0587710-mRNA-1:exon:2556;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9375073 | 9375155 | 9375073 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9376146 | 9376274 | 9376146 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9376363 | 9376445 | 9376363 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9377452 | 9377644 | 9377452 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9378243 | 9378381 | 9378243 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9378484 | 9378649 | 9378484 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9378941 | 9379107 | 9378941 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9379289 | 9379462 | 9379289 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9379578 | 9379673 | 9379578 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9380292 | 9380408 | 9380292 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9380824 | 9381140 | 9380824 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9381331 | 9381598 | 9381331 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9381762 | 9381887 | 9381762 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | CDS | 9382230 | 9382283 | 9382230 | ID=Msa0587710-mRNA-1:cds;Parent=Msa0587710-mRNA-1 |
chr4_2 | three_prime_UTR | 9382284 | 9382368 | 9382284 | ID=Msa0587710-mRNA-1:three_prime_utr;Parent=Msa0587710-mRNA-1 |
Gene Sequence |
Protein sequence |