AlfalfaGEDB | Msa0644850

M. sativa cultivar zhongmu-4 / Msa0644850

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	XP_013456164.1	97.701	261	6	0	1	261	1	261	0.0	525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	sp\|Q9STF9\|THA8L_ARATH	64.615	260	83	4	2	259	3	255	7.47e-117	338

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	A0A072UWE3	97.701	261	6	0	1	261	1	261	0.0	525

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0644850	0.808028	3.787663e-50	-8.615850e-47
Msa0029270	Msa0644850	0.826322	2.891500e-54	-8.615850e-47
Msa0032430	Msa0644850	0.817569	3.080292e-52	-8.615850e-47
Msa0032580	Msa0644850	0.813511	2.466969e-51	-8.615850e-47
Msa0054480	Msa0644850	0.829705	4.432030e-55	-8.615850e-47
Msa0061080	Msa0644850	0.815247	1.019288e-51	-8.615850e-47
Msa0070700	Msa0644850	0.830237	3.289194e-55	-8.615850e-47
Msa0079380	Msa0644850	0.803996	2.670179e-49	-8.615850e-47
Msa0080200	Msa0644850	0.827895	1.215034e-54	-8.615850e-47
Msa0105620	Msa0644850	0.800807	1.211965e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	MtrunA17_Chr4g0032231	97.701	261	6	0	1	261	1	261	0.0	525
Msa0644850	MtrunA17_Chr1g0160481	42.661	218	121	1	41	258	4	217	6.97e-67	207
Msa0644850	MtrunA17_Chr3g0119081	45.128	195	107	0	64	258	27	221	7.74e-67	207
Msa0644850	MtrunA17_Chr2g0329741	33.898	177	108	2	55	228	33	203	1.09e-18	82.8
Msa0644850	MtrunA17_Chr7g0236501	32.000	100	67	1	130	228	133	232	1.76e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	AT3G46870.1	64.615	260	83	4	2	259	3	255	7.59e-118	338
Msa0644850	AT3G46870.2	61.765	272	83	5	2	259	3	267	2.28e-114	329
Msa0644850	AT1G62350.2	42.661	218	122	1	43	257	20	237	5.35e-63	198
Msa0644850	AT1G62350.1	45.304	181	99	0	77	257	1	181	3.45e-58	184
Msa0644850	AT1G62350.3	44.882	127	70	0	131	257	2	128	8.81e-41	137
Msa0644850	AT5G09315.1	30.693	202	121	4	65	248	44	244	1.38e-19	85.9
Msa0644850	AT1G77340.1	31.148	122	71	2	123	232	202	322	3.54e-13	68.9
Msa0644850	AT5G12100.1	34.234	111	72	1	125	235	193	302	5.58e-13	68.9
Msa0644850	AT1G62590.2	31.731	104	70	1	130	233	384	486	8.06e-12	65.5
Msa0644850	AT1G62590.1	31.731	104	70	1	130	233	384	486	8.06e-12	65.5

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Find 83 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTACCATCATCAAGTG+AGG	0.648062	4_3:-49209348	None:intergenic
AAGCACTCTATGTGATTTCT+GGG	0.401006	4_3:+49207176	Msa0644850:CDS
AATACCACGACGGAAGACCA+AGG	0.623296	4_3:+49207116	Msa0644850:CDS
AATGGATTTGCAGGTGTTTC+AGG	0.194785	4_3:+49208134	Msa0644850:intron
AATGTCTCTGATGGGGTTGA+TGG	0.468478	4_3:-49207026	None:intergenic
AATTTGATGTGAATTGTGTG+AGG	0.645060	4_3:-49206994	None:intergenic
ACAGCTGCAAATAATTTGAT+TGG	0.328163	4_3:-49209642	None:intergenic
ACTTAATTATTGCGTTGGCA+AGG	0.512870	4_3:+49208205	Msa0644850:CDS
ACTTATACTGAAGTCATAAG+GGG	0.636269	4_3:+49208300	Msa0644850:CDS
AGAAGTTTCTCTCGCTCTCA+AGG	0.505605	4_3:+49207312	Msa0644850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACTGTATCCTTAGAAAA+TGG	+	chr4_3:49206945-49206964	Msa0644850:CDS	30.0%
AATTTGATGTGAATTGTGTG+AGG	-	chr4_3:49206997-49207016	None:intergenic	30.0%
GCAACAAACATTAAAACAGA+AGG	-	chr4_3:49207372-49207391	None:intergenic	30.0%
TCAGAATCATTACAACAAAC+AGG	-	chr4_3:49207401-49207420	None:intergenic	30.0%
CCTCAATTTAAAAAACTGAG+TGG	-	chr4_3:49207492-49207511	None:intergenic	30.0%
CTACAATCAGGGTTTAAAAA+AGG	-	chr4_3:49207634-49207653	None:intergenic	30.0%
CTTCTCAATATAGAACAGAA+GGG	-	chr4_3:49207841-49207860	None:intergenic	30.0%
TCTTCTCAATATAGAACAGA+AGG	-	chr4_3:49207842-49207861	None:intergenic	30.0%
TTCTGTTCTATATTGAGAAG+AGG	+	chr4_3:49207841-49207860	Msa0644850:intron	30.0%
AATGGGTGAAAGAGTTATTT+AGG	+	chr4_3:49207967-49207986	Msa0644850:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	49206938	49209676	49206938	ID=Msa0644850;Name=Msa0644850
chr4_3	mRNA	49206938	49209676	49206938	ID=Msa0644850-mRNA-1;Parent=Msa0644850;Name=Msa0644850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.66\|1\|0.5\|0.33\|3\|501\|261
chr4_3	exon	49206938	49207333	49206938	ID=Msa0644850-mRNA-1:exon:11700;Parent=Msa0644850-mRNA-1
chr4_3	exon	49208147	49208537	49208147	ID=Msa0644850-mRNA-1:exon:11701;Parent=Msa0644850-mRNA-1
chr4_3	exon	49209177	49209676	49209177	ID=Msa0644850-mRNA-1:exon:11702;Parent=Msa0644850-mRNA-1
chr4_3	CDS	49206938	49207333	49206938	ID=Msa0644850-mRNA-1:cds;Parent=Msa0644850-mRNA-1
chr4_3	CDS	49208147	49208536	49208147	ID=Msa0644850-mRNA-1:cds;Parent=Msa0644850-mRNA-1
chr4_3	three_prime_UTR	49208537	49208537	49208537	ID=Msa0644850-mRNA-1:three_prime_utr;Parent=Msa0644850-mRNA-1
chr4_3	three_prime_UTR	49209177	49209676	49209177	ID=Msa0644850-mRNA-1:three_prime_utr;Parent=Msa0644850-mRNA-1

Gene Sequence

>Msa0644850

ATGGCACTTCACTGTATCCTTAGAAAATGGAAAACCCATCGTTTAACCTCAGCATTCCTCACACAATTCACATCAAATTCAACAAACACCATCAACCCCATCAGAGACATTTCATCTGCATTATCTTTAACACACTTTATTACATCATTTGAACACAAAAACGTGACTGGTTTTAGAGAATACCACGACGGAAGACCAAGGGGACCCCTTTGGAGAGGAAAGAAACTCATTGGTAAAGAAGCACTCTATGTGATTTCTGGGTTGAAAAGGTTTAAAGATGACGAAGAAAAGCTTCCTAAGTTCATCAAAACTCATGTTTTAAGGTTATTGAAGATGGATTTGATCGCTGTTCTCACTGAACTTGAGCGTCAACAAGAAGTTTCTCTCGCTCTCAAGGTGTTTCAGGTGATGCAAAAGCAGGACTGGTACAAGCCTGATATATTCCTGTATAAGGACTTAATTATTGCGTTGGCAAGGGCCAAAAGAATGGACGACGTATTGCAGTTATGGGAAAGCATGAGGAAGGAGAATCTCTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAGTAGTGGATCTCCTGCAGATGCGATGAACGTATATGAGGACATGAAGAATTCTCCAGATCCACCAGAGGAGTTGCCGTTCAGAATTTTGTTGAAAGGGCTCTTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAAGAGATCTTTCCCGATTCCAGTATTTATGATCCACCACAGGAGATATTTGGCGCACGCTGA

Protein sequence

>Msa0644850

MALHCILRKWKTHRLTSAFLTQFTSNSTNTINPIRDISSALSLTHFITSFEHKNVTGFREYHDGRPRGPLWRGKKLIGKEALYVISGLKRFKDDEEKLPKFIKTHVLRLLKMDLIAVLTELERQQEVSLALKVFQVMQKQDWYKPDIFLYKDLIIALARAKRMDDVLQLWESMRKENLFPDSQTYTEVIRGFLSSGSPADAMNVYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR*