AlfalfaGEDB | Msa0644850

M. sativa cultivar zhongmu-4 / Msa0644850

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990825
PFAM: PF13041.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	XP_013456164.1	97.701	261	6	0	1	261	1	261	0.0	525

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	sp\|Q9STF9\|THA8L_ARATH	64.615	260	83	4	2	259	3	255	7.47e-117	338

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	A0A072UWE3	97.701	261	6	0	1	261	1	261	0.0	525

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0644850	0.808028	3.787663e-50	-8.615850e-47
Msa0029270	Msa0644850	0.826322	2.891500e-54	-8.615850e-47
Msa0032430	Msa0644850	0.817569	3.080292e-52	-8.615850e-47
Msa0032580	Msa0644850	0.813511	2.466969e-51	-8.615850e-47
Msa0054480	Msa0644850	0.829705	4.432030e-55	-8.615850e-47
Msa0061080	Msa0644850	0.815247	1.019288e-51	-8.615850e-47
Msa0070700	Msa0644850	0.830237	3.289194e-55	-8.615850e-47
Msa0079380	Msa0644850	0.803996	2.670179e-49	-8.615850e-47
Msa0080200	Msa0644850	0.827895	1.215034e-54	-8.615850e-47
Msa0105620	Msa0644850	0.800807	1.211965e-48	-8.615850e-47
Msa0607050	Msa0644850	0.804041	2.613078e-49	-8.615850e-47
Msa0610430	Msa0644850	0.808369	3.204199e-50	-8.615850e-47
Msa0613440	Msa0644850	0.809198	2.130392e-50	-8.615850e-47
Msa0625720	Msa0644850	0.830022	3.710119e-55	-8.615850e-47
Msa0643350	Msa0644850	0.800163	1.639848e-48	-8.615850e-47
Msa0644850	Msa0661650	0.807336	5.312470e-50	-8.615850e-47
Msa0644850	Msa0663390	0.822836	1.914003e-53	-8.615850e-47
Msa0644850	Msa0689260	0.808099	3.658230e-50	-8.615850e-47
Msa0644850	Msa0696390	0.811471	6.887968e-51	-8.615850e-47
Msa0644850	Msa0707250	0.808047	3.752927e-50	-8.615850e-47
Msa0644850	Msa0711780	0.816810	4.563582e-52	-8.615850e-47
Msa0644850	Msa0715700	0.813712	2.227462e-51	-8.615850e-47
Msa0644850	Msa0793800	0.842978	1.858284e-58	-8.615850e-47
Msa0644850	Msa0794670	0.814626	1.399626e-51	-8.615850e-47
Msa0644850	Msa0871270	0.812566	3.974541e-51	-8.615850e-47
Msa0644850	Msa0974070	0.810027	1.413838e-50	-8.615850e-47
Msa0644850	Msa1003620	0.803700	3.075711e-49	-8.615850e-47
Msa0644850	Msa1014540	0.819764	9.783308e-53	-8.615850e-47
Msa0644850	Msa1051200	0.811606	6.435836e-51	-8.615850e-47
Msa0644850	Msa1075540	0.827923	1.196489e-54	-8.615850e-47
Msa0644850	Msa1088640	0.840663	7.593668e-58	-8.615850e-47
Msa0644850	Msa1100050	0.807841	4.150133e-50	-8.615850e-47
Msa0644850	Msa1162270	0.847889	8.688566e-60	-8.615850e-47
Msa0644850	Msa1199220	0.809943	1.473643e-50	-8.615850e-47
Msa0644850	Msa1208880	0.803841	2.875453e-49	-8.615850e-47
Msa0644850	Msa1225700	0.809903	1.503497e-50	-8.615850e-47
Msa0644850	Msa1245930	0.803933	2.751581e-49	-8.615850e-47
Msa0644850	Msa1277660	0.803656	3.141298e-49	-8.615850e-47
Msa0644850	Msa1302850	0.826916	2.086508e-54	-8.615850e-47
Msa0644850	Msa1306920	0.800208	1.605029e-48	-8.615850e-47
Msa0644850	Msa1358250	0.805012	1.638994e-49	-8.615850e-47
Msa0644850	Msa1382620	0.802463	5.543004e-49	-8.615850e-47
Msa0644850	Msa1386780	0.816454	5.485479e-52	-8.615850e-47
Msa0644850	Msa1406050	0.814446	1.534707e-51	-8.615850e-47
Msa0127050	Msa0644850	0.828834	7.210898e-55	-8.615850e-47
Msa0136070	Msa0644850	0.800959	1.128269e-48	-8.615850e-47
Msa0144370	Msa0644850	0.827620	1.414610e-54	-8.615850e-47
Msa0160550	Msa0644850	0.835443	1.673110e-56	-8.615850e-47
Msa0165660	Msa0644850	0.837345	5.491159e-57	-8.615850e-47
Msa0168230	Msa0644850	0.805453	1.325289e-49	-8.615850e-47
Msa0169310	Msa0644850	0.822403	2.413259e-53	-8.615850e-47
Msa0172070	Msa0644850	0.812425	4.266450e-51	-8.615850e-47
Msa0172970	Msa0644850	0.801861	7.373671e-49	-8.615850e-47
Msa0402650	Msa0644850	0.830174	3.406281e-55	-8.615850e-47
Msa0440400	Msa0644850	0.803694	3.084730e-49	-8.615850e-47
Msa0449210	Msa0644850	0.809683	1.676408e-50	-8.615850e-47
Msa0481530	Msa0644850	0.819578	1.078832e-52	-8.615850e-47
Msa0260680	Msa0644850	0.806083	9.773297e-50	-8.615850e-47
Msa0279700	Msa0644850	0.803950	2.729902e-49	-8.615850e-47
Msa0280090	Msa0644850	0.804983	1.661977e-49	-8.615850e-47
Msa0299870	Msa0644850	0.818123	2.310018e-52	-8.615850e-47
Msa0309770	Msa0644850	0.805565	1.255426e-49	-8.615850e-47
Msa0318980	Msa0644850	0.806428	8.265946e-50	-8.615850e-47
Msa0337240	Msa0644850	0.800408	1.461612e-48	-8.615850e-47
Msa0501460	Msa0644850	0.800813	1.208261e-48	-8.615850e-47
Msa0529890	Msa0644850	0.831966	1.236817e-55	-8.615850e-47
Msa0530260	Msa0644850	0.802911	4.481493e-49	-8.615850e-47
Msa0542750	Msa0644850	0.808848	2.531745e-50	-8.615850e-47
Msa0585560	Msa0644850	0.827813	1.271794e-54	-8.615850e-47
Msa0598860	Msa0644850	0.815854	7.468850e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	MtrunA17_Chr4g0032231	97.701	261	6	0	1	261	1	261	0.0	525
Msa0644850	MtrunA17_Chr1g0160481	42.661	218	121	1	41	258	4	217	6.97e-67	207
Msa0644850	MtrunA17_Chr3g0119081	45.128	195	107	0	64	258	27	221	7.74e-67	207
Msa0644850	MtrunA17_Chr2g0329741	33.898	177	108	2	55	228	33	203	1.09e-18	82.8
Msa0644850	MtrunA17_Chr7g0236501	32.000	100	67	1	130	228	133	232	1.76e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0644850	AT3G46870.1	64.615	260	83	4	2	259	3	255	7.59e-118	338
Msa0644850	AT3G46870.2	61.765	272	83	5	2	259	3	267	2.28e-114	329
Msa0644850	AT1G62350.2	42.661	218	122	1	43	257	20	237	5.35e-63	198
Msa0644850	AT1G62350.1	45.304	181	99	0	77	257	1	181	3.45e-58	184
Msa0644850	AT1G62350.3	44.882	127	70	0	131	257	2	128	8.81e-41	137
Msa0644850	AT5G09315.1	30.693	202	121	4	65	248	44	244	1.38e-19	85.9
Msa0644850	AT1G77340.1	31.148	122	71	2	123	232	202	322	3.54e-13	68.9
Msa0644850	AT5G12100.1	34.234	111	72	1	125	235	193	302	5.58e-13	68.9
Msa0644850	AT1G62590.2	31.731	104	70	1	130	233	384	486	8.06e-12	65.5
Msa0644850	AT1G62590.1	31.731	104	70	1	130	233	384	486	8.06e-12	65.5
Msa0644850	AT3G27750.1	31.548	168	105	5	67	228	39	202	8.26e-12	63.5
Msa0644850	AT3G22470.1	32.174	115	76	2	130	244	369	481	8.93e-12	65.1

Find 83 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGCACTCTATGTGATTTC+TGG	0.159761	4_3:+49207175	Msa0644850:CDS
AATGGATTTGCAGGTGTTTC+AGG	0.194785	4_3:+49208134	Msa0644850:intron
TTCACTGTATCCTTAGAAAA+TGG	0.267406	4_3:+49206945	Msa0644850:CDS
GATCCACCACAGGAGATATT+TGG	0.271034	4_3:+49208504	Msa0644850:CDS
CAATACGTCGTCCATTCTTT+TGG	0.298621	4_3:-49208229	None:intergenic
CTTGGAGACATGGTGCATTA+TGG	0.321894	4_3:+49209183	Msa0644850:three_prime_UTR
TCAGTATAAGTCTGAGAATC+AGG	0.325064	4_3:-49208288	None:intergenic
GATCTCTAACAAGATCAATT+TGG	0.328117	4_3:-49209559	None:intergenic
ACAGCTGCAAATAATTTGAT+TGG	0.328163	4_3:-49209642	None:intergenic
GCCTGATATATTCCTGTATA+AGG	0.356145	4_3:+49208182	Msa0644850:CDS
GGCAACTCCTCTGGTGGATC+TGG	0.363516	4_3:-49208384	None:intergenic
TTCACTTTGTTTCTCAAAAG+AGG	0.379736	4_3:-49208441	None:intergenic
AGCTGGCTAGTTTGTAGATC+AGG	0.382258	4_3:+49209295	Msa0644850:three_prime_UTR
CTGTGGTGGATCATAAATAC+TGG	0.390476	4_3:-49208493	None:intergenic
TCCTTATACAGGAATATATC+AGG	0.392641	4_3:-49208183	None:intergenic
TGGACGACGTATTGCAGTTA+TGG	0.399672	4_3:+49208238	Msa0644850:CDS
AAGCACTCTATGTGATTTCT+GGG	0.401006	4_3:+49207176	Msa0644850:CDS
GATTGGAATGGAATTTGAAA+TGG	0.405414	4_3:-49209625	None:intergenic
GACTTATACTGAAGTCATAA+GGG	0.411972	4_3:+49208299	Msa0644850:CDS
AGACTTATACTGAAGTCATA+AGG	0.417626	4_3:+49208298	Msa0644850:CDS
CCTCTCCAAAGGGGTCCCCT+TGG	0.420251	4_3:-49207133	None:intergenic
TGCAAATAATTTGATTGGAA+TGG	0.425455	4_3:-49209637	None:intergenic
TGGATCATAAATACTGGAAT+CGG	0.436321	4_3:-49208487	None:intergenic
TGGAGAGGAAAGAAACTCAT+TGG	0.445215	4_3:+49207148	Msa0644850:CDS
ATTCTGAACGGCAACTCCTC+TGG	0.448624	4_3:-49208393	None:intergenic
ATGTGATTTCTGGGTTGAAA+AGG	0.448913	4_3:+49207185	Msa0644850:CDS
GGACGACGTATTGCAGTTAT+GGG	0.449995	4_3:+49208239	Msa0644850:CDS
GAAGACCAAGGGGACCCCTT+TGG	0.465377	4_3:+49207128	Msa0644850:CDS
AATGTCTCTGATGGGGTTGA+TGG	0.468478	4_3:-49207026	None:intergenic
CTGTATAAATAGTTGCTCCT+TGG	0.468784	4_3:+49209165	Msa0644850:intron
TGCATTACTGGGTTCTGAGC+TGG	0.474893	4_3:+49209278	Msa0644850:three_prime_UTR
GAGTTTCTTTCCTCTCCAAA+GGG	0.480120	4_3:-49207143	None:intergenic
GTCCTCACTTGATGATGGTA+AGG	0.482454	4_3:+49209346	Msa0644850:three_prime_UTR
CAATTTGTACATTACAGATA+AGG	0.482779	4_3:-49209413	None:intergenic
TGAGTTTCTTTCCTCTCCAA+AGG	0.488733	4_3:-49207144	None:intergenic
TAAGGACTTAATTATTGCGT+TGG	0.496436	4_3:+49208200	Msa0644850:CDS
CTTAATTATTGCGTTGGCAA+GGG	0.496698	4_3:+49208206	Msa0644850:CDS
TTGTTTCTCAAAAGAGGATG+TGG	0.498411	4_3:-49208435	None:intergenic
GGATCATAAATACTGGAATC+GGG	0.505211	4_3:-49208486	None:intergenic
AGAAGTTTCTCTCGCTCTCA+AGG	0.505605	4_3:+49207312	Msa0644850:CDS
ACTTAATTATTGCGTTGGCA+AGG	0.512870	4_3:+49208205	Msa0644850:CDS
TATACGTTCATCGCATCTGC+AGG	0.520946	4_3:-49208342	None:intergenic
GATATTACCTTGCATAATGA+AGG	0.522099	4_3:+49209491	Msa0644850:three_prime_UTR
CAATAATTAAGTCCTTATAC+AGG	0.537804	4_3:-49208194	None:intergenic
TTTGTACATTACAGATAAGG+TGG	0.543958	4_3:-49209410	None:intergenic
GTTGGCAAGGGCCAAAAGAA+TGG	0.545985	4_3:+49208218	Msa0644850:CDS
TTCAACACCTTCATTATGCA+AGG	0.550567	4_3:-49209498	None:intergenic
AGGTGATGCAAAAGCAGGAC+TGG	0.555001	4_3:+49208154	Msa0644850:CDS
ATTGAGTCCTCACTTGATGA+TGG	0.557112	4_3:+49209341	Msa0644850:three_prime_UTR
GAATGCTGAGGTTAAACGAT+GGG	0.557233	4_3:-49206972	None:intergenic
GTTTCAGGTGATGCAAAAGC+AGG	0.562129	4_3:+49208149	Msa0644850:CDS
TGGTGCATTATGGAAGAAGC+AGG	0.563400	4_3:+49209193	Msa0644850:three_prime_UTR
GCGCCAAATATCTCCTGTGG+TGG	0.566876	4_3:-49208507	None:intergenic
ATAAGGGGCTTCTTGAGTAG+TGG	0.570488	4_3:+49208315	Msa0644850:CDS
TGCAGATGAAATGTCTCTGA+TGG	0.572681	4_3:-49207035	None:intergenic
CAATGTGGAAGTAGTAGTTG+TGG	0.574999	4_3:+49209226	Msa0644850:three_prime_UTR
CACAACTACTACTTCCACAT+TGG	0.576605	4_3:-49209225	None:intergenic
ATAGTTGCTCCTTGGAGACA+TGG	0.579375	4_3:+49209173	Msa0644850:intron
GAGATATTTGGCGCACGCTG+AGG	0.580393	4_3:+49208516	Msa0644850:CDS
CATAATGCACCATGTCTCCA+AGG	0.589336	4_3:-49209182	None:intergenic
AGATGCGATGAACGTATATG+AGG	0.589996	4_3:+49208347	Msa0644850:CDS
ATACCACGACGGAAGACCAA+GGG	0.592596	4_3:+49207117	Msa0644850:CDS
CTGAACGGCAACTCCTCTGG+TGG	0.593620	4_3:-49208390	None:intergenic
CAGTATAAGTCTGAGAATCA+GGG	0.596975	4_3:-49208287	None:intergenic
CAGTATTTATGATCCACCAC+AGG	0.600228	4_3:+49208494	Msa0644850:CDS
GTCCCCTTGGTCTTCCGTCG+TGG	0.601108	4_3:-49207120	None:intergenic
GCAGATGAAATGTCTCTGAT+GGG	0.604663	4_3:-49207034	None:intergenic
TGCAGTTATGGGAAAGCATG+AGG	0.623110	4_3:+49208250	Msa0644850:CDS
AATACCACGACGGAAGACCA+AGG	0.623296	4_3:+49207116	Msa0644850:CDS
GTTATGGGAAAGCATGAGGA+AGG	0.623759	4_3:+49208254	Msa0644850:CDS
CCTTTCAACAAAATTCTGAA+CGG	0.625731	4_3:-49208405	None:intergenic
CCAAGGGGACCCCTTTGGAG+AGG	0.633396	4_3:+49207133	Msa0644850:CDS
CGTGCGCCAAATATCTCCTG+TGG	0.633660	4_3:-49208510	None:intergenic
ACTTATACTGAAGTCATAAG+GGG	0.636269	4_3:+49208300	Msa0644850:CDS
AATTTGATGTGAATTGTGTG+AGG	0.645060	4_3:-49206994	None:intergenic
AACCTTACCATCATCAAGTG+AGG	0.648062	4_3:-49209348	None:intergenic
AGTTTCTTTCCTCTCCAAAG+GGG	0.658349	4_3:-49207142	None:intergenic
GCAGGATTGTGCAACCAATG+TGG	0.664935	4_3:+49209211	Msa0644850:three_prime_UTR
TACCACGACGGAAGACCAAG+GGG	0.679455	4_3:+49207118	Msa0644850:CDS
CAGATGAAATGTCTCTGATG+GGG	0.721300	4_3:-49207033	None:intergenic
GGAATGCTGAGGTTAAACGA+TGG	0.721495	4_3:-49206973	None:intergenic
GAATTCTCCAGATCCACCAG+AGG	0.731482	4_3:+49208377	Msa0644850:CDS
GAATTGTGTGAGGAATGCTG+AGG	0.838783	4_3:-49206984	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTATTTTCATTTAGTTTA+AGG	+	chr4_3:49207940-49207959	Msa0644850:intron	10.0%
!!	AAAAAAAAAAACTACAATCA+GGG	-	chr4_3:49207645-49207664	None:intergenic	15.0%
!!	AAAAAAAAAAAACTACAATC+AGG	-	chr4_3:49207646-49207665	None:intergenic	15.0%
!!	AGATTAATTCATATAGTTTA+GGG	-	chr4_3:49207813-49207832	None:intergenic	15.0%
!!	AAGATTAATTCATATAGTTT+AGG	-	chr4_3:49207814-49207833	None:intergenic	15.0%
!!	AAAAATAAAACTTTGAACAT+GGG	-	chr4_3:49208577-49208596	None:intergenic	15.0%
!!	TAAAAATAAAACTTTGAACA+TGG	-	chr4_3:49208578-49208597	None:intergenic	15.0%
!!!	ATTTAGTTTAAGGACTAAAT+GGG	+	chr4_3:49207950-49207969	Msa0644850:intron	20.0%
!!	AGTGGTGATTATTATAATTA+TGG	+	chr4_3:49208083-49208102	Msa0644850:intron	20.0%
!!	TATAATTATGGTTGTAATGT+TGG	+	chr4_3:49208095-49208114	Msa0644850:intron	20.0%
!!	TATTGATGAACTTAATTTAG+AGG	+	chr4_3:49208643-49208662	Msa0644850:intron	20.0%
!!	TATTCACAAATTTACAATTC+TGG	-	chr4_3:49208674-49208693	None:intergenic	20.0%
!!	TCATCAAAACTCATGTTTTA+AGG	+	chr4_3:49207239-49207258	Msa0644850:CDS	25.0%
!!!	TGTTTTAAGGTTATTGAAGA+TGG	+	chr4_3:49207252-49207271	Msa0644850:CDS	25.0%
!	CAACAAACATTAAAACAGAA+GGG	-	chr4_3:49207371-49207390	None:intergenic	25.0%
!	CAACATAACAATAATCAAAC+TGG	-	chr4_3:49207428-49207447	None:intergenic	25.0%
!	CAGTTTGATTATTGTTATGT+TGG	+	chr4_3:49207426-49207445	Msa0644850:intron	25.0%
!	CTCAATTTAAAAAACTGAGT+GGG	-	chr4_3:49207491-49207510	None:intergenic	25.0%
!!!	GAAGAGATTGATATTTTTGA+GGG	-	chr4_3:49207695-49207714	None:intergenic	25.0%
!!!	AGAAGAGATTGATATTTTTG+AGG	-	chr4_3:49207696-49207715	None:intergenic	25.0%
!	TTCGCTAAGATATATGAAAA+TGG	+	chr4_3:49207721-49207740	Msa0644850:intron	25.0%
!	TAGTTTATAGATCAACTTGA+TGG	+	chr4_3:49207893-49207912	Msa0644850:intron	25.0%
!	AGTTTATAGATCAACTTGAT+GGG	+	chr4_3:49207894-49207913	Msa0644850:intron	25.0%
!!	CATTTAGTTTAAGGACTAAA+TGG	+	chr4_3:49207949-49207968	Msa0644850:intron	25.0%
!	CAATAATTAAGTCCTTATAC+AGG	-	chr4_3:49208197-49208216	None:intergenic	25.0%
!	TTAAGTTAGTAGATTTAAGC+TGG	+	chr4_3:49208746-49208765	Msa0644850:intron	25.0%
!!	TATTTTACAATGACAGAAAC+GGG	-	chr4_3:49208833-49208852	None:intergenic	25.0%
!!	CTATTTTACAATGACAGAAA+CGG	-	chr4_3:49208834-49208853	None:intergenic	25.0%
!	TAAAAACAAAAGCAGGAAAA+TGG	-	chr4_3:49208938-49208957	None:intergenic	25.0%
!	ACAAATCTAAAAACAAAAGC+AGG	-	chr4_3:49208945-49208964	None:intergenic	25.0%
!	AAAACTACTTTCATCCTTAA+AGG	-	chr4_3:49208980-49208999	None:intergenic	25.0%
!!	TTTAAGGATGAAAGTAGTTT+TGG	+	chr4_3:49208979-49208998	Msa0644850:intron	25.0%
!!!	AGTAGTTTTGGTAAAGTAAA+AGG	+	chr4_3:49208991-49209010	Msa0644850:intron	25.0%
!	CAATTTGTACATTACAGATA+AGG	-	chr4_3:49209416-49209435	None:intergenic	25.0%
!!	AGCTTGTATATTTTATCTAC+AGG	+	chr4_3:49209530-49209549	Msa0644850:three_prime_UTR	25.0%
!!	GCTTGTATATTTTATCTACA+GGG	+	chr4_3:49209531-49209550	Msa0644850:three_prime_UTR	25.0%
!	TGCAAATAATTTGATTGGAA+TGG	-	chr4_3:49209640-49209659	None:intergenic	25.0%
	TTCACTGTATCCTTAGAAAA+TGG	+	chr4_3:49206945-49206964	Msa0644850:CDS	30.0%
	AATTTGATGTGAATTGTGTG+AGG	-	chr4_3:49206997-49207016	None:intergenic	30.0%
!!	ACATGAGTTTTGATGAACTT+AGG	-	chr4_3:49207235-49207254	None:intergenic	30.0%
	GCAACAAACATTAAAACAGA+AGG	-	chr4_3:49207372-49207391	None:intergenic	30.0%
	TCAGAATCATTACAACAAAC+AGG	-	chr4_3:49207401-49207420	None:intergenic	30.0%
	CCTCAATTTAAAAAACTGAG+TGG	-	chr4_3:49207492-49207511	None:intergenic	30.0%
!!!	CCACTCAGTTTTTTAAATTG+AGG	+	chr4_3:49207489-49207508	Msa0644850:intron	30.0%
	CTACAATCAGGGTTTAAAAA+AGG	-	chr4_3:49207634-49207653	None:intergenic	30.0%
	CTTCTCAATATAGAACAGAA+GGG	-	chr4_3:49207841-49207860	None:intergenic	30.0%
	TCTTCTCAATATAGAACAGA+AGG	-	chr4_3:49207842-49207861	None:intergenic	30.0%
	TTCTGTTCTATATTGAGAAG+AGG	+	chr4_3:49207841-49207860	Msa0644850:intron	30.0%
	AATGGGTGAAAGAGTTATTT+AGG	+	chr4_3:49207967-49207986	Msa0644850:intron	30.0%
	ATGGGTGAAAGAGTTATTTA+GGG	+	chr4_3:49207968-49207987	Msa0644850:intron	30.0%
	CGATAATTTCCAGAAAAAAG+GGG	-	chr4_3:49208037-49208056	None:intergenic	30.0%
	CCGATAATTTCCAGAAAAAA+GGG	-	chr4_3:49208038-49208057	None:intergenic	30.0%
!!!	CCCTTTTTTCTGGAAATTAT+CGG	+	chr4_3:49208035-49208054	Msa0644850:intron	30.0%
	ACCGATAATTTCCAGAAAAA+AGG	-	chr4_3:49208039-49208058	None:intergenic	30.0%
!	GGAAATTATCGGTTGATATT+AGG	+	chr4_3:49208046-49208065	Msa0644850:intron	30.0%
!!!	TAGGTTTTGACTTTTACTAG+TGG	+	chr4_3:49208065-49208084	Msa0644850:intron	30.0%
	ATCCATTTAAGTCACTCATA+AGG	-	chr4_3:49208121-49208140	None:intergenic	30.0%
	TCCTTATACAGGAATATATC+AGG	-	chr4_3:49208186-49208205	None:intergenic	30.0%
	TAAGGACTTAATTATTGCGT+TGG	+	chr4_3:49208200-49208219	Msa0644850:CDS	30.0%
	AGACTTATACTGAAGTCATA+AGG	+	chr4_3:49208298-49208317	Msa0644850:CDS	30.0%
	GACTTATACTGAAGTCATAA+GGG	+	chr4_3:49208299-49208318	Msa0644850:CDS	30.0%
	ACTTATACTGAAGTCATAAG+GGG	+	chr4_3:49208300-49208319	Msa0644850:CDS	30.0%
	CCTTTCAACAAAATTCTGAA+CGG	-	chr4_3:49208408-49208427	None:intergenic	30.0%
!	CGTTCAGAATTTTGTTGAAA+GGG	+	chr4_3:49208406-49208425	Msa0644850:CDS	30.0%
!	TTCACTTTGTTTCTCAAAAG+AGG	-	chr4_3:49208444-49208463	None:intergenic	30.0%
	TGGATCATAAATACTGGAAT+CGG	-	chr4_3:49208490-49208509	None:intergenic	30.0%
	TTAGTAGATTTAAGCTGGTA+TGG	+	chr4_3:49208751-49208770	Msa0644850:intron	30.0%
	TAGTTCCTAGAAATTTGACT+TGG	-	chr4_3:49209116-49209135	None:intergenic	30.0%
	AGCAACTATTTATACAGAAG+AGG	-	chr4_3:49209162-49209181	None:intergenic	30.0%
	TTTGTACATTACAGATAAGG+TGG	-	chr4_3:49209413-49209432	None:intergenic	30.0%
	TATCCATCATAAAAACTGCT+GGG	-	chr4_3:49209475-49209494	None:intergenic	30.0%
	ATATCCATCATAAAAACTGC+TGG	-	chr4_3:49209476-49209495	None:intergenic	30.0%
	GATATTACCTTGCATAATGA+AGG	+	chr4_3:49209491-49209510	Msa0644850:three_prime_UTR	30.0%
	GATCTCTAACAAGATCAATT+TGG	-	chr4_3:49209562-49209581	None:intergenic	30.0%
	GATTGGAATGGAATTTGAAA+TGG	-	chr4_3:49209628-49209647	None:intergenic	30.0%
	ACAGCTGCAAATAATTTGAT+TGG	-	chr4_3:49209645-49209664	None:intergenic	30.0%
!!	GATGGGTTTTCCATTTTCTA+AGG	-	chr4_3:49206958-49206977	None:intergenic	35.0%
	TTTGAACACAAAAACGTGAC+TGG	+	chr4_3:49207085-49207104	Msa0644850:CDS	35.0%
	AAGCACTCTATGTGATTTCT+GGG	+	chr4_3:49207176-49207195	Msa0644850:CDS	35.0%
!	ATGTGATTTCTGGGTTGAAA+AGG	+	chr4_3:49207185-49207204	Msa0644850:CDS	35.0%
	CATTACAACAAACAGGTTAC+AGG	-	chr4_3:49207394-49207413	None:intergenic	35.0%
	GACATCAAAAACCTTGATGT+CGG	+	chr4_3:49207586-49207605	Msa0644850:intron	35.0%
!!	TTTTGAGGGACTAAAATTGC+TGG	-	chr4_3:49207681-49207700	None:intergenic	35.0%
	TAGTTTCCAGACTAACTTGA+CGG	-	chr4_3:49207769-49207788	None:intergenic	35.0%
!	GGTTCTACTGATTAAAGATG+CGG	+	chr4_3:49207862-49207881	Msa0644850:intron	35.0%
	TGGGTGAAAGAGTTATTTAG+GGG	+	chr4_3:49207969-49207988	Msa0644850:intron	35.0%
!	AGTGACTTAAATGGATTTGC+AGG	+	chr4_3:49208125-49208144	Msa0644850:intron	35.0%
	GCCTGATATATTCCTGTATA+AGG	+	chr4_3:49208182-49208201	Msa0644850:CDS	35.0%
!	ACTTAATTATTGCGTTGGCA+AGG	+	chr4_3:49208205-49208224	Msa0644850:CDS	35.0%
!	CTTAATTATTGCGTTGGCAA+GGG	+	chr4_3:49208206-49208225	Msa0644850:CDS	35.0%
	CAGTATAAGTCTGAGAATCA+GGG	-	chr4_3:49208290-49208309	None:intergenic	35.0%
	TCAGTATAAGTCTGAGAATC+AGG	-	chr4_3:49208291-49208310	None:intergenic	35.0%
!	CCGTTCAGAATTTTGTTGAA+AGG	+	chr4_3:49208405-49208424	Msa0644850:CDS	35.0%
!	TTGTTTCTCAAAAGAGGATG+TGG	-	chr4_3:49208438-49208457	None:intergenic	35.0%
	GGATCATAAATACTGGAATC+GGG	-	chr4_3:49208489-49208508	None:intergenic	35.0%
!!	GTTGTTTTCACTTTTCCCTT+TGG	+	chr4_3:49208607-49208626	Msa0644850:intron	35.0%
	TATTGTACCTTGTCTCCAAA+GGG	-	chr4_3:49208625-49208644	None:intergenic	35.0%
	ATATTGTACCTTGTCTCCAA+AGG	-	chr4_3:49208626-49208645	None:intergenic	35.0%
	ACATATAAGAGGATGACAAG+TGG	-	chr4_3:49208886-49208905	None:intergenic	35.0%
	TCATCCTCTTATATGTTACG+TGG	+	chr4_3:49208890-49208909	Msa0644850:intron	35.0%
	ATGACCACGTAACATATAAG+AGG	-	chr4_3:49208897-49208916	None:intergenic	35.0%
	TATATGTTACGTGGTCATGT+TGG	+	chr4_3:49208899-49208918	Msa0644850:intron	35.0%
!!!	TAGAGCAGCTATTTTTCACA+TGG	-	chr4_3:49209045-49209064	None:intergenic	35.0%
!!	ATTTGACTTGGCGAGTTATT+AGG	-	chr4_3:49209104-49209123	None:intergenic	35.0%
	CTGTATAAATAGTTGCTCCT+TGG	+	chr4_3:49209165-49209184	Msa0644850:intron	35.0%
!!!	TCAAGTTTTGAGTGCATTAC+TGG	+	chr4_3:49209266-49209285	Msa0644850:three_prime_UTR	35.0%
!!!	CAAGTTTTGAGTGCATTACT+GGG	+	chr4_3:49209267-49209286	Msa0644850:three_prime_UTR	35.0%
	TTCAACACCTTCATTATGCA+AGG	-	chr4_3:49209501-49209520	None:intergenic	35.0%
	GAATGCTGAGGTTAAACGAT+GGG	-	chr4_3:49206975-49206994	None:intergenic	40.0%
	CAGATGAAATGTCTCTGATG+GGG	-	chr4_3:49207036-49207055	None:intergenic	40.0%
	GCAGATGAAATGTCTCTGAT+GGG	-	chr4_3:49207037-49207056	None:intergenic	40.0%
	TGCAGATGAAATGTCTCTGA+TGG	-	chr4_3:49207038-49207057	None:intergenic	40.0%
!!!	GGTTTTAGAGAATACCACGA+CGG	+	chr4_3:49207106-49207125	Msa0644850:CDS	40.0%
	AGTTTCTTTCCTCTCCAAAG+GGG	-	chr4_3:49207145-49207164	None:intergenic	40.0%
	GAGTTTCTTTCCTCTCCAAA+GGG	-	chr4_3:49207146-49207165	None:intergenic	40.0%
	TGAGTTTCTTTCCTCTCCAA+AGG	-	chr4_3:49207147-49207166	None:intergenic	40.0%
	TGGAGAGGAAAGAAACTCAT+TGG	+	chr4_3:49207148-49207167	Msa0644850:CDS	40.0%
!	GAAGCACTCTATGTGATTTC+TGG	+	chr4_3:49207175-49207194	Msa0644850:CDS	40.0%
	GGTACGAGGATACAAAAAGA+GGG	-	chr4_3:49207350-49207369	None:intergenic	40.0%
!	CATTAAAACAGAAGGGTACG+AGG	-	chr4_3:49207364-49207383	None:intergenic	40.0%
	CACGACTCTACGTAATATCA+AGG	-	chr4_3:49207527-49207546	None:intergenic	40.0%
	CTTGATATTACGTAGAGTCG+TGG	+	chr4_3:49207525-49207544	Msa0644850:intron	40.0%
	GGGTGAAAGAGTTATTTAGG+GGG	+	chr4_3:49207970-49207989	Msa0644850:intron	40.0%
	GGTGAAAGAGTTATTTAGGG+GGG	+	chr4_3:49207971-49207990	Msa0644850:intron	40.0%
	TTTAGGGGGGACTAAATTGA+TGG	+	chr4_3:49207984-49208003	Msa0644850:intron	40.0%
!!!	TCAGACTATCCCCTTTTTTC+TGG	+	chr4_3:49208025-49208044	Msa0644850:intron	40.0%
!	GGCCTTATGAGTGACTTAAA+TGG	+	chr4_3:49208116-49208135	Msa0644850:intron	40.0%
!	AATGGATTTGCAGGTGTTTC+AGG	+	chr4_3:49208134-49208153	Msa0644850:intron	40.0%
!	CAATACGTCGTCCATTCTTT+TGG	-	chr4_3:49208232-49208251	None:intergenic	40.0%
	AGATGCGATGAACGTATATG+AGG	+	chr4_3:49208347-49208366	Msa0644850:CDS	40.0%
!!	CTGTGGTGGATCATAAATAC+TGG	-	chr4_3:49208496-49208515	None:intergenic	40.0%
	CAGTATTTATGATCCACCAC+AGG	+	chr4_3:49208494-49208513	Msa0644850:CDS	40.0%
	TGTGAGTTGTGACTTATGAG+TGG	+	chr4_3:49208707-49208726	Msa0644850:intron	40.0%
!	GTTAGCAAGTACTGCCTTTA+AGG	+	chr4_3:49208963-49208982	Msa0644850:intron	40.0%
	ACTCGCCAAGTCAAATTTCT+AGG	+	chr4_3:49209108-49209127	Msa0644850:intron	40.0%
	CACAACTACTACTTCCACAT+TGG	-	chr4_3:49209228-49209247	None:intergenic	40.0%
	CAATGTGGAAGTAGTAGTTG+TGG	+	chr4_3:49209226-49209245	Msa0644850:three_prime_UTR	40.0%
	ATTGAGTCCTCACTTGATGA+TGG	+	chr4_3:49209341-49209360	Msa0644850:three_prime_UTR	40.0%
	AACCTTACCATCATCAAGTG+AGG	-	chr4_3:49209351-49209370	None:intergenic	40.0%
!	TTGCCCAGCAGTTTTTATGA+TGG	+	chr4_3:49209469-49209488	Msa0644850:three_prime_UTR	40.0%
	GGAATGCTGAGGTTAAACGA+TGG	-	chr4_3:49206976-49206995	None:intergenic	45.0%
	GAATTGTGTGAGGAATGCTG+AGG	-	chr4_3:49206987-49207006	None:intergenic	45.0%
	AATGTCTCTGATGGGGTTGA+TGG	-	chr4_3:49207029-49207048	None:intergenic	45.0%
	AGAAGTTTCTCTCGCTCTCA+AGG	+	chr4_3:49207312-49207331	Msa0644850:CDS	45.0%
	GGGTACGAGGATACAAAAAG+AGG	-	chr4_3:49207351-49207370	None:intergenic	45.0%
	AAGGTTCACAGTAGCGATCT+GGG	-	chr4_3:49207615-49207634	None:intergenic	45.0%
	AAAGGTTCACAGTAGCGATC+TGG	-	chr4_3:49207616-49207635	None:intergenic	45.0%
	TGAAAGCCGTCAAGTTAGTC+TGG	+	chr4_3:49207760-49207779	Msa0644850:intron	45.0%
!	GTTTCAGGTGATGCAAAAGC+AGG	+	chr4_3:49208149-49208168	Msa0644850:CDS	45.0%
	TGGACGACGTATTGCAGTTA+TGG	+	chr4_3:49208238-49208257	Msa0644850:CDS	45.0%
	GGACGACGTATTGCAGTTAT+GGG	+	chr4_3:49208239-49208258	Msa0644850:CDS	45.0%
!	TGCAGTTATGGGAAAGCATG+AGG	+	chr4_3:49208250-49208269	Msa0644850:CDS	45.0%
!	GTTATGGGAAAGCATGAGGA+AGG	+	chr4_3:49208254-49208273	Msa0644850:CDS	45.0%
	ATAAGGGGCTTCTTGAGTAG+TGG	+	chr4_3:49208315-49208334	Msa0644850:CDS	45.0%
	TATACGTTCATCGCATCTGC+AGG	-	chr4_3:49208345-49208364	None:intergenic	45.0%
	GATCCACCACAGGAGATATT+TGG	+	chr4_3:49208504-49208523	Msa0644850:CDS	45.0%
	GAGAGAGAGGAAGAGAGTAA+GGG	-	chr4_3:49208548-49208567	None:intergenic	45.0%
	AGAGAGAGAGGAAGAGAGTA+AGG	-	chr4_3:49208549-49208568	None:intergenic	45.0%
!!	CACTTTTCCCTTTGGAGACA+AGG	+	chr4_3:49208615-49208634	Msa0644850:intron	45.0%
	TTACGTGGTCATGTTGGACT+CGG	+	chr4_3:49208905-49208924	Msa0644850:intron	45.0%
	ATAGTTGCTCCTTGGAGACA+TGG	+	chr4_3:49209173-49209192	Msa0644850:intron	45.0%
	CATAATGCACCATGTCTCCA+AGG	-	chr4_3:49209185-49209204	None:intergenic	45.0%
	CTTGGAGACATGGTGCATTA+TGG	+	chr4_3:49209183-49209202	Msa0644850:three_prime_UTR	45.0%
	TGGTGCATTATGGAAGAAGC+AGG	+	chr4_3:49209193-49209212	Msa0644850:three_prime_UTR	45.0%
!!	AGCTGGCTAGTTTGTAGATC+AGG	+	chr4_3:49209295-49209314	Msa0644850:three_prime_UTR	45.0%
!!	GTCCTCACTTGATGATGGTA+AGG	+	chr4_3:49209346-49209365	Msa0644850:three_prime_UTR	45.0%
	AATACCACGACGGAAGACCA+AGG	+	chr4_3:49207116-49207135	Msa0644850:CDS	50.0%
	ATACCACGACGGAAGACCAA+GGG	+	chr4_3:49207117-49207136	Msa0644850:CDS	50.0%
	ATGTCCTGCATACGCGATTG+AGG	-	chr4_3:49207571-49207590	None:intergenic	50.0%
	AGGTGATGCAAAAGCAGGAC+TGG	+	chr4_3:49208154-49208173	Msa0644850:CDS	50.0%
	GTTGGCAAGGGCCAAAAGAA+TGG	+	chr4_3:49208218-49208237	Msa0644850:CDS	50.0%
	GAATTCTCCAGATCCACCAG+AGG	+	chr4_3:49208377-49208396	Msa0644850:CDS	50.0%
	ATTCTGAACGGCAACTCCTC+TGG	-	chr4_3:49208396-49208415	None:intergenic	50.0%
	TACGTGGTCATGTTGGACTC+GGG	+	chr4_3:49208906-49208925	Msa0644850:intron	50.0%
	GACTTGGCGAGTTATTAGGC+AGG	-	chr4_3:49209100-49209119	None:intergenic	50.0%
	GCAGGATTGTGCAACCAATG+TGG	+	chr4_3:49209211-49209230	Msa0644850:three_prime_UTR	50.0%
!!	TGCATTACTGGGTTCTGAGC+TGG	+	chr4_3:49209278-49209297	Msa0644850:three_prime_UTR	50.0%
	TACCACGACGGAAGACCAAG+GGG	+	chr4_3:49207118-49207137	Msa0644850:CDS	55.0%
	ACAGCCTCAATCGCGTATGC+AGG	+	chr4_3:49207564-49207583	Msa0644850:intron	55.0%
	GCGCCAAATATCTCCTGTGG+TGG	-	chr4_3:49208510-49208529	None:intergenic	55.0%
	CGTGCGCCAAATATCTCCTG+TGG	-	chr4_3:49208513-49208532	None:intergenic	55.0%
	GAGATATTTGGCGCACGCTG+AGG	+	chr4_3:49208516-49208535	Msa0644850:CDS	55.0%
	ACATGGGACAGCAGAGAGAG+AGG	-	chr4_3:49208561-49208580	None:intergenic	55.0%
	GAAGACCAAGGGGACCCCTT+TGG	+	chr4_3:49207128-49207147	Msa0644850:CDS	60.0%
	GATCTGGGCTGCCGACATCA+AGG	-	chr4_3:49207600-49207619	None:intergenic	60.0%
!	GGCAACTCCTCTGGTGGATC+TGG	-	chr4_3:49208387-49208406	None:intergenic	60.0%
	CTGAACGGCAACTCCTCTGG+TGG	-	chr4_3:49208393-49208412	None:intergenic	60.0%
!	GTCCCCTTGGTCTTCCGTCG+TGG	-	chr4_3:49207123-49207142	None:intergenic	65.0%
	CCTCTCCAAAGGGGTCCCCT+TGG	-	chr4_3:49207136-49207155	None:intergenic	65.0%
!	CCAAGGGGACCCCTTTGGAG+AGG	+	chr4_3:49207133-49207152	Msa0644850:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	49206938	49209676	49206938	ID=Msa0644850;Name=Msa0644850
chr4_3	mRNA	49206938	49209676	49206938	ID=Msa0644850-mRNA-1;Parent=Msa0644850;Name=Msa0644850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.66\|1\|0.5\|0.33\|3\|501\|261
chr4_3	exon	49206938	49207333	49206938	ID=Msa0644850-mRNA-1:exon:11700;Parent=Msa0644850-mRNA-1
chr4_3	exon	49208147	49208537	49208147	ID=Msa0644850-mRNA-1:exon:11701;Parent=Msa0644850-mRNA-1
chr4_3	exon	49209177	49209676	49209177	ID=Msa0644850-mRNA-1:exon:11702;Parent=Msa0644850-mRNA-1
chr4_3	CDS	49206938	49207333	49206938	ID=Msa0644850-mRNA-1:cds;Parent=Msa0644850-mRNA-1
chr4_3	CDS	49208147	49208536	49208147	ID=Msa0644850-mRNA-1:cds;Parent=Msa0644850-mRNA-1
chr4_3	three_prime_UTR	49208537	49208537	49208537	ID=Msa0644850-mRNA-1:three_prime_utr;Parent=Msa0644850-mRNA-1
chr4_3	three_prime_UTR	49209177	49209676	49209177	ID=Msa0644850-mRNA-1:three_prime_utr;Parent=Msa0644850-mRNA-1

Gene Sequence

>Msa0644850

ATGGCACTTCACTGTATCCTTAGAAAATGGAAAACCCATCGTTTAACCTCAGCATTCCTCACACAATTCACATCAAATTCAACAAACACCATCAACCCCATCAGAGACATTTCATCTGCATTATCTTTAACACACTTTATTACATCATTTGAACACAAAAACGTGACTGGTTTTAGAGAATACCACGACGGAAGACCAAGGGGACCCCTTTGGAGAGGAAAGAAACTCATTGGTAAAGAAGCACTCTATGTGATTTCTGGGTTGAAAAGGTTTAAAGATGACGAAGAAAAGCTTCCTAAGTTCATCAAAACTCATGTTTTAAGGTTATTGAAGATGGATTTGATCGCTGTTCTCACTGAACTTGAGCGTCAACAAGAAGTTTCTCTCGCTCTCAAGGTGTTTCAGGTGATGCAAAAGCAGGACTGGTACAAGCCTGATATATTCCTGTATAAGGACTTAATTATTGCGTTGGCAAGGGCCAAAAGAATGGACGACGTATTGCAGTTATGGGAAAGCATGAGGAAGGAGAATCTCTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAGTAGTGGATCTCCTGCAGATGCGATGAACGTATATGAGGACATGAAGAATTCTCCAGATCCACCAGAGGAGTTGCCGTTCAGAATTTTGTTGAAAGGGCTCTTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAAGAGATCTTTCCCGATTCCAGTATTTATGATCCACCACAGGAGATATTTGGCGCACGCTGA

Protein sequence

>Msa0644850

MALHCILRKWKTHRLTSAFLTQFTSNSTNTINPIRDISSALSLTHFITSFEHKNVTGFREYHDGRPRGPLWRGKKLIGKEALYVISGLKRFKDDEEKLPKFIKTHVLRLLKMDLIAVLTELERQQEVSLALKVFQVMQKQDWYKPDIFLYKDLIIALARAKRMDDVLQLWESMRKENLFPDSQTYTEVIRGFLSSGSPADAMNVYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR*