AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684150 MtrunA17_Chr4g0031521 98.039 714 4 3 1 714 1 704 0.0 1429
Msa0684150 MtrunA17_Chr4g0054811 39.074 842 315 22 1 712 1 774 1.48e-164 493
Msa0684150 MtrunA17_Chr7g0238501 57.049 305 92 3 410 714 290 555 5.74e-111 347
Msa0684150 MtrunA17_Chr7g0238501 31.250 368 183 9 1 349 1 317 4.18e-38 149
Msa0684150 MtrunA17_Chr1g0193691 51.786 336 139 2 400 712 555 890 1.27e-109 353
Msa0684150 MtrunA17_Chr1g0193691 35.000 500 224 18 1 446 1 453 1.55e-60 219
Msa0684150 MtrunA17_Chr4g0039061 58.140 301 88 3 414 714 229 491 3.48e-109 340
Msa0684150 MtrunA17_Chr4g0039061 67.188 64 21 0 262 325 173 236 5.88e-23 103
Msa0684150 MtrunA17_Chr4g0067301 40.809 272 133 1 434 705 244 487 3.67e-62 216
Msa0684150 MtrunA17_Chr4g0067301 49.254 67 34 0 259 325 132 198 3.26e-12 69.7
Msa0684150 MtrunA17_Chr2g0295991 40.074 272 133 2 434 705 235 476 4.22e-60 210
Msa0684150 MtrunA17_Chr2g0295991 47.945 73 38 0 262 334 137 209 9.97e-14 74.3
Msa0684150 MtrunA17_Chr8g0371321 31.786 280 149 5 435 709 115 357 2.44e-36 141
Msa0684150 MtrunA17_Chr1g0213351 31.228 285 154 5 427 706 108 355 4.24e-36 140
Msa0684150 MtrunA17_Chr1g0181901 30.693 303 147 6 437 709 114 383 5.52e-33 131
Msa0684150 MtrunA17_Chr3g0089691 32.192 292 140 11 430 706 13 261 3.11e-31 124
Msa0684150 MtrunA17_Chr7g0263281 30.824 279 151 6 436 709 108 349 4.82e-31 125
Msa0684150 MtrunA17_Chr7g0250061 28.214 280 159 5 435 709 112 354 1.99e-30 124
Msa0684150 MtrunA17_Chr3g0089711 31.849 292 141 11 430 706 99 347 2.30e-30 123
Msa0684150 MtrunA17_Chr3g0089721 31.849 292 141 11 430 706 99 347 2.54e-30 123
Msa0684150 MtrunA17_Chr1g0211251 28.929 280 157 5 435 709 117 359 7.04e-29 119
Msa0684150 MtrunA17_Chr7g0223641 30.588 255 108 6 459 705 3 196 1.61e-28 113
Msa0684150 MtrunA17_Chr2g0294291 27.636 275 157 5 436 705 113 350 3.54e-28 117
Msa0684150 MtrunA17_Chr1g0207571 30.686 277 150 7 436 706 98 338 8.88e-28 115
Msa0684150 MtrunA17_Chr1g0175381 27.208 283 161 8 438 714 118 361 9.94e-26 110
Msa0684150 MtrunA17_Chr7g0256751 31.834 289 139 10 430 703 100 345 3.53e-25 109
Msa0684150 MtrunA17_Chr7g0256771 30.705 241 114 8 419 649 95 292 1.14e-19 90.5
Msa0684150 MtrunA17_Chr4g0063051 27.165 254 123 8 459 710 120 313 4.60e-17 83.2
Msa0684150 MtrunA17_Chr7g0256761 29.891 184 103 7 535 710 20 185 4.17e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684150 AT1G07630.1 67.956 724 160 15 1 714 1 662 0.0 929
Msa0684150 AT2G28890.1 68.239 721 155 15 1 714 1 654 0.0 921
Msa0684150 AT5G02400.1 49.651 717 277 19 19 714 21 674 0.0 610
Msa0684150 AT3G09400.1 47.885 733 280 17 1 714 1 650 0.0 563
Msa0684150 AT3G09400.2 45.690 696 276 17 1 677 1 613 1.09e-165 491
Msa0684150 AT2G46920.3 47.970 394 158 9 358 712 457 842 2.08e-107 347
Msa0684150 AT2G46920.3 37.528 445 173 14 1 377 1 408 2.89e-68 241
Msa0684150 AT2G46920.1 47.970 394 158 9 358 712 457 842 2.08e-107 347
Msa0684150 AT2G46920.1 37.528 445 173 14 1 377 1 408 2.89e-68 241
Msa0684150 AT2G46920.2 47.970 394 158 9 358 712 457 842 2.08e-107 347
Msa0684150 AT2G46920.2 37.528 445 173 14 1 377 1 408 2.89e-68 241
Msa0684150 AT2G46920.4 47.970 394 158 9 358 712 457 842 2.08e-107 347
Msa0684150 AT2G46920.4 37.528 445 173 14 1 377 1 408 2.89e-68 241
Msa0684150 AT2G35350.1 53.605 319 118 7 411 712 473 778 3.45e-102 331
Msa0684150 AT2G35350.1 33.763 388 144 15 1 332 1 331 4.36e-39 155
Msa0684150 AT3G16560.1 37.821 312 156 3 394 705 207 480 8.99e-65 223
Msa0684150 AT3G16560.1 47.297 74 39 0 249 322 133 206 1.89e-12 70.9
Msa0684150 AT3G16560.4 37.821 312 156 3 394 705 207 480 8.99e-65 223
Msa0684150 AT3G16560.4 47.297 74 39 0 249 322 133 206 1.89e-12 70.9
Msa0684150 AT3G16560.2 37.821 312 156 3 394 705 207 480 8.99e-65 223
Msa0684150 AT3G16560.2 47.297 74 39 0 249 322 133 206 1.89e-12 70.9
Msa0684150 AT3G16560.3 35.915 284 144 3 394 677 207 452 9.24e-52 186
Msa0684150 AT3G16560.3 47.297 74 39 0 249 322 133 206 1.82e-12 70.5
Msa0684150 AT3G55050.1 31.541 279 145 6 436 707 121 360 1.01e-34 136
Msa0684150 AT3G55050.2 31.541 279 145 6 436 707 121 360 1.01e-34 136
Msa0684150 AT3G12620.2 30.208 288 159 5 427 709 111 361 1.63e-34 136
Msa0684150 AT3G12620.1 30.208 288 159 5 427 709 111 361 1.63e-34 136
Msa0684150 AT3G51370.2 30.421 309 162 7 408 706 4 269 7.79e-34 132
Msa0684150 AT3G17090.1 30.545 275 148 4 436 705 122 358 1.02e-33 134
Msa0684150 AT4G38520.2 31.502 273 145 5 436 703 118 353 2.08e-33 133
Msa0684150 AT4G38520.1 31.502 273 145 5 436 703 118 353 2.08e-33 133
Msa0684150 AT5G66080.2 31.399 293 156 6 419 706 1 253 1.39e-32 127
Msa0684150 AT3G51370.1 30.325 277 151 4 435 706 115 354 1.72e-32 130
Msa0684150 AT3G51370.3 30.325 277 151 4 435 706 115 354 1.72e-32 130
Msa0684150 AT5G66080.1 31.769 277 147 5 435 706 118 357 6.31e-32 128
Msa0684150 AT5G02760.1 32.000 275 143 5 436 705 109 344 3.29e-30 123
Msa0684150 AT4G33920.2 29.603 277 156 5 435 706 14 256 1.04e-29 120
Msa0684150 AT4G33920.1 29.603 277 156 5 435 706 97 339 2.87e-29 120
Msa0684150 AT5G06750.2 29.032 279 159 5 436 709 37 281 7.57e-29 117
Msa0684150 AT5G06750.3 29.032 279 159 5 436 709 119 363 1.53e-28 119
Msa0684150 AT5G06750.1 29.032 279 159 5 436 709 119 363 1.53e-28 119
Msa0684150 AT4G33920.3 31.076 251 134 5 461 706 10 226 7.33e-27 110
Msa0684150 AT3G17090.2 31.050 219 112 3 436 649 122 306 1.19e-24 105

Find 204 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCCGGAACTTGCTTTAA+TGG 0.204565 4_4:-47463925 Msa0684150:CDS
ACGGTTACTGTTGTTGTTTC+CGG 0.205809 4_4:+47465264 None:intergenic
GTTGGTGGCGGTGGTGGTGG+TGG 0.225164 4_4:-47464935 Msa0684150:CDS
GCCGTTATCGACGGCGTTTA+TGG 0.251714 4_4:-47465071 Msa0684150:CDS
CGGGAAAATTAGACAGGATT+TGG 0.261202 4_4:-47463796 Msa0684150:CDS
CAAGTGGAACAATGCACTTC+TGG 0.269345 4_4:-47462923 Msa0684150:CDS
TAAAGGATCCGTTATTAATA+TGG 0.281615 4_4:+47465228 None:intergenic
TTTGTTATGGGAAACAAAAT+AGG 0.293503 4_4:-47465307 Msa0684150:exon
TGTTAATCATTCAGATGTTT+TGG 0.294451 4_4:-47464018 Msa0684150:CDS
GGTGTTGGTGGCGGTGGTGG+TGG 0.308599 4_4:-47464938 Msa0684150:CDS
TACGATGATGATATAATATA+TGG 0.309864 4_4:+47462424 None:intergenic
TTTGTTCATAAGGAGCTTAA+AGG 0.334724 4_4:-47464362 Msa0684150:CDS
AGCTTCTCTCATAGTGGATT+AGG 0.335621 4_4:-47464767 Msa0684150:CDS
ATATGGATATGTCGTGTTTA+CGG 0.335656 4_4:+47465245 None:intergenic
AAAGGGTTGCTTTGGGATGA+TGG 0.341522 4_4:-47464344 Msa0684150:CDS
TTTGAGTAGTGAAGGTAGTT+TGG 0.342225 4_4:-47464555 Msa0684150:CDS
AGGAGCTTAAAGGGTTGCTT+TGG 0.344311 4_4:-47464352 Msa0684150:CDS
AATCCGGAACTTGCTTTAAT+GGG 0.351962 4_4:-47463924 Msa0684150:CDS
GGTGGTGGGTTTCCGAGTTC+CGG 0.357726 4_4:-47464920 Msa0684150:CDS
GTTGATGATGATGTTGTTGA+TGG 0.361250 4_4:-47464281 Msa0684150:CDS
TGTTGAGCAGGGTCTCCTTC+AGG 0.362431 4_4:+47462724 None:intergenic
CTCAAGGTCACTCGAGCATT+TGG 0.362642 4_4:-47463493 Msa0684150:CDS
TTCTATCATTGTTATTTCTC+TGG 0.367133 4_4:-47462494 Msa0684150:CDS
CAGAAGTGCATTGTTCCACT+TGG 0.376775 4_4:+47462924 None:intergenic
AAGGGTTGCTTTGGGATGAT+GGG 0.382657 4_4:-47464343 Msa0684150:CDS
TTTCTCTGGAAGGAAGGATA+TGG 0.384226 4_4:-47462480 Msa0684150:CDS
GGTGGTGTTGGTGGCGGTGG+TGG 0.392214 4_4:-47464941 Msa0684150:CDS
TAGTTCTTGTTCCTAGTACT+TGG 0.392726 4_4:-47465390 Msa0684150:five_prime_UTR
GAATTTGAAACCGCGTGATT+CGG 0.400287 4_4:-47464303 Msa0684150:CDS
GAAAATAAACCACGATCAAT+CGG 0.401422 4_4:+47464842 None:intergenic
CCCGATCCAATAATCAGGTT+CGG 0.403582 4_4:+47463815 None:intergenic
TTGTTCATAAGGAGCTTAAA+GGG 0.406793 4_4:-47464361 Msa0684150:CDS
TCGAAATTCCTCAAGGTGAT+AGG 0.409589 4_4:-47462537 Msa0684150:CDS
GAAGATAAACGGGTCGGGTC+GGG 0.411687 4_4:+47465169 None:intergenic
TTTGGTGGTGTTGGTGGCGG+TGG 0.411835 4_4:-47464944 Msa0684150:CDS
TATAATAATAAACAAAATCC+AGG 0.412450 4_4:+47462159 None:intergenic
AGGAGACCCTGCTCAACATT+TGG 0.412890 4_4:-47462719 Msa0684150:CDS
CCACCGGAGTGGATTCTTGC+TGG 0.414509 4_4:-47464617 Msa0684150:CDS
TTGGTGGCGGTGGTGGTGGT+GGG 0.416670 4_4:-47464934 Msa0684150:CDS
ACCAACACCACCAAAGTTAC+CGG 0.416921 4_4:+47464952 None:intergenic
TCCATAAACGCCGTCGATAA+CGG 0.418450 4_4:+47465070 None:intergenic
GAACTTTGGAAGAAGATAAA+CGG 0.420518 4_4:+47465158 None:intergenic
GAAGACTCTGTCACGTGGAC+AGG 0.422051 4_4:-47464681 Msa0684150:CDS
TTCTATTGTTACTCCGATCA+AGG 0.425074 4_4:-47464657 Msa0684150:CDS
AAAGGAGATGGAAGTGTGAA+TGG 0.425538 4_4:-47464112 Msa0684150:CDS
AATCTGTGGTGTTTAAGATA+TGG 0.429109 4_4:+47462850 None:intergenic
AAAATTTACCTCTTCAACAT+TGG 0.430146 4_4:+47463665 None:intergenic
GAACCCATTAAAGCAAGTTC+CGG 0.431709 4_4:+47463921 None:intergenic
GATGGAAGTGTGAATGGGAT+AGG 0.433001 4_4:-47464106 Msa0684150:CDS
AAGCTCTTTCGCGAGCTTTG+AGG 0.433880 4_4:-47463995 Msa0684150:CDS
GGAGCTTAAAGGGTTGCTTT+GGG 0.434258 4_4:-47464351 Msa0684150:CDS
AACAAATAATCAGGTGCATC+AGG 0.434263 4_4:+47464401 None:intergenic
TTTATGGATTTGTACTCCTA+TGG 0.438692 4_4:-47465055 Msa0684150:CDS
ATTCTCCTCGTGCTTCTTCG+CGG 0.439380 4_4:+47464136 None:intergenic
CGGAGGCGCCGGAGATTGTT+CGG 0.441737 4_4:+47465113 None:intergenic
GACATGAACCCACGCTCAAT+CGG 0.443578 4_4:+47464869 None:intergenic
AACTTTGGTGGTGTTGGTGG+CGG 0.448412 4_4:-47464947 Msa0684150:CDS
CAATGGGCTCAAGGGAAAGC+AGG 0.451112 4_4:-47464500 Msa0684150:CDS
CAATGCATGATCTTGAATCA+TGG 0.452610 4_4:-47463755 Msa0684150:CDS
TCCGGTAACTTTGGTGGTGT+TGG 0.452955 4_4:-47464953 Msa0684150:CDS
ACCACAGCACAAGGATCATC+CGG 0.453223 4_4:+47463538 None:intergenic
AGATTTGACAACAAATAATC+AGG 0.457442 4_4:+47464392 None:intergenic
AGAGCTTGATAGAAGATTGA+AGG 0.459767 4_4:-47464075 Msa0684150:CDS
AACATTGGTACTATGATCCT+TGG 0.463901 4_4:+47463680 None:intergenic
TGGTGCCGGATTTCTCAAAC+AGG 0.467257 4_4:-47463473 Msa0684150:intron
GTGGTCAATGATCGTGTTAA+AGG 0.468792 4_4:-47463520 Msa0684150:CDS
TATCTTAAACACCACAGATT+AGG 0.469227 4_4:-47462847 Msa0684150:CDS
AAACTGATCAACGCCGGTGC+CGG 0.470846 4_4:+47464796 None:intergenic
AACTTTGGAAGAAGATAAAC+GGG 0.472058 4_4:+47465159 None:intergenic
TGTTTCTGAGGAACATGGTT+GGG 0.473614 4_4:-47464456 Msa0684150:CDS
TAAGATGGTGATGGAGAATC+CGG 0.475384 4_4:-47463940 Msa0684150:CDS
TTTGGAAGATGATGATTCGT+TGG 0.476363 4_4:-47464537 Msa0684150:CDS
ATAACGGATCCTTTAGATGA+AGG 0.479407 4_4:-47465220 Msa0684150:CDS
TTCTTGTAATGTTGATGAAA+GGG 0.479413 4_4:-47463893 Msa0684150:CDS
TCTTCGACCAAATGTTGAGC+AGG 0.483562 4_4:+47462712 None:intergenic
AAACAAAATAGGAAAATTAA+CGG 0.488093 4_4:-47465296 Msa0684150:CDS
CAGAGAAGCTTCTCTCATAG+TGG 0.489328 4_4:-47464773 Msa0684150:CDS
TTGGATCGGGAAAATTAGAC+AGG 0.495460 4_4:-47463802 Msa0684150:CDS
TGGCCAAGTCCTTCATCTAA+AGG 0.496004 4_4:+47465211 None:intergenic
GTCACTCGAGCATTTGGTGC+CGG 0.500697 4_4:-47463487 Msa0684150:CDS
TTGGGATGATGGGGTTTCAT+CGG 0.500864 4_4:-47464333 Msa0684150:CDS
TATGGTTGGCAAGTGATGTA+TGG 0.501140 4_4:+47462868 None:intergenic
AGAAGATAAACGGGTCGGGT+CGG 0.501483 4_4:+47465168 None:intergenic
GGTAACTTTGGTGGTGTTGG+TGG 0.502774 4_4:-47464950 Msa0684150:CDS
AAATTAACGGTATGTTTCAC+CGG 0.503917 4_4:-47465283 Msa0684150:CDS
