AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598860 MtrunA17_Chr4g0022511 97.403 154 4 0 1 154 1 154 3.68e-111 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598860 AT1G03650.1 68.421 152 45 1 6 154 6 157 8.93e-74 218

Find 37 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAACGGTGACAATATTT+AGG 0.161108 4_2:-36595092 None:intergenic
CAGGTTATGTCATGTATTCT+TGG 0.193464 4_2:+36595336 Msa0598860:CDS
CACGTTGATGCCCAACTTGC+AGG 0.261704 4_2:+36595317 Msa0598860:CDS
AGTGGAAGAGATAGTGAAAT+TGG 0.277192 4_2:+36595208 Msa0598860:CDS
TTAAACAAACACAATATTAC+AGG 0.325566 4_2:-36596662 None:intergenic
GAAGCGAGTGATTCGTGTTT+GGG 0.367842 4_2:-36595245 None:intergenic
GGAAGCGAGTGATTCGTGTT+TGG 0.373847 4_2:-36595246 None:intergenic
TGCAACGGTGACAATATTTA+GGG 0.394824 4_2:-36595091 None:intergenic
TGGCTTTCATGTTGACTGTT+TGG 0.425497 4_2:+36596474 Msa0598860:CDS
CATGACATAACCTGCAAGTT+GGG 0.434152 4_2:-36595327 None:intergenic
TTGATTCTGTTTCTCTGCAA+CGG 0.467497 4_2:-36595106 None:intergenic
TGGACTTCGATTCAAATTGA+AGG 0.474763 4_2:+36596542 Msa0598860:CDS
CATGTTGACTGTTTGGTCGT+AGG 0.477074 4_2:+36596481 Msa0598860:CDS
TATTTGATGGACTAAATTGA+CGG 0.491712 4_2:-36595046 None:intergenic
AAATGCTTATAGAATGTACT+TGG 0.517363 4_2:+36596522 Msa0598860:CDS
CAATGGAGGAGGCAAGGACA+TGG 0.517780 4_2:+36596340 Msa0598860:CDS
CGCACGAGTGATGGCAAATG+TGG 0.525694 4_2:+36595151 Msa0598860:exon
ACATGACATAACCTGCAAGT+TGG 0.533996 4_2:-36595328 None:intergenic
GGAGTTGGAACCTGCGAGCT+TGG 0.538376 4_2:-36595384 None:intergenic
GCAGAACAAGAAAAGTTTCG+CGG 0.541873 4_2:+36596395 Msa0598860:CDS
GCTTCTATCACCAAGCTCGC+AGG 0.549548 4_2:+36595374 Msa0598860:CDS
GCTTACTCACGCACGAGTGA+TGG 0.555036 4_2:+36595142 Msa0598860:exon
AAGGAGCAATGGAGGAGGCA+AGG 0.558770 4_2:+36596334 Msa0598860:CDS
TGCTTCACGTCGATCCGTTG+AGG 0.562820 4_2:+36596422 Msa0598860:CDS
ATAGAAGCATACAATGAAGA+AGG 0.562971 4_2:-36595359 None:intergenic
CTTCTGTAGTGAAGGAGCAA+TGG 0.596774 4_2:+36596323 Msa0598860:intron
CTGAATCTGTACAAGAAGCA+TGG 0.599242 4_2:+36596454 Msa0598860:CDS
CTGTAGTGAAGGAGCAATGG+AGG 0.602271 4_2:+36596326 Msa0598860:intron
TAGTGAAGGAGCAATGGAGG+AGG 0.603189 4_2:+36596329 Msa0598860:intron
GGAACATTGTGTTTGTAACA+TGG 0.606394 4_2:+36596622 Msa0598860:three_prime_UTR
TTCAGCGCAGGTGTCCTCAA+CGG 0.620997 4_2:-36596436 None:intergenic
TTCTTGTACAGATTCAGCGC+AGG 0.621123 4_2:-36596448 None:intergenic
CAGAAACAGTGGTAAAGCAG+TGG 0.623501 4_2:+36595190 Msa0598860:CDS
GGAACATTGTGTTTGTGACA+TGG 0.627922 4_2:+36596702 Msa0598860:three_prime_UTR
TGGAGAGGTTCTACTGAAAG+CGG 0.629168 4_2:+36596360 Msa0598860:CDS
TTAGAACTTGACAGAAACAG+TGG 0.638839 4_2:+36595179 Msa0598860:CDS
GAGGAGGCAAGGACATGGAG+AGG 0.658915 4_2:+36596345 Msa0598860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACTATCTTTAATATA+AGG + chr4_2:36596184-36596203 Msa0598860:intron 10.0%
!! ATTAACTATCTTTAATATAA+GGG + chr4_2:36596185-36596204 Msa0598860:intron 10.0%
!! AATTAACTATCTTTAATATA+AGG + chr4_2:36596184-36596203 Msa0598860:intron 10.0%
!! ATTAACTATCTTTAATATAA+GGG + chr4_2:36596185-36596204 Msa0598860:intron 10.0%
!!! ATAGATTTTCATATATTTGA+TGG - chr4_2:36595062-36595081 None:intergenic 15.0%
!! AAAGAAATTATCCAATTTAT+AGG + chr4_2:36595777-36595796 Msa0598860:intron 15.0%
!! AAGAAATTATCCAATTTATA+GGG + chr4_2:36595778-36595797 Msa0598860:intron 15.0%
!! ATAAGAAATTGCAAAAAAAT+TGG + chr4_2:36595830-36595849 Msa0598860:intron 15.0%
!!! ATAGATTTTCATATATTTGA+TGG - chr4_2:36595062-36595081 None:intergenic 15.0%
!! AAAGAAATTATCCAATTTAT+AGG + chr4_2:36595777-36595796 Msa0598860:intron 15.0%
!! AAGAAATTATCCAATTTATA+GGG + chr4_2:36595778-36595797 Msa0598860:intron 15.0%
!! ATAAGAAATTGCAAAAAAAT+TGG + chr4_2:36595830-36595849 Msa0598860:intron 15.0%
!! AGAAATTATCCAATTTATAG+GGG + chr4_2:36595779-36595798 Msa0598860:intron 20.0%
!! TTATATTAACCCCTATAAAT+TGG - chr4_2:36595791-36595810 None:intergenic 20.0%
!! TTAAACAAACACAATATTAC+AGG - chr4_2:36596665-36596684 None:intergenic 20.0%
!! AGAAATTATCCAATTTATAG+GGG + chr4_2:36595779-36595798 Msa0598860:intron 20.0%
!! TTATATTAACCCCTATAAAT+TGG - chr4_2:36595791-36595810 None:intergenic 20.0%
!! TTAAACAAACACAATATTAC+AGG - chr4_2:36596665-36596684 None:intergenic 20.0%
!!! TATTTGATGGACTAAATTGA+CGG - chr4_2:36595049-36595068 None:intergenic 25.0%
!!! TTTGAGTTCATTTTCAAAGA+AGG - chr4_2:36595270-36595289 None:intergenic 25.0%
!!! CAATTTTTCAAACAGCTTAT+AGG - chr4_2:36595436-36595455 None:intergenic 25.0%
!! AAAATTGTCTAAGTGTGTTT+TGG + chr4_2:36595449-36595468 Msa0598860:intron 25.0%
!!! CTCAGGTTTTATAATAATTC+TGG - chr4_2:36595689-36595708 None:intergenic 25.0%
! AAAATTTGCAACCCATTTAT+AGG + chr4_2:36595714-36595733 Msa0598860:intron 25.0%
! AAATTTGCAACCCATTTATA+GGG + chr4_2:36595715-36595734 Msa0598860:intron 25.0%
! TTATGTAAACCCCTATAAAT+GGG - chr4_2:36595728-36595747 None:intergenic 25.0%
! AAATTGCAAAAAAATTGGAC+CGG + chr4_2:36595835-36595854 Msa0598860:intron 25.0%
! CTAAACTATTGAAAGATAGT+AGG - chr4_2:36595980-36595999 None:intergenic 25.0%
! ATACAAGCATTTCATTAGTT+GGG - chr4_2:36596242-36596261 None:intergenic 25.0%
! ACAATATGGGTATGTAATAT+GGG + chr4_2:36596289-36596308 Msa0598860:intron 25.0%
! AAATGCTTATAGAATGTACT+TGG + chr4_2:36596522-36596541 Msa0598860:CDS 25.0%
!! CACTTTTATATACGTTATCA+TGG + chr4_2:36596579-36596598 Msa0598860:three_prime_UTR 25.0%
! GTCAATTCAAAAAACAGATT+TGG + chr4_2:36596601-36596620 Msa0598860:three_prime_UTR 25.0%
! TTAAGCACTAAAAACAAATC+TGG + chr4_2:36596681-36596700 Msa0598860:three_prime_UTR 25.0%
!!! TATTTGATGGACTAAATTGA+CGG - chr4_2:36595049-36595068 None:intergenic 25.0%
!!! TTTGAGTTCATTTTCAAAGA+AGG - chr4_2:36595270-36595289 None:intergenic 25.0%
!!! CAATTTTTCAAACAGCTTAT+AGG - chr4_2:36595436-36595455 None:intergenic 25.0%
!! AAAATTGTCTAAGTGTGTTT+TGG + chr4_2:36595449-36595468 Msa0598860:intron 25.0%
!!! CTCAGGTTTTATAATAATTC+TGG - chr4_2:36595689-36595708 None:intergenic 25.0%
! AAAATTTGCAACCCATTTAT+AGG + chr4_2:36595714-36595733 Msa0598860:intron 25.0%
! AAATTTGCAACCCATTTATA+GGG + chr4_2:36595715-36595734 Msa0598860:intron 25.0%
! TTATGTAAACCCCTATAAAT+GGG - chr4_2:36595728-36595747 None:intergenic 25.0%
! AAATTGCAAAAAAATTGGAC+CGG + chr4_2:36595835-36595854 Msa0598860:intron 25.0%
! CTAAACTATTGAAAGATAGT+AGG - chr4_2:36595980-36595999 None:intergenic 25.0%
! ATACAAGCATTTCATTAGTT+GGG - chr4_2:36596242-36596261 None:intergenic 25.0%
! ACAATATGGGTATGTAATAT+GGG + chr4_2:36596289-36596308 Msa0598860:intron 25.0%
! AAATGCTTATAGAATGTACT+TGG + chr4_2:36596522-36596541 Msa0598860:CDS 25.0%
!! CACTTTTATATACGTTATCA+TGG + chr4_2:36596579-36596598 Msa0598860:three_prime_UTR 25.0%
! GTCAATTCAAAAAACAGATT+TGG + chr4_2:36596601-36596620 Msa0598860:three_prime_UTR 25.0%
! TTAAGCACTAAAAACAAATC+TGG + chr4_2:36596681-36596700 Msa0598860:three_prime_UTR 25.0%
! ATAGAAGCATACAATGAAGA+AGG - chr4_2:36595362-36595381 None:intergenic 30.0%
CTTGAAAGCTTAAAAAAGAG+TGG - chr4_2:36595408-36595427 None:intergenic 30.0%
!!! GTTGCAAATTTTTTTTGCTC+AGG - chr4_2:36595706-36595725 None:intergenic 30.0%
AATTTGCAACCCATTTATAG+GGG + chr4_2:36595716-36595735 Msa0598860:intron 30.0%
CTTATGTAAACCCCTATAAA+TGG - chr4_2:36595729-36595748 None:intergenic 30.0%
!! ACTAAGTTGATGTATTAAGG+GGG - chr4_2:36595940-36595959 None:intergenic 30.0%
!! GACTAAGTTGATGTATTAAG+GGG - chr4_2:36595941-36595960 None:intergenic 30.0%
!! CGACTAAGTTGATGTATTAA+GGG - chr4_2:36595942-36595961 None:intergenic 30.0%
!! ACGACTAAGTTGATGTATTA+AGG - chr4_2:36595943-36595962 None:intergenic 30.0%
TAATACATCAACTTAGTCGT+TGG + chr4_2:36595943-36595962 Msa0598860:intron 30.0%
CATACAAGCATTTCATTAGT+TGG - chr4_2:36596243-36596262 None:intergenic 30.0%
! TTTGTTGGTTACTCACAATA+TGG + chr4_2:36596275-36596294 Msa0598860:intron 30.0%
! TTGTTGGTTACTCACAATAT+GGG + chr4_2:36596276-36596295 Msa0598860:intron 30.0%
CACAATATGGGTATGTAATA+TGG + chr4_2:36596288-36596307 Msa0598860:intron 30.0%
! GTATGTAATATGGGATGTTT+TGG + chr4_2:36596298-36596317 Msa0598860:intron 30.0%
! ATAGAAGCATACAATGAAGA+AGG - chr4_2:36595362-36595381 None:intergenic 30.0%
CTTGAAAGCTTAAAAAAGAG+TGG - chr4_2:36595408-36595427 None:intergenic 30.0%
!!! GTTGCAAATTTTTTTTGCTC+AGG - chr4_2:36595706-36595725 None:intergenic 30.0%
AATTTGCAACCCATTTATAG+GGG + chr4_2:36595716-36595735 Msa0598860:intron 30.0%
CTTATGTAAACCCCTATAAA+TGG - chr4_2:36595729-36595748 None:intergenic 30.0%
!! ACTAAGTTGATGTATTAAGG+GGG - chr4_2:36595940-36595959 None:intergenic 30.0%
!! GACTAAGTTGATGTATTAAG+GGG - chr4_2:36595941-36595960 None:intergenic 30.0%
!! CGACTAAGTTGATGTATTAA+GGG - chr4_2:36595942-36595961 None:intergenic 30.0%
!! ACGACTAAGTTGATGTATTA+AGG - chr4_2:36595943-36595962 None:intergenic 30.0%
TAATACATCAACTTAGTCGT+TGG + chr4_2:36595943-36595962 Msa0598860:intron 30.0%
CATACAAGCATTTCATTAGT+TGG - chr4_2:36596243-36596262 None:intergenic 30.0%
! TTTGTTGGTTACTCACAATA+TGG + chr4_2:36596275-36596294 Msa0598860:intron 30.0%
! TTGTTGGTTACTCACAATAT+GGG + chr4_2:36596276-36596295 Msa0598860:intron 30.0%
CACAATATGGGTATGTAATA+TGG + chr4_2:36596288-36596307 Msa0598860:intron 30.0%
! GTATGTAATATGGGATGTTT+TGG + chr4_2:36596298-36596317 Msa0598860:intron 30.0%
TGCAACGGTGACAATATTTA+GGG - chr4_2:36595094-36595113 None:intergenic 35.0%
! TTGATTCTGTTTCTCTGCAA+CGG - chr4_2:36595109-36595128 None:intergenic 35.0%
TTAGAACTTGACAGAAACAG+TGG + chr4_2:36595179-36595198 Msa0598860:CDS 35.0%
AGTGGAAGAGATAGTGAAAT+TGG + chr4_2:36595208-36595227 Msa0598860:CDS 35.0%
GAACTCAAAAAGAAGAACAG+TGG + chr4_2:36595281-36595300 Msa0598860:CDS 35.0%
CAGGTTATGTCATGTATTCT+TGG + chr4_2:36595336-36595355 Msa0598860:CDS 35.0%
AGCTTAAAAAAGAGTGGAGT+TGG - chr4_2:36595402-36595421 None:intergenic 35.0%
! TTTTGTAAGTGTGACTCTGT+TGG + chr4_2:36595598-36595617 Msa0598860:intron 35.0%
TGATTTGAGCAAAAGGCTAA+AGG - chr4_2:36595907-36595926 None:intergenic 35.0%
!! ACTCAACTGATTTGAGCAAA+AGG - chr4_2:36595914-36595933 None:intergenic 35.0%
CAATGTCGATATAGTTAGGT+TGG - chr4_2:36596151-36596170 None:intergenic 35.0%
CTGACAATGTCGATATAGTT+AGG - chr4_2:36596155-36596174 None:intergenic 35.0%
CTATATCGACATTGTCAGTT+AGG + chr4_2:36596157-36596176 Msa0598860:intron 35.0%
!! ATGCGAATCCTTTGATTTGT+TGG + chr4_2:36596260-36596279 Msa0598860:intron 35.0%
GTGAGTAACCAACAAATCAA+AGG - chr4_2:36596271-36596290 None:intergenic 35.0%
!!! TTTTGGTTCTTCTGTAGTGA+AGG + chr4_2:36596315-36596334 Msa0598860:intron 35.0%
TGGACTTCGATTCAAATTGA+AGG + chr4_2:36596542-36596561 Msa0598860:CDS 35.0%
GGAACATTGTGTTTGTAACA+TGG + chr4_2:36596622-36596641 Msa0598860:three_prime_UTR 35.0%
TGCAACGGTGACAATATTTA+GGG - chr4_2:36595094-36595113 None:intergenic 35.0%
! TTGATTCTGTTTCTCTGCAA+CGG - chr4_2:36595109-36595128 None:intergenic 35.0%
TTAGAACTTGACAGAAACAG+TGG + chr4_2:36595179-36595198 Msa0598860:CDS 35.0%
AGTGGAAGAGATAGTGAAAT+TGG + chr4_2:36595208-36595227 Msa0598860:CDS 35.0%
GAACTCAAAAAGAAGAACAG+TGG + chr4_2:36595281-36595300 Msa0598860:CDS 35.0%
CAGGTTATGTCATGTATTCT+TGG + chr4_2:36595336-36595355 Msa0598860:CDS 35.0%
AGCTTAAAAAAGAGTGGAGT+TGG - chr4_2:36595402-36595421 None:intergenic 35.0%
! TTTTGTAAGTGTGACTCTGT+TGG + chr4_2:36595598-36595617 Msa0598860:intron 35.0%
TGATTTGAGCAAAAGGCTAA+AGG - chr4_2:36595907-36595926 None:intergenic 35.0%
!! ACTCAACTGATTTGAGCAAA+AGG - chr4_2:36595914-36595933 None:intergenic 35.0%
CAATGTCGATATAGTTAGGT+TGG - chr4_2:36596151-36596170 None:intergenic 35.0%
CTGACAATGTCGATATAGTT+AGG - chr4_2:36596155-36596174 None:intergenic 35.0%
CTATATCGACATTGTCAGTT+AGG + chr4_2:36596157-36596176 Msa0598860:intron 35.0%
!! ATGCGAATCCTTTGATTTGT+TGG + chr4_2:36596260-36596279 Msa0598860:intron 35.0%
GTGAGTAACCAACAAATCAA+AGG - chr4_2:36596271-36596290 None:intergenic 35.0%
!!! TTTTGGTTCTTCTGTAGTGA+AGG + chr4_2:36596315-36596334 Msa0598860:intron 35.0%
TGGACTTCGATTCAAATTGA+AGG + chr4_2:36596542-36596561 Msa0598860:CDS 35.0%
GGAACATTGTGTTTGTAACA+TGG + chr4_2:36596622-36596641 Msa0598860:three_prime_UTR 35.0%
CTGCAACGGTGACAATATTT+AGG - chr4_2:36595095-36595114 None:intergenic 40.0%
CATGACATAACCTGCAAGTT+GGG - chr4_2:36595330-36595349 None:intergenic 40.0%
ACATGACATAACCTGCAAGT+TGG - chr4_2:36595331-36595350 None:intergenic 40.0%
! CTGTTGGTAAGCTTGGATAT+TGG + chr4_2:36595614-36595633 Msa0598860:intron 40.0%
AAGCTTGGATATTGGTATGC+AGG + chr4_2:36595622-36595641 Msa0598860:intron 40.0%
AGCTTGGATATTGGTATGCA+GGG + chr4_2:36595623-36595642 Msa0598860:intron 40.0%
CTGTGTGTGTGAATTTCATG+TGG - chr4_2:36596094-36596113 None:intergenic 40.0%
GCAGAACAAGAAAAGTTTCG+CGG + chr4_2:36596395-36596414 Msa0598860:CDS 40.0%
CTGAATCTGTACAAGAAGCA+TGG + chr4_2:36596454-36596473 Msa0598860:CDS 40.0%
! TGGCTTTCATGTTGACTGTT+TGG + chr4_2:36596474-36596493 Msa0598860:CDS 40.0%
GGAACATTGTGTTTGTGACA+TGG + chr4_2:36596702-36596721 Msa0598860:three_prime_UTR 40.0%
CTGCAACGGTGACAATATTT+AGG - chr4_2:36595095-36595114 None:intergenic 40.0%
CATGACATAACCTGCAAGTT+GGG - chr4_2:36595330-36595349 None:intergenic 40.0%
ACATGACATAACCTGCAAGT+TGG - chr4_2:36595331-36595350 None:intergenic 40.0%
! CTGTTGGTAAGCTTGGATAT+TGG + chr4_2:36595614-36595633 Msa0598860:intron 40.0%
AAGCTTGGATATTGGTATGC+AGG + chr4_2:36595622-36595641 Msa0598860:intron 40.0%
AGCTTGGATATTGGTATGCA+GGG + chr4_2:36595623-36595642 Msa0598860:intron 40.0%
CTGTGTGTGTGAATTTCATG+TGG - chr4_2:36596094-36596113 None:intergenic 40.0%
GCAGAACAAGAAAAGTTTCG+CGG + chr4_2:36596395-36596414 Msa0598860:CDS 40.0%
CTGAATCTGTACAAGAAGCA+TGG + chr4_2:36596454-36596473 Msa0598860:CDS 40.0%
! TGGCTTTCATGTTGACTGTT+TGG + chr4_2:36596474-36596493 Msa0598860:CDS 40.0%
GGAACATTGTGTTTGTGACA+TGG + chr4_2:36596702-36596721 Msa0598860:three_prime_UTR 40.0%
CAGAAACAGTGGTAAAGCAG+TGG + chr4_2:36595190-36595209 Msa0598860:CDS 45.0%
GAAGCGAGTGATTCGTGTTT+GGG - chr4_2:36595248-36595267 None:intergenic 45.0%
! TGTGACTCTGTTGGTAAGCT+TGG + chr4_2:36595607-36595626 Msa0598860:intron 45.0%
GGATATTGGTATGCAGGGTT+CGG + chr4_2:36595628-36595647 Msa0598860:intron 45.0%
GATATTGGTATGCAGGGTTC+GGG + chr4_2:36595629-36595648 Msa0598860:intron 45.0%
TGAGCAAAAGGCTAAAGGCA+GGG - chr4_2:36595902-36595921 None:intergenic 45.0%
TTGAGCAAAAGGCTAAAGGC+AGG - chr4_2:36595903-36595922 None:intergenic 45.0%
AATTCACACACACAGCTGCA+AGG + chr4_2:36596099-36596118 Msa0598860:intron 45.0%
CTTCTGTAGTGAAGGAGCAA+TGG + chr4_2:36596323-36596342 Msa0598860:intron 45.0%
TGGAGAGGTTCTACTGAAAG+CGG + chr4_2:36596360-36596379 Msa0598860:CDS 45.0%
TTCTTGTACAGATTCAGCGC+AGG - chr4_2:36596451-36596470 None:intergenic 45.0%
! CATGTTGACTGTTTGGTCGT+AGG + chr4_2:36596481-36596500 Msa0598860:CDS 45.0%
CAGAAACAGTGGTAAAGCAG+TGG + chr4_2:36595190-36595209 Msa0598860:CDS 45.0%
GAAGCGAGTGATTCGTGTTT+GGG - chr4_2:36595248-36595267 None:intergenic 45.0%
! TGTGACTCTGTTGGTAAGCT+TGG + chr4_2:36595607-36595626 Msa0598860:intron 45.0%
GGATATTGGTATGCAGGGTT+CGG + chr4_2:36595628-36595647 Msa0598860:intron 45.0%
GATATTGGTATGCAGGGTTC+GGG + chr4_2:36595629-36595648 Msa0598860:intron 45.0%
TGAGCAAAAGGCTAAAGGCA+GGG - chr4_2:36595902-36595921 None:intergenic 45.0%
TTGAGCAAAAGGCTAAAGGC+AGG - chr4_2:36595903-36595922 None:intergenic 45.0%
AATTCACACACACAGCTGCA+AGG + chr4_2:36596099-36596118 Msa0598860:intron 45.0%
CTTCTGTAGTGAAGGAGCAA+TGG + chr4_2:36596323-36596342 Msa0598860:intron 45.0%
TGGAGAGGTTCTACTGAAAG+CGG + chr4_2:36596360-36596379 Msa0598860:CDS 45.0%
TTCTTGTACAGATTCAGCGC+AGG - chr4_2:36596451-36596470 None:intergenic 45.0%
! CATGTTGACTGTTTGGTCGT+AGG + chr4_2:36596481-36596500 Msa0598860:CDS 45.0%
GGAAGCGAGTGATTCGTGTT+TGG - chr4_2:36595249-36595268 None:intergenic 50.0%
GGTTCGAACCATTTAGCCAG+TGG + chr4_2:36595658-36595677 Msa0598860:intron 50.0%
TCGAACCATTTAGCCAGTGG+CGG + chr4_2:36595661-36595680 Msa0598860:intron 50.0%
!! AATAATTCTGGCTCCGCCAC+TGG - chr4_2:36595677-36595696 None:intergenic 50.0%
AAAAAATTGGACCGGAGCCC+AGG + chr4_2:36595843-36595862 Msa0598860:intron 50.0%
! TAAAGGCAGGGGTGGTTCTA+AGG - chr4_2:36595890-36595909 None:intergenic 50.0%
GAGCAAAAGGCTAAAGGCAG+GGG - chr4_2:36595901-36595920 None:intergenic 50.0%
ACACACAGCTGCAAGGTCTT+GGG + chr4_2:36596106-36596125 Msa0598860:intron 50.0%
CTGTAGTGAAGGAGCAATGG+AGG + chr4_2:36596326-36596345 Msa0598860:intron 50.0%
TAGTGAAGGAGCAATGGAGG+AGG + chr4_2:36596329-36596348 Msa0598860:intron 50.0%
GGAAGCGAGTGATTCGTGTT+TGG - chr4_2:36595249-36595268 None:intergenic 50.0%
GGTTCGAACCATTTAGCCAG+TGG + chr4_2:36595658-36595677 Msa0598860:intron 50.0%
TCGAACCATTTAGCCAGTGG+CGG + chr4_2:36595661-36595680 Msa0598860:intron 50.0%
!! AATAATTCTGGCTCCGCCAC+TGG - chr4_2:36595677-36595696 None:intergenic 50.0%
AAAAAATTGGACCGGAGCCC+AGG + chr4_2:36595843-36595862 Msa0598860:intron 50.0%
! TAAAGGCAGGGGTGGTTCTA+AGG - chr4_2:36595890-36595909 None:intergenic 50.0%
GAGCAAAAGGCTAAAGGCAG+GGG - chr4_2:36595901-36595920 None:intergenic 50.0%
ACACACAGCTGCAAGGTCTT+GGG + chr4_2:36596106-36596125 Msa0598860:intron 50.0%
CTGTAGTGAAGGAGCAATGG+AGG + chr4_2:36596326-36596345 Msa0598860:intron 50.0%
TAGTGAAGGAGCAATGGAGG+AGG + chr4_2:36596329-36596348 Msa0598860:intron 50.0%
GCTTACTCACGCACGAGTGA+TGG + chr4_2:36595142-36595161 Msa0598860:exon 55.0%
CGCACGAGTGATGGCAAATG+TGG + chr4_2:36595151-36595170 Msa0598860:exon 55.0%
CACGTTGATGCCCAACTTGC+AGG + chr4_2:36595317-36595336 Msa0598860:CDS 55.0%
GCTTCTATCACCAAGCTCGC+AGG + chr4_2:36595374-36595393 Msa0598860:CDS 55.0%
GGTATGCAGGGTTCGGGATT+CGG + chr4_2:36595635-36595654 Msa0598860:intron 55.0%
GTATGCAGGGTTCGGGATTC+GGG + chr4_2:36595636-36595655 Msa0598860:intron 55.0%
TATGCAGGGTTCGGGATTCG+GGG + chr4_2:36595637-36595656 Msa0598860:intron 55.0%
CAAAAGGCTAAAGGCAGGGG+TGG - chr4_2:36595898-36595917 None:intergenic 55.0%
CACACACAGCTGCAAGGTCT+TGG + chr4_2:36596105-36596124 Msa0598860:intron 55.0%
AAGGAGCAATGGAGGAGGCA+AGG + chr4_2:36596334-36596353 Msa0598860:CDS 55.0%
CAATGGAGGAGGCAAGGACA+TGG + chr4_2:36596340-36596359 Msa0598860:CDS 55.0%
TGCTTCACGTCGATCCGTTG+AGG + chr4_2:36596422-36596441 Msa0598860:CDS 55.0%
TTCAGCGCAGGTGTCCTCAA+CGG - chr4_2:36596439-36596458 None:intergenic 55.0%
GCTTACTCACGCACGAGTGA+TGG + chr4_2:36595142-36595161 Msa0598860:exon 55.0%
CGCACGAGTGATGGCAAATG+TGG + chr4_2:36595151-36595170 Msa0598860:exon 55.0%
CACGTTGATGCCCAACTTGC+AGG + chr4_2:36595317-36595336 Msa0598860:CDS 55.0%
GCTTCTATCACCAAGCTCGC+AGG + chr4_2:36595374-36595393 Msa0598860:CDS 55.0%
GGTATGCAGGGTTCGGGATT+CGG + chr4_2:36595635-36595654 Msa0598860:intron 55.0%
GTATGCAGGGTTCGGGATTC+GGG + chr4_2:36595636-36595655 Msa0598860:intron 55.0%
TATGCAGGGTTCGGGATTCG+GGG + chr4_2:36595637-36595656 Msa0598860:intron 55.0%
CAAAAGGCTAAAGGCAGGGG+TGG - chr4_2:36595898-36595917 None:intergenic 55.0%
CACACACAGCTGCAAGGTCT+TGG + chr4_2:36596105-36596124 Msa0598860:intron 55.0%
AAGGAGCAATGGAGGAGGCA+AGG + chr4_2:36596334-36596353 Msa0598860:CDS 55.0%
CAATGGAGGAGGCAAGGACA+TGG + chr4_2:36596340-36596359 Msa0598860:CDS 55.0%
TGCTTCACGTCGATCCGTTG+AGG + chr4_2:36596422-36596441 Msa0598860:CDS 55.0%
TTCAGCGCAGGTGTCCTCAA+CGG - chr4_2:36596439-36596458 None:intergenic 55.0%
GGAGTTGGAACCTGCGAGCT+TGG - chr4_2:36595387-36595406 None:intergenic 60.0%
! TGGCTCCGCCACTGGCTAAA+TGG - chr4_2:36595669-36595688 None:intergenic 60.0%
GAGGAGGCAAGGACATGGAG+AGG + chr4_2:36596345-36596364 Msa0598860:CDS 60.0%
GGAGTTGGAACCTGCGAGCT+TGG - chr4_2:36595387-36595406 None:intergenic 60.0%
! TGGCTCCGCCACTGGCTAAA+TGG - chr4_2:36595669-36595688 None:intergenic 60.0%
GAGGAGGCAAGGACATGGAG+AGG + chr4_2:36596345-36596364 Msa0598860:CDS 60.0%
!! TTCTAAGGCCCGGCGAGCCT+GGG - chr4_2:36595875-36595894 None:intergenic 65.0%
!! GCAGGGGTGGTTCTAAGGCC+CGG - chr4_2:36595885-36595904 None:intergenic 65.0%
!! TTCTAAGGCCCGGCGAGCCT+GGG - chr4_2:36595875-36595894 None:intergenic 65.0%
!! GCAGGGGTGGTTCTAAGGCC+CGG - chr4_2:36595885-36595904 None:intergenic 65.0%
CTGGGCAGTTGCCTGGGCTC+CGG - chr4_2:36595857-36595876 None:intergenic 70.0%
GCGAGCCTGGGCAGTTGCCT+GGG - chr4_2:36595863-36595882 None:intergenic 70.0%
AGGCAACTGCCCAGGCTCGC+CGG + chr4_2:36595863-36595882 Msa0598860:intron 70.0%
!! GTTCTAAGGCCCGGCGAGCC+TGG - chr4_2:36595876-36595895 None:intergenic 70.0%
CTGGGCAGTTGCCTGGGCTC+CGG - chr4_2:36595857-36595876 None:intergenic 70.0%
GCGAGCCTGGGCAGTTGCCT+GGG - chr4_2:36595863-36595882 None:intergenic 70.0%
AGGCAACTGCCCAGGCTCGC+CGG + chr4_2:36595863-36595882 Msa0598860:intron 70.0%
!! GTTCTAAGGCCCGGCGAGCC+TGG - chr4_2:36595876-36595895 None:intergenic 70.0%
CGGAGCCCAGGCAACTGCCC+AGG + chr4_2:36595855-36595874 Msa0598860:intron 75.0%
GGCGAGCCTGGGCAGTTGCC+TGG - chr4_2:36595864-36595883 None:intergenic 75.0%
GGCAACTGCCCAGGCTCGCC+GGG + chr4_2:36595864-36595883 Msa0598860:intron 75.0%
CGGAGCCCAGGCAACTGCCC+AGG + chr4_2:36595855-36595874 Msa0598860:intron 75.0%
GGCGAGCCTGGGCAGTTGCC+TGG - chr4_2:36595864-36595883 None:intergenic 75.0%
GGCAACTGCCCAGGCTCGCC+GGG + chr4_2:36595864-36595883 Msa0598860:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 36595031 36596745 36595031 ID=Msa0598860;Name=Msa0598860
chr4_2 mRNA 36595031 36596745 36595031 ID=Msa0598860-mRNA-1;Parent=Msa0598860;Name=Msa0598860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|2|184|154
chr4_2 exon 36595031 36595395 36595031 ID=Msa0598860-mRNA-1:exon:8291;Parent=Msa0598860-mRNA-1
chr4_2 exon 36596332 36596745 36596332 ID=Msa0598860-mRNA-1:exon:8292;Parent=Msa0598860-mRNA-1
chr4_2 five_prime_UTR 36595031 36595160 36595031 ID=Msa0598860-mRNA-1:five_prime_utr;Parent=Msa0598860-mRNA-1
chr4_2 CDS 36595161 36595395 36595161 ID=Msa0598860-mRNA-1:cds;Parent=Msa0598860-mRNA-1
chr4_2 CDS 36596332 36596561 36596332 ID=Msa0598860-mRNA-1:cds;Parent=Msa0598860-mRNA-1
chr4_2 three_prime_UTR 36596562 36596745 36596562 ID=Msa0598860-mRNA-1:three_prime_utr;Parent=Msa0598860-mRNA-1
Gene Sequence

>Msa0598860

ATGGCAAATGTGGAGATTTTAGAACTTGACAGAAACAGTGGTAAAGCAGTGGAAGAGATAGTGAAATTGGAGAGAAAGATATTTCCCAAACACGAATCACTCGCTTCCTTCTTTGAAAATGAACTCAAAAAGAAGAACAGTGGATTGCTTTATCTTCACGTTGATGCCCAACTTGCAGGTTATGTCATGTATTCTTGGCCTTCTTCATTGTATGCTTCTATCACCAAGCTCGCAGTGAAGGAGCAATGGAGGAGGCAAGGACATGGAGAGGTTCTACTGAAAGCGGCAATCGAGAAATGCAGAACAAGAAAAGTTTCGCGGATAATGCTTCACGTCGATCCGTTGAGGACACCTGCGCTGAATCTGTACAAGAAGCATGGCTTTCATGTTGACTGTTTGGTCGTAGGCTATTACTCTTCTGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAATTGA

Protein sequence

>Msa0598860

MANVEILELDRNSGKAVEEIVKLERKIFPKHESLASFFENELKKKNSGLLYLHVDAQLAGYVMYSWPSSLYASITKLAVKEQWRRQGHGEVLLKAAIEKCRTRKVSRIMLHVDPLRTPALNLYKKHGFHVDCLVVGYYSSDRNAYRMYLDFDSN*