Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449380 | ACJ85909.1 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 5.75e-77 | 236 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449380 | sp|P62929|ALB1D_PEA | 52.632 | 133 | 55 | 5 | 1 | 132 | 1 | 126 | 3.84e-35 | 122 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449380 | B7FMC6 | 73.377 | 154 | 41 | 0 | 1 | 154 | 1 | 154 | 2.75e-77 | 236 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011010 | Msa0449380 | 0.826259 | 2.991776e-54 | -8.615850e-47 |
Msa0011040 | Msa0449380 | 0.816880 | 4.401027e-52 | -8.615850e-47 |
Msa0024650 | Msa0449380 | 0.817308 | 3.528336e-52 | -8.615850e-47 |
Msa0025570 | Msa0449380 | 0.849947 | 2.331609e-60 | -8.615850e-47 |
Msa0031650 | Msa0449380 | 0.826462 | 2.677566e-54 | -8.615850e-47 |
Msa0048380 | Msa0449380 | 0.826443 | 2.705370e-54 | -8.615850e-47 |
Msa0051980 | Msa0449380 | 0.821449 | 4.013190e-53 | -8.615850e-47 |
Msa0060410 | Msa0449380 | 0.829779 | 4.253875e-55 | -8.615850e-47 |
Msa0073110 | Msa0449380 | 0.853521 | 2.261571e-61 | -8.615850e-47 |
Msa0093530 | Msa0449380 | 0.825702 | 4.059437e-54 | -8.615850e-47 |
Msa0097010 | Msa0449380 | 0.818277 | 2.131774e-52 | -8.615850e-47 |
Msa0098380 | Msa0449380 | 0.826542 | 2.562289e-54 | -8.615850e-47 |
Msa0117650 | Msa0449380 | 0.808098 | 3.659860e-50 | -8.615850e-47 |
Msa0120450 | Msa0449380 | 0.832362 | 9.873206e-56 | -8.615850e-47 |
Msa0121320 | Msa0449380 | 0.825350 | 4.918390e-54 | -8.615850e-47 |
Msa0126960 | Msa0449380 | 0.825948 | 3.548252e-54 | -8.615850e-47 |
Msa0160580 | Msa0449380 | 0.812936 | 3.299474e-51 | -8.615850e-47 |
Msa0163690 | Msa0449380 | 0.846317 | 2.343918e-59 | -8.615850e-47 |
Msa0166180 | Msa0449380 | 0.806182 | 9.315553e-50 | -8.615850e-47 |
Msa0171740 | Msa0449380 | 0.841538 | 4.472906e-58 | -8.615850e-47 |
Msa0175060 | Msa0449380 | 0.809787 | 1.592233e-50 | -8.615850e-47 |
Msa0195190 | Msa0449380 | 0.821960 | 3.057710e-53 | -8.615850e-47 |
Msa0199440 | Msa0449380 | 0.807491 | 4.925156e-50 | -8.615850e-47 |
Msa0203880 | Msa0449380 | 0.802108 | 6.558857e-49 | -8.615850e-47 |
Msa0218060 | Msa0449380 | 0.822556 | 2.224078e-53 | -8.615850e-47 |
Msa0225920 | Msa0449380 | 0.808800 | 2.592086e-50 | -8.615850e-47 |
Msa0234130 | Msa0449380 | 0.809651 | 1.702741e-50 | -8.615850e-47 |
Msa0375620 | Msa0449380 | 0.810670 | 1.027139e-50 | -8.615850e-47 |
Msa0444400 | Msa0449380 | 0.805622 | 1.221360e-49 | -8.615850e-47 |
Msa0449290 | Msa0449380 | 0.901677 | 2.102944e-78 | -8.615850e-47 |
Msa0449360 | Msa0449380 | 0.910080 | 2.794206e-82 | -8.615850e-47 |
Msa0449380 | Msa0449940 | 0.897021 | 2.104792e-76 | -8.615850e-47 |
Msa0449380 | Msa0454770 | 0.822404 | 2.412787e-53 | -8.615850e-47 |
Msa0449380 | Msa0464310 | 0.800474 | 1.416988e-48 | -8.615850e-47 |
Msa0449380 | Msa0487100 | 0.800823 | 1.202767e-48 | -8.615850e-47 |
Msa0449380 | Msa0487110 | 0.831591 | 1.530175e-55 | -8.615850e-47 |
Msa0449380 | Msa0531800 | 0.801285 | 9.676499e-49 | -8.615850e-47 |
Msa0449380 | Msa0540640 | 0.837631 | 4.636889e-57 | -8.615850e-47 |
Msa0449380 | Msa0545680 | 0.804771 | 1.840719e-49 | -8.615850e-47 |
Msa0449380 | Msa0547370 | 0.836680 | 8.121034e-57 | -8.615850e-47 |
Msa0449380 | Msa0549970 | 0.815372 | 9.564125e-52 | -8.615850e-47 |
Msa0449380 | Msa0566280 | 0.801328 | 9.482382e-49 | -8.615850e-47 |
Msa0449380 | Msa0567330 | 0.825920 | 3.602545e-54 | -8.615850e-47 |
Msa0449380 | Msa0567570 | 0.816461 | 5.463413e-52 | -8.615850e-47 |
Msa0449380 | Msa0576320 | 0.820900 | 5.371638e-53 | -8.615850e-47 |
Msa0449380 | Msa0587710 | 0.845897 | 3.049480e-59 | -8.615850e-47 |
Msa0449380 | Msa0588040 | 0.804268 | 2.343933e-49 | -8.615850e-47 |
Msa0449380 | Msa0589460 | 0.800323 | 1.521180e-48 | -8.615850e-47 |
Msa0449380 | Msa0589740 | 0.801995 | 6.920238e-49 | -8.615850e-47 |
Msa0449380 | Msa0597800 | 0.812573 | 3.961058e-51 | -8.615850e-47 |
Msa0449380 | Msa0597820 | 0.813759 | 2.175073e-51 | -8.615850e-47 |
Msa0449380 | Msa0601400 | 0.807128 | 5.879213e-50 | -8.615850e-47 |
Msa0449380 | Msa0602100 | 0.824234 | 9.013962e-54 | -8.615850e-47 |
Msa0449380 | Msa0604280 | 0.807719 | 4.405575e-50 | -8.615850e-47 |
Msa0449380 | Msa0605480 | 0.818409 | 1.989625e-52 | -8.615850e-47 |
Msa0449380 | Msa0624360 | -0.804058 | 2.591436e-49 | -8.615850e-47 |
Msa0449380 | Msa0628200 | 0.803763 | 2.985468e-49 | -8.615850e-47 |
Msa0449380 | Msa0629720 | 0.811972 | 5.357977e-51 | -8.615850e-47 |
Msa0449380 | Msa0643230 | 0.830580 | 2.711092e-55 | -8.615850e-47 |
Msa0449380 | Msa0645370 | 0.806362 | 8.533823e-50 | -8.615850e-47 |
Msa0449380 | Msa0646440 | 0.827159 | 1.825115e-54 | -8.615850e-47 |
Msa0449380 | Msa0657710 | 0.801347 | 9.398064e-49 | -8.615850e-47 |
Msa0449380 | Msa0658150 | 0.821142 | 4.724231e-53 | -8.615850e-47 |
Msa0449380 | Msa0659230 | 0.821803 | 3.324013e-53 | -8.615850e-47 |
Msa0449380 | Msa0667600 | 0.801897 | 7.250310e-49 | -8.615850e-47 |
Msa0449380 | Msa0680460 | 0.804947 | 1.691097e-49 | -8.615850e-47 |
Msa0449380 | Msa0682910 | 0.831793 | 1.364827e-55 | -8.615850e-47 |
Msa0449380 | Msa0702800 | 0.805406 | 1.355760e-49 | -8.615850e-47 |
Msa0449380 | Msa0703000 | 0.822547 | 2.234501e-53 | -8.615850e-47 |
Msa0449380 | Msa0716000 | 0.815874 | 7.390441e-52 | -8.615850e-47 |
Msa0449380 | Msa0716980 | 0.821684 | 3.542862e-53 | -8.615850e-47 |
Msa0449380 | Msa0717030 | 0.806267 | 8.936998e-50 | -8.615850e-47 |
Msa0449380 | Msa0718770 | 0.832583 | 8.704149e-56 | -8.615850e-47 |
Msa0449380 | Msa0730890 | 0.831298 | 1.807005e-55 | -8.615850e-47 |
Msa0449380 | Msa0734080 | 0.808146 | 3.574254e-50 | -8.615850e-47 |
Msa0449380 | Msa0734100 | 0.813890 | 2.035254e-51 | -8.615850e-47 |
Msa0449380 | Msa0758150 | 0.808456 | 3.069606e-50 | -8.615850e-47 |
Msa0449380 | Msa0792410 | 0.814703 | 1.345746e-51 | -8.615850e-47 |
Msa0449380 | Msa0798840 | 0.809705 | 1.658025e-50 | -8.615850e-47 |
Msa0449380 | Msa0817100 | 0.811377 | 7.216946e-51 | -8.615850e-47 |
Msa0449380 | Msa0827800 | 0.806085 | 9.763380e-50 | -8.615850e-47 |
Msa0449380 | Msa0831310 | 0.806820 | 6.831645e-50 | -8.615850e-47 |
Msa0449380 | Msa0854380 | 0.806546 | 7.803831e-50 | -8.615850e-47 |
Msa0449380 | Msa0893220 | 0.809137 | 2.194934e-50 | -8.615850e-47 |
Msa0449380 | Msa0896920 | 0.853092 | 3.001806e-61 | -8.615850e-47 |
Msa0449380 | Msa0896950 | 0.821827 | 3.282661e-53 | -8.615850e-47 |
Msa0449380 | Msa0909260 | 0.802473 | 5.518874e-49 | -8.615850e-47 |
Msa0449380 | Msa0910170 | 0.826138 | 3.197951e-54 | -8.615850e-47 |
Msa0449380 | Msa0932900 | 0.821955 | 3.066017e-53 | -8.615850e-47 |
Msa0449380 | Msa0932930 | 0.819944 | 8.898793e-53 | -8.615850e-47 |
Msa0449380 | Msa0964510 | 0.827783 | 1.292789e-54 | -8.615850e-47 |
Msa0449380 | Msa0970790 | 0.826169 | 3.143863e-54 | -8.615850e-47 |
Msa0449380 | Msa0970820 | 0.802654 | 5.064515e-49 | -8.615850e-47 |
Msa0449380 | Msa0996980 | 0.804451 | 2.146517e-49 | -8.615850e-47 |
Msa0449380 | Msa1005370 | 0.800661 | 1.297765e-48 | -8.615850e-47 |
Msa0449380 | Msa1007930 | 0.804294 | 2.314662e-49 | -8.615850e-47 |
Msa0449380 | Msa1024480 | 0.851619 | 7.889024e-61 | -8.615850e-47 |
Msa0449380 | Msa1029840 | 0.808115 | 3.628753e-50 | -8.615850e-47 |
Msa0449380 | Msa1029860 | 0.820354 | 7.171190e-53 | -8.615850e-47 |
Msa0449380 | Msa1035050 | 0.812692 | 3.731408e-51 | -8.615850e-47 |
Msa0449380 | Msa1041910 | 0.805340 | 1.399230e-49 | -8.615850e-47 |
Msa0449380 | Msa1049400 | 0.840983 | 6.259758e-58 | -8.615850e-47 |
Msa0449380 | Msa1062290 | 0.807386 | 5.185492e-50 | -8.615850e-47 |
Msa0449380 | Msa1064940 | 0.800874 | 1.174305e-48 | -8.615850e-47 |
Msa0449380 | Msa1099640 | 0.813626 | 2.327256e-51 | -8.615850e-47 |
Msa0449380 | Msa1099650 | 0.812495 | 4.118965e-51 | -8.615850e-47 |
Msa0449380 | Msa1103450 | 0.840066 | 1.087766e-57 | -8.615850e-47 |
Msa0449380 | Msa1107320 | 0.812084 | 5.064333e-51 | -8.615850e-47 |
Msa0449380 | Msa1107520 | 0.822830 | 1.920339e-53 | -8.615850e-47 |
Msa0449380 | Msa1108610 | 0.811725 | 6.064945e-51 | -8.615850e-47 |
Msa0449380 | Msa1115900 | 0.803229 | 3.851424e-49 | -8.615850e-47 |
Msa0449380 | Msa1131300 | -0.815721 | 7.994624e-52 | -8.615850e-47 |
Msa0449380 | Msa1143250 | 0.813808 | 2.121714e-51 | -8.615850e-47 |
Msa0449380 | Msa1147010 | 0.838068 | 3.582160e-57 | -8.615850e-47 |
Msa0449380 | Msa1160540 | 0.839163 | 1.867140e-57 | -8.615850e-47 |
Msa0449380 | Msa1167960 | 0.814877 | 1.231531e-51 | -8.615850e-47 |
Msa0449380 | Msa1179190 | 0.806897 | 6.579165e-50 | -8.615850e-47 |
Msa0449380 | Msa1181090 | 0.808258 | 3.382976e-50 | -8.615850e-47 |
Msa0449380 | Msa1191270 | 0.802387 | 5.748319e-49 | -8.615850e-47 |
Msa0449380 | Msa1206330 | 0.829896 | 3.983240e-55 | -8.615850e-47 |
Msa0449380 | Msa1206380 | 0.832920 | 7.177728e-56 | -8.615850e-47 |
Msa0449380 | Msa1223710 | 0.827688 | 1.362720e-54 | -8.615850e-47 |
Msa0449380 | Msa1223990 | 0.828637 | 8.049832e-55 | -8.615850e-47 |
Msa0449380 | Msa1233620 | 0.840483 | 8.460774e-58 | -8.615850e-47 |
Msa0449380 | Msa1239210 | 0.800583 | 1.346262e-48 | -8.615850e-47 |
Msa0449380 | Msa1241960 | 0.802399 | 5.715342e-49 | -8.615850e-47 |
Msa0449380 | Msa1259570 | 0.803734 | 3.026149e-49 | -8.615850e-47 |
Msa0449380 | Msa1263110 | 0.829418 | 5.205478e-55 | -8.615850e-47 |
Msa0449380 | Msa1263120 | 0.812957 | 3.264220e-51 | -8.615850e-47 |
Msa0449380 | Msa1263370 | 0.818513 | 1.884440e-52 | -8.615850e-47 |
Msa0449380 | Msa1268360 | 0.801619 | 8.268158e-49 | -8.615850e-47 |
Msa0449380 | Msa1269200 | 0.814379 | 1.587801e-51 | -8.615850e-47 |
Msa0449380 | Msa1273320 | 0.822259 | 2.607121e-53 | -8.615850e-47 |
Msa0449380 | Msa1275840 | 0.842488 | 2.507604e-58 | -8.615850e-47 |
Msa0449380 | Msa1284020 | 0.820338 | 7.231155e-53 | -8.615850e-47 |
Msa0449380 | Msa1296490 | 0.804020 | 2.639775e-49 | -8.615850e-47 |
Msa0449380 | Msa1302630 | 0.809860 | 1.535254e-50 | -8.615850e-47 |
Msa0449380 | Msa1314020 | 0.847037 | 1.489424e-59 | -8.615850e-47 |
Msa0449380 | Msa1314050 | 0.801777 | 7.673699e-49 | -8.615850e-47 |
Msa0449380 | Msa1322960 | 0.810231 | 1.277456e-50 | -8.615850e-47 |
Msa0449380 | Msa1344450 | 0.807440 | 5.049250e-50 | -8.615850e-47 |
Msa0449380 | Msa1362520 | 0.832049 | 1.179734e-55 | -8.615850e-47 |
Msa0449380 | Msa1378950 | 0.815764 | 7.820420e-52 | -8.615850e-47 |
Msa0449380 | Msa1395080 | 0.823632 | 1.247573e-53 | -8.615850e-47 |
Msa0449380 | Msa1407810 | 0.826335 | 2.869732e-54 | -8.615850e-47 |
Msa0449380 | Msa1409600 | 0.802379 | 5.767966e-49 | -8.615850e-47 |
Msa0449380 | Msa1417220 | 0.831098 | 2.023660e-55 | -8.615850e-47 |
Msa0449380 | Msa1433360 | 0.828207 | 1.022136e-54 | -8.615850e-47 |
Msa0449380 | Msa1436400 | 0.816322 | 5.869507e-52 | -8.615850e-47 |
Msa0449380 | Msa1437780 | 0.827834 | 1.256611e-54 | -8.615850e-47 |
Msa0449380 | Msa1441300 | 0.822607 | 2.163510e-53 | -8.615850e-47 |
Msa0449380 | Msa1445530 | 0.820851 | 5.511567e-53 | -8.615850e-47 |
Msa0449380 | Msa1458270 | 0.807683 | 4.483303e-50 | -8.615850e-47 |
Msa0449380 | Msa1462610 | 0.816871 | 4.422104e-52 | -8.615850e-47 |
Msa0240580 | Msa0449380 | 0.831295 | 1.809901e-55 | -8.615850e-47 |
Msa0244310 | Msa0449380 | 0.821659 | 3.589820e-53 | -8.615850e-47 |
Msa0245660 | Msa0449380 | 0.813519 | 2.456987e-51 | -8.615850e-47 |
Msa0247050 | Msa0449380 | 0.803049 | 4.195679e-49 | -8.615850e-47 |
Msa0248320 | Msa0449380 | 0.815484 | 9.030737e-52 | -8.615850e-47 |
Msa0258010 | Msa0449380 | 0.823961 | 1.044857e-53 | -8.615850e-47 |
Msa0258740 | Msa0449380 | 0.801429 | 9.041931e-49 | -8.615850e-47 |
Msa0267710 | Msa0449380 | 0.802667 | 5.032426e-49 | -8.615850e-47 |
Msa0278960 | Msa0449380 | 0.835784 | 1.371263e-56 | -8.615850e-47 |
Msa0280160 | Msa0449380 | 0.823641 | 1.241296e-53 | -8.615850e-47 |
Msa0282830 | Msa0449380 | 0.823371 | 1.436096e-53 | -8.615850e-47 |
Msa0286360 | Msa0449380 | 0.823193 | 1.580043e-53 | -8.615850e-47 |
Msa0307630 | Msa0449380 | 0.813431 | 2.569263e-51 | -8.615850e-47 |
Msa0318360 | Msa0449380 | 0.824027 | 1.007990e-53 | -8.615850e-47 |
Msa0321240 | Msa0449380 | 0.806713 | 7.198471e-50 | -8.615850e-47 |
Msa0331190 | Msa0449380 | 0.818922 | 1.522245e-52 | -8.615850e-47 |
Msa0333770 | Msa0449380 | 0.806436 | 8.234961e-50 | -8.615850e-47 |
Msa0335340 | Msa0449380 | 0.818049 | 2.401166e-52 | -8.615850e-47 |
Msa0336640 | Msa0449380 | 0.805532 | 1.275378e-49 | -8.615850e-47 |
Msa0354600 | Msa0449380 | 0.812445 | 4.225398e-51 | -8.615850e-47 |
Msa0356180 | Msa0449380 | 0.876176 | 1.719505e-68 | -8.615850e-47 |
Msa0356200 | Msa0449380 | 0.874718 | 5.426539e-68 | -8.615850e-47 |
Msa0356240 | Msa0449380 | 0.890006 | 1.454065e-73 | -8.615850e-47 |
Msa0356250 | Msa0449380 | 0.856486 | 3.114322e-62 | -8.615850e-47 |
Msa0356270 | Msa0449380 | 0.885145 | 1.046784e-71 | -8.615850e-47 |
Msa0356320 | Msa0449380 | 0.878055 | 3.826269e-69 | -8.615850e-47 |
Msa0356360 | Msa0449380 | 0.876189 | 1.701380e-68 | -8.615850e-47 |
Msa0356380 | Msa0449380 | 0.879427 | 1.256809e-69 | -8.615850e-47 |
Msa0356410 | Msa0449380 | 0.884912 | 1.278579e-71 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0449380 | MtrunA17_Chr3g0090571 | 72.727 | 154 | 42 | 0 | 1 | 154 | 1 | 154 | 5.40e-80 | 233 |
Msa0449380 | MtrunA17_Chr7g0231991 | 54.074 | 135 | 55 | 3 | 23 | 154 | 2 | 132 | 5.85e-46 | 146 |
Msa0449380 | MtrunA17_Chr7g0232011 | 49.677 | 155 | 67 | 6 | 1 | 154 | 1 | 145 | 7.41e-43 | 139 |
Msa0449380 | MtrunA17_Chr6g0456951 | 48.000 | 150 | 59 | 6 | 1 | 148 | 1 | 133 | 4.46e-35 | 119 |
Msa0449380 | MtrunA17_Chr3g0111281 | 45.455 | 154 | 64 | 5 | 1 | 150 | 1 | 138 | 8.44e-35 | 118 |
Msa0449380 | MtrunA17_Chr3g0111111 | 40.127 | 157 | 68 | 5 | 1 | 150 | 1 | 138 | 5.22e-32 | 111 |
Msa0449380 | MtrunA17_Chr3g0111261 | 47.059 | 153 | 59 | 6 | 1 | 150 | 1 | 134 | 4.09e-31 | 108 |
Msa0449380 | MtrunA17_Chr7g0236791 | 44.928 | 138 | 70 | 4 | 1 | 136 | 1 | 134 | 7.70e-31 | 108 |
Msa0449380 | MtrunA17_Chr7g0236801 | 44.604 | 139 | 70 | 5 | 1 | 136 | 1 | 135 | 2.17e-29 | 104 |
Msa0449380 | MtrunA17_Chr3g0111131 | 41.259 | 143 | 55 | 4 | 1 | 131 | 1 | 126 | 2.85e-29 | 103 |
Msa0449380 | MtrunA17_Chr3g0111351 | 41.912 | 136 | 70 | 4 | 1 | 134 | 9 | 137 | 3.34e-29 | 104 |
Msa0449380 | MtrunA17_Chr6g0464071 | 43.333 | 150 | 67 | 5 | 1 | 150 | 1 | 132 | 1.53e-28 | 102 |
Msa0449380 | MtrunA17_Chr3g0104571 | 41.558 | 154 | 70 | 7 | 1 | 152 | 1 | 136 | 1.79e-28 | 102 |
Msa0449380 | MtrunA17_Chr8g0344771 | 54.255 | 94 | 40 | 3 | 36 | 128 | 11 | 102 | 2.03e-28 | 101 |
Msa0449380 | MtrunA17_Chr8g0344791 | 51.961 | 102 | 46 | 3 | 36 | 136 | 11 | 110 | 4.95e-28 | 100 |
Msa0449380 | MtrunA17_Chr3g0111241 | 45.082 | 122 | 57 | 4 | 1 | 119 | 1 | 115 | 2.80e-27 | 99.0 |
Msa0449380 | MtrunA17_Chr3g0111071 | 40.876 | 137 | 73 | 4 | 1 | 136 | 1 | 130 | 3.03e-27 | 99.0 |
Msa0449380 | MtrunA17_Chr8g0344801 | 55.056 | 89 | 37 | 3 | 50 | 136 | 8 | 95 | 5.36e-27 | 97.4 |
Msa0449380 | MtrunA17_Chr6g0468621 | 42.208 | 154 | 68 | 8 | 1 | 153 | 1 | 134 | 5.67e-27 | 98.2 |
Msa0449380 | MtrunA17_Chr8g0357331 | 51.852 | 81 | 39 | 0 | 74 | 154 | 21 | 101 | 3.27e-25 | 92.8 |
Msa0449380 | MtrunA17_Chr6g0468601 | 37.805 | 164 | 64 | 6 | 1 | 153 | 1 | 137 | 3.68e-25 | 93.6 |
Msa0449380 | MtrunA17_Chr6g0456991 | 58.974 | 78 | 30 | 2 | 51 | 127 | 29 | 105 | 9.00e-25 | 92.0 |
Msa0449380 | MtrunA17_Chr3g0111081 | 40.876 | 137 | 73 | 5 | 1 | 136 | 1 | 130 | 1.20e-24 | 92.4 |
Msa0449380 | MtrunA17_Chr3g0111191 | 40.000 | 125 | 60 | 4 | 1 | 118 | 1 | 117 | 8.23e-24 | 89.7 |
Msa0449380 | MtrunA17_Chr4g0012121 | 39.752 | 161 | 74 | 6 | 1 | 154 | 1 | 145 | 3.43e-21 | 84.0 |
Msa0449380 | MtrunA17_Chr1g0153591 | 40.323 | 124 | 57 | 5 | 1 | 124 | 1 | 107 | 1.28e-19 | 79.0 |
Msa0449380 | MtrunA17_Chr3g0111221 | 45.977 | 87 | 42 | 2 | 50 | 134 | 24 | 107 | 1.45e-19 | 78.6 |
Msa0449380 | MtrunA17_Chr3g0111311 | 51.163 | 86 | 36 | 4 | 35 | 119 | 10 | 90 | 3.06e-19 | 77.4 |
Msa0449380 | MtrunA17_Chr3g0092881 | 58.571 | 70 | 28 | 1 | 1 | 69 | 1 | 70 | 6.53e-19 | 75.9 |
Msa0449380 | MtrunA17_Chr3g0092701 | 59.677 | 62 | 25 | 0 | 1 | 62 | 1 | 62 | 2.08e-18 | 74.3 |
Msa0449380 | MtrunA17_Chr3g0092841 | 58.571 | 70 | 28 | 1 | 1 | 69 | 1 | 70 | 2.24e-18 | 74.3 |
Msa0449380 | MtrunA17_Chr3g0092801 | 58.571 | 70 | 28 | 1 | 1 | 69 | 1 | 70 | 2.24e-18 | 74.3 |
Msa0449380 | MtrunA17_Chr7g0225821 | 35.714 | 126 | 73 | 5 | 1 | 124 | 1 | 120 | 3.41e-18 | 75.5 |
Msa0449380 | MtrunA17_Chr3g0092851 | 58.730 | 63 | 24 | 2 | 1 | 61 | 1 | 63 | 9.04e-18 | 72.8 |
Msa0449380 | MtrunA17_Chr3g0092704 | 70.833 | 48 | 14 | 0 | 1 | 48 | 1 | 48 | 3.91e-17 | 71.6 |
Msa0449380 | MtrunA17_Chr3g0111711 | 40.496 | 121 | 56 | 5 | 1 | 117 | 1 | 109 | 9.52e-17 | 71.2 |
Msa0449380 | MtrunA17_Chr8g0359071 | 41.237 | 97 | 41 | 4 | 50 | 144 | 47 | 129 | 1.49e-16 | 71.6 |
Msa0449380 | MtrunA17_Chr3g0092901 | 61.404 | 57 | 21 | 1 | 1 | 57 | 1 | 56 | 1.02e-15 | 67.4 |
Msa0449380 | MtrunA17_Chr3g0090581 | 63.265 | 49 | 18 | 0 | 21 | 69 | 22 | 70 | 2.86e-15 | 66.6 |
Msa0449380 | MtrunA17_Chr3g0111201 | 46.032 | 63 | 23 | 1 | 88 | 150 | 3 | 54 | 9.15e-13 | 59.7 |
Msa0449380 | MtrunA17_Chr3g0092771 | 84.848 | 33 | 5 | 0 | 1 | 33 | 1 | 33 | 3.87e-12 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 36 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAATACTGATATTGAATA+TGG | 0.265217 | 3_3:-32636534 | Msa0449380:CDS |
TTTGTTTCCAATTGATCAAT+TGG | 0.321512 | 3_3:-32636299 | Msa0449380:three_prime_UTR |
CCATATTCAATATCAGTATT+AGG | 0.339302 | 3_3:+32636534 | None:intergenic |
ATGTGATTACCGCAATAATT+CGG | 0.350576 | 3_3:+32636714 | None:intergenic |
AAGAAATCCAATTGATCAAT+TGG | 0.360164 | 3_3:+32636292 | None:intergenic |
TTATGTTAAGCTTGCTACTT+TGG | 0.363249 | 3_3:-32637046 | Msa0449380:CDS |
AGATTGTCGTTGTCTCCCTT+GGG | 0.366327 | 3_3:-32636691 | Msa0449380:CDS |
CTGCTTCAACGTTCTTCGTC+TGG | 0.376847 | 3_3:+32636778 | None:intergenic |
TAGATTGTCGTTGTCTCCCT+TGG | 0.381393 | 3_3:-32636692 | Msa0449380:CDS |
AGACTACTTGAAGATGGCTT+TGG | 0.386657 | 3_3:-32636409 | Msa0449380:CDS |
GCAGAACGTTACTTCAAGAT+TGG | 0.399752 | 3_3:-32636486 | Msa0449380:CDS |
ATTGATCAATTGGATTTCTT+CGG | 0.409409 | 3_3:-32636289 | Msa0449380:three_prime_UTR |
TGTGATTACCGCAATAATTC+GGG | 0.413325 | 3_3:+32636715 | None:intergenic |
CGAGACATATCATTCTTAAG+TGG | 0.433054 | 3_3:+32636380 | None:intergenic |
CCGCAATAATTCGGGTCAAA+TGG | 0.448213 | 3_3:+32636723 | None:intergenic |
GGTACTTGCATAAATCCAAC+TGG | 0.464601 | 3_3:-32636657 | Msa0449380:CDS |
CGGGTCAAATGGTGAACAAA+AGG | 0.469881 | 3_3:+32636734 | None:intergenic |
TCTTCGGTATGTATTGTGCA+TGG | 0.484118 | 3_3:-32636273 | Msa0449380:three_prime_UTR |
CTTCGGTATGTATTGTGCAT+GGG | 0.523431 | 3_3:-32636272 | Msa0449380:three_prime_UTR |
ATATTATGTTCAGAACCAGT+TGG | 0.526174 | 3_3:+32636642 | None:intergenic |
GCAGCGAGCTGTCCGTATGC+AGG | 0.535912 | 3_3:-32636759 | Msa0449380:CDS |
AATTGATCAATTGGAAACAA+AGG | 0.536616 | 3_3:+32636301 | None:intergenic |
ACTTCCCTTCTTGATGCACT+CGG | 0.557306 | 3_3:+32636578 | None:intergenic |
TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3_3:-32636583 | Msa0449380:CDS |
GATTGTCGTTGTCTCCCTTG+GGG | 0.563111 | 3_3:-32636690 | Msa0449380:CDS |
CGTTCTGCTTCATTTACAGA+GGG | 0.566815 | 3_3:+32636501 | None:intergenic |
CCATTTGACCCGAATTATTG+CGG | 0.576067 | 3_3:-32636723 | Msa0449380:CDS |
GAACAAAAGGAACCTGCATA+CGG | 0.576509 | 3_3:+32636747 | None:intergenic |
ATTGTCGTTGTCTCCCTTGG+GGG | 0.580929 | 3_3:-32636689 | Msa0449380:CDS |
TACAGAATGTGGTGAGCATG+AGG | 0.609081 | 3_3:+32637019 | None:intergenic |
CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3_3:-32636582 | Msa0449380:CDS |
ACGTTCTGCTTCATTTACAG+AGG | 0.626101 | 3_3:+32636500 | None:intergenic |
ATACTGATATTGAATATGGA+TGG | 0.651010 | 3_3:-32636530 | Msa0449380:CDS |
CATGCACATGATAACATGCA+TGG | 0.677543 | 3_3:+32636222 | None:intergenic |
ACATAATATGAAGATGATCG+AGG | 0.692790 | 3_3:-32636628 | Msa0449380:CDS |
TAGATGCATGATAACATGCA+TGG | 0.728301 | 3_3:+32636342 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCGATATATATTTATATGTT+AGG | - | chr3_3:32636379-32636398 | Msa0449380:exon | 15.0% |
!! | TGAATATAACGTATATATTT+AGG | + | chr3_3:32636490-32636509 | None:intergenic | 15.0% |
!! | TCGATATATATTTATATGTT+AGG | - | chr3_3:32636379-32636398 | Msa0449380:exon | 15.0% |
!! | TGAATATAACGTATATATTT+AGG | + | chr3_3:32636490-32636509 | None:intergenic | 15.0% |
!! | AAAAATATACATACAGAATG+TGG | + | chr3_3:32636335-32636354 | None:intergenic | 20.0% |
!! | AAAAATATACATACAGAATG+TGG | + | chr3_3:32636335-32636354 | None:intergenic | 20.0% |
! | CGTATATATTTAGGAAAGTT+TGG | + | chr3_3:32636481-32636500 | None:intergenic | 25.0% |
! | TTATATTCACACATGTGTAT+TGG | - | chr3_3:32636501-32636520 | Msa0449380:CDS | 25.0% |
! | CCATATTCAATATCAGTATT+AGG | + | chr3_3:32636809-32636828 | None:intergenic | 25.0% |
! | CCTAATACTGATATTGAATA+TGG | - | chr3_3:32636806-32636825 | Msa0449380:intron | 25.0% |
! | ATACTGATATTGAATATGGA+TGG | - | chr3_3:32636810-32636829 | Msa0449380:intron | 25.0% |
!! | TGAAGAAAGTTTTTACTACA+GGG | + | chr3_3:32636886-32636905 | None:intergenic | 25.0% |
!! | TTGAAGAAAGTTTTTACTAC+AGG | + | chr3_3:32636887-32636906 | None:intergenic | 25.0% |
! | AATTGATCAATTGGAAACAA+AGG | + | chr3_3:32637042-32637061 | None:intergenic | 25.0% |
! | TTTGTTTCCAATTGATCAAT+TGG | - | chr3_3:32637041-32637060 | Msa0449380:CDS | 25.0% |
! | AAGAAATCCAATTGATCAAT+TGG | + | chr3_3:32637051-32637070 | None:intergenic | 25.0% |
! | ATTGATCAATTGGATTTCTT+CGG | - | chr3_3:32637051-32637070 | Msa0449380:CDS | 25.0% |
! | CGTATATATTTAGGAAAGTT+TGG | + | chr3_3:32636481-32636500 | None:intergenic | 25.0% |
! | TTATATTCACACATGTGTAT+TGG | - | chr3_3:32636501-32636520 | Msa0449380:CDS | 25.0% |
! | CCATATTCAATATCAGTATT+AGG | + | chr3_3:32636809-32636828 | None:intergenic | 25.0% |
! | CCTAATACTGATATTGAATA+TGG | - | chr3_3:32636806-32636825 | Msa0449380:intron | 25.0% |
! | ATACTGATATTGAATATGGA+TGG | - | chr3_3:32636810-32636829 | Msa0449380:intron | 25.0% |
!! | TGAAGAAAGTTTTTACTACA+GGG | + | chr3_3:32636886-32636905 | None:intergenic | 25.0% |
!! | TTGAAGAAAGTTTTTACTAC+AGG | + | chr3_3:32636887-32636906 | None:intergenic | 25.0% |
! | AATTGATCAATTGGAAACAA+AGG | + | chr3_3:32637042-32637061 | None:intergenic | 25.0% |
! | TTTGTTTCCAATTGATCAAT+TGG | - | chr3_3:32637041-32637060 | Msa0449380:CDS | 25.0% |
! | AAGAAATCCAATTGATCAAT+TGG | + | chr3_3:32637051-32637070 | None:intergenic | 25.0% |
! | ATTGATCAATTGGATTTCTT+CGG | - | chr3_3:32637051-32637070 | Msa0449380:CDS | 25.0% |
!! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32636294-32636313 | Msa0449380:three_prime_UTR | 30.0% |
ATGTGATTACCGCAATAATT+CGG | + | chr3_3:32636629-32636648 | None:intergenic | 30.0% | |
ATATTATGTTCAGAACCAGT+TGG | + | chr3_3:32636701-32636720 | None:intergenic | 30.0% | |
ACATAATATGAAGATGATCG+AGG | - | chr3_3:32636712-32636731 | Msa0449380:CDS | 30.0% | |
!! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32636915-32636934 | None:intergenic | 30.0% |
TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32636925-32636944 | Msa0449380:intron | 30.0% | |
!! | TTATGTTAAGCTTGCTACTT+TGG | - | chr3_3:32636294-32636313 | Msa0449380:three_prime_UTR | 30.0% |
ATGTGATTACCGCAATAATT+CGG | + | chr3_3:32636629-32636648 | None:intergenic | 30.0% | |
ATATTATGTTCAGAACCAGT+TGG | + | chr3_3:32636701-32636720 | None:intergenic | 30.0% | |
ACATAATATGAAGATGATCG+AGG | - | chr3_3:32636712-32636731 | Msa0449380:CDS | 30.0% | |
!! | GTCTTTTTCATTAGAGTTTG+AGG | + | chr3_3:32636915-32636934 | None:intergenic | 30.0% |
TGAAAAAGACTACTTGAAGA+TGG | - | chr3_3:32636925-32636944 | Msa0449380:intron | 30.0% | |
ATGGCAAAGGCAGTTAAAAT+TGG | + | chr3_3:32636529-32636548 | None:intergenic | 35.0% | |
TGTGATTACCGCAATAATTC+GGG | + | chr3_3:32636628-32636647 | None:intergenic | 35.0% | |
TACCAAAAAATAACCCCCAA+GGG | + | chr3_3:32636667-32636686 | None:intergenic | 35.0% | |
! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32636743-32636762 | None:intergenic | 35.0% |
! | GAAAGTTTTTACTACAGGGT+TGG | + | chr3_3:32636882-32636901 | None:intergenic | 35.0% |
CGAGACATATCATTCTTAAG+TGG | + | chr3_3:32636963-32636982 | None:intergenic | 35.0% | |
TAGATGCATGATAACATGCA+TGG | + | chr3_3:32637001-32637020 | None:intergenic | 35.0% | |
ATGGCAAAGGCAGTTAAAAT+TGG | + | chr3_3:32636529-32636548 | None:intergenic | 35.0% | |
TGTGATTACCGCAATAATTC+GGG | + | chr3_3:32636628-32636647 | None:intergenic | 35.0% | |
TACCAAAAAATAACCCCCAA+GGG | + | chr3_3:32636667-32636686 | None:intergenic | 35.0% | |
! | GCATGAGTTTTGCATAAGTT+AGG | + | chr3_3:32636743-32636762 | None:intergenic | 35.0% |
! | GAAAGTTTTTACTACAGGGT+TGG | + | chr3_3:32636882-32636901 | None:intergenic | 35.0% |
CGAGACATATCATTCTTAAG+TGG | + | chr3_3:32636963-32636982 | None:intergenic | 35.0% | |
TAGATGCATGATAACATGCA+TGG | + | chr3_3:32637001-32637020 | None:intergenic | 35.0% | |
ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32636542-32636561 | None:intergenic | 40.0% | |
GAACAAAAGGAACCTGCATA+CGG | + | chr3_3:32636596-32636615 | None:intergenic | 40.0% | |
CCATTTGACCCGAATTATTG+CGG | - | chr3_3:32636617-32636636 | Msa0449380:CDS | 40.0% | |
GTACCAAAAAATAACCCCCA+AGG | + | chr3_3:32636668-32636687 | None:intergenic | 40.0% | |
GGTACTTGCATAAATCCAAC+TGG | - | chr3_3:32636683-32636702 | Msa0449380:CDS | 40.0% | |
CGTTCTGCTTCATTTACAGA+GGG | + | chr3_3:32636842-32636861 | None:intergenic | 40.0% | |
ACGTTCTGCTTCATTTACAG+AGG | + | chr3_3:32636843-32636862 | None:intergenic | 40.0% | |
GCAGAACGTTACTTCAAGAT+TGG | - | chr3_3:32636854-32636873 | Msa0449380:intron | 40.0% | |
AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32636931-32636950 | Msa0449380:intron | 40.0% | |
TCTTCGGTATGTATTGTGCA+TGG | - | chr3_3:32637067-32637086 | Msa0449380:exon | 40.0% | |
CTTCGGTATGTATTGTGCAT+GGG | - | chr3_3:32637068-32637087 | Msa0449380:exon | 40.0% | |
ACGATTACTGCAAATGGCAA+AGG | + | chr3_3:32636542-32636561 | None:intergenic | 40.0% | |
GAACAAAAGGAACCTGCATA+CGG | + | chr3_3:32636596-32636615 | None:intergenic | 40.0% | |
CCATTTGACCCGAATTATTG+CGG | - | chr3_3:32636617-32636636 | Msa0449380:CDS | 40.0% | |
GTACCAAAAAATAACCCCCA+AGG | + | chr3_3:32636668-32636687 | None:intergenic | 40.0% | |
GGTACTTGCATAAATCCAAC+TGG | - | chr3_3:32636683-32636702 | Msa0449380:CDS | 40.0% | |
CGTTCTGCTTCATTTACAGA+GGG | + | chr3_3:32636842-32636861 | None:intergenic | 40.0% | |
ACGTTCTGCTTCATTTACAG+AGG | + | chr3_3:32636843-32636862 | None:intergenic | 40.0% | |
GCAGAACGTTACTTCAAGAT+TGG | - | chr3_3:32636854-32636873 | Msa0449380:intron | 40.0% | |
AGACTACTTGAAGATGGCTT+TGG | - | chr3_3:32636931-32636950 | Msa0449380:intron | 40.0% | |
TCTTCGGTATGTATTGTGCA+TGG | - | chr3_3:32637067-32637086 | Msa0449380:exon | 40.0% | |
CTTCGGTATGTATTGTGCAT+GGG | - | chr3_3:32637068-32637087 | Msa0449380:exon | 40.0% | |
TACAGAATGTGGTGAGCATG+AGG | + | chr3_3:32636324-32636343 | None:intergenic | 45.0% | |
GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32636548-32636567 | None:intergenic | 45.0% | |
CGGGTCAAATGGTGAACAAA+AGG | + | chr3_3:32636609-32636628 | None:intergenic | 45.0% | |
CCGCAATAATTCGGGTCAAA+TGG | + | chr3_3:32636620-32636639 | None:intergenic | 45.0% | |
TAGATTGTCGTTGTCTCCCT+TGG | - | chr3_3:32636648-32636667 | Msa0449380:CDS | 45.0% | |
AGATTGTCGTTGTCTCCCTT+GGG | - | chr3_3:32636649-32636668 | Msa0449380:CDS | 45.0% | |
!!! | CTCCCTTGGGGGTTATTTTT+TGG | - | chr3_3:32636662-32636681 | Msa0449380:CDS | 45.0% |
ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32636765-32636784 | None:intergenic | 45.0% | |
TACAGAATGTGGTGAGCATG+AGG | + | chr3_3:32636324-32636343 | None:intergenic | 45.0% | |
GTCTGGACGATTACTGCAAA+TGG | + | chr3_3:32636548-32636567 | None:intergenic | 45.0% | |
CGGGTCAAATGGTGAACAAA+AGG | + | chr3_3:32636609-32636628 | None:intergenic | 45.0% | |
CCGCAATAATTCGGGTCAAA+TGG | + | chr3_3:32636620-32636639 | None:intergenic | 45.0% | |
TAGATTGTCGTTGTCTCCCT+TGG | - | chr3_3:32636648-32636667 | Msa0449380:CDS | 45.0% | |
AGATTGTCGTTGTCTCCCTT+GGG | - | chr3_3:32636649-32636668 | Msa0449380:CDS | 45.0% | |
!!! | CTCCCTTGGGGGTTATTTTT+TGG | - | chr3_3:32636662-32636681 | Msa0449380:CDS | 45.0% |
ACTTCCCTTCTTGATGCACT+CGG | + | chr3_3:32636765-32636784 | None:intergenic | 45.0% | |
CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32636565-32636584 | None:intergenic | 50.0% | |
GATTGTCGTTGTCTCCCTTG+GGG | - | chr3_3:32636650-32636669 | Msa0449380:CDS | 50.0% | |
ATTGTCGTTGTCTCCCTTGG+GGG | - | chr3_3:32636651-32636670 | Msa0449380:CDS | 50.0% | |
TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32636757-32636776 | Msa0449380:CDS | 50.0% | |
CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32636758-32636777 | Msa0449380:CDS | 50.0% | |
CTGCTTCAACGTTCTTCGTC+TGG | + | chr3_3:32636565-32636584 | None:intergenic | 50.0% | |
GATTGTCGTTGTCTCCCTTG+GGG | - | chr3_3:32636650-32636669 | Msa0449380:CDS | 50.0% | |
ATTGTCGTTGTCTCCCTTGG+GGG | - | chr3_3:32636651-32636670 | Msa0449380:CDS | 50.0% | |
TCATGCCGAGTGCATCAAGA+AGG | - | chr3_3:32636757-32636776 | Msa0449380:CDS | 50.0% | |
CATGCCGAGTGCATCAAGAA+GGG | - | chr3_3:32636758-32636777 | Msa0449380:CDS | 50.0% | |
GCAGCGAGCTGTCCGTATGC+AGG | - | chr3_3:32636581-32636600 | Msa0449380:CDS | 65.0% | |
GCAGCGAGCTGTCCGTATGC+AGG | - | chr3_3:32636581-32636600 | Msa0449380:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 32636230 | 32637132 | 32636230 | ID=Msa0449380;Name=Msa0449380 |
chr3_3 | mRNA | 32636230 | 32637132 | 32636230 | ID=Msa0449380-mRNA-1;Parent=Msa0449380;Name=Msa0449380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|2|165|154 |
chr3_3 | exon | 32636230 | 32636807 | 32636230 | ID=Msa0449380-mRNA-1:exon:5920;Parent=Msa0449380-mRNA-1 |
chr3_3 | exon | 32637022 | 32637132 | 32637022 | ID=Msa0449380-mRNA-1:exon:5919;Parent=Msa0449380-mRNA-1 |
chr3_3 | five_prime_UTR | 32637074 | 32637132 | 32637074 | ID=Msa0449380-mRNA-1:five_prime_utr;Parent=Msa0449380-mRNA-1 |
chr3_3 | CDS | 32637022 | 32637073 | 32637022 | ID=Msa0449380-mRNA-1:cds;Parent=Msa0449380-mRNA-1 |
chr3_3 | CDS | 32636395 | 32636807 | 32636395 | ID=Msa0449380-mRNA-1:cds;Parent=Msa0449380-mRNA-1 |
chr3_3 | three_prime_UTR | 32636230 | 32636394 | 32636230 | ID=Msa0449380-mRNA-1:three_prime_utr;Parent=Msa0449380-mRNA-1 |
Gene Sequence |
Protein sequence |