ACGAACCTGTTTGAGAAATC+CGG 0.503935 4_4:+47463468 None:intergenic
ATTGAGCGTGGGTTCATGTC+CGG 0.505314 4_4:-47464866 Msa0684150:CDS
AGGGTTGCTTTGGGATGATG+GGG 0.507169 4_4:-47464342 Msa0684150:CDS
CGTTGAAGTGTTGGCGCTGA+CGG 0.507965 4_4:+47465093 None:intergenic
GCCGAACCTGATTATTGGAT+CGG 0.509482 4_4:-47463816 Msa0684150:CDS
CCGAACCTGATTATTGGATC+GGG 0.510246 4_4:-47463815 Msa0684150:CDS
AGTTTGAATTTGAGTAGTGA+AGG 0.511209 4_4:-47464563 Msa0684150:CDS
ACAACTTTCCGAACAATCTC+CGG 0.511363 4_4:-47465121 Msa0684150:CDS
CGCTCTAACGGACCGGAACT+CGG 0.513564 4_4:+47464908 None:intergenic
TCCGTTGCAACCGATTCCGA+AGG 0.513883 4_4:-47464981 Msa0684150:CDS
TGATGGTGTTGTTGTGAAAG+AGG 0.514346 4_4:-47464264 Msa0684150:CDS
CGACATATCCATATTAATAA+CGG 0.515144 4_4:-47465236 Msa0684150:CDS
AAGGAGATGGAAGTGTGAAT+GGG 0.515548 4_4:-47464111 Msa0684150:CDS
TCGTTTATATTTAAATTAGG+AGG 0.518447 4_4:-47462229 Msa0684150:three_prime_UTR
TTGTTATTTCTCTGGAAGGA+AGG 0.518834 4_4:-47462486 Msa0684150:CDS
TACTCCGATCAAGGGTGTGC+CGG 0.519255 4_4:-47464648 Msa0684150:CDS
TTAGAGCGTGGGTTCATGTC+CGG 0.519949 4_4:-47464893 Msa0684150:CDS
TTCACCGGCACACCCTTGAT+CGG 0.520030 4_4:+47464644 None:intergenic
CACTCCGGTGGCTCCTTCAC+CGG 0.520356 4_4:+47464629 None:intergenic
GATCAAGGGTGTGCCGGTGA+AGG 0.523754 4_4:-47464642 Msa0684150:CDS
TTGGAAGATGATGATTCGTT+GGG 0.524167 4_4:-47464536 Msa0684150:CDS
CGATAACGGCGTTGAAGTGT+TGG 0.524171 4_4:+47465084 None:intergenic
ATGGAAGTGTGAATGGGATA+GGG 0.524574 4_4:-47464105 Msa0684150:CDS
CAGAATAATAAAAGAGCACC+CGG 0.525412 4_4:-47463557 Msa0684150:CDS
GGTTTCTTCAGAGTGAACTT+TGG 0.525914 4_4:+47465144 None:intergenic
TGGGAAGTCAGAATCTTCAA+TGG 0.526449 4_4:-47464517 Msa0684150:CDS
ATGAATAGAAACCAAGTACT+AGG 0.526919 4_4:+47465379 None:intergenic
AGATGTTTATGTGATGAATG+TGG 0.528272 4_4:-47463868 Msa0684150:CDS
AGAAGCACGAGGAGAATCAA+AGG 0.529931 4_4:-47464130 Msa0684150:CDS
TTTCGCGCTGCAAAGAAAGC+TGG 0.530460 4_4:-47462682 Msa0684150:intron
TGAAGTGTTGGCGCTGACGG+AGG 0.531029 4_4:+47465096 None:intergenic
GTTCCGGTCCGTTAGAGCGT+GGG 0.532224 4_4:-47464904 Msa0684150:CDS
GATGTTTATGTGATGAATGT+GGG 0.533284 4_4:-47463867 Msa0684150:CDS
ATCATTGTTATTTCTCTGGA+AGG 0.534467 4_4:-47462490 Msa0684150:CDS
ATGTCCGGTCCGATTGAGCG+TGG 0.535195 4_4:-47464878 Msa0684150:CDS
CAATGTGTTGATCAAGAGAA+AGG 0.538305 4_4:-47464218 Msa0684150:CDS
AGAAGTGCATTGTTCCACTT+GGG 0.541493 4_4:+47462925 None:intergenic
GATCCTTTAGATGAAGGACT+TGG 0.541766 4_4:-47465214 Msa0684150:CDS
GTTGGCGCTGACGGAGGCGC+CGG 0.543294 4_4:+47465102 None:intergenic
TCTTGATGTTGCGGATAAGA+TGG 0.547525 4_4:-47463955 Msa0684150:CDS
GACATGAACCCACGCTCTAA+CGG 0.550867 4_4:+47464896 None:intergenic
GGGAAGTCAGAATCTTCAAT+GGG 0.550933 4_4:-47464516 Msa0684150:CDS
GCCTTCGGAATCGGTTGCAA+CGG 0.551003 4_4:+47464980 None:intergenic
CACTTCAACGCCGTTATCGA+CGG 0.551722 4_4:-47465080 Msa0684150:CDS
AGTTCCGGTCCGTTAGAGCG+TGG 0.554284 4_4:-47464905 Msa0684150:CDS
CAGAATCTTCAATGGGCTCA+AGG 0.556444 4_4:-47464509 Msa0684150:CDS
TTCATCACATTACAACCTGA+AGG 0.557463 4_4:-47462739 Msa0684150:CDS
GAGAGAGATTGTGAAGTGAA+TGG 0.558486 4_4:+47465513 None:intergenic
TGGAAGAAGATAAACGGGTC+GGG 0.560735 4_4:+47465164 None:intergenic
ATGATGATATAATATATGGT+TGG 0.563658 4_4:+47462428 None:intergenic
TCTATTGTTACTCCGATCAA+GGG 0.565520 4_4:-47464656 Msa0684150:CDS
GTTCTTGTAATGTTGATGAA+AGG 0.566141 4_4:-47463894 Msa0684150:CDS
GATAAAGATAGCTCCGGCAC+CGG 0.569242 4_4:-47464809 Msa0684150:CDS
CGATCATTGACCACAGCACA+AGG 0.569576 4_4:+47463529 None:intergenic
GGAGATTGTTCGGAAAGTTG+TGG 0.572383 4_4:+47465123 None:intergenic
GTTATTGTTTGCAGCCCAAG+TGG 0.572427 4_4:-47462939 Msa0684150:intron
AATGGGCTCAAGGGAAAGCA+GGG 0.572972 4_4:-47464499 Msa0684150:CDS
TGTCCGGTCCGATTGAGCGT+GGG 0.574442 4_4:-47464877 Msa0684150:CDS
AAATTAGACAGGATTTGGAG+AGG 0.574734 4_4:-47463791 Msa0684150:CDS
GAACCCACGCTCTAACGGAC+CGG 0.575313 4_4:+47464901 None:intergenic
TGTGCCGGTGAAGGAGCCAC+CGG 0.575890 4_4:-47464633 Msa0684150:CDS
TGTTCATGTTGTTGTTTCTG+AGG 0.576807 4_4:-47464468 Msa0684150:CDS
AATGCATGATCTTGAATCAT+GGG 0.577709 4_4:-47463754 Msa0684150:CDS
AGAATCTTCAATGGGCTCAA+GGG 0.581264 4_4:-47464508 Msa0684150:CDS
GTTGTTGTTTCTGAGGAACA+TGG 0.582318 4_4:-47464461 Msa0684150:CDS
CCGGAGCTATCTTTATCCAT+CGG 0.582787 4_4:+47464815 None:intergenic
GAACCCACGCTCAATCGGAC+CGG 0.583850 4_4:+47464874 None:intergenic
TTTCGGTTCGACCAAGATCG+AGG 0.584381 4_4:-47464742 Msa0684150:CDS
AGCTGAAAAGCACTTAAACT+AGG 0.588518 4_4:+47463705 None:intergenic
TTGTTTCTGAGGAACATGGT+TGG 0.588748 4_4:-47464457 Msa0684150:CDS
GGAGTAATTATGTAAATCAG+TGG 0.593753 4_4:-47462208 Msa0684150:three_prime_UTR
GACTGTAAAGTTGTAAACCC+TGG 0.594966 4_4:-47462177 Msa0684150:three_prime_UTR
ACGAGGAGAATCAAAGGAGA+TGG 0.596338 4_4:-47464124 Msa0684150:CDS
TCATAGTACCAATGTTGAAG+AGG 0.597252 4_4:-47463673 Msa0684150:intron
ATGTCCGGTCCGATTGATCG+TGG 0.599187 4_4:-47464851 Msa0684150:CDS
AACATCAAGATAAGACTCCT+CGG 0.601800 4_4:+47463968 None:intergenic
ATGTTTATGTGATGAATGTG+GGG 0.604240 4_4:-47463866 Msa0684150:CDS
TCTTGTAATGTTGATGAAAG+GGG 0.604649 4_4:-47463892 Msa0684150:CDS
AGATTGAAGGAGCAATTAAG+TGG 0.604819 4_4:-47464062 Msa0684150:CDS
TTGGAAGAAGATAAACGGGT+CGG 0.606093 4_4:+47465163 None:intergenic
CTTCGACCAAATGTTGAGCA+GGG 0.606676 4_4:+47462713 None:intergenic
ATAATAATAAACAAAATCCA+GGG 0.607632 4_4:+47462160 None:intergenic
TCGACACTCGTGAATAGCGA+GGG 0.610488 4_4:+47462334 None:intergenic
AAGACTCTGTCACGTGGACA+GGG 0.611869 4_4:-47464680 Msa0684150:CDS
GCTATCTTTATCCATCGGAC+CGG 0.612481 4_4:+47464820 None:intergenic
AGCTCTATCAAAACAACCAT+AGG 0.614007 4_4:+47465039 None:intergenic
GTCTAACGTAACAGAAAGAG+TGG 0.616700 4_4:+47465191 None:intergenic
TGTGGTGTTTAAGATATGGT+TGG 0.627286 4_4:+47462854 None:intergenic
GGAGTCTTATCTTGATGTTG+CGG 0.628468 4_4:-47463964 Msa0684150:CDS
TATGAGATATATGTTGCCGA+AGG 0.630877 4_4:-47462382 Msa0684150:three_prime_UTR
ATGTAAATCAGTGGATAGTG+AGG 0.636520 4_4:-47462199 Msa0684150:three_prime_UTR
CCACAGCACAAGGATCATCC+GGG 0.639725 4_4:+47463539 None:intergenic
CCGATGGATAAAGATAGCTC+CGG 0.640588 4_4:-47464815 Msa0684150:CDS
TAAACCACGATCAATCGGAC+CGG 0.640729 4_4:+47464847 None:intergenic
TCGTGTTAAAGGATCTCTCA+AGG 0.640897 4_4:-47463509 Msa0684150:CDS
CAAGTATTGATAAAGTCCGT+CGG 0.641654 4_4:+47462795 None:intergenic
CCCGGATGATCCTTGTGCTG+TGG 0.641895 4_4:-47463539 Msa0684150:CDS
TGTTGCGGATAAGATGGTGA+TGG 0.644164 4_4:-47463949 Msa0684150:CDS
CTCGACACTCGTGAATAGCG+AGG 0.645488 4_4:+47462333 None:intergenic
ATGAGATATATGTTGCCGAA+GGG 0.647046 4_4:-47462381 Msa0684150:three_prime_UTR
ATGATTAACAGAATTATCGT+CGG 0.649688 4_4:+47464031 None:intergenic
CCAGCAAGAATCCACTCCGG+TGG 0.655460 4_4:+47464617 None:intergenic
GCGAGCTTTGAGGAAAACCG+AGG 0.665283 4_4:-47463985 Msa0684150:CDS
AGATGCCGCGAAGAAGCACG+AGG 0.671726 4_4:-47464141 Msa0684150:CDS
CGGTGAAGGAGCCACCGGAG+TGG 0.673007 4_4:-47464628 Msa0684150:CDS
AAATTCCTCAAGGTGATAGG+CGG 0.674450 4_4:-47462534 Msa0684150:CDS
TAACGCCGCCTATCACCTTG+AGG 0.684250 4_4:+47462529 None:intergenic
GAATTGCTCGAAATTCCTCA+AGG 0.685077 4_4:-47462544 Msa0684150:CDS
ATTTCGAAGACTCTGTCACG+TGG 0.685701 4_4:-47464686 Msa0684150:CDS
TCACCAGCAAGAATCCACTC+CGG 0.688259 4_4:+47464614 None:intergenic
TTGAAGGAGCAATTAAGTGG+CGG 0.690975 4_4:-47464059 Msa0684150:CDS
TCTCTGAAACTGATCAACGC+CGG 0.696982 4_4:+47464790 None:intergenic
CGACACTCGTGAATAGCGAG+GGG 0.698659 4_4:+47462335 None:intergenic
ATGTTTAGAATAGACTACGT+AGG 0.701650 4_4:-47462898 Msa0684150:CDS
CAATGATAGAAACATCGTCG+TGG 0.711744 4_4:+47462506 None:intergenic
ATGGGCTCAAGGGAAAGCAG+GGG 0.712223 4_4:-47464498 Msa0684150:CDS
TCATCATCAACCGAATCACG+CGG 0.743225 4_4:+47464293 None:intergenic
TGTTTATGTGATGAATGTGG+GGG 0.749920 4_4:-47463865 Msa0684150:CDS
GACACTCGTGAATAGCGAGG+GGG 0.766486 4_4:+47462336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTAATTTTTGTTAT+GGG - chr4_4:47462288-47462307 Msa0684150:three_prime_UTR 10.0%
!!! TTTTCGTTTATATTTAAATT+AGG - chr4_4:47465375-47465394 Msa0684150:five_prime_UTR 10.0%
!!! GTGTTTTTTAATTTTTGTTA+TGG - chr4_4:47462287-47462306 Msa0684150:three_prime_UTR 15.0%
!! AAACAAAATAGGAAAATTAA+CGG - chr4_4:47462311-47462330 Msa0684150:three_prime_UTR 15.0%
!!! TTTTTGCTTATATTTAAGTT+CGG + chr4_4:47465313-47465332 None:intergenic 15.0%
!! ATAATAATAAACAAAATCCA+GGG + chr4_4:47465450-47465469 None:intergenic 15.0%
!! TATAATAATAAACAAAATCC+AGG + chr4_4:47465451-47465470 None:intergenic 15.0%
!!! TTTTGTGTTGAAAAATTAGT+GGG + chr4_4:47462139-47462158 None:intergenic 20.0%
!!! TCTTTATAGTTTTGTTCATA+AGG - chr4_4:47463235-47463254 Msa0684150:intron 20.0%
!! ATTTCAAAGAAAAAAAAGAG+AGG - chr4_4:47463419-47463438 Msa0684150:intron 20.0%
!!! ATTAATTTTAAGAAACGCAA+CGG - chr4_4:47464204-47464223 Msa0684150:CDS 20.0%
!! TTATTAATCTTCTACAAGAA+TGG + chr4_4:47464434-47464453 None:intergenic 20.0%
!! AGAAGATTAATAATCACAAA+TGG - chr4_4:47464441-47464460 Msa0684150:CDS 20.0%
!! TTCAAAATCAATTAAGAGTT+AGG + chr4_4:47464477-47464496 None:intergenic 20.0%
!!! TAACATTTGTATTTAGAGTT+AGG + chr4_4:47464652-47464671 None:intergenic 20.0%
!!! GAATCAAAAATTTGTCTTTT+TGG + chr4_4:47464786-47464805 None:intergenic 20.0%
!! TATTCTTCTTAATCTTAATC+AGG - chr4_4:47465027-47465046 Msa0684150:CDS 20.0%
!! ATGATGATATAATATATGGT+TGG + chr4_4:47465182-47465201 None:intergenic 20.0%
!! TACGATGATGATATAATATA+TGG + chr4_4:47465186-47465205 None:intergenic 20.0%
!! TCGTTTATATTTAAATTAGG+AGG - chr4_4:47465378-47465397 Msa0684150:five_prime_UTR 20.0%
!!! ATGAAAAGATTTTTAAGGAA+TGG + chr4_4:47465513-47465532 None:intergenic 20.0%
!! GTTTTGTGTTGAAAAATTAG+TGG + chr4_4:47462140-47462159 None:intergenic 25.0%
!!! ATAACTCGTTTTTCATGTTT+TGG + chr4_4:47462162-47462181 None:intergenic 25.0%
!! GAACTATGAAACAAGTTTTA+AGG + chr4_4:47462203-47462222 None:intergenic 25.0%
!! TTTGTTATGGGAAACAAAAT+AGG - chr4_4:47462300-47462319 Msa0684150:three_prime_UTR 25.0%
! CGACATATCCATATTAATAA+CGG - chr4_4:47462371-47462390 Msa0684150:three_prime_UTR 25.0%
! TAAAGGATCCGTTATTAATA+TGG + chr4_4:47462382-47462401 None:intergenic 25.0%
! AGATTTGACAACAAATAATC+AGG + chr4_4:47463218-47463237 None:intergenic 25.0%
! ATGATTAACAGAATTATCGT+CGG + chr4_4:47463579-47463598 None:intergenic 25.0%
!! TGTTAATCATTCAGATGTTT+TGG - chr4_4:47463589-47463608 Msa0684150:intron 25.0%
!! TTCTTGTAATGTTGATGAAA+GGG - chr4_4:47463714-47463733 Msa0684150:CDS 25.0%
! AAAATTTACCTCTTCAACAT+TGG + chr4_4:47463945-47463964 None:intergenic 25.0%
!! AAGTGTGTGATTTTTATTAC+AGG - chr4_4:47464020-47464039 Msa0684150:CDS 25.0%
! GTTGCGTTTCTTAAAATTAA+TGG + chr4_4:47464205-47464224 None:intergenic 25.0%
! TATCCTATATCTTATCCTTT+CGG + chr4_4:47464327-47464346 None:intergenic 25.0%
! GCAATTGTGAAATCTTAAAA+TGG + chr4_4:47464962-47464981 None:intergenic 25.0%
! TTCTTAATCTTAATCAGGTT+TGG - chr4_4:47465032-47465051 Msa0684150:CDS 25.0%
!!! TTCTATCATTGTTATTTCTC+TGG - chr4_4:47465113-47465132 Msa0684150:CDS 25.0%
ATGAATAGAAACCAAGTACT+AGG + chr4_4:47462231-47462250 None:intergenic 30.0%
AAATTAACGGTATGTTTCAC+CGG - chr4_4:47462324-47462343 Msa0684150:three_prime_UTR 30.0%
ATATGGATATGTCGTGTTTA+CGG + chr4_4:47462365-47462384 None:intergenic 30.0%
! AACTTTGGAAGAAGATAAAC+GGG + chr4_4:47462451-47462470 None:intergenic 30.0%
! GAACTTTGGAAGAAGATAAA+CGG + chr4_4:47462452-47462471 None:intergenic 30.0%
TTTATGGATTTGTACTCCTA+TGG - chr4_4:47462552-47462571 Msa0684150:CDS 30.0%
GAAAATAAACCACGATCAAT+CGG + chr4_4:47462768-47462787 None:intergenic 30.0%
!! ATTGATCGTGGTTTATTTTC+CGG - chr4_4:47462768-47462787 Msa0684150:CDS 30.0%
!!! TCATAGTGGATTAGGTTTTT+CGG - chr4_4:47462848-47462867 Msa0684150:CDS 30.0%
AGTTTGAATTTGAGTAGTGA+AGG - chr4_4:47463044-47463063 Msa0684150:intron 30.0%
! GTTTTTGTTGGGATTTATGA+TGG - chr4_4:47463173-47463192 Msa0684150:intron 30.0%
!!! GGGATTTATGATGGTTTTAA+TGG - chr4_4:47463182-47463201 Msa0684150:intron 30.0%
TTTGTTCATAAGGAGCTTAA+AGG - chr4_4:47463245-47463264 Msa0684150:intron 30.0%
TTGTTCATAAGGAGCTTAAA+GGG - chr4_4:47463246-47463265 Msa0684150:intron 30.0%
! GTTCTTGTAATGTTGATGAA+AGG - chr4_4:47463713-47463732 Msa0684150:CDS 30.0%
! TCTTGTAATGTTGATGAAAG+GGG - chr4_4:47463715-47463734 Msa0684150:CDS 30.0%
AGATGTTTATGTGATGAATG+TGG - chr4_4:47463739-47463758 Msa0684150:CDS 30.0%
GATGTTTATGTGATGAATGT+GGG - chr4_4:47463740-47463759 Msa0684150:CDS 30.0%
ATGTTTATGTGATGAATGTG+GGG - chr4_4:47463741-47463760 Msa0684150:CDS 30.0%
AATGCATGATCTTGAATCAT+GGG - chr4_4:47463853-47463872 Msa0684150:CDS 30.0%
ATATCTTATCCTTTCGGATT+TGG + chr4_4:47464321-47464340 None:intergenic 30.0%
AATCCGAAAGGATAAGATAT+AGG - chr4_4:47464321-47464340 Msa0684150:CDS 30.0%
! ATTTGTTTCTCTTGTCACAA+AGG - chr4_4:47464391-47464410 Msa0684150:CDS 30.0%
TGTCATATTAATGCTAAGCA+TGG - chr4_4:47464500-47464519 Msa0684150:CDS 30.0%
CTAAAAAAAGAAAGCAGAGA+AGG - chr4_4:47464558-47464577 Msa0684150:CDS 30.0%
! ATGTTTAGAATAGACTACGT+AGG - chr4_4:47464709-47464728 Msa0684150:CDS 30.0%
! AATCTGTGGTGTTTAAGATA+TGG + chr4_4:47464760-47464779 None:intergenic 30.0%
TATCTTAAACACCACAGATT+AGG - chr4_4:47464760-47464779 Msa0684150:CDS 30.0%
!! ATCATTGTTATTTCTCTGGA+AGG - chr4_4:47465117-47465136 Msa0684150:CDS 30.0%
GGAGTAATTATGTAAATCAG+TGG - chr4_4:47465399-47465418 Msa0684150:five_prime_UTR 30.0%
TAGTTCTTGTTCCTAGTACT+TGG - chr4_4:47462217-47462236 Msa0684150:three_prime_UTR 35.0%
!! ATAACGGATCCTTTAGATGA+AGG - chr4_4:47462387-47462406 Msa0684150:three_prime_UTR 35.0%
AGCTCTATCAAAACAACCAT+AGG + chr4_4:47462571-47462590 None:intergenic 35.0%
! CATTTTTCTTTCCTCGATCT+TGG + chr4_4:47462879-47462898 None:intergenic 35.0%
CAAGATCGAGGAAAGAAAAA+TGG - chr4_4:47462877-47462896 Msa0684150:CDS 35.0%
TTCTATTGTTACTCCGATCA+AGG - chr4_4:47462950-47462969 Msa0684150:intron 35.0%
TCTATTGTTACTCCGATCAA+GGG - chr4_4:47462951-47462970 Msa0684150:intron 35.0%
TTTGAGTAGTGAAGGTAGTT+TGG - chr4_4:47463052-47463071 Msa0684150:intron 35.0%
TTTGGAAGATGATGATTCGT+TGG - chr4_4:47463070-47463089 Msa0684150:intron 35.0%
TTGGAAGATGATGATTCGTT+GGG - chr4_4:47463071-47463090 Msa0684150:intron 35.0%
!! TGTTCATGTTGTTGTTTCTG+AGG - chr4_4:47463139-47463158 Msa0684150:intron 35.0%
! AACATGGTTGGGTTTTTGTT+GGG - chr4_4:47463162-47463181 Msa0684150:intron 35.0%
AACAAATAATCAGGTGCATC+AGG + chr4_4:47463209-47463228 None:intergenic 35.0%
!! GTTGATGATGATGTTGTTGA+TGG - chr4_4:47463326-47463345 Msa0684150:intron 35.0%
! CAATGTGTTGATCAAGAGAA+AGG - chr4_4:47463389-47463408 Msa0684150:intron 35.0%
AGAGCTTGATAGAAGATTGA+AGG - chr4_4:47463532-47463551 Msa0684150:CDS 35.0%
AGATTGAAGGAGCAATTAAG+TGG - chr4_4:47463545-47463564 Msa0684150:CDS 35.0%
AACATCAAGATAAGACTCCT+CGG + chr4_4:47463642-47463661 None:intergenic 35.0%
! AATCCGGAACTTGCTTTAAT+GGG - chr4_4:47463683-47463702 Msa0684150:CDS 35.0%
TGTTTATGTGATGAATGTGG+GGG - chr4_4:47463742-47463761 Msa0684150:CDS 35.0%
AAAAAGCCGAACCTGATTAT+TGG - chr4_4:47463786-47463805 Msa0684150:CDS 35.0%
! ATTTTCCCGATCCAATAATC+AGG + chr4_4:47463800-47463819 None:intergenic 35.0%
AAATTAGACAGGATTTGGAG+AGG - chr4_4:47463816-47463835 Msa0684150:CDS 35.0%
CAATGCATGATCTTGAATCA+TGG - chr4_4:47463852-47463871 Msa0684150:CDS 35.0%
!! AGCTGAAAAGCACTTAAACT+AGG + chr4_4:47463905-47463924 None:intergenic 35.0%
AACATTGGTACTATGATCCT+TGG + chr4_4:47463930-47463949 None:intergenic 35.0%
TCATAGTACCAATGTTGAAG+AGG - chr4_4:47463934-47463953 Msa0684150:CDS 35.0%
CCAAAACAGAGTCTTAAAAG+AGG + chr4_4:47463970-47463989 None:intergenic 35.0%
!!! CCTCTTTTAAGACTCTGTTT+TGG - chr4_4:47463967-47463986 Msa0684150:CDS 35.0%
!! CAGAATAATAAAAGAGCACC+CGG - chr4_4:47464050-47464069 Msa0684150:CDS 35.0%
!! ATTTTAAGAAACGCAACGGA+AGG - chr4_4:47464208-47464227 Msa0684150:CDS 35.0%
GTGAATGCATGAAATTGTGA+CGG - chr4_4:47464287-47464306 Msa0684150:CDS 35.0%
TTATCCTTTCGGATTTGGAT+TGG + chr4_4:47464316-47464335 None:intergenic 35.0%
TGTGACAAGAGAAACAAATG+TGG + chr4_4:47464390-47464409 None:intergenic 35.0%
CACAAAGGAATACATATGCT+AGG - chr4_4:47464406-47464425 Msa0684150:CDS 35.0%
AAGGCTGAATGTTTCATACT+TGG - chr4_4:47464577-47464596 Msa0684150:CDS 35.0%
! TGTGGTGTTTAAGATATGGT+TGG + chr4_4:47464756-47464775 None:intergenic 35.0%
!! TTTTTGATTCTATGCTCCGA+CGG - chr4_4:47464796-47464815 Msa0684150:CDS 35.0%
!! CAAGTATTGATAAAGTCCGT+CGG + chr4_4:47464815-47464834 None:intergenic 35.0%
TTCATCACATTACAACCTGA+AGG - chr4_4:47464868-47464887 Msa0684150:CDS 35.0%
!! TTGTTATTTCTCTGGAAGGA+AGG - chr4_4:47465121-47465140 Msa0684150:CDS 35.0%
TATGAGATATATGTTGCCGA+AGG - chr4_4:47465225-47465244 Msa0684150:CDS 35.0%
ATGAGATATATGTTGCCGAA+GGG - chr4_4:47465226-47465245 Msa0684150:CDS 35.0%
ATGTAAATCAGTGGATAGTG+AGG - chr4_4:47465408-47465427 Msa0684150:five_prime_UTR 35.0%
!! ACGGTTACTGTTGTTGTTTC+CGG + chr4_4:47462346-47462365 None:intergenic 40.0%
GATCCTTTAGATGAAGGACT+TGG - chr4_4:47462393-47462412 Msa0684150:three_prime_UTR 40.0%
GTCTAACGTAACAGAAAGAG+TGG + chr4_4:47462419-47462438 None:intergenic 40.0%
TTGGAAGAAGATAAACGGGT+CGG + chr4_4:47462447-47462466 None:intergenic 40.0%
GGTTTCTTCAGAGTGAACTT+TGG + chr4_4:47462466-47462485 None:intergenic 40.0%
ACAACTTTCCGAACAATCTC+CGG - chr4_4:47462486-47462505 Msa0684150:CDS 40.0%
AAGTTACCGGAAAAAGCCTT+CGG + chr4_4:47462645-47462664 None:intergenic 40.0%
!! AAGGCTTTTTCCGGTAACTT+TGG - chr4_4:47462645-47462664 Msa0684150:intron 40.0%
!! AGCTTCTCTCATAGTGGATT+AGG - chr4_4:47462840-47462859 Msa0684150:CDS 40.0%
TGGGAAGTCAGAATCTTCAA+TGG - chr4_4:47463090-47463109 Msa0684150:intron 40.0%
GGGAAGTCAGAATCTTCAAT+GGG - chr4_4:47463091-47463110 Msa0684150:intron 40.0%
! AGAATCTTCAATGGGCTCAA+GGG - chr4_4:47463099-47463118 Msa0684150:intron 40.0%
!! GTTGTTGTTTCTGAGGAACA+TGG - chr4_4:47463146-47463165 Msa0684150:intron 40.0%
!! TTGTTTCTGAGGAACATGGT+TGG - chr4_4:47463150-47463169 Msa0684150:intron 40.0%
! TGTTTCTGAGGAACATGGTT+GGG - chr4_4:47463151-47463170 Msa0684150:intron 40.0%
! GAACATGGTTGGGTTTTTGT+TGG - chr4_4:47463161-47463180 Msa0684150:intron 40.0%
! GAATTTGAAACCGCGTGATT+CGG - chr4_4:47463304-47463323 Msa0684150:intron 40.0%
!! TGATGGTGTTGTTGTGAAAG+AGG - chr4_4:47463343-47463362 Msa0684150:intron 40.0%
! AAAGGAGATGGAAGTGTGAA+TGG - chr4_4:47463495-47463514 Msa0684150:CDS 40.0%
! AAGGAGATGGAAGTGTGAAT+GGG - chr4_4:47463496-47463515 Msa0684150:CDS 40.0%
! ATGGAAGTGTGAATGGGATA+GGG - chr4_4:47463502-47463521 Msa0684150:CDS 40.0%
TTGAAGGAGCAATTAAGTGG+CGG - chr4_4:47463548-47463567 Msa0684150:CDS 40.0%
! GGAGTCTTATCTTGATGTTG+CGG - chr4_4:47463643-47463662 Msa0684150:intron 40.0%
TCTTGATGTTGCGGATAAGA+TGG - chr4_4:47463652-47463671 Msa0684150:intron 40.0%
!! TAAGATGGTGATGGAGAATC+CGG - chr4_4:47463667-47463686 Msa0684150:intron 40.0%
! GAATCCGGAACTTGCTTTAA+TGG - chr4_4:47463682-47463701 Msa0684150:CDS 40.0%
GAACCCATTAAAGCAAGTTC+CGG + chr4_4:47463689-47463708 None:intergenic 40.0%
TTGGATCGGGAAAATTAGAC+AGG - chr4_4:47463805-47463824 Msa0684150:CDS 40.0%
CGGGAAAATTAGACAGGATT+TGG - chr4_4:47463811-47463830 Msa0684150:CDS 40.0%
! AAGTGCTTTTCAGCTAACCA+AGG - chr4_4:47463910-47463929 Msa0684150:CDS 40.0%
GTGGTCAATGATCGTGTTAA+AGG - chr4_4:47464087-47464106 Msa0684150:CDS 40.0%
TCGTGTTAAAGGATCTCTCA+AGG - chr4_4:47464098-47464117 Msa0684150:CDS 40.0%
ACGAACCTGTTTGAGAAATC+CGG + chr4_4:47464142-47464161 None:intergenic 40.0%
! GGATGGATTTAGATTGCTTG+CGG - chr4_4:47464229-47464248 Msa0684150:CDS 40.0%
! AGAAGTGCATTGTTCCACTT+GGG + chr4_4:47464685-47464704 None:intergenic 40.0%
TATGGTTGGCAAGTGATGTA+TGG + chr4_4:47464742-47464761 None:intergenic 40.0%
!! TGTCTTTTTGGCCTAATCTG+TGG + chr4_4:47464774-47464793 None:intergenic 40.0%
GAATTGCTCGAAATTCCTCA+AGG - chr4_4:47465063-47465082 Msa0684150:CDS 40.0%
TCGAAATTCCTCAAGGTGAT+AGG - chr4_4:47465070-47465089 Msa0684150:CDS 40.0%
AAATTCCTCAAGGTGATAGG+CGG - chr4_4:47465073-47465092 Msa0684150:CDS 40.0%
CAATGATAGAAACATCGTCG+TGG + chr4_4:47465104-47465123 None:intergenic 40.0%
! TTTCTCTGGAAGGAAGGATA+TGG - chr4_4:47465127-47465146 Msa0684150:CDS 40.0%
AAAAAGGATGTGTGACCCTT+CGG + chr4_4:47465244-47465263 None:intergenic 40.0%
GACTGTAAAGTTGTAAACCC+TGG - chr4_4:47465430-47465449 Msa0684150:five_prime_UTR 40.0%
TGGCCAAGTCCTTCATCTAA+AGG + chr4_4:47462399-47462418 None:intergenic 45.0%
TGGAAGAAGATAAACGGGTC+GGG + chr4_4:47462446-47462465 None:intergenic 45.0%
GGAGATTGTTCGGAAAGTTG+TGG + chr4_4:47462487-47462506 None:intergenic 45.0%
TCCATAAACGCCGTCGATAA+CGG + chr4_4:47462540-47462559 None:intergenic 45.0%
!! GCTTTTTCCGGTAACTTTGG+TGG - chr4_4:47462648-47462667 Msa0684150:intron 45.0%
ACCAACACCACCAAAGTTAC+CGG + chr4_4:47462658-47462677 None:intergenic 45.0%
TAAACCACGATCAATCGGAC+CGG + chr4_4:47462763-47462782 None:intergenic 45.0%
!! TGGTTTATTTTCCGGTCCGA+TGG - chr4_4:47462776-47462795 Msa0684150:CDS 45.0%
GCTATCTTTATCCATCGGAC+CGG + chr4_4:47462790-47462809 None:intergenic 45.0%
CCGGAGCTATCTTTATCCAT+CGG + chr4_4:47462795-47462814 None:intergenic 45.0%
CCGATGGATAAAGATAGCTC+CGG - chr4_4:47462792-47462811 Msa0684150:CDS 45.0%
!! TCTCTGAAACTGATCAACGC+CGG + chr4_4:47462820-47462839 None:intergenic 45.0%
CAGAGAAGCTTCTCTCATAG+TGG - chr4_4:47462834-47462853 Msa0684150:CDS 45.0%
ATTTCGAAGACTCTGTCACG+TGG - chr4_4:47462921-47462940 Msa0684150:CDS 45.0%
! CAGAATCTTCAATGGGCTCA+AGG - chr4_4:47463098-47463117 Msa0684150:intron 45.0%
AGGAGCTTAAAGGGTTGCTT+TGG - chr4_4:47463255-47463274 Msa0684150:intron 45.0%
! GGAGCTTAAAGGGTTGCTTT+GGG - chr4_4:47463256-47463275 Msa0684150:intron 45.0%
!! AAAGGGTTGCTTTGGGATGA+TGG - chr4_4:47463263-47463282 Msa0684150:intron 45.0%
!! AAGGGTTGCTTTGGGATGAT+GGG - chr4_4:47463264-47463283 Msa0684150:intron 45.0%
!! TTGGGATGATGGGGTTTCAT+CGG - chr4_4:47463274-47463293 Msa0684150:intron 45.0%
TCATCATCAACCGAATCACG+CGG + chr4_4:47463317-47463336 None:intergenic 45.0%
! AGAAGCACGAGGAGAATCAA+AGG - chr4_4:47463477-47463496 Msa0684150:CDS 45.0%
ACGAGGAGAATCAAAGGAGA+TGG - chr4_4:47463483-47463502 Msa0684150:CDS 45.0%
! GATGGAAGTGTGAATGGGAT+AGG - chr4_4:47463501-47463520 Msa0684150:CDS 45.0%
TGTTGCGGATAAGATGGTGA+TGG - chr4_4:47463658-47463677 Msa0684150:intron 45.0%
GCCGAACCTGATTATTGGAT+CGG - chr4_4:47463791-47463810 Msa0684150:CDS 45.0%
CCCGATCCAATAATCAGGTT+CGG + chr4_4:47463795-47463814 None:intergenic 45.0%
CCGAACCTGATTATTGGATC+GGG - chr4_4:47463792-47463811 Msa0684150:CDS 45.0%
TAAGAAACGCAACGGAAGGA+TGG - chr4_4:47464212-47464231 Msa0684150:CDS 45.0%
AATCCCACACAGTTAACACG+AGG - chr4_4:47464256-47464275 Msa0684150:CDS 45.0%
GTTATTGTTTGCAGCCCAAG+TGG - chr4_4:47464668-47464687 Msa0684150:CDS 45.0%
! CAGAAGTGCATTGTTCCACT+TGG + chr4_4:47464686-47464705 None:intergenic 45.0%
CAAGTGGAACAATGCACTTC+TGG - chr4_4:47464684-47464703 Msa0684150:CDS 45.0%
CTTCGACCAAATGTTGAGCA+GGG + chr4_4:47464897-47464916 None:intergenic 45.0%
TCTTCGACCAAATGTTGAGC+AGG + chr4_4:47464898-47464917 None:intergenic 45.0%
AGAAGATAAACGGGTCGGGT+CGG + chr4_4:47462442-47462461 None:intergenic 50.0%
! CGATAACGGCGTTGAAGTGT+TGG + chr4_4:47462526-47462545 None:intergenic 50.0%
CACTTCAACGCCGTTATCGA+CGG - chr4_4:47462527-47462546 Msa0684150:CDS 50.0%
CCGGAAAAAGCCTTCGGAAT+CGG + chr4_4:47462639-47462658 None:intergenic 50.0%
!! CCGATTCCGAAGGCTTTTTC+CGG - chr4_4:47462636-47462655 Msa0684150:intron 50.0%
!! TCCGGTAACTTTGGTGGTGT+TGG - chr4_4:47462654-47462673 Msa0684150:intron 50.0%
!! GGTAACTTTGGTGGTGTTGG+TGG - chr4_4:47462657-47462676 Msa0684150:intron 50.0%
!! AACTTTGGTGGTGTTGGTGG+CGG - chr4_4:47462660-47462679 Msa0684150:intron 50.0%
GACATGAACCCACGCTCTAA+CGG + chr4_4:47462714-47462733 None:intergenic 50.0%
TTAGAGCGTGGGTTCATGTC+CGG - chr4_4:47462714-47462733 Msa0684150:CDS 50.0%
GACATGAACCCACGCTCAAT+CGG + chr4_4:47462741-47462760 None:intergenic 50.0%
ATTGAGCGTGGGTTCATGTC+CGG - chr4_4:47462741-47462760 Msa0684150:CDS 50.0%
GATAAAGATAGCTCCGGCAC+CGG - chr4_4:47462798-47462817 Msa0684150:CDS 50.0%
! TTTCGGTTCGACCAAGATCG+AGG - chr4_4:47462865-47462884 Msa0684150:CDS 50.0%
AAGACTCTGTCACGTGGACA+GGG - chr4_4:47462927-47462946 Msa0684150:CDS 50.0%
TCACCAGCAAGAATCCACTC+CGG + chr4_4:47462996-47463015 None:intergenic 50.0%
! AATGGGCTCAAGGGAAAGCA+GGG - chr4_4:47463108-47463127 Msa0684150:intron 50.0%
!! AGGGTTGCTTTGGGATGATG+GGG - chr4_4:47463265-47463284 Msa0684150:intron 50.0%
ATTCTCCTCGTGCTTCTTCG+CGG + chr4_4:47463474-47463493 None:intergenic 50.0%
AAGCTCTTTCGCGAGCTTTG+AGG - chr4_4:47463612-47463631 Msa0684150:intron 50.0%
! GGGGGATAGTAGAGCTGTTT+TGG - chr4_4:47463760-47463779 Msa0684150:CDS 50.0%
ACCACAGCACAAGGATCATC+CGG + chr4_4:47464072-47464091 None:intergenic 50.0%
CGATCATTGACCACAGCACA+AGG + chr4_4:47464081-47464100 None:intergenic 50.0%
CTCAAGGTCACTCGAGCATT+TGG - chr4_4:47464114-47464133 Msa0684150:CDS 50.0%
! TGGTGCCGGATTTCTCAAAC+AGG - chr4_4:47464134-47464153 Msa0684150:CDS 50.0%
CAGCCTCGTGTTAACTGTGT+GGG + chr4_4:47464262-47464281 None:intergenic 50.0%
TCAGCCTCGTGTTAACTGTG+TGG + chr4_4:47464263-47464282 None:intergenic 50.0%
GCAGCCAATCCAAATCCGAA+AGG - chr4_4:47464309-47464328 Msa0684150:CDS 50.0%
AGGAGACCCTGCTCAACATT+TGG - chr4_4:47464888-47464907 Msa0684150:CDS 50.0%
TTTCGCGCTGCAAAGAAAGC+TGG - chr4_4:47464925-47464944 Msa0684150:CDS 50.0%
GCGAGGGGGTAAGAACAAAA+AGG + chr4_4:47465260-47465279 None:intergenic 50.0%
TCGACACTCGTGAATAGCGA+GGG + chr4_4:47465276-47465295 None:intergenic 50.0%
GAAGATAAACGGGTCGGGTC+GGG + chr4_4:47462441-47462460 None:intergenic 55.0%
!! CGTTGAAGTGTTGGCGCTGA+CGG + chr4_4:47462517-47462536 None:intergenic 55.0%
GCCGTTATCGACGGCGTTTA+TGG - chr4_4:47462536-47462555 Msa0684150:CDS 55.0%
! TCCGTTGCAACCGATTCCGA+AGG - chr4_4:47462626-47462645 Msa0684150:intron 55.0%
GCCTTCGGAATCGGTTGCAA+CGG + chr4_4:47462630-47462649 None:intergenic 55.0%
ATGTCCGGTCCGATTGATCG+TGG - chr4_4:47462756-47462775 Msa0684150:CDS 55.0%
AAACTGATCAACGCCGGTGC+CGG + chr4_4:47462814-47462833 None:intergenic 55.0%
GAAGACTCTGTCACGTGGAC+AGG - chr4_4:47462926-47462945 Msa0684150:CDS 55.0%
! TACTCCGATCAAGGGTGTGC+CGG - chr4_4:47462959-47462978 Msa0684150:intron 55.0%
TTCACCGGCACACCCTTGAT+CGG + chr4_4:47462966-47462985 None:intergenic 55.0%
! CAATGGGCTCAAGGGAAAGC+AGG - chr4_4:47463107-47463126 Msa0684150:intron 55.0%
ATGGGCTCAAGGGAAAGCAG+GGG - chr4_4:47463109-47463128 Msa0684150:intron 55.0%
!! GCGAGCTTTGAGGAAAACCG+AGG - chr4_4:47463622-47463641 Msa0684150:intron 55.0%
CCACAGCACAAGGATCATCC+GGG + chr4_4:47464071-47464090 None:intergenic 55.0%
!! GTCACTCGAGCATTTGGTGC+CGG - chr4_4:47464120-47464139 Msa0684150:CDS 55.0%
TGTTGAGCAGGGTCTCCTTC+AGG + chr4_4:47464886-47464905 None:intergenic 55.0%
TAACGCCGCCTATCACCTTG+AGG + chr4_4:47465081-47465100 None:intergenic 55.0%
GACACTCGTGAATAGCGAGG+GGG + chr4_4:47465274-47465293 None:intergenic 55.0%
CGACACTCGTGAATAGCGAG+GGG + chr4_4:47465275-47465294 None:intergenic 55.0%
CTCGACACTCGTGAATAGCG+AGG + chr4_4:47465277-47465296 None:intergenic 55.0%
!! TGAAGTGTTGGCGCTGACGG+AGG + chr4_4:47462514-47462533 None:intergenic 60.0%
!! TTTGGTGGTGTTGGTGGCGG+TGG - chr4_4:47462663-47462682 Msa0684150:intron 60.0%
!! GGTGGTGGGTTTCCGAGTTC+CGG - chr4_4:47462687-47462706 Msa0684150:CDS 60.0%
! CGCTCTAACGGACCGGAACT+CGG + chr4_4:47462702-47462721 None:intergenic 60.0%
AGTTCCGGTCCGTTAGAGCG+TGG - chr4_4:47462702-47462721 Msa0684150:CDS 60.0%
GTTCCGGTCCGTTAGAGCGT+GGG - chr4_4:47462703-47462722 Msa0684150:CDS 60.0%
! GAACCCACGCTCTAACGGAC+CGG + chr4_4:47462709-47462728 None:intergenic 60.0%
ATGTCCGGTCCGATTGAGCG+TGG - chr4_4:47462729-47462748 Msa0684150:CDS 60.0%
TGTCCGGTCCGATTGAGCGT+GGG - chr4_4:47462730-47462749 Msa0684150:CDS 60.0%
GAACCCACGCTCAATCGGAC+CGG + chr4_4:47462736-47462755 None:intergenic 60.0%
! GATCAAGGGTGTGCCGGTGA+AGG - chr4_4:47462965-47462984 Msa0684150:intron 60.0%
CCAGCAAGAATCCACTCCGG+TGG + chr4_4:47462993-47463012 None:intergenic 60.0%
! CCACCGGAGTGGATTCTTGC+TGG - chr4_4:47462990-47463009 Msa0684150:intron 60.0%
! AGATGCCGCGAAGAAGCACG+AGG - chr4_4:47463466-47463485 Msa0684150:intron 60.0%
CCCGGATGATCCTTGTGCTG+TGG - chr4_4:47464068-47464087 Msa0684150:CDS 60.0%
!! CGGAGGCGCCGGAGATTGTT+CGG + chr4_4:47462497-47462516 None:intergenic 65.0%
!! TTGGTGGCGGTGGTGGTGGT+GGG - chr4_4:47462673-47462692 Msa0684150:intron 65.0%
! TGTGCCGGTGAAGGAGCCAC+CGG - chr4_4:47462974-47462993 Msa0684150:intron 65.0%
CACTCCGGTGGCTCCTTCAC+CGG + chr4_4:47462981-47463000 None:intergenic 65.0%
!! GGTGGTGTTGGTGGCGGTGG+TGG - chr4_4:47462666-47462685 Msa0684150:intron 70.0%
!! GGTGTTGGTGGCGGTGGTGG+TGG - chr4_4:47462669-47462688 Msa0684150:intron 70.0%
!! GTTGGTGGCGGTGGTGGTGG+TGG - chr4_4:47462672-47462691 Msa0684150:intron 70.0%
CGGTGAAGGAGCCACCGGAG+TGG - chr4_4:47462979-47462998 Msa0684150:intron 70.0%
!! GTTGGCGCTGACGGAGGCGC+CGG + chr4_4:47462508-47462527 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47462095 47465534 47462095 ID=Msa0684150;Name=Msa0684150
chr4_4 mRNA 47462095 47465534 47462095 ID=Msa0684150-mRNA-1;Parent=Msa0684150;Name=Msa0684150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=211|1|1|1|1|1|4|370|714
chr4_4 exon 47462095 47462580 47462095 ID=Msa0684150-mRNA-1:exon:11678;Parent=Msa0684150-mRNA-1
chr4_4 exon 47462683 47462947 47462683 ID=Msa0684150-mRNA-1:exon:11677;Parent=Msa0684150-mRNA-1
chr4_4 exon 47463474 47463587 47463474 ID=Msa0684150-mRNA-1:exon:11676;Parent=Msa0684150-mRNA-1
chr4_4 exon 47463674 47465534 47463674 ID=Msa0684150-mRNA-1:exon:11675;Parent=Msa0684150-mRNA-1
chr4_4 five_prime_UTR 47465324 47465534 47465324 ID=Msa0684150-mRNA-1:five_prime_utr;Parent=Msa0684150-mRNA-1
chr4_4 CDS 47463674 47465323 47463674 ID=Msa0684150-mRNA-1:cds;Parent=Msa0684150-mRNA-1
chr4_4 CDS 47463474 47463587 47463474 ID=Msa0684150-mRNA-1:cds;Parent=Msa0684150-mRNA-1
chr4_4 CDS 47462683 47462947 47462683 ID=Msa0684150-mRNA-1:cds;Parent=Msa0684150-mRNA-1
chr4_4 CDS 47462465 47462580 47462465 ID=Msa0684150-mRNA-1:cds;Parent=Msa0684150-mRNA-1
chr4_4 three_prime_UTR 47462095 47462464 47462095 ID=Msa0684150-mRNA-1:three_prime_utr;Parent=Msa0684150-mRNA-1
Gene Sequence

>Msa0684150

ATGGGAAACAAAATAGGAAAATTAACGGTATGTTTCACCGGAAACAACAACAGTAACCGTAAACACGACATATCCATATTAATAACGGATCCTTTAGATGAAGGACTTGGCCACTCTTTCTGTTACGTTAGACCCGACCCGACCCGTTTATCTTCTTCCAAAGTTCACTCTGAAGAAACCACAACTTTCCGAACAATCTCCGGCGCCTCCGTCAGCGCCAACACTTCAACGCCGTTATCGACGGCGTTTATGGATTTGTACTCCTATGGTTGTTTTGATAGAGCTGCAGCTTTTGAAAGTTCAACTTCTTTTGCATCTCTTCCGTTGCAACCGATTCCGAAGGCTTTTTCCGGTAACTTTGGTGGTGTTGGTGGCGGTGGTGGTGGTGGGTTTCCGAGTTCCGGTCCGTTAGAGCGTGGGTTCATGTCCGGTCCGATTGAGCGTGGGTTCATGTCCGGTCCGATTGATCGTGGTTTATTTTCCGGTCCGATGGATAAAGATAGCTCCGGCACCGGCGTTGATCAGTTTCAGAGAAGCTTCTCTCATAGTGGATTAGGTTTTTCGGTTCGACCAAGATCGAGGAAAGAAAAATGGATTCGTGTTCTTCAACGTGCGATTTCGAAGACTCTGTCACGTGGACAGGGTTCTATTGTTACTCCGATCAAGGGTGTGCCGGTGAAGGAGCCACCGGAGTGGATTCTTGCTGGTGAGAAGCACAATGAGAATTTGACTGTGAGTAGTTTGAATTTGAGTAGTGAAGGTAGTTTGGAAGATGATGATTCGTTGGGAAGTCAGAATCTTCAATGGGCTCAAGGGAAAGCAGGGGAAGATCGTGTTCATGTTGTTGTTTCTGAGGAACATGGTTGGGTTTTTGTTGGGATTTATGATGGTTTTAATGGTCCTGATGCACCTGATTATTTGTTGTCAAATCTTTATAGTTTTGTTCATAAGGAGCTTAAAGGGTTGCTTTGGGATGATGGGGTTTCATCGGATAATTCGAATTTGAAACCGCGTGATTCGGTTGATGATGATGTTGTTGATGGTGTTGTTGTGAAAGAGGATATGTTGTTTGATGATTGTTCTCAATGTGTTGATCAAGAGAAAGGTGATTCGATTTCAAAGAAAAAAAAGAGAGGTAAGAATTCGAAGAATAAGTACAAAGATGCCGCGAAGAAGCACGAGGAGAATCAAAGGAGATGGAAGTGTGAATGGGATAGGGAGAGATTAGAGCTTGATAGAAGATTGAAGGAGCAATTAAGTGGCGGTGATGCCGACGATAATTCTGTTAATCATTCAGATGTTTTGGAAGCTCTTTCGCGAGCTTTGAGGAAAACCGAGGAGTCTTATCTTGATGTTGCGGATAAGATGGTGATGGAGAATCCGGAACTTGCTTTAATGGGTTCATGTGTTCTTGTAATGTTGATGAAAGGGGAAGATGTTTATGTGATGAATGTGGGGGATAGTAGAGCTGTTTTGGCACAAAAAGCCGAACCTGATTATTGGATCGGGAAAATTAGACAGGATTTGGAGAGGATTAATGAAGAGACAATGCATGATCTTGAATCATGGGATGATGCTGATAAATCAAATGTTGTTCCTAGTTTAAGTGCTTTTCAGCTAACCAAGGATCATAGTACCAATGTTGAAGAGGAAGTAATCAGAATAATAAAAGAGCACCCGGATGATCCTTGTGCTGTGGTCAATGATCGTGTTAAAGGATCTCTCAAGGTCACTCGAGCATTTGGTGCCGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAGATGTTTAGAATAGACTACGTAGGAAATTCTCCATACATCACTTGCCAACCATATCTTAAACACCACAGATTAGGCCAAAAAGACAAATTTTTGATTCTATGCTCCGACGGACTTTATCAATACTTGTCAAACGAAGAAGCAGTAGCTGAAGTTGAGCTTTTCATCACATTACAACCTGAAGGAGACCCTGCTCAACATTTGGTCGAAGAAGTCTTGTTTCGCGCTGCAAAGAAAGCTGGTTTGGACTTTCACGAATTGCTCGAAATTCCTCAAGGTGATAGGCGGCGTTACCACGACGATGTTTCTATCATTGTTATTTCTCTGGAAGGAAGGATATGGAGATCATGTGTATAA

Protein sequence

>Msa0684150

MGNKIGKLTVCFTGNNNSNRKHDISILITDPLDEGLGHSFCYVRPDPTRLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFMDLYSYGCFDRAAAFESSTSFASLPLQPIPKAFSGNFGGVGGGGGGGFPSSGPLERGFMSGPIERGFMSGPIDRGLFSGPMDKDSSGTGVDQFQRSFSHSGLGFSVRPRSRKEKWIRVLQRAISKTLSRGQGSIVTPIKGVPVKEPPEWILAGEKHNENLTVSSLNLSSEGSLEDDDSLGSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSFVHKELKGLLWDDGVSSDNSNLKPRDSVDDDVVDGVVVKEDMLFDDCSQCVDQEKGDSISKKKKRGKNSKNKYKDAAKKHEENQRRWKCEWDRERLELDRRLKEQLSGGDADDNSVNHSDVLEALSRALRKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWIGKIRQDLERINEETMHDLESWDDADKSNVVPSLSAFQLTKDHSTNVEEEVIRIIKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYITCQPYLKHHRLGQKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV*