Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234410 | XP_024632498.1 | 96.264 | 348 | 13 | 0 | 1 | 348 | 57 | 404 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234410 | sp|P30184|AMPL1_ARATH | 68.222 | 343 | 103 | 3 | 6 | 348 | 4 | 340 | 2.35e-159 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234410 | A0A396J799 | 96.264 | 348 | 13 | 0 | 1 | 348 | 57 | 404 | 0.0 | 670 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0234410 | 0.800406 | 1.462966e-48 | -8.615850e-47 |
| Msa0001830 | Msa0234410 | -0.803051 | 4.192331e-49 | -8.615850e-47 |
| Msa0029520 | Msa0234410 | 0.808717 | 2.699778e-50 | -8.615850e-47 |
| Msa0035050 | Msa0234410 | 0.806451 | 8.172281e-50 | -8.615850e-47 |
| Msa0067590 | Msa0234410 | 0.825598 | 4.296345e-54 | -8.615850e-47 |
| Msa0072420 | Msa0234410 | -0.802160 | 6.398954e-49 | -8.615850e-47 |
| Msa0082420 | Msa0234410 | -0.804496 | 2.101342e-49 | -8.615850e-47 |
| Msa0090510 | Msa0234410 | -0.837393 | 5.339027e-57 | -8.615850e-47 |
| Msa0093950 | Msa0234410 | 0.821792 | 3.344880e-53 | -8.615850e-47 |
| Msa0136870 | Msa0234410 | 0.811799 | 5.843068e-51 | -8.615850e-47 |
| Msa0139550 | Msa0234410 | 0.815179 | 1.055244e-51 | -8.615850e-47 |
| Msa0148080 | Msa0234410 | -0.813018 | 3.164547e-51 | -8.615850e-47 |
| Msa0183910 | Msa0234410 | -0.832068 | 1.167437e-55 | -8.615850e-47 |
| Msa0187590 | Msa0234410 | 0.836905 | 7.113709e-57 | -8.615850e-47 |
| Msa0220400 | Msa0234410 | 0.846915 | 1.608536e-59 | -8.615850e-47 |
| Msa0232790 | Msa0234410 | -0.802179 | 6.341942e-49 | -8.615850e-47 |
| Msa0234410 | Msa0259680 | -0.808132 | 3.599756e-50 | -8.615850e-47 |
| Msa0234410 | Msa0272300 | -0.811166 | 8.021736e-51 | -8.615850e-47 |
| Msa0234410 | Msa0288170 | 0.859005 | 5.578680e-63 | -8.615850e-47 |
| Msa0234410 | Msa0296050 | 0.802236 | 6.173899e-49 | -8.615850e-47 |
| Msa0234410 | Msa0310720 | 0.800764 | 1.236826e-48 | -8.615850e-47 |
| Msa0234410 | Msa0310730 | 0.826845 | 2.169696e-54 | -8.615850e-47 |
| Msa0234410 | Msa0318680 | -0.817596 | 3.037419e-52 | -8.615850e-47 |
| Msa0234410 | Msa0326630 | 0.818662 | 1.743871e-52 | -8.615850e-47 |
| Msa0234410 | Msa0333970 | 0.801139 | 1.036639e-48 | -8.615850e-47 |
| Msa0234410 | Msa0341480 | -0.814344 | 1.615738e-51 | -8.615850e-47 |
| Msa0234410 | Msa0367540 | 0.820020 | 8.553259e-53 | -8.615850e-47 |
| Msa0234410 | Msa0374340 | 0.834377 | 3.104028e-56 | -8.615850e-47 |
| Msa0234410 | Msa0374420 | 0.822986 | 1.766396e-53 | -8.615850e-47 |
| Msa0234410 | Msa0383870 | 0.810862 | 9.333084e-51 | -8.615850e-47 |
| Msa0234410 | Msa0385500 | -0.810293 | 1.238892e-50 | -8.615850e-47 |
| Msa0234410 | Msa0403480 | 0.803053 | 4.187306e-49 | -8.615850e-47 |
| Msa0234410 | Msa0415160 | 0.832429 | 9.501332e-56 | -8.615850e-47 |
| Msa0234410 | Msa0476170 | 0.800013 | 1.758650e-48 | -8.615850e-47 |
| Msa0234410 | Msa0500700 | 0.806130 | 9.550154e-50 | -8.615850e-47 |
| Msa0234410 | Msa0523430 | 0.803735 | 3.025268e-49 | -8.615850e-47 |
| Msa0234410 | Msa0527540 | -0.813287 | 2.763414e-51 | -8.615850e-47 |
| Msa0234410 | Msa0548650 | 0.826932 | 2.068384e-54 | -8.615850e-47 |
| Msa0234410 | Msa0566940 | 0.824539 | 7.643571e-54 | -8.615850e-47 |
| Msa0234410 | Msa0572550 | 0.805779 | 1.132143e-49 | -8.615850e-47 |
| Msa0234410 | Msa0574930 | -0.809598 | 1.748613e-50 | -8.615850e-47 |
| Msa0234410 | Msa0576020 | 0.814412 | 1.560762e-51 | -8.615850e-47 |
| Msa0234410 | Msa0576080 | 0.810152 | 1.328769e-50 | -8.615850e-47 |
| Msa0234410 | Msa0576120 | 0.829029 | 6.470774e-55 | -8.615850e-47 |
| Msa0234410 | Msa0587120 | -0.824477 | 7.903544e-54 | -8.615850e-47 |
| Msa0234410 | Msa0592330 | -0.810156 | 1.325979e-50 | -8.615850e-47 |
| Msa0234410 | Msa0613420 | -0.821960 | 3.057469e-53 | -8.615850e-47 |
| Msa0234410 | Msa0637930 | 0.888800 | 4.280948e-73 | -8.615850e-47 |
| Msa0234410 | Msa0638010 | 0.811977 | 5.345250e-51 | -8.615850e-47 |
| Msa0234410 | Msa0686950 | 0.810769 | 9.776699e-51 | -8.615850e-47 |
| Msa0234410 | Msa0741440 | -0.831487 | 1.623557e-55 | -8.615850e-47 |
| Msa0234410 | Msa0769970 | -0.801397 | 9.178721e-49 | -8.615850e-47 |
| Msa0234410 | Msa0781330 | 0.809274 | 2.051930e-50 | -8.615850e-47 |
| Msa0234410 | Msa0802240 | -0.800675 | 1.289734e-48 | -8.615850e-47 |
| Msa0234410 | Msa0822500 | -0.811313 | 7.452501e-51 | -8.615850e-47 |
| Msa0234410 | Msa0827520 | 0.810060 | 1.390786e-50 | -8.615850e-47 |
| Msa0234410 | Msa0881530 | 0.865049 | 7.826143e-65 | -8.615850e-47 |
| Msa0234410 | Msa0930740 | -0.810022 | 1.417093e-50 | -8.615850e-47 |
| Msa0234410 | Msa0944020 | -0.821862 | 3.221499e-53 | -8.615850e-47 |
| Msa0234410 | Msa0982090 | 0.846095 | 2.692652e-59 | -8.615850e-47 |
| Msa0234410 | Msa1059470 | -0.838249 | 3.217107e-57 | -8.615850e-47 |
| Msa0234410 | Msa1062040 | -0.808593 | 2.869522e-50 | -8.615850e-47 |
| Msa0234410 | Msa1085610 | 0.819436 | 1.162331e-52 | -8.615850e-47 |
| Msa0234410 | Msa1129300 | 0.847054 | 1.473988e-59 | -8.615850e-47 |
| Msa0234410 | Msa1176170 | -0.813716 | 2.223350e-51 | -8.615850e-47 |
| Msa0234410 | Msa1190100 | 0.832973 | 6.962094e-56 | -8.615850e-47 |
| Msa0234410 | Msa1196610 | 0.819714 | 1.004845e-52 | -8.615850e-47 |
| Msa0234410 | Msa1206400 | 0.843593 | 1.273842e-58 | -8.615850e-47 |
| Msa0234410 | Msa1206450 | 0.848879 | 4.626168e-60 | -8.615850e-47 |
| Msa0234410 | Msa1258030 | 0.864660 | 1.036429e-64 | -8.615850e-47 |
| Msa0234410 | Msa1272010 | -0.821171 | 4.653208e-53 | -8.615850e-47 |
| Msa0234410 | Msa1277410 | -0.863026 | 3.337950e-64 | -8.615850e-47 |
| Msa0234410 | Msa1307160 | -0.851847 | 6.795284e-61 | -8.615850e-47 |
| Msa0234410 | Msa1307180 | -0.817729 | 2.835831e-52 | -8.615850e-47 |
| Msa0234410 | Msa1316360 | -0.823256 | 1.527249e-53 | -8.615850e-47 |
| Msa0234410 | Msa1325410 | 0.803802 | 2.930246e-49 | -8.615850e-47 |
| Msa0234410 | Msa1341060 | -0.826539 | 2.567112e-54 | -8.615850e-47 |
| Msa0234410 | Msa1342960 | 0.807808 | 4.218366e-50 | -8.615850e-47 |
| Msa0234410 | Msa1346840 | -0.826989 | 2.003455e-54 | -8.615850e-47 |
| Msa0234410 | Msa1364350 | 0.876530 | 1.297562e-68 | -8.615850e-47 |
| Msa0234410 | Msa1365030 | 0.822648 | 2.116849e-53 | -8.615850e-47 |
| Msa0234410 | Msa1367400 | 0.814492 | 1.498955e-51 | -8.615850e-47 |
| Msa0234410 | Msa1375610 | 0.811158 | 8.052058e-51 | -8.615850e-47 |
| Msa0234410 | Msa1375970 | 0.805420 | 1.346559e-49 | -8.615850e-47 |
| Msa0234410 | Msa1376550 | 0.802184 | 6.326823e-49 | -8.615850e-47 |
| Msa0234410 | Msa1382380 | 0.846886 | 1.638167e-59 | -8.615850e-47 |
| Msa0234410 | Msa1407760 | -0.801338 | 9.440483e-49 | -8.615850e-47 |
| Msa0234410 | Msa1462680 | 0.810329 | 1.216617e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234410 | MtrunA17_Chr2g0305841 | 96.264 | 348 | 13 | 0 | 1 | 348 | 57 | 404 | 0.0 | 670 |
| Msa0234410 | MtrunA17_Chr4g0073971 | 73.410 | 346 | 82 | 5 | 6 | 348 | 50 | 388 | 2.31e-174 | 497 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234410 | AT2G24200.2 | 68.222 | 343 | 103 | 3 | 6 | 348 | 4 | 340 | 2.39e-160 | 460 |
| Msa0234410 | AT2G24200.1 | 68.222 | 343 | 103 | 3 | 6 | 348 | 4 | 340 | 2.39e-160 | 460 |
| Msa0234410 | AT4G30920.1 | 67.529 | 348 | 103 | 5 | 4 | 348 | 63 | 403 | 3.91e-151 | 438 |
| Msa0234410 | AT4G30910.1 | 64.841 | 347 | 114 | 4 | 4 | 348 | 62 | 402 | 1.34e-141 | 414 |
| Msa0234410 | AT4G30910.2 | 64.841 | 347 | 114 | 4 | 4 | 348 | 62 | 402 | 2.00e-141 | 414 |
| Msa0234410 | AT2G24200.3 | 60.350 | 343 | 94 | 4 | 6 | 348 | 4 | 304 | 2.08e-132 | 387 |
| Msa0234410 | AT5G13940.1 | 72.917 | 48 | 13 | 0 | 238 | 285 | 66 | 113 | 7.57e-16 | 79.7 |
Find 105 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATCACTTGATATTAT+TGG | 0.174623 | 2_2:+7147815 | Msa0234410:CDS |
| GAGAACACTGGACTCTAAAT+TGG | 0.202303 | 2_2:+7147454 | Msa0234410:CDS |
| CAATAATATCAAGTGATTTA+AGG | 0.213855 | 2_2:-7147814 | None:intergenic |
| TTAAGTTTCTTCTCGAATTC+AGG | 0.248834 | 2_2:-7147851 | None:intergenic |
| TTTAAGGGCCGGTTTCTTCT+TGG | 0.272500 | 2_2:-7147798 | None:intergenic |
| GATATTATTGGTCTTGGAAC+AGG | 0.287196 | 2_2:+7147827 | Msa0234410:CDS |
| TGAGCTCATGAAATTTGATA+TGG | 0.294915 | 2_2:+7150795 | Msa0234410:CDS |
| GCAGTGTAAGGAATTGAATA+TGG | 0.300638 | 2_2:+7148835 | Msa0234410:CDS |
| TCTAAATTGGGCGGTCTGTT+AGG | 0.307693 | 2_2:+7147467 | Msa0234410:CDS |
| GAGTCCAGTGTTCTCAATAT+CGG | 0.310628 | 2_2:-7147446 | None:intergenic |
| GTATCTTCTGGAATCATTCT+TGG | 0.316759 | 2_2:+7147887 | Msa0234410:CDS |
| TCACTTGATATTATTGGTCT+TGG | 0.336063 | 2_2:+7147821 | Msa0234410:CDS |
| CCGTCACGGCAACTGCTAAT+AGG | 0.341853 | 2_2:-7147382 | None:intergenic |
| ATTGAATATGGGATCCTATC+TGG | 0.350799 | 2_2:+7148847 | Msa0234410:CDS |
| ATGCCTCCTCGCGCCACTCT+TGG | 0.351068 | 2_2:+7147033 | Msa0234410:CDS |
| CTACCTGGTGTGAGCACATT+AGG | 0.353631 | 2_2:-7147932 | None:intergenic |
| ACTATATGTTGAAGCTATCT+TGG | 0.359520 | 2_2:-7148780 | None:intergenic |
| GTGTTCTCAATATCGGATTC+TGG | 0.367703 | 2_2:-7147439 | None:intergenic |
| AATAATATCAAGTGATTTAA+GGG | 0.375912 | 2_2:-7147813 | None:intergenic |
| AATGTCAAGTTGGCATTAGT+TGG | 0.382243 | 2_2:+7148941 | Msa0234410:CDS |
| TTTGGAGCAGCAAAGGCTAT+TGG | 0.389431 | 2_2:+7150835 | Msa0234410:CDS |
| GTCCAGCAGCAGGTGTAATT+CGG | 0.413560 | 2_2:-7147544 | None:intergenic |
| GAGGACTTCACTGGAAAACT+TGG | 0.426733 | 2_2:+7147506 | Msa0234410:CDS |
| GGCCGGTTTCTTCTTGGACT+CGG | 0.427102 | 2_2:-7147792 | None:intergenic |
| ATTACACCTGCTGCTGGACT+TGG | 0.432997 | 2_2:+7147548 | Msa0234410:CDS |
| ATTGCTTCTGCAATCGCCAC+TGG | 0.433218 | 2_2:+7147731 | Msa0234410:CDS |
| GCCAAGCAAGGCGAGTCTCT+TGG | 0.434275 | 2_2:-7147573 | None:intergenic |
| TCCAAGAGACTCGCCTTGCT+TGG | 0.444785 | 2_2:+7147572 | Msa0234410:CDS |
| TATGCAGGAGATGTATCTTC+TGG | 0.447764 | 2_2:+7147875 | Msa0234410:CDS |
| GACTGTCGTGGGAACATTTG+AGG | 0.457993 | 2_2:+7147754 | Msa0234410:CDS |
| CTGTGTTATAAACCACCAAC+TGG | 0.463906 | 2_2:+7148911 | Msa0234410:CDS |
| AAGTTGGCATTAGTTGGAAA+AGG | 0.483487 | 2_2:+7148947 | Msa0234410:CDS |
| ATTGGTCAAATCAAACCTCT+TGG | 0.491039 | 2_2:+7150853 | Msa0234410:CDS |
| CTGATGTGGCGGAATGGAAA+GGG | 0.491199 | 2_2:+7147357 | Msa0234410:CDS |
| AGACTCGCCTTGCTTGGCCT+CGG | 0.492735 | 2_2:+7147578 | Msa0234410:CDS |
| GTCCGAGTCCAAGAAGAAAC+CGG | 0.503814 | 2_2:+7147790 | Msa0234410:CDS |
| TTCTGGAATCATTCTTGGAA+GGG | 0.504617 | 2_2:+7147892 | Msa0234410:CDS |
| ATATCAAGTGATTTAAGGGC+CGG | 0.505431 | 2_2:-7147809 | None:intergenic |
| CTGCTCAGCATCCAATACTT+TGG | 0.511072 | 2_2:-7148816 | None:intergenic |
| AATGCCAACTTGACATTGAC+AGG | 0.511427 | 2_2:-7148935 | None:intergenic |
| ACATTGACAGGTCCAGTTGG+TGG | 0.511434 | 2_2:-7148923 | None:intergenic |
| TTCTGCAGCTAACTCCGCTC+AGG | 0.512592 | 2_2:+7147652 | Msa0234410:CDS |
| AGTGAAGTCCTCTTCGGACG+AGG | 0.513926 | 2_2:-7147495 | None:intergenic |
| ATTGGATGCTGAGCAGTGTA+AGG | 0.514214 | 2_2:+7148823 | Msa0234410:CDS |
| AGAACACTGGACTCTAAATT+GGG | 0.514658 | 2_2:+7147455 | Msa0234410:CDS |
| GGCTGCAGCAACAGCCAGAT+AGG | 0.519387 | 2_2:-7148861 | None:intergenic |
| CCGCCTAATGTGCTCACACC+AGG | 0.520105 | 2_2:+7147929 | Msa0234410:CDS |
| AATCGCCACTGGGACTGTCG+TGG | 0.526073 | 2_2:+7147742 | Msa0234410:CDS |
| GGCAGAGAGTCCTTGAAAAG+TGG | 0.528388 | 2_2:-7147702 | None:intergenic |
| TCGTCCGAAGAGGACTTCAC+TGG | 0.529813 | 2_2:+7147497 | Msa0234410:CDS |
| GAGCTCATGAAATTTGATAT+GGG | 0.529929 | 2_2:+7150796 | Msa0234410:CDS |
| CTTCTGGAATCATTCTTGGA+AGG | 0.530719 | 2_2:+7147891 | Msa0234410:CDS |
| CTCCGAATTACACCTGCTGC+TGG | 0.532926 | 2_2:+7147542 | Msa0234410:CDS |
| GCGATTGCAGAAGCAATGCT+AGG | 0.538951 | 2_2:-7147725 | None:intergenic |
| AGATGGGCCGAGGCCAAGCA+AGG | 0.541195 | 2_2:-7147585 | None:intergenic |
| TTGCTTCTGCAATCGCCACT+GGG | 0.543142 | 2_2:+7147732 | Msa0234410:CDS |
| CAGTGTAAGGAATTGAATAT+GGG | 0.544881 | 2_2:+7148836 | Msa0234410:CDS |
| GAGAAGAAACTTAAGTATGC+AGG | 0.546266 | 2_2:+7147860 | Msa0234410:CDS |
| CTGATACTGATGTGGCGGAA+TGG | 0.546886 | 2_2:+7147351 | Msa0234410:CDS |
| GGCATAATGAGGTTGCGGAC+AGG | 0.548592 | 2_2:-7147015 | None:intergenic |
| GGTGGCTACAATATAAAGAC+AGG | 0.551468 | 2_2:+7150757 | Msa0234410:CDS |
| CGATTGCAGAAGCAATGCTA+GGG | 0.552265 | 2_2:-7147724 | None:intergenic |
| ACTGATGTGGCGGAATGGAA+AGG | 0.554911 | 2_2:+7147356 | Msa0234410:CDS |
| GCAGAGAGTCCTTGAAAAGT+GGG | 0.556742 | 2_2:-7147701 | None:intergenic |
| CCTATTAGCAGTTGCCGTGA+CGG | 0.558998 | 2_2:+7147382 | Msa0234410:CDS |
| TTGGATCCAAGTCCAGCAGC+AGG | 0.562328 | 2_2:-7147554 | None:intergenic |
| TTGGTGGTTTATAACACAGA+TGG | 0.565369 | 2_2:-7148907 | None:intergenic |
| ATATTATTGGTCTTGGAACA+GGG | 0.572432 | 2_2:+7147828 | Msa0234410:CDS |
| GAGGAGGCATAATGAGGTTG+CGG | 0.572965 | 2_2:-7147020 | None:intergenic |
| ATGAGCTCAATCATACAGCC+AGG | 0.573251 | 2_2:-7150781 | None:intergenic |
| ATCGCCACTGGGACTGTCGT+GGG | 0.578510 | 2_2:+7147743 | Msa0234410:CDS |
| TGGACCTGTCAATGTCAAGT+TGG | 0.580098 | 2_2:+7148931 | Msa0234410:CDS |
| AGCAACATGGGCAGCCTGAG+CGG | 0.584303 | 2_2:-7147666 | None:intergenic |
| TAGAGGAAACAGATGGGCCG+AGG | 0.584476 | 2_2:-7147595 | None:intergenic |
| GCGGCAGTAGAGGAAACAGA+TGG | 0.586413 | 2_2:-7147602 | None:intergenic |
| AATCAAACCTCTTGGAGTCG+AGG | 0.586624 | 2_2:+7150861 | Msa0234410:CDS |
| AAGCCAAGAGTGGCGCGAGG+AGG | 0.587921 | 2_2:-7147036 | None:intergenic |
| GGTTGCGGACAGGTACTTCG+CGG | 0.599917 | 2_2:-7147005 | None:intergenic |
| GAATCCGATATTGAGAACAC+TGG | 0.610818 | 2_2:+7147442 | Msa0234410:CDS |
| TGGCGCGAGGAGGCATAATG+AGG | 0.611619 | 2_2:-7147026 | None:intergenic |
| TACAATATAAAGACAGGACC+TGG | 0.618282 | 2_2:+7150763 | Msa0234410:CDS |
| TAACAGACCTCGACTCCAAG+AGG | 0.623708 | 2_2:-7150868 | None:intergenic |
| TTGACATTGACAGGTCCAGT+TGG | 0.625230 | 2_2:-7148926 | None:intergenic |
| TAGAACAACGACAGCAACAT+GGG | 0.630025 | 2_2:-7147678 | None:intergenic |
| ACTGCCGCCTTTAAAACCCT+CGG | 0.636592 | 2_2:+7147617 | Msa0234410:CDS |
| AGGTGAAGCCTCGTCCGAAG+AGG | 0.638183 | 2_2:+7147487 | Msa0234410:CDS |
| GTTGCGGACAGGTACTTCGC+GGG | 0.641251 | 2_2:-7147004 | None:intergenic |
| CTCATGAAATTTGATATGGG+TGG | 0.641407 | 2_2:+7150799 | Msa0234410:CDS |
| GGATACTGATACTGATGTGG+CGG | 0.642793 | 2_2:+7147346 | Msa0234410:CDS |
| GGGGTGAGTGAAGCCAAGAG+TGG | 0.643443 | 2_2:-7147046 | None:intergenic |
| TGATGTGGCGGAATGGAAAG+GGG | 0.646316 | 2_2:+7147358 | Msa0234410:CDS |
| CCTGGTGTGAGCACATTAGG+CGG | 0.655495 | 2_2:-7147929 | None:intergenic |
| CGGCAGTAGAGGAAACAGAT+GGG | 0.656185 | 2_2:-7147601 | None:intergenic |
| GAAGGATACTGATACTGATG+TGG | 0.662024 | 2_2:+7147343 | Msa0234410:CDS |
| GTAGAACAACGACAGCAACA+TGG | 0.662709 | 2_2:-7147679 | None:intergenic |
| GTGAAGCCAAGAGTGGCGCG+AGG | 0.668718 | 2_2:-7147039 | None:intergenic |
| AACAAACGCACGGACCTTGG+GGG | 0.670089 | 2_2:-7147082 | None:intergenic |
| CACAGATGGATAAACTGAGG+AGG | 0.679919 | 2_2:-7148893 | None:intergenic |
| ACACTGGACTCTAAATTGGG+CGG | 0.683519 | 2_2:+7147458 | Msa0234410:CDS |
| CAGAAGCAACAGACTCACCG+AGG | 0.700899 | 2_2:-7147634 | None:intergenic |
| TAACACAGATGGATAAACTG+AGG | 0.708222 | 2_2:-7148896 | None:intergenic |
| TGTTCCCACGACAGTCCCAG+TGG | 0.709007 | 2_2:-7147747 | None:intergenic |
| GATTGCAGAAGCAATGCTAG+GGG | 0.709015 | 2_2:-7147723 | None:intergenic |
| AAACTGAGGAGGATTTGCTG+AGG | 0.722190 | 2_2:-7148882 | None:intergenic |
| AGAAGCAACAGACTCACCGA+GGG | 0.728785 | 2_2:-7147633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATACAAATTTTAAAAT+AGG | + | chr2_2:7149685-7149704 | Msa0234410:intron | 10.0% |
| !! | AATAATATCAAGTGATTTAA+GGG | - | chr2_2:7147816-7147835 | None:intergenic | 15.0% |
| !!! | GATTAGATTTAAAATTGATT+AGG | - | chr2_2:7148072-7148091 | None:intergenic | 15.0% |
| !!! | TAATAGTTTCTAGAAATATA+TGG | - | chr2_2:7149219-7149238 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAACATATTCTA+AGG | - | chr2_2:7149463-7149482 | None:intergenic | 15.0% |
| !! | ACAATAAATTTAAACATCAA+GGG | - | chr2_2:7150393-7150412 | None:intergenic | 15.0% |
| !! | CAATAATATCAAGTGATTTA+AGG | - | chr2_2:7147817-7147836 | None:intergenic | 20.0% |
| !! | CTTAAATCACTTGATATTAT+TGG | + | chr2_2:7147815-7147834 | Msa0234410:CDS | 20.0% |
| !!! | TTTAAAATTGATTAGGATGT+GGG | - | chr2_2:7148065-7148084 | None:intergenic | 20.0% |
| !!! | ATTTAAAATTGATTAGGATG+TGG | - | chr2_2:7148066-7148085 | None:intergenic | 20.0% |
| !!! | TTCAAAGTACTCAATAAATT+TGG | + | chr2_2:7148162-7148181 | Msa0234410:intron | 20.0% |
| !! | ATAGTTTATTTGAATCAGTA+AGG | + | chr2_2:7148267-7148286 | Msa0234410:intron | 20.0% |
| !! | TAGTTTATTTGAATCAGTAA+GGG | + | chr2_2:7148268-7148287 | Msa0234410:intron | 20.0% |
| !!! | AATCTTGTTTTTATATTCGA+TGG | + | chr2_2:7148320-7148339 | Msa0234410:intron | 20.0% |
| !!! | ATCTTGTTTTTATATTCGAT+GGG | + | chr2_2:7148321-7148340 | Msa0234410:intron | 20.0% |
| !!! | AGTTGAATTGAGAATTTTAT+TGG | + | chr2_2:7148452-7148471 | Msa0234410:intron | 20.0% |
| !! | TAAAAGTTTATCATTCTGAT+TGG | - | chr2_2:7149261-7149280 | None:intergenic | 20.0% |
| !!! | TCTCATTTTAAGGTTATTTT+TGG | + | chr2_2:7149989-7150008 | Msa0234410:intron | 20.0% |
| !!! | AAGGTTATTTTTGGATTTTT+AGG | + | chr2_2:7149998-7150017 | Msa0234410:intron | 20.0% |
| !!! | AGGTTATTTTTGGATTTTTA+GGG | + | chr2_2:7149999-7150018 | Msa0234410:intron | 20.0% |
| !! | ATATCAGTCATTATTAGATA+AGG | - | chr2_2:7150062-7150081 | None:intergenic | 20.0% |
| !! | TTATCTAATAATGACTGATA+TGG | + | chr2_2:7150061-7150080 | Msa0234410:intron | 20.0% |
| !! | TACATGGTTTATTAATTCTA+TGG | + | chr2_2:7150275-7150294 | Msa0234410:intron | 20.0% |
| !!! | TGATCAATTGTTGATTTAAA+AGG | - | chr2_2:7150348-7150367 | None:intergenic | 20.0% |
| !! | GACAATAAATTTAAACATCA+AGG | - | chr2_2:7150394-7150413 | None:intergenic | 20.0% |
| !!! | CCAAAAAATATTCTTTGAAA+AGG | - | chr2_2:7150918-7150937 | None:intergenic | 20.0% |
| !!! | CCTTTTCAAAGAATATTTTT+TGG | + | chr2_2:7150915-7150934 | Msa0234410:CDS | 20.0% |
| ! | TAAAAAAAGAAACAAACGCA+CGG | - | chr2_2:7147095-7147114 | None:intergenic | 25.0% |
| !! | AAAGTACTCAATAAATTTGG+TGG | + | chr2_2:7148165-7148184 | Msa0234410:intron | 25.0% |
| ! | AAATATTGAGGAATATTCTG+CGG | + | chr2_2:7148622-7148641 | Msa0234410:intron | 25.0% |
| !! | TGCAGAAGTATATTAAGATT+TGG | - | chr2_2:7148697-7148716 | None:intergenic | 25.0% |
| ! | TTGTATAAACACAGATGAAT+AGG | - | chr2_2:7149012-7149031 | None:intergenic | 25.0% |
| ! | ATCTGTGTTTATACAATACT+TGG | + | chr2_2:7149016-7149035 | Msa0234410:intron | 25.0% |
| !! | CTTTGTTTGAAACAATGTTA+TGG | + | chr2_2:7149058-7149077 | Msa0234410:intron | 25.0% |
| ! | TGATACTCAATACTCAAAAA+TGG | - | chr2_2:7149149-7149168 | None:intergenic | 25.0% |
| ! | TATATCACAAAATGAAGTAC+AGG | + | chr2_2:7149375-7149394 | Msa0234410:intron | 25.0% |
| !!! | TTTAAACATATTCTAAGGTG+TGG | - | chr2_2:7149458-7149477 | None:intergenic | 25.0% |
| !! | AAAATGAGAATTTTCAGAGA+GGG | - | chr2_2:7149978-7149997 | None:intergenic | 25.0% |
| !! | TAAAATGAGAATTTTCAGAG+AGG | - | chr2_2:7149979-7149998 | None:intergenic | 25.0% |
| !!! | CTCTGAAAATTCTCATTTTA+AGG | + | chr2_2:7149979-7149998 | Msa0234410:intron | 25.0% |
| ! | ATAATTCAATTCTCTGTACA+TGG | + | chr2_2:7150259-7150278 | Msa0234410:intron | 25.0% |
| ! | AAATCGTAATAGTTACATGA+AGG | + | chr2_2:7150497-7150516 | Msa0234410:intron | 25.0% |
| !! | GTTGTTTCAATTTCAATCTA+TGG | + | chr2_2:7150531-7150550 | Msa0234410:intron | 25.0% |
| ! | CACAATCTAAACTAAAAACT+AGG | - | chr2_2:7150615-7150634 | None:intergenic | 25.0% |
| ! | TTTGTTGCAGTGATAAATAA+GGG | + | chr2_2:7150638-7150657 | Msa0234410:intron | 25.0% |
| !!! | TCTTTTTGTTATTGTGTTAG+TGG | + | chr2_2:7150736-7150755 | Msa0234410:intron | 25.0% |
| !! | TGAAAAGGAAAAAGTATACA+GGG | - | chr2_2:7150903-7150922 | None:intergenic | 25.0% |
| !! | TTGAAAAGGAAAAAGTATAC+AGG | - | chr2_2:7150904-7150923 | None:intergenic | 25.0% |
| TTGCATTGTATTGCATTTCT+AGG | - | chr2_2:7147268-7147287 | None:intergenic | 30.0% | |
| AAACACTAATAAGTGAGTGT+TGG | - | chr2_2:7147297-7147316 | None:intergenic | 30.0% | |
| GAAAAAGATGTTACTAGAGA+CGG | + | chr2_2:7147404-7147423 | Msa0234410:CDS | 30.0% | |
| ! | TCACTTGATATTATTGGTCT+TGG | + | chr2_2:7147821-7147840 | Msa0234410:CDS | 30.0% |
| !! | ATATTATTGGTCTTGGAACA+GGG | + | chr2_2:7147828-7147847 | Msa0234410:CDS | 30.0% |
| TTAAGTTTCTTCTCGAATTC+AGG | - | chr2_2:7147854-7147873 | None:intergenic | 30.0% | |
| AAAATACCTGCTTGTTTGTT+TGG | + | chr2_2:7148009-7148028 | Msa0234410:intron | 30.0% | |
| AAATACCTGCTTGTTTGTTT+GGG | + | chr2_2:7148010-7148029 | Msa0234410:intron | 30.0% | |
| TGTATGTGAATTATGTGGTA+AGG | + | chr2_2:7148570-7148589 | Msa0234410:intron | 30.0% | |
| ! | CTTTATGAATTGTTTTCCAC+AGG | + | chr2_2:7148737-7148756 | Msa0234410:intron | 30.0% |
| ACTATATGTTGAAGCTATCT+TGG | - | chr2_2:7148783-7148802 | None:intergenic | 30.0% | |
| CAGTGTAAGGAATTGAATAT+GGG | + | chr2_2:7148836-7148855 | Msa0234410:CDS | 30.0% | |
| TAAACACAGATGAATAGGTT+GGG | - | chr2_2:7149007-7149026 | None:intergenic | 30.0% | |
| ATAAACACAGATGAATAGGT+TGG | - | chr2_2:7149008-7149027 | None:intergenic | 30.0% | |
| ! | CATTACAGCGTTTTTATACT+TGG | - | chr2_2:7149354-7149373 | None:intergenic | 30.0% |
| CAAGTATAAAAACGCTGTAA+TGG | + | chr2_2:7149352-7149371 | Msa0234410:intron | 30.0% | |
| !!! | AAGGTTATTGCTTTTTGCAA+GGG | + | chr2_2:7149508-7149527 | Msa0234410:intron | 30.0% |
| ! | CTATTGCACTTGACTTTTAT+TGG | - | chr2_2:7149828-7149847 | None:intergenic | 30.0% |
| ! | AAATGAGAATTTTCAGAGAG+GGG | - | chr2_2:7149977-7149996 | None:intergenic | 30.0% |
| ATAGCATATCTGCAACAATA+AGG | - | chr2_2:7150156-7150175 | None:intergenic | 30.0% | |
| GTAGTTAAATAGTAGATCTG+CGG | - | chr2_2:7150229-7150248 | None:intergenic | 30.0% | |
| ! | ATTCTATGGATTACCTTTAC+AGG | + | chr2_2:7150289-7150308 | Msa0234410:intron | 30.0% |
| ! | TTCTATGGATTACCTTTACA+GGG | + | chr2_2:7150290-7150309 | Msa0234410:intron | 30.0% |
| AATGTAAAGTGCAATTCAGA+TGG | - | chr2_2:7150460-7150479 | None:intergenic | 30.0% | |
| TTACATGAAGGTCATATTGT+TGG | + | chr2_2:7150509-7150528 | Msa0234410:intron | 30.0% | |
| TCAATCTATGGATAACTTGA+TGG | + | chr2_2:7150543-7150562 | Msa0234410:intron | 30.0% | |
| CAATCTATGGATAACTTGAT+GGG | + | chr2_2:7150544-7150563 | Msa0234410:intron | 30.0% | |
| ! | GTTTGTTGCAGTGATAAATA+AGG | + | chr2_2:7150637-7150656 | Msa0234410:intron | 30.0% |
| !!! | TTTTGTTATTGTGTTAGTGG+TGG | + | chr2_2:7150739-7150758 | Msa0234410:intron | 30.0% |
| TGAGCTCATGAAATTTGATA+TGG | + | chr2_2:7150795-7150814 | Msa0234410:CDS | 30.0% | |
| GAGCTCATGAAATTTGATAT+GGG | + | chr2_2:7150796-7150815 | Msa0234410:CDS | 30.0% | |
| AGTTTAAATGTGGAGAAGTG+AGG | + | chr2_2:7147145-7147164 | Msa0234410:intron | 35.0% | |
| GATATTGCATTGTATATGCG+GGG | - | chr2_2:7147192-7147211 | None:intergenic | 35.0% | |
| GGATATTGCATTGTATATGC+GGG | - | chr2_2:7147193-7147212 | None:intergenic | 35.0% | |
| GGGATATTGCATTGTATATG+CGG | - | chr2_2:7147194-7147213 | None:intergenic | 35.0% | |
| !! | TGAGTTTAGCTCTCTTGATA+GGG | - | chr2_2:7147214-7147233 | None:intergenic | 35.0% |
| ! | AGTAACATCTTTTTCCGTCA+CGG | - | chr2_2:7147399-7147418 | None:intergenic | 35.0% |
| AGAACACTGGACTCTAAATT+GGG | + | chr2_2:7147455-7147474 | Msa0234410:CDS | 35.0% | |
| ATATCAAGTGATTTAAGGGC+CGG | - | chr2_2:7147812-7147831 | None:intergenic | 35.0% | |
| !! | GATATTATTGGTCTTGGAAC+AGG | + | chr2_2:7147827-7147846 | Msa0234410:CDS | 35.0% |
| GAGAAGAAACTTAAGTATGC+AGG | + | chr2_2:7147860-7147879 | Msa0234410:CDS | 35.0% | |
| !! | GTATCTTCTGGAATCATTCT+TGG | + | chr2_2:7147887-7147906 | Msa0234410:CDS | 35.0% |
| !! | TTCTGGAATCATTCTTGGAA+GGG | + | chr2_2:7147892-7147911 | Msa0234410:CDS | 35.0% |
| TTAATACGAAGTTACCTACC+TGG | - | chr2_2:7147950-7147969 | None:intergenic | 35.0% | |
| GTTATCGAACTTCAGAGTTT+AGG | + | chr2_2:7148035-7148054 | Msa0234410:intron | 35.0% | |
| GAAAAGAAGATGGAGAGAAT+AGG | + | chr2_2:7148505-7148524 | Msa0234410:intron | 35.0% | |
| GCGTTTGTATGTGAATTATG+TGG | + | chr2_2:7148565-7148584 | Msa0234410:intron | 35.0% | |
| ATGTGAATTATGTGGTAAGG+AGG | + | chr2_2:7148573-7148592 | Msa0234410:intron | 35.0% | |
| AATCGCTTATTCTTTGTTGG+TGG | - | chr2_2:7148671-7148690 | None:intergenic | 35.0% | |
| CCAAATCGCTTATTCTTTGT+TGG | - | chr2_2:7148674-7148693 | None:intergenic | 35.0% | |
| CCAACAAAGAATAAGCGATT+TGG | + | chr2_2:7148671-7148690 | Msa0234410:intron | 35.0% | |
| !! | ATTGTTTTCCACAGGAGTAT+TGG | + | chr2_2:7148745-7148764 | Msa0234410:intron | 35.0% |
| ! | TGTTTTCACTGCCAAAGTAT+TGG | + | chr2_2:7148805-7148824 | Msa0234410:CDS | 35.0% |
| GCAGTGTAAGGAATTGAATA+TGG | + | chr2_2:7148835-7148854 | Msa0234410:CDS | 35.0% | |
| ATTGAATATGGGATCCTATC+TGG | + | chr2_2:7148847-7148866 | Msa0234410:CDS | 35.0% | |
| TAACACAGATGGATAAACTG+AGG | - | chr2_2:7148899-7148918 | None:intergenic | 35.0% | |
| ! | TTGGTGGTTTATAACACAGA+TGG | - | chr2_2:7148910-7148929 | None:intergenic | 35.0% |
| !! | AATGTCAAGTTGGCATTAGT+TGG | + | chr2_2:7148941-7148960 | Msa0234410:CDS | 35.0% |
| AAGTTGGCATTAGTTGGAAA+AGG | + | chr2_2:7148947-7148966 | Msa0234410:CDS | 35.0% | |
| !! | GAAAAGGTTTGACTTTTGAC+AGG | + | chr2_2:7148963-7148982 | Msa0234410:CDS | 35.0% |
| ATAGACACTTGACACTTGTT+AGG | + | chr2_2:7149116-7149135 | Msa0234410:intron | 35.0% | |
| ! | TAGACACTTGACACTTGTTA+GGG | + | chr2_2:7149117-7149136 | Msa0234410:intron | 35.0% |
| !! | TGAGTATTGAGTATCAACAG+TGG | + | chr2_2:7149153-7149172 | Msa0234410:intron | 35.0% |
| AATAACCTTCGAATGCAGAT+GGG | - | chr2_2:7149497-7149516 | None:intergenic | 35.0% | |
| !!! | GAAGGTTATTGCTTTTTGCA+AGG | + | chr2_2:7149507-7149526 | Msa0234410:intron | 35.0% |
| ! | CTTTTTGCAAGGGATACTTT+TGG | + | chr2_2:7149518-7149537 | Msa0234410:intron | 35.0% |
| ATAGCAAACCAAGAGTTTGA+AGG | + | chr2_2:7149851-7149870 | Msa0234410:intron | 35.0% | |
| TAGCAAACCAAGAGTTTGAA+GGG | + | chr2_2:7149852-7149871 | Msa0234410:intron | 35.0% | |
| ! | TTTTGTTCCCTTCAAACTCT+TGG | - | chr2_2:7149862-7149881 | None:intergenic | 35.0% |
| GGGAACAAAAAAGAAACAGA+AGG | + | chr2_2:7149872-7149891 | Msa0234410:intron | 35.0% | |
| AAAAGAAACAGAAGGAATCC+TGG | + | chr2_2:7149880-7149899 | Msa0234410:intron | 35.0% | |
| AAAGAAACAGAAGGAATCCT+GGG | + | chr2_2:7149881-7149900 | Msa0234410:intron | 35.0% | |
| ! | AATGAGAATTTTCAGAGAGG+GGG | - | chr2_2:7149976-7149995 | None:intergenic | 35.0% |
| AGGACACAATACAACCTATT+GGG | - | chr2_2:7150042-7150061 | None:intergenic | 35.0% | |
| AAGGACACAATACAACCTAT+TGG | - | chr2_2:7150043-7150062 | None:intergenic | 35.0% | |
| AAAGTGCAATTCAGATGGTA+TGG | - | chr2_2:7150455-7150474 | None:intergenic | 35.0% | |
| TACAATATAAAGACAGGACC+TGG | + | chr2_2:7150763-7150782 | Msa0234410:CDS | 35.0% | |
| CTCATGAAATTTGATATGGG+TGG | + | chr2_2:7150799-7150818 | Msa0234410:CDS | 35.0% | |
| ATTGGTCAAATCAAACCTCT+TGG | + | chr2_2:7150853-7150872 | Msa0234410:CDS | 35.0% | |
| !! | GTGAGTTTAGCTCTCTTGAT+AGG | - | chr2_2:7147215-7147234 | None:intergenic | 40.0% |
| ! | GAAGATATCTTTTGCAGCGA+AGG | + | chr2_2:7147325-7147344 | Msa0234410:intron | 40.0% |
| GAAGGATACTGATACTGATG+TGG | + | chr2_2:7147343-7147362 | Msa0234410:CDS | 40.0% | |
| GTGTTCTCAATATCGGATTC+TGG | - | chr2_2:7147442-7147461 | None:intergenic | 40.0% | |
| GAATCCGATATTGAGAACAC+TGG | + | chr2_2:7147442-7147461 | Msa0234410:CDS | 40.0% | |
| GAGTCCAGTGTTCTCAATAT+CGG | - | chr2_2:7147449-7147468 | None:intergenic | 40.0% | |
| GAGAACACTGGACTCTAAAT+TGG | + | chr2_2:7147454-7147473 | Msa0234410:CDS | 40.0% | |
| ! | TTTTCCAGTGAAGTCCTCTT+CGG | - | chr2_2:7147504-7147523 | None:intergenic | 40.0% |
| TAGAACAACGACAGCAACAT+GGG | - | chr2_2:7147681-7147700 | None:intergenic | 40.0% | |
| !! | GTTGTTCTACCCACTTTTCA+AGG | + | chr2_2:7147692-7147711 | Msa0234410:CDS | 40.0% |
| TATGCAGGAGATGTATCTTC+TGG | + | chr2_2:7147875-7147894 | Msa0234410:CDS | 40.0% | |
| !! | CTTCTGGAATCATTCTTGGA+AGG | + | chr2_2:7147891-7147910 | Msa0234410:CDS | 40.0% |
| !! | ATTCGATGGGTTGTAACTGT+TGG | + | chr2_2:7148334-7148353 | Msa0234410:intron | 40.0% |
| TGAGATTTCGCATGTCTGTA+TGG | + | chr2_2:7148364-7148383 | Msa0234410:intron | 40.0% | |
| ! | ATCTCGTAGTTTGTAGAGCA+AGG | + | chr2_2:7148478-7148497 | Msa0234410:intron | 40.0% |
| ! | GTAGTTTGTAGAGCAAGGAA+TGG | + | chr2_2:7148483-7148502 | Msa0234410:intron | 40.0% |
| GCAAGGAATGGAAAAGAAGA+TGG | + | chr2_2:7148495-7148514 | Msa0234410:intron | 40.0% | |
| TGAATTATGTGGTAAGGAGG+AGG | + | chr2_2:7148576-7148595 | Msa0234410:intron | 40.0% | |
| GAATTATGTGGTAAGGAGGA+GGG | + | chr2_2:7148577-7148596 | Msa0234410:intron | 40.0% | |
| AATTATGTGGTAAGGAGGAG+GGG | + | chr2_2:7148578-7148597 | Msa0234410:intron | 40.0% | |
| TAGAGAGCTGGGAAATATTG+AGG | + | chr2_2:7148610-7148629 | Msa0234410:intron | 40.0% | |
| CTGTGTTATAAACCACCAAC+TGG | + | chr2_2:7148911-7148930 | Msa0234410:CDS | 40.0% | |
| AATGCCAACTTGACATTGAC+AGG | - | chr2_2:7148938-7148957 | None:intergenic | 40.0% | |
| !! | CAGATGAATAGGTTGGGTTT+TGG | - | chr2_2:7149001-7149020 | None:intergenic | 40.0% |
| GGTTTATCCATTGAAGAGTC+TGG | + | chr2_2:7149189-7149208 | Msa0234410:intron | 40.0% | |
| CACAAAATGAAGTACAGGAG+CGG | + | chr2_2:7149380-7149399 | Msa0234410:intron | 40.0% | |
| GGCTAAAATAGCTGTTGTTG+CGG | + | chr2_2:7149414-7149433 | Msa0234410:intron | 40.0% | |
| AAAAACCCATCTGCATTCGA+AGG | + | chr2_2:7149489-7149508 | Msa0234410:intron | 40.0% | |
| CAATAACCTTCGAATGCAGA+TGG | - | chr2_2:7149498-7149517 | None:intergenic | 40.0% | |
| !! | TTCATTTTTCACTCTCTCCC+TGG | + | chr2_2:7149602-7149621 | Msa0234410:intron | 40.0% |
| ! | TCTCAGACAAACTGGCTTAA+GGG | - | chr2_2:7149935-7149954 | None:intergenic | 40.0% |
| ! | TTCTCAGACAAACTGGCTTA+AGG | - | chr2_2:7149936-7149955 | None:intergenic | 40.0% |
| TCGGAATTTCTCAGACAAAC+TGG | - | chr2_2:7149943-7149962 | None:intergenic | 40.0% | |
| TAGGCGCAATTTAACAGTTG+TGG | - | chr2_2:7150115-7150134 | None:intergenic | 40.0% | |
| TAAATTGCGCCTACCACTAT+AGG | + | chr2_2:7150122-7150141 | Msa0234410:intron | 40.0% | |
| ! | CTATGGATAACTTGATGGGT+TGG | + | chr2_2:7150548-7150567 | Msa0234410:intron | 40.0% |
| GGTGGCTACAATATAAAGAC+AGG | + | chr2_2:7150757-7150776 | Msa0234410:CDS | 40.0% | |
| GAGCTCGCACAGTTTAAATG+TGG | + | chr2_2:7147135-7147154 | Msa0234410:intron | 45.0% | |
| GGATACTGATACTGATGTGG+CGG | + | chr2_2:7147346-7147365 | Msa0234410:CDS | 45.0% | |
| ACACTGGACTCTAAATTGGG+CGG | + | chr2_2:7147458-7147477 | Msa0234410:CDS | 45.0% | |
| TCTAAATTGGGCGGTCTGTT+AGG | + | chr2_2:7147467-7147486 | Msa0234410:CDS | 45.0% | |
| GAGGACTTCACTGGAAAACT+TGG | + | chr2_2:7147506-7147525 | Msa0234410:CDS | 45.0% | |
| !! | AGACTCACCGAGGGTTTTAA+AGG | - | chr2_2:7147627-7147646 | None:intergenic | 45.0% |
| GTAGAACAACGACAGCAACA+TGG | - | chr2_2:7147682-7147701 | None:intergenic | 45.0% | |
| GCAGAGAGTCCTTGAAAAGT+GGG | - | chr2_2:7147704-7147723 | None:intergenic | 45.0% | |
| GATTGCAGAAGCAATGCTAG+GGG | - | chr2_2:7147726-7147745 | None:intergenic | 45.0% | |
| CGATTGCAGAAGCAATGCTA+GGG | - | chr2_2:7147727-7147746 | None:intergenic | 45.0% | |
| ! | TTTAAGGGCCGGTTTCTTCT+TGG | - | chr2_2:7147801-7147820 | None:intergenic | 45.0% |
| TACCTGCTTGTTTGTTTGGG+AGG | + | chr2_2:7148013-7148032 | Msa0234410:intron | 45.0% | |
| AACCTCCCAAACAAACAAGC+AGG | - | chr2_2:7148018-7148037 | None:intergenic | 45.0% | |
| !! | TGCTCTTTGAAGCCAAAACC+AGG | + | chr2_2:7148194-7148213 | Msa0234410:intron | 45.0% |
| TTTGTATGCCTGAATGCACC+TGG | - | chr2_2:7148215-7148234 | None:intergenic | 45.0% | |
| GCATGTCTGTATGGTTCATG+AGG | + | chr2_2:7148373-7148392 | Msa0234410:intron | 45.0% | |
| TTCTTCTGCCAATACTCCTG+TGG | - | chr2_2:7148756-7148775 | None:intergenic | 45.0% | |
| CTGCTCAGCATCCAATACTT+TGG | - | chr2_2:7148819-7148838 | None:intergenic | 45.0% | |
| ATTGGATGCTGAGCAGTGTA+AGG | + | chr2_2:7148823-7148842 | Msa0234410:CDS | 45.0% | |
| !! | AAACTGAGGAGGATTTGCTG+AGG | - | chr2_2:7148885-7148904 | None:intergenic | 45.0% |
| CACAGATGGATAAACTGAGG+AGG | - | chr2_2:7148896-7148915 | None:intergenic | 45.0% | |
| TTGACATTGACAGGTCCAGT+TGG | - | chr2_2:7148929-7148948 | None:intergenic | 45.0% | |
| TGGACCTGTCAATGTCAAGT+TGG | + | chr2_2:7148931-7148950 | Msa0234410:CDS | 45.0% | |
| ATTGAGTATCAACAGTGGCG+TGG | + | chr2_2:7149158-7149177 | Msa0234410:intron | 45.0% | |
| TTGTCAATGCCACCCAGATA+GGG | + | chr2_2:7149317-7149336 | Msa0234410:intron | 45.0% | |
| ACAGGAGCGGTTTAGTGTTA+CGG | + | chr2_2:7149393-7149412 | Msa0234410:intron | 45.0% | |
| AAAATAGCTGTTGTTGCGGC+AGG | + | chr2_2:7149418-7149437 | Msa0234410:intron | 45.0% | |
| AGAGTAAGATAGAGTGCGTG+AGG | - | chr2_2:7149578-7149597 | None:intergenic | 45.0% | |
| CAACTAGTTGTGACTGACCA+GGG | - | chr2_2:7149622-7149641 | None:intergenic | 45.0% | |
| ACAACTAGTTGTGACTGACC+AGG | - | chr2_2:7149623-7149642 | None:intergenic | 45.0% | |
| AAAAACGCTAGTGTGACAGC+TGG | - | chr2_2:7149716-7149735 | None:intergenic | 45.0% | |
| ! | AGCTGTCACACTAGCGTTTT+TGG | + | chr2_2:7149715-7149734 | Msa0234410:intron | 45.0% |
| ! | GCTGTCACACTAGCGTTTTT+GGG | + | chr2_2:7149716-7149735 | Msa0234410:intron | 45.0% |
| TCGTTTGATGCTTTCATCCC+AGG | - | chr2_2:7149901-7149920 | None:intergenic | 45.0% | |
| ! | GAATTTTCAGAGAGGGGGTA+GGG | - | chr2_2:7149971-7149990 | None:intergenic | 45.0% |
| ! | AGAATTTTCAGAGAGGGGGT+AGG | - | chr2_2:7149972-7149991 | None:intergenic | 45.0% |
| GCCTACCACTATAGGTTTGA+GGG | + | chr2_2:7150130-7150149 | Msa0234410:intron | 45.0% | |
| TAAGGCCCTCAAACCTATAG+TGG | - | chr2_2:7150138-7150157 | None:intergenic | 45.0% | |
| GGATTACCTTTACAGGGTAC+TGG | + | chr2_2:7150296-7150315 | Msa0234410:intron | 45.0% | |
| AAGGATCCAGTACCCTGTAA+AGG | - | chr2_2:7150305-7150324 | None:intergenic | 45.0% | |
| ! | AAGGAGAAGCGCAGTTCATA+CGG | - | chr2_2:7150329-7150348 | None:intergenic | 45.0% |
| ATGAGCTCAATCATACAGCC+AGG | - | chr2_2:7150784-7150803 | None:intergenic | 45.0% | |
| !!! | TGCAGTTTTTGGAGCAGCAA+AGG | + | chr2_2:7150828-7150847 | Msa0234410:CDS | 45.0% |
| ! | TTTGGAGCAGCAAAGGCTAT+TGG | + | chr2_2:7150835-7150854 | Msa0234410:CDS | 45.0% |
| AATCAAACCTCTTGGAGTCG+AGG | + | chr2_2:7150861-7150880 | Msa0234410:CDS | 45.0% | |
| !!! | TATATACAAATTTTAAAATA+GGG | + | chr2_2:7149686-7149705 | Msa0234410:intron | 5.0% |
| ! | GAGGAGGCATAATGAGGTTG+CGG | - | chr2_2:7147023-7147042 | None:intergenic | 50.0% |
| AAACAAACGCACGGACCTTG+GGG | - | chr2_2:7147086-7147105 | None:intergenic | 50.0% | |
| GAAACAAACGCACGGACCTT+GGG | - | chr2_2:7147087-7147106 | None:intergenic | 50.0% | |
| AGAAACAAACGCACGGACCT+TGG | - | chr2_2:7147088-7147107 | None:intergenic | 50.0% | |
| ! | CTGTGCGAGCTCTAACAACT+AGG | - | chr2_2:7147127-7147146 | None:intergenic | 50.0% |
| ! | CTGATACTGATGTGGCGGAA+TGG | + | chr2_2:7147351-7147370 | Msa0234410:CDS | 50.0% |
| ! | ACTGATGTGGCGGAATGGAA+AGG | + | chr2_2:7147356-7147375 | Msa0234410:CDS | 50.0% |
| ! | CTGATGTGGCGGAATGGAAA+GGG | + | chr2_2:7147357-7147376 | Msa0234410:CDS | 50.0% |
| ! | TGATGTGGCGGAATGGAAAG+GGG | + | chr2_2:7147358-7147377 | Msa0234410:CDS | 50.0% |
| CCTATTAGCAGTTGCCGTGA+CGG | + | chr2_2:7147382-7147401 | Msa0234410:CDS | 50.0% | |
| GTCCAGCAGCAGGTGTAATT+CGG | - | chr2_2:7147547-7147566 | None:intergenic | 50.0% | |
| ATTACACCTGCTGCTGGACT+TGG | + | chr2_2:7147548-7147567 | Msa0234410:CDS | 50.0% | |
| CGGCAGTAGAGGAAACAGAT+GGG | - | chr2_2:7147604-7147623 | None:intergenic | 50.0% | |
| !!! | GGTTTTAAAGGCGGCAGTAG+AGG | - | chr2_2:7147615-7147634 | None:intergenic | 50.0% |
| !! | ACTGCCGCCTTTAAAACCCT+CGG | + | chr2_2:7147617-7147636 | Msa0234410:CDS | 50.0% |
| !!! | CTCACCGAGGGTTTTAAAGG+CGG | - | chr2_2:7147624-7147643 | None:intergenic | 50.0% |
| AGAAGCAACAGACTCACCGA+GGG | - | chr2_2:7147636-7147655 | None:intergenic | 50.0% | |
| GGCAGAGAGTCCTTGAAAAG+TGG | - | chr2_2:7147705-7147724 | None:intergenic | 50.0% | |
| GCGATTGCAGAAGCAATGCT+AGG | - | chr2_2:7147728-7147747 | None:intergenic | 50.0% | |
| ATTGCTTCTGCAATCGCCAC+TGG | + | chr2_2:7147731-7147750 | Msa0234410:CDS | 50.0% | |
| TTGCTTCTGCAATCGCCACT+GGG | + | chr2_2:7147732-7147751 | Msa0234410:CDS | 50.0% | |
| GACTGTCGTGGGAACATTTG+AGG | + | chr2_2:7147754-7147773 | Msa0234410:CDS | 50.0% | |
| GTCCGAGTCCAAGAAGAAAC+CGG | + | chr2_2:7147790-7147809 | Msa0234410:CDS | 50.0% | |
| CTACCTGGTGTGAGCACATT+AGG | - | chr2_2:7147935-7147954 | None:intergenic | 50.0% | |
| CTAATGTGCTCACACCAGGT+AGG | + | chr2_2:7147933-7147952 | Msa0234410:intron | 50.0% | |
| AGCCAAAACCAGGTGCATTC+AGG | + | chr2_2:7148204-7148223 | Msa0234410:intron | 50.0% | |
| ! | TGCCTGAATGCACCTGGTTT+TGG | - | chr2_2:7148209-7148228 | None:intergenic | 50.0% |
| ACATTGACAGGTCCAGTTGG+TGG | - | chr2_2:7148926-7148945 | None:intergenic | 50.0% | |
| !! | AACAGTGGCGTGGTTTTGCA+TGG | + | chr2_2:7149168-7149187 | Msa0234410:intron | 50.0% |
| TGGTGCACCAGACTCTTCAA+TGG | - | chr2_2:7149199-7149218 | None:intergenic | 50.0% | |
| GTTGTCAATGCCACCCAGAT+AGG | + | chr2_2:7149316-7149335 | Msa0234410:intron | 50.0% | |
| TGTCAATGCCACCCAGATAG+GGG | + | chr2_2:7149318-7149337 | Msa0234410:intron | 50.0% | |
| CGCCTACCACTATAGGTTTG+AGG | + | chr2_2:7150129-7150148 | Msa0234410:intron | 50.0% | |
| GCCCTCAAACCTATAGTGGT+AGG | - | chr2_2:7150134-7150153 | None:intergenic | 50.0% | |
| GATCTGCGGTGCAATGCAAT+GGG | - | chr2_2:7150215-7150234 | None:intergenic | 50.0% | |
| AGATCTGCGGTGCAATGCAA+TGG | - | chr2_2:7150216-7150235 | None:intergenic | 50.0% | |
| GAAGCGCAGTTCATACGGTA+AGG | - | chr2_2:7150324-7150343 | None:intergenic | 50.0% | |
| TGCTCTTCACCTGCTTTGTG+AGG | + | chr2_2:7150421-7150440 | Msa0234410:intron | 50.0% | |
| !! | CTTGATGGGTTGGAAGCGAT+AGG | + | chr2_2:7150558-7150577 | Msa0234410:intron | 50.0% |
| ! | GGTGGATCTGCTGCAGTTTT+TGG | + | chr2_2:7150817-7150836 | Msa0234410:CDS | 50.0% |
| TAACAGACCTCGACTCCAAG+AGG | - | chr2_2:7150871-7150890 | None:intergenic | 50.0% | |
| GGCATAATGAGGTTGCGGAC+AGG | - | chr2_2:7147018-7147037 | None:intergenic | 55.0% | |
| !! | TTGGGGGTTTCAGTGTTGGC+GGG | - | chr2_2:7147069-7147088 | None:intergenic | 55.0% |
| ! | CTTGGGGGTTTCAGTGTTGG+CGG | - | chr2_2:7147070-7147089 | None:intergenic | 55.0% |
| GACCTTGGGGGTTTCAGTGT+TGG | - | chr2_2:7147073-7147092 | None:intergenic | 55.0% | |
| AACAAACGCACGGACCTTGG+GGG | - | chr2_2:7147085-7147104 | None:intergenic | 55.0% | |
| GGTGTCCGAGGTTTGAACCT+CGG | + | chr2_2:7147166-7147185 | Msa0234410:intron | 55.0% | |
| CCGTCACGGCAACTGCTAAT+AGG | - | chr2_2:7147385-7147404 | None:intergenic | 55.0% | |
| AGTGAAGTCCTCTTCGGACG+AGG | - | chr2_2:7147498-7147517 | None:intergenic | 55.0% | |
| TCGTCCGAAGAGGACTTCAC+TGG | + | chr2_2:7147497-7147516 | Msa0234410:CDS | 55.0% | |
| CTCCGAATTACACCTGCTGC+TGG | + | chr2_2:7147542-7147561 | Msa0234410:CDS | 55.0% | |
| TTGGATCCAAGTCCAGCAGC+AGG | - | chr2_2:7147557-7147576 | None:intergenic | 55.0% | |
| TCCAAGAGACTCGCCTTGCT+TGG | + | chr2_2:7147572-7147591 | Msa0234410:CDS | 55.0% | |
| TAGAGGAAACAGATGGGCCG+AGG | - | chr2_2:7147598-7147617 | None:intergenic | 55.0% | |
| GCGGCAGTAGAGGAAACAGA+TGG | - | chr2_2:7147605-7147624 | None:intergenic | 55.0% | |
| CAGAAGCAACAGACTCACCG+AGG | - | chr2_2:7147637-7147656 | None:intergenic | 55.0% | |
| TTCTGCAGCTAACTCCGCTC+AGG | + | chr2_2:7147652-7147671 | Msa0234410:CDS | 55.0% | |
| ! | GGCCGGTTTCTTCTTGGACT+CGG | - | chr2_2:7147795-7147814 | None:intergenic | 55.0% |
| CCTGGTGTGAGCACATTAGG+CGG | - | chr2_2:7147932-7147951 | None:intergenic | 55.0% | |
| GCTTCGATGTGCCCCTATCT+GGG | - | chr2_2:7149332-7149351 | None:intergenic | 55.0% | |
| ATAGCTGTTGTTGCGGCAGG+CGG | + | chr2_2:7149421-7149440 | Msa0234410:intron | 55.0% | |
| ! | GAGAGGGGGTAGGGTCTTTT+CGG | - | chr2_2:7149962-7149981 | None:intergenic | 55.0% |
| AACCTATTGGGCCGCACAGT+GGG | - | chr2_2:7150030-7150049 | None:intergenic | 55.0% | |
| ATCGACGCGTCGCAGATTGA+AGG | - | chr2_2:7150091-7150110 | None:intergenic | 55.0% | |
| TCACCTGCTTTGTGAGGCTC+AGG | + | chr2_2:7150427-7150446 | Msa0234410:intron | 55.0% | |
| GTTGCGGACAGGTACTTCGC+GGG | - | chr2_2:7147007-7147026 | None:intergenic | 60.0% | |
| GGTTGCGGACAGGTACTTCG+CGG | - | chr2_2:7147008-7147027 | None:intergenic | 60.0% | |
| ! | TGGCGCGAGGAGGCATAATG+AGG | - | chr2_2:7147029-7147048 | None:intergenic | 60.0% |
| GGGGTGAGTGAAGCCAAGAG+TGG | - | chr2_2:7147049-7147068 | None:intergenic | 60.0% | |
| !! | TGGGGGTTTCAGTGTTGGCG+GGG | - | chr2_2:7147068-7147087 | None:intergenic | 60.0% |
| CGCCAACACTGAAACCCCCA+AGG | + | chr2_2:7147068-7147087 | Msa0234410:CDS | 60.0% | |
| ! | GTGGAGAAGTGAGGTGTCCG+AGG | + | chr2_2:7147154-7147173 | Msa0234410:intron | 60.0% |
| GCATTGTATATGCGGGGCCG+AGG | - | chr2_2:7147186-7147205 | None:intergenic | 60.0% | |
| AGGTGAAGCCTCGTCCGAAG+AGG | + | chr2_2:7147487-7147506 | Msa0234410:CDS | 60.0% | |
| GCCAAGCAAGGCGAGTCTCT+TGG | - | chr2_2:7147576-7147595 | None:intergenic | 60.0% | |
| AGACTCGCCTTGCTTGGCCT+CGG | + | chr2_2:7147578-7147597 | Msa0234410:CDS | 60.0% | |
| AGCAACATGGGCAGCCTGAG+CGG | - | chr2_2:7147669-7147688 | None:intergenic | 60.0% | |
| AATCGCCACTGGGACTGTCG+TGG | + | chr2_2:7147742-7147761 | Msa0234410:CDS | 60.0% | |
| ATCGCCACTGGGACTGTCGT+GGG | + | chr2_2:7147743-7147762 | Msa0234410:CDS | 60.0% | |
| TGTTCCCACGACAGTCCCAG+TGG | - | chr2_2:7147750-7147769 | None:intergenic | 60.0% | |
| CCGCCTAATGTGCTCACACC+AGG | + | chr2_2:7147929-7147948 | Msa0234410:CDS | 60.0% | |
| !! | GGCGCTGATGCTAGAGAGCT+GGG | + | chr2_2:7148599-7148618 | Msa0234410:intron | 60.0% |
| GGCTGCAGCAACAGCCAGAT+AGG | - | chr2_2:7148864-7148883 | None:intergenic | 60.0% | |
| TCGATGTGCCCCTATCTGGG+TGG | - | chr2_2:7149329-7149348 | None:intergenic | 60.0% | |
| GGCTTCGATGTGCCCCTATC+TGG | - | chr2_2:7149333-7149352 | None:intergenic | 60.0% | |
| TTAGGGTCCCTCCCACTGTG+CGG | + | chr2_2:7150016-7150035 | Msa0234410:intron | 60.0% | |
| TATTGGGCCGCACAGTGGGA+GGG | - | chr2_2:7150026-7150045 | None:intergenic | 60.0% | |
| CAACCTATTGGGCCGCACAG+TGG | - | chr2_2:7150031-7150050 | None:intergenic | 60.0% | |
| GAGCCTGAGCCTCACAAAGC+AGG | - | chr2_2:7150433-7150452 | None:intergenic | 60.0% | |
| ATGCCTCCTCGCGCCACTCT+TGG | + | chr2_2:7147033-7147052 | Msa0234410:CDS | 65.0% | |
| AAGCCAAGAGTGGCGCGAGG+AGG | - | chr2_2:7147039-7147058 | None:intergenic | 65.0% | |
| GTGAAGCCAAGAGTGGCGCG+AGG | - | chr2_2:7147042-7147061 | None:intergenic | 65.0% | |
| CGGGGCCGAGGTTCAAACCT+CGG | - | chr2_2:7147174-7147193 | None:intergenic | 65.0% | |
| AGATGGGCCGAGGCCAAGCA+AGG | - | chr2_2:7147588-7147607 | None:intergenic | 65.0% | |
| !! | GGGCGCTGATGCTAGAGAGC+TGG | + | chr2_2:7148598-7148617 | Msa0234410:intron | 65.0% |
| CTATTGGGCCGCACAGTGGG+AGG | - | chr2_2:7150027-7150046 | None:intergenic | 65.0% | |
| CTCCCACTGTGCGGCCCAAT+AGG | + | chr2_2:7150025-7150044 | Msa0234410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7146994 | 7150972 | 7146994 | ID=Msa0234410;Name=Msa0234410 |
| chr2_2 | mRNA | 7146994 | 7150972 | 7146994 | ID=Msa0234410-mRNA-1;Parent=Msa0234410;Name=Msa0234410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39|1|1|1|0.33|0.5|4|30|363 |
| chr2_2 | exon | 7146994 | 7147089 | 7146994 | ID=Msa0234410-mRNA-1:exon:3052;Parent=Msa0234410-mRNA-1 |
| chr2_2 | exon | 7147329 | 7147950 | 7147329 | ID=Msa0234410-mRNA-1:exon:3053;Parent=Msa0234410-mRNA-1 |
| chr2_2 | exon | 7148759 | 7148984 | 7148759 | ID=Msa0234410-mRNA-1:exon:3054;Parent=Msa0234410-mRNA-1 |
| chr2_2 | exon | 7150756 | 7150972 | 7150756 | ID=Msa0234410-mRNA-1:exon:3055;Parent=Msa0234410-mRNA-1 |
| chr2_2 | five_prime_UTR | 7146994 | 7147032 | 7146994 | ID=Msa0234410-mRNA-1:five_prime_utr;Parent=Msa0234410-mRNA-1 |
| chr2_2 | CDS | 7147033 | 7147089 | 7147033 | ID=Msa0234410-mRNA-1:cds;Parent=Msa0234410-mRNA-1 |
| chr2_2 | CDS | 7147329 | 7147950 | 7147329 | ID=Msa0234410-mRNA-1:cds;Parent=Msa0234410-mRNA-1 |
| chr2_2 | CDS | 7148759 | 7148984 | 7148759 | ID=Msa0234410-mRNA-1:cds;Parent=Msa0234410-mRNA-1 |
| chr2_2 | CDS | 7150756 | 7150942 | 7150756 | ID=Msa0234410-mRNA-1:cds;Parent=Msa0234410-mRNA-1 |
| chr2_2 | three_prime_UTR | 7150943 | 7150972 | 7150943 | ID=Msa0234410-mRNA-1:three_prime_utr;Parent=Msa0234410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
