Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449360 | XP_013459315.1 | 71.429 | 154 | 44 | 0 | 1 | 154 | 1 | 154 | 5.14e-74 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449360 | sp|P62929|ALB1D_PEA | 54.918 | 122 | 48 | 4 | 1 | 122 | 1 | 115 | 5.08e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449360 | I3T793 | 71.429 | 154 | 44 | 0 | 1 | 154 | 1 | 154 | 2.46e-74 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031650 | Msa0449360 | 0.814044 | 1.882750e-51 | -8.615850e-47 |
| Msa0036230 | Msa0449360 | 0.815780 | 7.758934e-52 | -8.615850e-47 |
| Msa0080620 | Msa0449360 | -0.801118 | 1.046971e-48 | -8.615850e-47 |
| Msa0093530 | Msa0449360 | 0.807665 | 4.524410e-50 | -8.615850e-47 |
| Msa0126960 | Msa0449360 | 0.810550 | 1.090344e-50 | -8.615850e-47 |
| Msa0139270 | Msa0449360 | 0.812413 | 4.293678e-51 | -8.615850e-47 |
| Msa0160580 | Msa0449360 | 0.803732 | 3.029708e-49 | -8.615850e-47 |
| Msa0171740 | Msa0449360 | 0.818714 | 1.696641e-52 | -8.615850e-47 |
| Msa0218060 | Msa0449360 | 0.817777 | 2.764789e-52 | -8.615850e-47 |
| Msa0409250 | Msa0449360 | 0.801476 | 8.842065e-49 | -8.615850e-47 |
| Msa0449290 | Msa0449360 | 0.904130 | 1.691634e-79 | -8.615850e-47 |
| Msa0449360 | Msa0449380 | 0.910080 | 2.794206e-82 | -8.615850e-47 |
| Msa0449360 | Msa0449940 | 0.879145 | 1.582252e-69 | -8.615850e-47 |
| Msa0449360 | Msa0549970 | 0.837010 | 6.688119e-57 | -8.615850e-47 |
| Msa0449360 | Msa0589450 | 0.803508 | 3.371704e-49 | -8.615850e-47 |
| Msa0449360 | Msa0589720 | 0.808739 | 2.671250e-50 | -8.615850e-47 |
| Msa0449360 | Msa0605480 | 0.833914 | 4.055399e-56 | -8.615850e-47 |
| Msa0449360 | Msa0623750 | 0.819993 | 8.674686e-53 | -8.615850e-47 |
| Msa0449360 | Msa0645120 | 0.801788 | 7.632749e-49 | -8.615850e-47 |
| Msa0449360 | Msa0646440 | 0.831616 | 1.508871e-55 | -8.615850e-47 |
| Msa0449360 | Msa0758150 | 0.812392 | 4.339592e-51 | -8.615850e-47 |
| Msa0449360 | Msa0793060 | -0.808595 | 2.866588e-50 | -8.615850e-47 |
| Msa0449360 | Msa0817100 | 0.816622 | 5.028286e-52 | -8.615850e-47 |
| Msa0449360 | Msa0896920 | 0.829034 | 6.451167e-55 | -8.615850e-47 |
| Msa0449360 | Msa0932930 | 0.805369 | 1.379777e-49 | -8.615850e-47 |
| Msa0449360 | Msa1006940 | 0.820565 | 6.413216e-53 | -8.615850e-47 |
| Msa0449360 | Msa1024480 | 0.806135 | 9.528441e-50 | -8.615850e-47 |
| Msa0449360 | Msa1069440 | -0.823604 | 1.266635e-53 | -8.615850e-47 |
| Msa0449360 | Msa1083100 | 0.806716 | 7.188076e-50 | -8.615850e-47 |
| Msa0449360 | Msa1103450 | 0.800252 | 1.572871e-48 | -8.615850e-47 |
| Msa0449360 | Msa1138600 | -0.807614 | 4.638573e-50 | -8.615850e-47 |
| Msa0449360 | Msa1190090 | 0.827988 | 1.154320e-54 | -8.615850e-47 |
| Msa0449360 | Msa1211160 | 0.814744 | 1.317842e-51 | -8.615850e-47 |
| Msa0449360 | Msa1221170 | 0.801701 | 7.953678e-49 | -8.615850e-47 |
| Msa0449360 | Msa1233620 | 0.828828 | 7.237825e-55 | -8.615850e-47 |
| Msa0449360 | Msa1258020 | 0.814578 | 1.434547e-51 | -8.615850e-47 |
| Msa0449360 | Msa1275840 | 0.841532 | 4.487499e-58 | -8.615850e-47 |
| Msa0449360 | Msa1299310 | 0.809422 | 1.907313e-50 | -8.615850e-47 |
| Msa0449360 | Msa1314020 | 0.833646 | 4.731818e-56 | -8.615850e-47 |
| Msa0449360 | Msa1329770 | 0.802383 | 5.757397e-49 | -8.615850e-47 |
| Msa0449360 | Msa1339490 | 0.827935 | 1.188551e-54 | -8.615850e-47 |
| Msa0449360 | Msa1378950 | 0.822742 | 2.013147e-53 | -8.615850e-47 |
| Msa0449360 | Msa1401650 | 0.812725 | 3.668609e-51 | -8.615850e-47 |
| Msa0449360 | Msa1409600 | 0.801051 | 1.080431e-48 | -8.615850e-47 |
| Msa0449360 | Msa1452920 | 0.800867 | 1.178263e-48 | -8.615850e-47 |
| Msa0335340 | Msa0449360 | 0.802627 | 5.128509e-49 | -8.615850e-47 |
| Msa0356180 | Msa0449360 | 0.867284 | 1.532456e-65 | -8.615850e-47 |
| Msa0356200 | Msa0449360 | 0.912467 | 1.884521e-83 | -8.615850e-47 |
| Msa0356240 | Msa0449360 | 0.851408 | 9.052461e-61 | -8.615850e-47 |
| Msa0356250 | Msa0449360 | 0.908536 | 1.535680e-81 | -8.615850e-47 |
| Msa0356270 | Msa0449360 | 0.852419 | 4.674745e-61 | -8.615850e-47 |
| Msa0356320 | Msa0449360 | 0.890880 | 6.600073e-74 | -8.615850e-47 |
| Msa0356360 | Msa0449360 | 0.866796 | 2.193529e-65 | -8.615850e-47 |
| Msa0356380 | Msa0449360 | 0.912188 | 2.591158e-83 | -8.615850e-47 |
| Msa0356410 | Msa0449360 | 0.917232 | 6.816855e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449360 | MtrunA17_Chr3g0090571 | 71.429 | 154 | 44 | 0 | 1 | 154 | 1 | 154 | 4.73e-78 | 228 |
| Msa0449360 | MtrunA17_Chr7g0231991 | 54.815 | 135 | 54 | 3 | 23 | 154 | 2 | 132 | 1.10e-46 | 148 |
| Msa0449360 | MtrunA17_Chr7g0232011 | 51.613 | 155 | 64 | 6 | 1 | 154 | 1 | 145 | 3.30e-45 | 145 |
| Msa0449360 | MtrunA17_Chr6g0456951 | 48.667 | 150 | 58 | 6 | 1 | 148 | 1 | 133 | 3.55e-35 | 119 |
| Msa0449360 | MtrunA17_Chr3g0111281 | 44.444 | 153 | 67 | 4 | 1 | 150 | 1 | 138 | 5.01e-35 | 119 |
| Msa0449360 | MtrunA17_Chr7g0236791 | 47.826 | 138 | 66 | 4 | 1 | 136 | 1 | 134 | 3.94e-34 | 116 |
| Msa0449360 | MtrunA17_Chr3g0111261 | 47.712 | 153 | 58 | 6 | 1 | 150 | 1 | 134 | 7.25e-33 | 113 |
| Msa0449360 | MtrunA17_Chr3g0111111 | 41.935 | 155 | 68 | 5 | 1 | 150 | 1 | 138 | 7.46e-33 | 113 |
| Msa0449360 | MtrunA17_Chr3g0111351 | 43.382 | 136 | 68 | 4 | 1 | 134 | 9 | 137 | 5.02e-32 | 111 |
| Msa0449360 | MtrunA17_Chr7g0236801 | 45.714 | 140 | 67 | 6 | 1 | 136 | 1 | 135 | 5.13e-32 | 111 |
| Msa0449360 | MtrunA17_Chr3g0111131 | 43.357 | 143 | 52 | 4 | 1 | 131 | 1 | 126 | 2.15e-31 | 109 |
| Msa0449360 | MtrunA17_Chr3g0111241 | 48.361 | 122 | 53 | 4 | 1 | 119 | 1 | 115 | 1.19e-30 | 107 |
| Msa0449360 | MtrunA17_Chr6g0464071 | 44.667 | 150 | 65 | 5 | 1 | 150 | 1 | 132 | 3.18e-30 | 106 |
| Msa0449360 | MtrunA17_Chr3g0104571 | 42.949 | 156 | 65 | 7 | 1 | 152 | 1 | 136 | 1.20e-29 | 105 |
| Msa0449360 | MtrunA17_Chr8g0344771 | 47.748 | 111 | 55 | 3 | 36 | 145 | 11 | 119 | 4.88e-29 | 103 |
| Msa0449360 | MtrunA17_Chr3g0111071 | 43.262 | 141 | 72 | 5 | 1 | 140 | 1 | 134 | 5.91e-29 | 103 |
| Msa0449360 | MtrunA17_Chr8g0344791 | 51.961 | 102 | 46 | 3 | 36 | 136 | 11 | 110 | 4.84e-28 | 100 |
| Msa0449360 | MtrunA17_Chr8g0344801 | 54.444 | 90 | 38 | 3 | 49 | 136 | 7 | 95 | 5.13e-27 | 97.4 |
| Msa0449360 | MtrunA17_Chr8g0357331 | 53.086 | 81 | 38 | 0 | 74 | 154 | 21 | 101 | 1.63e-26 | 96.3 |
| Msa0449360 | MtrunA17_Chr3g0111191 | 41.463 | 123 | 61 | 3 | 1 | 118 | 1 | 117 | 1.80e-26 | 96.7 |
| Msa0449360 | MtrunA17_Chr3g0111081 | 41.135 | 141 | 75 | 4 | 1 | 140 | 1 | 134 | 1.87e-26 | 97.1 |
| Msa0449360 | MtrunA17_Chr6g0468601 | 38.415 | 164 | 63 | 6 | 1 | 153 | 1 | 137 | 2.90e-26 | 96.7 |
| Msa0449360 | MtrunA17_Chr6g0468621 | 40.000 | 160 | 63 | 7 | 1 | 153 | 1 | 134 | 1.10e-25 | 95.1 |
| Msa0449360 | MtrunA17_Chr6g0456991 | 58.974 | 78 | 30 | 2 | 51 | 127 | 29 | 105 | 1.16e-24 | 91.7 |
| Msa0449360 | MtrunA17_Chr4g0012121 | 39.375 | 160 | 76 | 6 | 1 | 154 | 1 | 145 | 1.22e-22 | 87.4 |
| Msa0449360 | MtrunA17_Chr1g0153591 | 39.370 | 127 | 60 | 4 | 1 | 127 | 1 | 110 | 3.63e-21 | 82.8 |
| Msa0449360 | MtrunA17_Chr3g0111221 | 45.556 | 90 | 44 | 2 | 47 | 134 | 21 | 107 | 8.85e-21 | 82.0 |
| Msa0449360 | MtrunA17_Chr3g0111311 | 52.273 | 88 | 32 | 5 | 35 | 119 | 10 | 90 | 2.49e-20 | 80.1 |
| Msa0449360 | MtrunA17_Chr3g0111711 | 41.322 | 121 | 55 | 5 | 1 | 117 | 1 | 109 | 3.69e-19 | 77.4 |
| Msa0449360 | MtrunA17_Chr8g0359071 | 42.857 | 98 | 40 | 4 | 49 | 144 | 46 | 129 | 3.59e-18 | 75.9 |
| Msa0449360 | MtrunA17_Chr7g0225821 | 35.714 | 126 | 73 | 5 | 1 | 124 | 1 | 120 | 1.86e-17 | 73.6 |
| Msa0449360 | MtrunA17_Chr3g0092701 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 4.82e-17 | 70.9 |
| Msa0449360 | MtrunA17_Chr3g0092851 | 60.000 | 55 | 21 | 1 | 1 | 54 | 1 | 55 | 1.50e-16 | 69.7 |
| Msa0449360 | MtrunA17_Chr3g0092704 | 66.667 | 48 | 16 | 0 | 1 | 48 | 1 | 48 | 5.96e-16 | 68.6 |
| Msa0449360 | MtrunA17_Chr3g0092881 | 53.623 | 69 | 31 | 1 | 1 | 68 | 1 | 69 | 1.68e-15 | 67.0 |
| Msa0449360 | MtrunA17_Chr3g0092841 | 55.072 | 69 | 30 | 1 | 1 | 68 | 1 | 69 | 3.17e-15 | 66.2 |
| Msa0449360 | MtrunA17_Chr3g0092801 | 55.072 | 69 | 30 | 1 | 1 | 68 | 1 | 69 | 3.17e-15 | 66.2 |
| Msa0449360 | MtrunA17_Chr3g0111201 | 47.619 | 63 | 22 | 1 | 88 | 150 | 3 | 54 | 1.83e-13 | 61.2 |
| Msa0449360 | MtrunA17_Chr3g0092901 | 56.140 | 57 | 24 | 1 | 1 | 57 | 1 | 56 | 4.23e-13 | 60.8 |
| Msa0449360 | MtrunA17_Chr3g0090581 | 59.184 | 49 | 20 | 0 | 21 | 69 | 22 | 70 | 4.25e-13 | 60.8 |
| Msa0449360 | MtrunA17_Chr3g0092771 | 83.871 | 31 | 5 | 0 | 1 | 31 | 1 | 31 | 4.15e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTGTCGTTGTCTCATTT+GGG | 0.272707 | 3_3:-32314141 | Msa0449360:CDS |
| AAGATTGTCGTTGTCTCATT+TGG | 0.279174 | 3_3:-32314142 | Msa0449360:CDS |
| CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3_3:-32313984 | Msa0449360:CDS |
| TTTGTTTCCAATTGATCAAT+TGG | 0.321512 | 3_3:-32313749 | Msa0449360:three_prime_UTR |
| TTGTGATTACCGCAATAATT+CGG | 0.329100 | 3_3:+32314164 | None:intergenic |
| GCAGAACGTTATTTCAAGAT+TGG | 0.331624 | 3_3:-32313936 | Msa0449360:CDS |
| AAGAAATCCAATTGATCAAT+TGG | 0.360164 | 3_3:+32313742 | None:intergenic |
| TTATGTTAAGCTTGCTACTT+TGG | 0.361027 | 3_3:-32314494 | Msa0449360:CDS |
| TGTGATTACCGCAATAATTC+GGG | 0.372686 | 3_3:+32314165 | None:intergenic |
| CTGCTTCAACGTTCTTCGTC+TGG | 0.376847 | 3_3:+32314228 | None:intergenic |
| AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3_3:-32313859 | Msa0449360:CDS |
| ATATTATGTTCAGAACTAGT+TGG | 0.401485 | 3_3:+32314092 | None:intergenic |
| ATTGATCAATTGGATTTCTT+CGG | 0.409409 | 3_3:-32313739 | Msa0449360:three_prime_UTR |
| CGAGACATATCATTCTTAAG+TGG | 0.433054 | 3_3:+32313830 | None:intergenic |
| CCATATTCAATATCAGCATT+AGG | 0.437256 | 3_3:+32313984 | None:intergenic |
| CCGCAATAATTCGGGTCAAA+TGG | 0.448213 | 3_3:+32314173 | None:intergenic |
| CGGGTCAAATGGTGAACAAA+AGG | 0.469881 | 3_3:+32314184 | None:intergenic |
| TCTTCGGTATGTATTGTGCA+TGG | 0.484118 | 3_3:-32313723 | Msa0449360:three_prime_UTR |
| GAGTGCATCAAGAAGGGAAG+TGG | 0.522512 | 3_3:-32314026 | Msa0449360:CDS |
| CTTCGGTATGTATTGTGCAT+GGG | 0.523431 | 3_3:-32313722 | Msa0449360:three_prime_UTR |
| AATTGATCAATTGGAAACAA+AGG | 0.536616 | 3_3:+32313751 | None:intergenic |
| TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3_3:-32314033 | Msa0449360:CDS |
| GATTGTCGTTGTCTCATTTG+GGG | 0.562923 | 3_3:-32314140 | Msa0449360:CDS |
| GCAGCGAGCTGTCCGTATGA+AGG | 0.566459 | 3_3:-32314209 | Msa0449360:CDS |
| CCATTTGACCCGAATTATTG+CGG | 0.576067 | 3_3:-32314173 | Msa0449360:CDS |
| ATTGTCGTTGTCTCATTTGG+GGG | 0.594430 | 3_3:-32314139 | Msa0449360:CDS |
| GAACAAAAGGAACCTTCATA+CGG | 0.601556 | 3_3:+32314197 | None:intergenic |
| ACTTCCCTTCTTGATGCACT+CGG | 0.605609 | 3_3:+32314028 | None:intergenic |
| TACAGAATGTGGTGAGCATG+AGG | 0.609081 | 3_3:+32314467 | None:intergenic |
| CGTTCTGCTTCATCTACAGA+GGG | 0.611592 | 3_3:+32313951 | None:intergenic |
| CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3_3:-32314032 | Msa0449360:CDS |
| ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3_3:-32313980 | Msa0449360:CDS |
| AGTGCATCAAGAAGGGAAGT+GGG | 0.648471 | 3_3:-32314025 | Msa0449360:CDS |
| ACGTTCTGCTTCATCTACAG+AGG | 0.649348 | 3_3:+32313950 | None:intergenic |
| CATGCACATGATAACATGCA+TGG | 0.677543 | 3_3:+32313672 | None:intergenic |
| ACATAATATGAAGATGATCG+AGG | 0.692790 | 3_3:-32314078 | Msa0449360:CDS |
| TAGATGCATGATAACATGCA+TGG | 0.728301 | 3_3:+32313792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCGATATATATTTATATGTT+AGG | - | chr3_3:32313829-32313848 | Msa0449360:exon | 15.0% |
| !! | TCGATATATATTTATATGTT+AGG | - | chr3_3:32313829-32313848 | Msa0449360:exon | 15.0% |
| !!! | ACTTTATTTTGATCAAACAA+TGG | - | chr3_3:32313720-32313739 | Msa0449360:three_prime_UTR | 20.0% |
| !! | AAAAATATACATACAGAATG+TGG | + | chr3_3:32313785-32313804 | None:intergenic | 20.0% |
| !! | CGTATATATTTATGAAAGTT+TGG | + | chr3_3:32313931-32313950 | None:intergenic | 20.0% |
| !!! | TGAAGAATTTTTTTACTACA+GGG | + | chr3_3:32314334-32314353 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTTTTTACTAC+AGG | + | chr3_3:32314335-32314354 | None:intergenic | 20.0% |
| !!! | ACTTTATTTTGATCAAACAA+TGG | - | chr3_3:32313720-32313739 | Msa0449360:three_prime_UTR | 20.0% |
| !! | AAAAATATACATACAGAATG+TGG | + | chr3_3:32313785-32313804 | None:intergenic | 20.0% |
| !! | CGTATATATTTATGAAAGTT+TGG | + | chr3_3:32313931-32313950 | None:intergenic | 20.0% |
| !!! | TGAAGAATTTTTTTACTACA+GGG | + | chr3_3:32314334-32314353 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTTTTTACTAC+AGG | + | chr3_3:32314335-32314354 | None:intergenic | 20.0% |
| ! | ATATTATGTTCAGAACTAGT+TGG | + | chr3_3:32314149-32314168 | None:intergenic | 25.0% |
| ! | AATTGATCAATTGGAAACAA+AGG | + | chr3_3:32314490-32314509 | None:intergenic | 25.0% |
| ! | TTTGTTTCCAATTGATCAAT+TGG | - | chr3_3:32314489-32314508 | Msa0449360:CDS | 25.0% |
| ! | AAGAAATCCAATTGATCAAT+TGG | + | chr3_3:32314499-32314518 | None:intergenic | 25.0% |
| ! | ATTGATCAATTGGATTTCTT+CGG | - | chr3_3:32314499-32314518 | Msa0449360:CDS | 25.0% |
| ! | ATATTATGTTCAGAACTAGT+TGG | + | chr3_3:32314149-32314168 | None:intergenic | 25.0% |
| ! | AATTGATCAATTGGAAACAA+AGG | + | chr3_3:32314490-32314509 | None:intergenic | 25.0% |
| ! | TTTGTTTCCAATTGATCAAT+TGG | - | chr3_3:32314489-32314508 | Msa0449360:CDS | 25.0% |
| ! | AAGAAATCCAATTGATCAAT+TGG | + | chr3_3:32314499-32314518 | None:intergenic | 25.0% |
| ! | ATTGATCAATTGGATTTCTT+CGG | - | chr3_3:32314499-32314518 | Msa0449360:CDS | 25.0% |
| !! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32313744-32313763 | Msa0449360:three_prime_UTR | 30.0% |
| TTGTGATTACCGCAATAATT+CGG | + | chr3_3:32314077-32314096 | None:intergenic | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | - | chr3_3:32314160-32314179 | Msa0449360:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | + | chr3_3:32314257-32314276 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | - | chr3_3:32314254-32314273 | Msa0449360:intron | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | - | chr3_3:32314258-32314277 | Msa0449360:intron | 30.0% | |
| !!! | GAATTTTTTTACTACAGGGT+TGG | + | chr3_3:32314330-32314349 | None:intergenic | 30.0% |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32314363-32314382 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32314373-32314392 | Msa0449360:intron | 30.0% | |
| !! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32313744-32313763 | Msa0449360:three_prime_UTR | 30.0% |
| TTGTGATTACCGCAATAATT+CGG | + | chr3_3:32314077-32314096 | None:intergenic | 30.0% | |
| ACATAATATGAAGATGATCG+AGG | - | chr3_3:32314160-32314179 | Msa0449360:CDS | 30.0% | |
| CCATATTCAATATCAGCATT+AGG | + | chr3_3:32314257-32314276 | None:intergenic | 30.0% | |
| CCTAATGCTGATATTGAATA+TGG | - | chr3_3:32314254-32314273 | Msa0449360:intron | 30.0% | |
| ATGCTGATATTGAATATGGA+TGG | - | chr3_3:32314258-32314277 | Msa0449360:intron | 30.0% | |
| !!! | GAATTTTTTTACTACAGGGT+TGG | + | chr3_3:32314330-32314349 | None:intergenic | 30.0% |
| !! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32314363-32314382 | None:intergenic | 30.0% |
| TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32314373-32314392 | Msa0449360:intron | 30.0% | |
| CGTTATATTCACACGTGTAT+TGG | - | chr3_3:32313949-32313968 | Msa0449360:CDS | 35.0% | |
| GAACAAAAGGAACCTTCATA+CGG | + | chr3_3:32314044-32314063 | None:intergenic | 35.0% | |
| TGTGATTACCGCAATAATTC+GGG | + | chr3_3:32314076-32314095 | None:intergenic | 35.0% | |
| AAGATTGTCGTTGTCTCATT+TGG | - | chr3_3:32314096-32314115 | Msa0449360:CDS | 35.0% | |
| AGATTGTCGTTGTCTCATTT+GGG | - | chr3_3:32314097-32314116 | Msa0449360:CDS | 35.0% | |
| !!! | CTCATTTGGGGGATATTTTT+TGG | - | chr3_3:32314110-32314129 | Msa0449360:CDS | 35.0% |
| ! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32314191-32314210 | None:intergenic | 35.0% |
| ! | GCAGAACGTTATTTCAAGAT+TGG | - | chr3_3:32314302-32314321 | Msa0449360:intron | 35.0% |
| CGAGACATATCATTCTTAAG+TGG | + | chr3_3:32314411-32314430 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | + | chr3_3:32314449-32314468 | None:intergenic | 35.0% | |
| CGTTATATTCACACGTGTAT+TGG | - | chr3_3:32313949-32313968 | Msa0449360:CDS | 35.0% | |
| GAACAAAAGGAACCTTCATA+CGG | + | chr3_3:32314044-32314063 | None:intergenic | 35.0% | |
| TGTGATTACCGCAATAATTC+GGG | + | chr3_3:32314076-32314095 | None:intergenic | 35.0% | |
| AAGATTGTCGTTGTCTCATT+TGG | - | chr3_3:32314096-32314115 | Msa0449360:CDS | 35.0% | |
| AGATTGTCGTTGTCTCATTT+GGG | - | chr3_3:32314097-32314116 | Msa0449360:CDS | 35.0% | |
| !!! | CTCATTTGGGGGATATTTTT+TGG | - | chr3_3:32314110-32314129 | Msa0449360:CDS | 35.0% |
| ! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32314191-32314210 | None:intergenic | 35.0% |
| ! | GCAGAACGTTATTTCAAGAT+TGG | - | chr3_3:32314302-32314321 | Msa0449360:intron | 35.0% |
| CGAGACATATCATTCTTAAG+TGG | + | chr3_3:32314411-32314430 | None:intergenic | 35.0% | |
| TAGATGCATGATAACATGCA+TGG | + | chr3_3:32314449-32314468 | None:intergenic | 35.0% | |
| ATGGCAAAGGCAGTCAAAAT+TGG | + | chr3_3:32313977-32313996 | None:intergenic | 40.0% | |
| ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32313990-32314009 | None:intergenic | 40.0% | |
| CCATTTGACCCGAATTATTG+CGG | - | chr3_3:32314065-32314084 | Msa0449360:CDS | 40.0% | |
| GATTGTCGTTGTCTCATTTG+GGG | - | chr3_3:32314098-32314117 | Msa0449360:CDS | 40.0% | |
| ATTGTCGTTGTCTCATTTGG+GGG | - | chr3_3:32314099-32314118 | Msa0449360:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32314379-32314398 | Msa0449360:intron | 40.0% | |
| TCTTCGGTATGTATTGTGCA+TGG | - | chr3_3:32314515-32314534 | Msa0449360:exon | 40.0% | |
| CTTCGGTATGTATTGTGCAT+GGG | - | chr3_3:32314516-32314535 | Msa0449360:exon | 40.0% | |
| ATGGCAAAGGCAGTCAAAAT+TGG | + | chr3_3:32313977-32313996 | None:intergenic | 40.0% | |
| ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32313990-32314009 | None:intergenic | 40.0% | |
| CCATTTGACCCGAATTATTG+CGG | - | chr3_3:32314065-32314084 | Msa0449360:CDS | 40.0% | |
| GATTGTCGTTGTCTCATTTG+GGG | - | chr3_3:32314098-32314117 | Msa0449360:CDS | 40.0% | |
| ATTGTCGTTGTCTCATTTGG+GGG | - | chr3_3:32314099-32314118 | Msa0449360:CDS | 40.0% | |
| AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32314379-32314398 | Msa0449360:intron | 40.0% | |
| TCTTCGGTATGTATTGTGCA+TGG | - | chr3_3:32314515-32314534 | Msa0449360:exon | 40.0% | |
| CTTCGGTATGTATTGTGCAT+GGG | - | chr3_3:32314516-32314535 | Msa0449360:exon | 40.0% | |
| TACAGAATGTGGTGAGCATG+AGG | + | chr3_3:32313774-32313793 | None:intergenic | 45.0% | |
| GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32313996-32314015 | None:intergenic | 45.0% | |
| CGGGTCAAATGGTGAACAAA+AGG | + | chr3_3:32314057-32314076 | None:intergenic | 45.0% | |
| CCGCAATAATTCGGGTCAAA+TGG | + | chr3_3:32314068-32314087 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32314213-32314232 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | - | chr3_3:32314213-32314232 | Msa0449360:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | + | chr3_3:32314290-32314309 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | + | chr3_3:32314291-32314310 | None:intergenic | 45.0% | |
| TACAGAATGTGGTGAGCATG+AGG | + | chr3_3:32313774-32313793 | None:intergenic | 45.0% | |
| GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32313996-32314015 | None:intergenic | 45.0% | |
| CGGGTCAAATGGTGAACAAA+AGG | + | chr3_3:32314057-32314076 | None:intergenic | 45.0% | |
| CCGCAATAATTCGGGTCAAA+TGG | + | chr3_3:32314068-32314087 | None:intergenic | 45.0% | |
| ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32314213-32314232 | None:intergenic | 45.0% | |
| AGTGCATCAAGAAGGGAAGT+GGG | - | chr3_3:32314213-32314232 | Msa0449360:CDS | 45.0% | |
| CGTTCTGCTTCATCTACAGA+GGG | + | chr3_3:32314290-32314309 | None:intergenic | 45.0% | |
| ACGTTCTGCTTCATCTACAG+AGG | + | chr3_3:32314291-32314310 | None:intergenic | 45.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32314013-32314032 | None:intergenic | 50.0% | |
| TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32314205-32314224 | Msa0449360:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32314206-32314225 | Msa0449360:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | - | chr3_3:32314212-32314231 | Msa0449360:CDS | 50.0% | |
| CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32314013-32314032 | None:intergenic | 50.0% | |
| TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32314205-32314224 | Msa0449360:CDS | 50.0% | |
| CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32314206-32314225 | Msa0449360:CDS | 50.0% | |
| GAGTGCATCAAGAAGGGAAG+TGG | - | chr3_3:32314212-32314231 | Msa0449360:CDS | 50.0% | |
| GCAGCGAGCTGTCCGTATGA+AGG | - | chr3_3:32314029-32314048 | Msa0449360:CDS | 60.0% | |
| GCAGCGAGCTGTCCGTATGA+AGG | - | chr3_3:32314029-32314048 | Msa0449360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 32313680 | 32314580 | 32313680 | ID=Msa0449360;Name=Msa0449360 |
| chr3_3 | mRNA | 32313680 | 32314580 | 32313680 | ID=Msa0449360-mRNA-1;Parent=Msa0449360;Name=Msa0449360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|2|165|154 |
| chr3_3 | exon | 32313680 | 32314257 | 32313680 | ID=Msa0449360-mRNA-1:exon:5905;Parent=Msa0449360-mRNA-1 |
| chr3_3 | exon | 32314470 | 32314580 | 32314470 | ID=Msa0449360-mRNA-1:exon:5904;Parent=Msa0449360-mRNA-1 |
| chr3_3 | five_prime_UTR | 32314522 | 32314580 | 32314522 | ID=Msa0449360-mRNA-1:five_prime_utr;Parent=Msa0449360-mRNA-1 |
| chr3_3 | CDS | 32314470 | 32314521 | 32314470 | ID=Msa0449360-mRNA-1:cds;Parent=Msa0449360-mRNA-1 |
| chr3_3 | CDS | 32313845 | 32314257 | 32313845 | ID=Msa0449360-mRNA-1:cds;Parent=Msa0449360-mRNA-1 |
| chr3_3 | three_prime_UTR | 32313680 | 32313844 | 32313680 | ID=Msa0449360-mRNA-1:three_prime_utr;Parent=Msa0449360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
