AlfalfaGEDB | Msa0542750

M. sativa cultivar zhongmu-4 / Msa0542750

KEGG: -
GO: -
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542750	XP_013455584.1	97.403	154	4	0	1	154	1	154	4.01e-107	312

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542750	sp\|O05517\|RIMI_BACSU	29.600	125	87	1	17	141	15	138	1.62e-11	61.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542750	G7ZX36	97.403	154	4	0	1	154	1	154	1.91e-107	312

TFs/TRs:

Gene ID	Type	Classification
Msa0542750	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0542750	0.820507	6.613138e-53	-8.615850e-47
Msa0006070	Msa0542750	0.823820	1.127253e-53	-8.615850e-47
Msa0011170	Msa0542750	0.807723	4.398033e-50	-8.615850e-47
Msa0011960	Msa0542750	0.841214	5.442565e-58	-8.615850e-47
Msa0012080	Msa0542750	0.806360	8.542539e-50	-8.615850e-47
Msa0021510	Msa0542750	0.808775	2.624460e-50	-8.615850e-47
Msa0028660	Msa0542750	0.816687	4.862681e-52	-8.615850e-47
Msa0032090	Msa0542750	0.807938	3.958387e-50	-8.615850e-47
Msa0032580	Msa0542750	0.832308	1.017998e-55	-8.615850e-47
Msa0040690	Msa0542750	0.806352	8.575975e-50	-8.615850e-47
Msa0053600	Msa0542750	0.800563	1.359066e-48	-8.615850e-47
Msa0054440	Msa0542750	0.813775	2.157897e-51	-8.615850e-47
Msa0054480	Msa0542750	0.840720	7.335961e-58	-8.615850e-47
Msa0058300	Msa0542750	0.808563	2.912770e-50	-8.615850e-47
Msa0061080	Msa0542750	0.830125	3.501787e-55	-8.615850e-47
Msa0076320	Msa0542750	0.800102	1.687196e-48	-8.615850e-47
Msa0078900	Msa0542750	0.817846	2.668369e-52	-8.615850e-47
Msa0079380	Msa0542750	0.813476	2.511436e-51	-8.615850e-47
Msa0084380	Msa0542750	0.800801	1.215120e-48	-8.615850e-47
Msa0091210	Msa0542750	-0.811318	7.432597e-51	-8.615850e-47
Msa0091250	Msa0542750	-0.818445	1.953434e-52	-8.615850e-47
Msa0099220	Msa0542750	0.802302	5.984292e-49	-8.615850e-47
Msa0105620	Msa0542750	0.848332	6.558461e-60	-8.615850e-47
Msa0116770	Msa0542750	0.801183	1.015642e-48	-8.615850e-47
Msa0126610	Msa0542750	0.806552	7.783574e-50	-8.615850e-47
Msa0127050	Msa0542750	0.815007	1.152656e-51	-8.615850e-47
Msa0136070	Msa0542750	0.847476	1.129049e-59	-8.615850e-47
Msa0136100	Msa0542750	0.814609	1.411991e-51	-8.615850e-47
Msa0145440	Msa0542750	0.812311	4.519917e-51	-8.615850e-47
Msa0150820	Msa0542750	0.833025	6.759721e-56	-8.615850e-47
Msa0159340	Msa0542750	0.821586	3.731657e-53	-8.615850e-47
Msa0160550	Msa0542750	0.851575	8.119407e-61	-8.615850e-47
Msa0165220	Msa0542750	0.805019	1.633550e-49	-8.615850e-47
Msa0165660	Msa0542750	0.820120	8.111950e-53	-8.615850e-47
Msa0168230	Msa0542750	0.805893	1.071428e-49	-8.615850e-47
Msa0169310	Msa0542750	0.806616	7.545450e-50	-8.615850e-47
Msa0171540	Msa0542750	0.839918	1.188577e-57	-8.615850e-47
Msa0172970	Msa0542750	0.828840	7.186469e-55	-8.615850e-47
Msa0187120	Msa0542750	0.836312	1.007179e-56	-8.615850e-47
Msa0189010	Msa0542750	0.800251	1.573494e-48	-8.615850e-47
Msa0197660	Msa0542750	0.806766	7.014435e-50	-8.615850e-47
Msa0218270	Msa0542750	0.810821	9.524631e-51	-8.615850e-47
Msa0220720	Msa0542750	0.813882	2.043545e-51	-8.615850e-47
Msa0222890	Msa0542750	0.816604	5.075309e-52	-8.615850e-47
Msa0228070	Msa0542750	0.818702	1.708116e-52	-8.615850e-47
Msa0372340	Msa0542750	0.824797	6.643171e-54	-8.615850e-47
Msa0383800	Msa0542750	0.821203	4.574648e-53	-8.615850e-47
Msa0397750	Msa0542750	0.813047	3.119257e-51	-8.615850e-47
Msa0402790	Msa0542750	0.813952	1.972239e-51	-8.615850e-47
Msa0416650	Msa0542750	0.800780	1.227360e-48	-8.615850e-47
Msa0433640	Msa0542750	0.801579	8.422567e-49	-8.615850e-47
Msa0434180	Msa0542750	0.809488	1.845781e-50	-8.615850e-47
Msa0434740	Msa0542750	0.801111	1.050313e-48	-8.615850e-47
Msa0435690	Msa0542750	0.801442	8.985623e-49	-8.615850e-47
Msa0479660	Msa0542750	0.820549	6.467675e-53	-8.615850e-47
Msa0481530	Msa0542750	0.815265	1.009889e-51	-8.615850e-47
Msa0239800	Msa0542750	0.808020	3.802621e-50	-8.615850e-47
Msa0241470	Msa0542750	0.804100	2.539763e-49	-8.615850e-47
Msa0255080	Msa0542750	0.804830	1.789489e-49	-8.615850e-47
Msa0259370	Msa0542750	0.800019	1.753982e-48	-8.615850e-47
Msa0260680	Msa0542750	0.829073	6.310405e-55	-8.615850e-47
Msa0267370	Msa0542750	0.809873	1.526088e-50	-8.615850e-47
Msa0279220	Msa0542750	0.824288	8.755657e-54	-8.615850e-47
Msa0279240	Msa0542750	0.810010	1.425409e-50	-8.615850e-47
Msa0279700	Msa0542750	0.832692	8.175672e-56	-8.615850e-47
Msa0279790	Msa0542750	0.810745	9.895934e-51	-8.615850e-47
Msa0280090	Msa0542750	0.811088	8.338754e-51	-8.615850e-47
Msa0288100	Msa0542750	0.809317	2.008835e-50	-8.615850e-47
Msa0298700	Msa0542750	0.800483	1.411217e-48	-8.615850e-47
Msa0299870	Msa0542750	0.828274	9.846374e-55	-8.615850e-47
Msa0309750	Msa0542750	0.824017	1.013409e-53	-8.615850e-47
Msa0309770	Msa0542750	0.844671	6.543964e-59	-8.615850e-47
Msa0317510	Msa0542750	0.809998	1.433840e-50	-8.615850e-47
Msa0318980	Msa0542750	0.820184	7.843266e-53	-8.615850e-47
Msa0333030	Msa0542750	0.806063	9.864742e-50	-8.615850e-47
Msa0336420	Msa0542750	0.806393	8.406711e-50	-8.615850e-47
Msa0337620	Msa0542750	0.820036	8.480724e-53	-8.615850e-47
Msa0340450	Msa0542750	0.805243	1.466549e-49	-8.615850e-47
Msa0483850	Msa0542750	0.809605	1.742154e-50	-8.615850e-47
Msa0487800	Msa0542750	0.805600	1.234131e-49	-8.615850e-47
Msa0493410	Msa0542750	0.804775	1.836904e-49	-8.615850e-47
Msa0512750	Msa0542750	0.808082	3.687999e-50	-8.615850e-47
Msa0529890	Msa0542750	0.822130	2.793366e-53	-8.615850e-47
Msa0530260	Msa0542750	0.830493	2.847517e-55	-8.615850e-47
Msa0542130	Msa0542750	0.801366	9.314198e-49	-8.615850e-47
Msa0542750	Msa0547320	0.802971	4.355373e-49	-8.615850e-47
Msa0542750	Msa0555450	0.813220	2.857813e-51	-8.615850e-47
Msa0542750	Msa0572840	0.801754	7.757165e-49	-8.615850e-47
Msa0542750	Msa0585560	0.822045	2.922737e-53	-8.615850e-47
Msa0542750	Msa0592440	0.801672	8.064115e-49	-8.615850e-47
Msa0542750	Msa0593650	0.804984	1.661589e-49	-8.615850e-47
Msa0542750	Msa0598860	0.942261	9.830247e-102	-8.615850e-47
Msa0542750	Msa0607050	0.803445	3.474794e-49	-8.615850e-47
Msa0542750	Msa0610430	0.838456	2.845498e-57	-8.615850e-47
Msa0542750	Msa0617640	0.813127	2.995162e-51	-8.615850e-47
Msa0542750	Msa0621490	0.800339	1.509865e-48	-8.615850e-47
Msa0542750	Msa0625720	0.819334	1.226813e-52	-8.615850e-47
Msa0542750	Msa0641670	0.801258	9.799514e-49	-8.615850e-47
Msa0542750	Msa0643180	0.807776	4.285568e-50	-8.615850e-47
Msa0542750	Msa0643560	0.800453	1.431027e-48	-8.615850e-47
Msa0542750	Msa0644850	0.808848	2.531745e-50	-8.615850e-47
Msa0542750	Msa0661190	-0.803815	2.911255e-49	-8.615850e-47
Msa0542750	Msa0661650	0.801911	7.200163e-49	-8.615850e-47
Msa0542750	Msa0663390	0.826698	2.352186e-54	-8.615850e-47
Msa0542750	Msa0665050	0.802997	4.301168e-49	-8.615850e-47
Msa0542750	Msa0673460	0.802271	6.073032e-49	-8.615850e-47
Msa0542750	Msa0679290	-0.800375	1.484350e-48	-8.615850e-47
Msa0542750	Msa0682840	0.807690	4.468551e-50	-8.615850e-47
Msa0542750	Msa0688960	0.802641	5.094367e-49	-8.615850e-47
Msa0542750	Msa0689260	0.802091	6.612148e-49	-8.615850e-47
Msa0542750	Msa0692830	0.820706	5.952873e-53	-8.615850e-47
Msa0542750	Msa0692950	0.822022	2.958076e-53	-8.615850e-47
Msa0542750	Msa0707250	0.813257	2.804960e-51	-8.615850e-47
Msa0542750	Msa0708520	0.805344	1.396497e-49	-8.615850e-47
Msa0542750	Msa0711780	0.812312	4.517003e-51	-8.615850e-47
Msa0542750	Msa0715700	0.817090	3.949007e-52	-8.615850e-47
Msa0542750	Msa0716840	0.836729	7.887775e-57	-8.615850e-47
Msa0542750	Msa0743720	0.816092	6.607935e-52	-8.615850e-47
Msa0542750	Msa0743950	0.810425	1.160264e-50	-8.615850e-47
Msa0542750	Msa0745790	0.820500	6.636746e-53	-8.615850e-47
Msa0542750	Msa0793800	0.852642	4.036670e-61	-8.615850e-47
Msa0542750	Msa0794670	0.817982	2.485258e-52	-8.615850e-47
Msa0542750	Msa0795090	0.812040	5.178774e-51	-8.615850e-47
Msa0542750	Msa0796530	0.803985	2.684607e-49	-8.615850e-47
Msa0542750	Msa0808270	0.838934	2.141376e-57	-8.615850e-47
Msa0542750	Msa0813740	0.802698	4.958218e-49	-8.615850e-47
Msa0542750	Msa0816700	0.802884	4.538579e-49	-8.615850e-47
Msa0542750	Msa0827040	0.801210	1.002642e-48	-8.615850e-47
Msa0542750	Msa0831530	0.815851	7.480941e-52	-8.615850e-47
Msa0542750	Msa0864250	0.814102	1.828001e-51	-8.615850e-47
Msa0542750	Msa0871270	0.828585	8.282653e-55	-8.615850e-47
Msa0542750	Msa0876810	0.814152	1.781578e-51	-8.615850e-47
Msa0542750	Msa0897330	0.811897	5.562876e-51	-8.615850e-47
Msa0542750	Msa0938220	0.842378	2.683041e-58	-8.615850e-47
Msa0542750	Msa0947660	0.802635	5.109547e-49	-8.615850e-47
Msa0542750	Msa0959360	0.802205	6.264272e-49	-8.615850e-47
Msa0542750	Msa0969810	0.811210	7.846521e-51	-8.615850e-47
Msa0542750	Msa0974070	0.832445	9.413984e-56	-8.615850e-47
Msa0542750	Msa0993290	0.805649	1.205479e-49	-8.615850e-47
Msa0542750	Msa0993600	0.802910	4.482204e-49	-8.615850e-47
Msa0542750	Msa0999970	0.836610	8.457680e-57	-8.615850e-47
Msa0542750	Msa1003620	0.824213	9.118986e-54	-8.615850e-47
Msa0542750	Msa1009820	0.814837	1.257167e-51	-8.615850e-47
Msa0542750	Msa1012830	0.803307	3.710354e-49	-8.615850e-47
Msa0542750	Msa1014540	0.825857	3.728705e-54	-8.615850e-47
Msa0542750	Msa1037420	0.801329	9.478069e-49	-8.615850e-47
Msa0542750	Msa1046460	0.821517	3.872374e-53	-8.615850e-47
Msa0542750	Msa1051200	0.836565	8.686181e-57	-8.615850e-47
Msa0542750	Msa1058710	0.803319	3.689966e-49	-8.615850e-47
Msa0542750	Msa1075540	0.807353	5.268305e-50	-8.615850e-47
Msa0542750	Msa1075650	0.800658	1.299651e-48	-8.615850e-47
Msa0542750	Msa1087710	0.839731	1.330000e-57	-8.615850e-47
Msa0542750	Msa1088640	0.841111	5.793560e-58	-8.615850e-47
Msa0542750	Msa1100050	0.809032	2.312061e-50	-8.615850e-47
Msa0542750	Msa1103980	0.802318	5.938324e-49	-8.615850e-47
Msa0542750	Msa1104090	0.815647	8.304935e-52	-8.615850e-47
Msa0542750	Msa1104370	0.801230	9.931451e-49	-8.615850e-47
Msa0542750	Msa1111870	0.802583	5.236023e-49	-8.615850e-47
Msa0542750	Msa1113170	0.811872	5.632044e-51	-8.615850e-47
Msa0542750	Msa1131220	0.815899	7.297665e-52	-8.615850e-47
Msa0542750	Msa1135470	0.811029	8.588679e-51	-8.615850e-47
Msa0542750	Msa1137570	0.800597	1.337402e-48	-8.615850e-47
Msa0542750	Msa1137700	0.810382	1.185320e-50	-8.615850e-47
Msa0542750	Msa1150210	0.805924	1.055407e-49	-8.615850e-47
Msa0542750	Msa1154280	0.813060	3.098449e-51	-8.615850e-47
Msa0542750	Msa1162780	0.820155	7.963967e-53	-8.615850e-47
Msa0542750	Msa1181250	0.810085	1.373753e-50	-8.615850e-47
Msa0542750	Msa1181330	0.800146	1.652889e-48	-8.615850e-47
Msa0542750	Msa1186950	-0.802633	5.114680e-49	-8.615850e-47
Msa0542750	Msa1208880	0.809588	1.757120e-50	-8.615850e-47
Msa0542750	Msa1210020	0.807886	4.060206e-50	-8.615850e-47
Msa0542750	Msa1224810	0.803447	3.471828e-49	-8.615850e-47
Msa0542750	Msa1245930	0.808392	3.167381e-50	-8.615850e-47
Msa0542750	Msa1253020	0.813468	2.520642e-51	-8.615850e-47
Msa0542750	Msa1259060	0.813521	2.454111e-51	-8.615850e-47
Msa0542750	Msa1277660	0.815605	8.484551e-52	-8.615850e-47
Msa0542750	Msa1282580	-0.800448	1.434590e-48	-8.615850e-47
Msa0542750	Msa1284680	0.801269	9.750876e-49	-8.615850e-47
Msa0542750	Msa1287460	0.804580	2.017726e-49	-8.615850e-47
Msa0542750	Msa1298510	0.809991	1.439133e-50	-8.615850e-47
Msa0542750	Msa1302850	0.821840	3.259342e-53	-8.615850e-47
Msa0542750	Msa1305340	0.806029	1.003092e-49	-8.615850e-47
Msa0542750	Msa1306920	0.814522	1.475783e-51	-8.615850e-47
Msa0542750	Msa1332040	-0.801503	8.733427e-49	-8.615850e-47
Msa0542750	Msa1340470	0.805973	1.030482e-49	-8.615850e-47
Msa0542750	Msa1344340	0.803844	2.870693e-49	-8.615850e-47
Msa0542750	Msa1353330	0.802519	5.397658e-49	-8.615850e-47
Msa0542750	Msa1358250	0.801103	1.054512e-48	-8.615850e-47
Msa0542750	Msa1358670	0.804799	1.815794e-49	-8.615850e-47
Msa0542750	Msa1359040	0.819431	1.165498e-52	-8.615850e-47
Msa0542750	Msa1386780	0.804818	1.799380e-49	-8.615850e-47
Msa0542750	Msa1389800	0.829444	5.130525e-55	-8.615850e-47
Msa0542750	Msa1392780	0.817456	3.267479e-52	-8.615850e-47
Msa0542750	Msa1400580	0.818260	2.150844e-52	-8.615850e-47
Msa0542750	Msa1410100	0.800682	1.285126e-48	-8.615850e-47
Msa0542750	Msa1419960	0.819441	1.159324e-52	-8.615850e-47
Msa0542750	Msa1424750	0.812946	3.282329e-51	-8.615850e-47
Msa0542750	Msa1427230	0.807279	5.463005e-50	-8.615850e-47
Msa0542750	Msa1442210	0.815917	7.231470e-52	-8.615850e-47
Msa0542750	Msa1454480	0.809550	1.790432e-50	-8.615850e-47
Msa0542750	Msa1457920	0.813440	2.557043e-51	-8.615850e-47
Msa0542750	Msa1460830	0.800287	1.547012e-48	-8.615850e-47
Msa0542750	Msa1464270	0.810011	1.424780e-50	-8.615850e-47
Msa0542750	Msa1466540	0.826658	2.403544e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542750	MtrunA17_Chr4g0022511	97.403	154	4	0	1	154	1	154	3.68e-111	312

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542750	AT1G03650.1	68.421	152	45	1	6	154	6	157	8.93e-74	218

Find 37 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGCAACGGTGACAATATTT+AGG	0.161108	4_1:-28111330	None:intergenic
CAGGTTATGTCATGTATTCT+TGG	0.193464	4_1:+28111574	Msa0542750:CDS
CACGTTGATGCCCAACTTGC+AGG	0.261704	4_1:+28111555	Msa0542750:CDS
AGTGGAAGAGATAGTGAAAT+TGG	0.277192	4_1:+28111446	Msa0542750:CDS
TTAAACAAACACAATATTAC+AGG	0.325566	4_1:-28112900	None:intergenic
GAAGCGAGTGATTCGTGTTT+GGG	0.367842	4_1:-28111483	None:intergenic
GGAAGCGAGTGATTCGTGTT+TGG	0.373847	4_1:-28111484	None:intergenic
TGCAACGGTGACAATATTTA+GGG	0.394824	4_1:-28111329	None:intergenic
TGGCTTTCATGTTGACTGTT+TGG	0.425497	4_1:+28112712	Msa0542750:CDS
CATGACATAACCTGCAAGTT+GGG	0.434152	4_1:-28111565	None:intergenic
TTGATTCTGTTTCTCTGCAA+CGG	0.467497	4_1:-28111344	None:intergenic
TGGACTTCGATTCAAATTGA+AGG	0.474763	4_1:+28112780	Msa0542750:CDS
CATGTTGACTGTTTGGTCGT+AGG	0.477074	4_1:+28112719	Msa0542750:CDS
TATTTGATGGACTAAATTGA+CGG	0.491712	4_1:-28111284	None:intergenic
AAATGCTTATAGAATGTACT+TGG	0.517363	4_1:+28112760	Msa0542750:CDS
CAATGGAGGAGGCAAGGACA+TGG	0.517780	4_1:+28112578	Msa0542750:CDS
CGCACGAGTGATGGCAAATG+TGG	0.525694	4_1:+28111389	Msa0542750:exon
ACATGACATAACCTGCAAGT+TGG	0.533996	4_1:-28111566	None:intergenic
GGAGTTGGAACCTGCGAGCT+TGG	0.538376	4_1:-28111622	None:intergenic
GCAGAACAAGAAAAGTTTCG+CGG	0.541873	4_1:+28112633	Msa0542750:CDS
GCTTCTATCACCAAGCTCGC+AGG	0.549548	4_1:+28111612	Msa0542750:CDS
GCTTACTCACGCACGAGTGA+TGG	0.555036	4_1:+28111380	Msa0542750:exon
AAGGAGCAATGGAGGAGGCA+AGG	0.558770	4_1:+28112572	Msa0542750:CDS
TGCTTCACGTCGATCCGTTG+AGG	0.562820	4_1:+28112660	Msa0542750:CDS
ATAGAAGCATACAATGAAGA+AGG	0.562971	4_1:-28111597	None:intergenic
CTTCTGTAGTGAAGGAGCAA+TGG	0.596774	4_1:+28112561	Msa0542750:intron
CTGAATCTGTACAAGAAGCA+TGG	0.599242	4_1:+28112692	Msa0542750:CDS
CTGTAGTGAAGGAGCAATGG+AGG	0.602271	4_1:+28112564	Msa0542750:intron
TAGTGAAGGAGCAATGGAGG+AGG	0.603189	4_1:+28112567	Msa0542750:intron
GGAACATTGTGTTTGTAACA+TGG	0.606394	4_1:+28112860	Msa0542750:three_prime_UTR
TTCAGCGCAGGTGTCCTCAA+CGG	0.620997	4_1:-28112674	None:intergenic
TTCTTGTACAGATTCAGCGC+AGG	0.621123	4_1:-28112686	None:intergenic
CAGAAACAGTGGTAAAGCAG+TGG	0.623501	4_1:+28111428	Msa0542750:CDS
GGAACATTGTGTTTGTGACA+TGG	0.627922	4_1:+28112940	Msa0542750:three_prime_UTR
TGGAGAGGTTCTACTGAAAG+CGG	0.629168	4_1:+28112598	Msa0542750:CDS
TTAGAACTTGACAGAAACAG+TGG	0.638839	4_1:+28111417	Msa0542750:CDS
GAGGAGGCAAGGACATGGAG+AGG	0.658915	4_1:+28112583	Msa0542750:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTAACTATCTTTAATATA+AGG	+	chr4_1:28112422-28112441	Msa0542750:intron	10.0%
!!	ATTAACTATCTTTAATATAA+GGG	+	chr4_1:28112423-28112442	Msa0542750:intron	10.0%
!!	AATTAACTATCTTTAATATA+AGG	+	chr4_1:28112422-28112441	Msa0542750:intron	10.0%
!!	ATTAACTATCTTTAATATAA+GGG	+	chr4_1:28112423-28112442	Msa0542750:intron	10.0%
!!!	ATAGATTTTCATATATTTGA+TGG	-	chr4_1:28111300-28111319	None:intergenic	15.0%
!!	AAAGAAATTATCCAATTTAT+AGG	+	chr4_1:28112015-28112034	Msa0542750:intron	15.0%
!!	AAGAAATTATCCAATTTATA+GGG	+	chr4_1:28112016-28112035	Msa0542750:intron	15.0%
!!	ATAAGAAATTGCAAAAAAAT+TGG	+	chr4_1:28112068-28112087	Msa0542750:intron	15.0%
!!!	ATAGATTTTCATATATTTGA+TGG	-	chr4_1:28111300-28111319	None:intergenic	15.0%
!!	AAAGAAATTATCCAATTTAT+AGG	+	chr4_1:28112015-28112034	Msa0542750:intron	15.0%
!!	AAGAAATTATCCAATTTATA+GGG	+	chr4_1:28112016-28112035	Msa0542750:intron	15.0%
!!	ATAAGAAATTGCAAAAAAAT+TGG	+	chr4_1:28112068-28112087	Msa0542750:intron	15.0%
!!	AGAAATTATCCAATTTATAG+GGG	+	chr4_1:28112017-28112036	Msa0542750:intron	20.0%
!!	TTATATTAACCCCTATAAAT+TGG	-	chr4_1:28112029-28112048	None:intergenic	20.0%
!!	TTAAACAAACACAATATTAC+AGG	-	chr4_1:28112903-28112922	None:intergenic	20.0%
!!	AGAAATTATCCAATTTATAG+GGG	+	chr4_1:28112017-28112036	Msa0542750:intron	20.0%
!!	TTATATTAACCCCTATAAAT+TGG	-	chr4_1:28112029-28112048	None:intergenic	20.0%
!!	TTAAACAAACACAATATTAC+AGG	-	chr4_1:28112903-28112922	None:intergenic	20.0%
!!!	TATTTGATGGACTAAATTGA+CGG	-	chr4_1:28111287-28111306	None:intergenic	25.0%
!!!	TTTGAGTTCATTTTCAAAGA+AGG	-	chr4_1:28111508-28111527	None:intergenic	25.0%
!!!	CAATTTTTCAAACAGCTTAT+AGG	-	chr4_1:28111674-28111693	None:intergenic	25.0%
!!	AAAATTGTCTAAGTGTGTTT+TGG	+	chr4_1:28111687-28111706	Msa0542750:intron	25.0%
!!!	CTCAGGTTTTATAATAATTC+TGG	-	chr4_1:28111927-28111946	None:intergenic	25.0%
!	AAAATTTGCAACCCATTTAT+AGG	+	chr4_1:28111952-28111971	Msa0542750:intron	25.0%
!	AAATTTGCAACCCATTTATA+GGG	+	chr4_1:28111953-28111972	Msa0542750:intron	25.0%
!	TTATGTAAACCCCTATAAAT+GGG	-	chr4_1:28111966-28111985	None:intergenic	25.0%
!	AAATTGCAAAAAAATTGGAC+CGG	+	chr4_1:28112073-28112092	Msa0542750:intron	25.0%
!	CTAAACTATTGAAAGATAGT+AGG	-	chr4_1:28112218-28112237	None:intergenic	25.0%
!	ATACAAGCATTTCATTAGTT+GGG	-	chr4_1:28112480-28112499	None:intergenic	25.0%
!	ACAATATGGGTATGTAATAT+GGG	+	chr4_1:28112527-28112546	Msa0542750:intron	25.0%
!	AAATGCTTATAGAATGTACT+TGG	+	chr4_1:28112760-28112779	Msa0542750:CDS	25.0%
!!	CACTTTTATATACGTTATCA+TGG	+	chr4_1:28112817-28112836	Msa0542750:three_prime_UTR	25.0%
!	GTCAATTCAAAAAACAGATT+TGG	+	chr4_1:28112839-28112858	Msa0542750:three_prime_UTR	25.0%
!	TTAAGCACTAAAAACAAATC+TGG	+	chr4_1:28112919-28112938	Msa0542750:three_prime_UTR	25.0%
!!!	TATTTGATGGACTAAATTGA+CGG	-	chr4_1:28111287-28111306	None:intergenic	25.0%
!!!	TTTGAGTTCATTTTCAAAGA+AGG	-	chr4_1:28111508-28111527	None:intergenic	25.0%
!!!	CAATTTTTCAAACAGCTTAT+AGG	-	chr4_1:28111674-28111693	None:intergenic	25.0%
!!	AAAATTGTCTAAGTGTGTTT+TGG	+	chr4_1:28111687-28111706	Msa0542750:intron	25.0%
!!!	CTCAGGTTTTATAATAATTC+TGG	-	chr4_1:28111927-28111946	None:intergenic	25.0%
!	AAAATTTGCAACCCATTTAT+AGG	+	chr4_1:28111952-28111971	Msa0542750:intron	25.0%
!	AAATTTGCAACCCATTTATA+GGG	+	chr4_1:28111953-28111972	Msa0542750:intron	25.0%
!	TTATGTAAACCCCTATAAAT+GGG	-	chr4_1:28111966-28111985	None:intergenic	25.0%
!	AAATTGCAAAAAAATTGGAC+CGG	+	chr4_1:28112073-28112092	Msa0542750:intron	25.0%
!	CTAAACTATTGAAAGATAGT+AGG	-	chr4_1:28112218-28112237	None:intergenic	25.0%
!	ATACAAGCATTTCATTAGTT+GGG	-	chr4_1:28112480-28112499	None:intergenic	25.0%
!	ACAATATGGGTATGTAATAT+GGG	+	chr4_1:28112527-28112546	Msa0542750:intron	25.0%
!	AAATGCTTATAGAATGTACT+TGG	+	chr4_1:28112760-28112779	Msa0542750:CDS	25.0%
!!	CACTTTTATATACGTTATCA+TGG	+	chr4_1:28112817-28112836	Msa0542750:three_prime_UTR	25.0%
!	GTCAATTCAAAAAACAGATT+TGG	+	chr4_1:28112839-28112858	Msa0542750:three_prime_UTR	25.0%
!	TTAAGCACTAAAAACAAATC+TGG	+	chr4_1:28112919-28112938	Msa0542750:three_prime_UTR	25.0%
!	ATAGAAGCATACAATGAAGA+AGG	-	chr4_1:28111600-28111619	None:intergenic	30.0%
	CTTGAAAGCTTAAAAAAGAG+TGG	-	chr4_1:28111646-28111665	None:intergenic	30.0%
!!!	GTTGCAAATTTTTTTTGCTC+AGG	-	chr4_1:28111944-28111963	None:intergenic	30.0%
	AATTTGCAACCCATTTATAG+GGG	+	chr4_1:28111954-28111973	Msa0542750:intron	30.0%
	CTTATGTAAACCCCTATAAA+TGG	-	chr4_1:28111967-28111986	None:intergenic	30.0%
!!	ACTAAGTTGATGTATTAAGG+GGG	-	chr4_1:28112178-28112197	None:intergenic	30.0%
!!	GACTAAGTTGATGTATTAAG+GGG	-	chr4_1:28112179-28112198	None:intergenic	30.0%
!!	CGACTAAGTTGATGTATTAA+GGG	-	chr4_1:28112180-28112199	None:intergenic	30.0%
!!	ACGACTAAGTTGATGTATTA+AGG	-	chr4_1:28112181-28112200	None:intergenic	30.0%
	TAATACATCAACTTAGTCGT+TGG	+	chr4_1:28112181-28112200	Msa0542750:intron	30.0%
	CATACAAGCATTTCATTAGT+TGG	-	chr4_1:28112481-28112500	None:intergenic	30.0%
!	TTTGTTGGTTACTCACAATA+TGG	+	chr4_1:28112513-28112532	Msa0542750:intron	30.0%
!	TTGTTGGTTACTCACAATAT+GGG	+	chr4_1:28112514-28112533	Msa0542750:intron	30.0%
	CACAATATGGGTATGTAATA+TGG	+	chr4_1:28112526-28112545	Msa0542750:intron	30.0%
!	GTATGTAATATGGGATGTTT+TGG	+	chr4_1:28112536-28112555	Msa0542750:intron	30.0%
!	ATAGAAGCATACAATGAAGA+AGG	-	chr4_1:28111600-28111619	None:intergenic	30.0%
	CTTGAAAGCTTAAAAAAGAG+TGG	-	chr4_1:28111646-28111665	None:intergenic	30.0%
!!!	GTTGCAAATTTTTTTTGCTC+AGG	-	chr4_1:28111944-28111963	None:intergenic	30.0%
	AATTTGCAACCCATTTATAG+GGG	+	chr4_1:28111954-28111973	Msa0542750:intron	30.0%
	CTTATGTAAACCCCTATAAA+TGG	-	chr4_1:28111967-28111986	None:intergenic	30.0%
!!	ACTAAGTTGATGTATTAAGG+GGG	-	chr4_1:28112178-28112197	None:intergenic	30.0%
!!	GACTAAGTTGATGTATTAAG+GGG	-	chr4_1:28112179-28112198	None:intergenic	30.0%
!!	CGACTAAGTTGATGTATTAA+GGG	-	chr4_1:28112180-28112199	None:intergenic	30.0%
!!	ACGACTAAGTTGATGTATTA+AGG	-	chr4_1:28112181-28112200	None:intergenic	30.0%
	TAATACATCAACTTAGTCGT+TGG	+	chr4_1:28112181-28112200	Msa0542750:intron	30.0%
	CATACAAGCATTTCATTAGT+TGG	-	chr4_1:28112481-28112500	None:intergenic	30.0%
!	TTTGTTGGTTACTCACAATA+TGG	+	chr4_1:28112513-28112532	Msa0542750:intron	30.0%
!	TTGTTGGTTACTCACAATAT+GGG	+	chr4_1:28112514-28112533	Msa0542750:intron	30.0%
	CACAATATGGGTATGTAATA+TGG	+	chr4_1:28112526-28112545	Msa0542750:intron	30.0%
!	GTATGTAATATGGGATGTTT+TGG	+	chr4_1:28112536-28112555	Msa0542750:intron	30.0%
	TGCAACGGTGACAATATTTA+GGG	-	chr4_1:28111332-28111351	None:intergenic	35.0%
!	TTGATTCTGTTTCTCTGCAA+CGG	-	chr4_1:28111347-28111366	None:intergenic	35.0%
	TTAGAACTTGACAGAAACAG+TGG	+	chr4_1:28111417-28111436	Msa0542750:CDS	35.0%
	AGTGGAAGAGATAGTGAAAT+TGG	+	chr4_1:28111446-28111465	Msa0542750:CDS	35.0%
	GAACTCAAAAAGAAGAACAG+TGG	+	chr4_1:28111519-28111538	Msa0542750:CDS	35.0%
	CAGGTTATGTCATGTATTCT+TGG	+	chr4_1:28111574-28111593	Msa0542750:CDS	35.0%
	AGCTTAAAAAAGAGTGGAGT+TGG	-	chr4_1:28111640-28111659	None:intergenic	35.0%
!	TTTTGTAAGTGTGACTCTGT+TGG	+	chr4_1:28111836-28111855	Msa0542750:intron	35.0%
	TGATTTGAGCAAAAGGCTAA+AGG	-	chr4_1:28112145-28112164	None:intergenic	35.0%
!!	ACTCAACTGATTTGAGCAAA+AGG	-	chr4_1:28112152-28112171	None:intergenic	35.0%
	CAATGTCGATATAGTTAGGT+TGG	-	chr4_1:28112389-28112408	None:intergenic	35.0%
	CTGACAATGTCGATATAGTT+AGG	-	chr4_1:28112393-28112412	None:intergenic	35.0%
	CTATATCGACATTGTCAGTT+AGG	+	chr4_1:28112395-28112414	Msa0542750:intron	35.0%
!!	ATGCGAATCCTTTGATTTGT+TGG	+	chr4_1:28112498-28112517	Msa0542750:intron	35.0%
	GTGAGTAACCAACAAATCAA+AGG	-	chr4_1:28112509-28112528	None:intergenic	35.0%
!!!	TTTTGGTTCTTCTGTAGTGA+AGG	+	chr4_1:28112553-28112572	Msa0542750:intron	35.0%
	TGGACTTCGATTCAAATTGA+AGG	+	chr4_1:28112780-28112799	Msa0542750:CDS	35.0%
	GGAACATTGTGTTTGTAACA+TGG	+	chr4_1:28112860-28112879	Msa0542750:three_prime_UTR	35.0%
	TGCAACGGTGACAATATTTA+GGG	-	chr4_1:28111332-28111351	None:intergenic	35.0%
!	TTGATTCTGTTTCTCTGCAA+CGG	-	chr4_1:28111347-28111366	None:intergenic	35.0%
	TTAGAACTTGACAGAAACAG+TGG	+	chr4_1:28111417-28111436	Msa0542750:CDS	35.0%
	AGTGGAAGAGATAGTGAAAT+TGG	+	chr4_1:28111446-28111465	Msa0542750:CDS	35.0%
	GAACTCAAAAAGAAGAACAG+TGG	+	chr4_1:28111519-28111538	Msa0542750:CDS	35.0%
	CAGGTTATGTCATGTATTCT+TGG	+	chr4_1:28111574-28111593	Msa0542750:CDS	35.0%
	AGCTTAAAAAAGAGTGGAGT+TGG	-	chr4_1:28111640-28111659	None:intergenic	35.0%
!	TTTTGTAAGTGTGACTCTGT+TGG	+	chr4_1:28111836-28111855	Msa0542750:intron	35.0%
	TGATTTGAGCAAAAGGCTAA+AGG	-	chr4_1:28112145-28112164	None:intergenic	35.0%
!!	ACTCAACTGATTTGAGCAAA+AGG	-	chr4_1:28112152-28112171	None:intergenic	35.0%
	CAATGTCGATATAGTTAGGT+TGG	-	chr4_1:28112389-28112408	None:intergenic	35.0%
	CTGACAATGTCGATATAGTT+AGG	-	chr4_1:28112393-28112412	None:intergenic	35.0%
	CTATATCGACATTGTCAGTT+AGG	+	chr4_1:28112395-28112414	Msa0542750:intron	35.0%
!!	ATGCGAATCCTTTGATTTGT+TGG	+	chr4_1:28112498-28112517	Msa0542750:intron	35.0%
	GTGAGTAACCAACAAATCAA+AGG	-	chr4_1:28112509-28112528	None:intergenic	35.0%
!!!	TTTTGGTTCTTCTGTAGTGA+AGG	+	chr4_1:28112553-28112572	Msa0542750:intron	35.0%
	TGGACTTCGATTCAAATTGA+AGG	+	chr4_1:28112780-28112799	Msa0542750:CDS	35.0%
	GGAACATTGTGTTTGTAACA+TGG	+	chr4_1:28112860-28112879	Msa0542750:three_prime_UTR	35.0%
	CTGCAACGGTGACAATATTT+AGG	-	chr4_1:28111333-28111352	None:intergenic	40.0%
	CATGACATAACCTGCAAGTT+GGG	-	chr4_1:28111568-28111587	None:intergenic	40.0%
	ACATGACATAACCTGCAAGT+TGG	-	chr4_1:28111569-28111588	None:intergenic	40.0%
!	CTGTTGGTAAGCTTGGATAT+TGG	+	chr4_1:28111852-28111871	Msa0542750:intron	40.0%
	AAGCTTGGATATTGGTATGC+AGG	+	chr4_1:28111860-28111879	Msa0542750:intron	40.0%
	AGCTTGGATATTGGTATGCA+GGG	+	chr4_1:28111861-28111880	Msa0542750:intron	40.0%
	CTGTGTGTGTGAATTTCATG+TGG	-	chr4_1:28112332-28112351	None:intergenic	40.0%
	GCAGAACAAGAAAAGTTTCG+CGG	+	chr4_1:28112633-28112652	Msa0542750:CDS	40.0%
	CTGAATCTGTACAAGAAGCA+TGG	+	chr4_1:28112692-28112711	Msa0542750:CDS	40.0%
!	TGGCTTTCATGTTGACTGTT+TGG	+	chr4_1:28112712-28112731	Msa0542750:CDS	40.0%
	GGAACATTGTGTTTGTGACA+TGG	+	chr4_1:28112940-28112959	Msa0542750:three_prime_UTR	40.0%
	CTGCAACGGTGACAATATTT+AGG	-	chr4_1:28111333-28111352	None:intergenic	40.0%
	CATGACATAACCTGCAAGTT+GGG	-	chr4_1:28111568-28111587	None:intergenic	40.0%
	ACATGACATAACCTGCAAGT+TGG	-	chr4_1:28111569-28111588	None:intergenic	40.0%
!	CTGTTGGTAAGCTTGGATAT+TGG	+	chr4_1:28111852-28111871	Msa0542750:intron	40.0%
	AAGCTTGGATATTGGTATGC+AGG	+	chr4_1:28111860-28111879	Msa0542750:intron	40.0%
	AGCTTGGATATTGGTATGCA+GGG	+	chr4_1:28111861-28111880	Msa0542750:intron	40.0%
	CTGTGTGTGTGAATTTCATG+TGG	-	chr4_1:28112332-28112351	None:intergenic	40.0%
	GCAGAACAAGAAAAGTTTCG+CGG	+	chr4_1:28112633-28112652	Msa0542750:CDS	40.0%
	CTGAATCTGTACAAGAAGCA+TGG	+	chr4_1:28112692-28112711	Msa0542750:CDS	40.0%
!	TGGCTTTCATGTTGACTGTT+TGG	+	chr4_1:28112712-28112731	Msa0542750:CDS	40.0%
	GGAACATTGTGTTTGTGACA+TGG	+	chr4_1:28112940-28112959	Msa0542750:three_prime_UTR	40.0%
	CAGAAACAGTGGTAAAGCAG+TGG	+	chr4_1:28111428-28111447	Msa0542750:CDS	45.0%
	GAAGCGAGTGATTCGTGTTT+GGG	-	chr4_1:28111486-28111505	None:intergenic	45.0%
!	TGTGACTCTGTTGGTAAGCT+TGG	+	chr4_1:28111845-28111864	Msa0542750:intron	45.0%
	GGATATTGGTATGCAGGGTT+CGG	+	chr4_1:28111866-28111885	Msa0542750:intron	45.0%
	GATATTGGTATGCAGGGTTC+GGG	+	chr4_1:28111867-28111886	Msa0542750:intron	45.0%
	TGAGCAAAAGGCTAAAGGCA+GGG	-	chr4_1:28112140-28112159	None:intergenic	45.0%
	TTGAGCAAAAGGCTAAAGGC+AGG	-	chr4_1:28112141-28112160	None:intergenic	45.0%
	AATTCACACACACAGCTGCA+AGG	+	chr4_1:28112337-28112356	Msa0542750:intron	45.0%
	CTTCTGTAGTGAAGGAGCAA+TGG	+	chr4_1:28112561-28112580	Msa0542750:intron	45.0%
	TGGAGAGGTTCTACTGAAAG+CGG	+	chr4_1:28112598-28112617	Msa0542750:CDS	45.0%
	TTCTTGTACAGATTCAGCGC+AGG	-	chr4_1:28112689-28112708	None:intergenic	45.0%
!	CATGTTGACTGTTTGGTCGT+AGG	+	chr4_1:28112719-28112738	Msa0542750:CDS	45.0%
	CAGAAACAGTGGTAAAGCAG+TGG	+	chr4_1:28111428-28111447	Msa0542750:CDS	45.0%
	GAAGCGAGTGATTCGTGTTT+GGG	-	chr4_1:28111486-28111505	None:intergenic	45.0%
!	TGTGACTCTGTTGGTAAGCT+TGG	+	chr4_1:28111845-28111864	Msa0542750:intron	45.0%
	GGATATTGGTATGCAGGGTT+CGG	+	chr4_1:28111866-28111885	Msa0542750:intron	45.0%
	GATATTGGTATGCAGGGTTC+GGG	+	chr4_1:28111867-28111886	Msa0542750:intron	45.0%
	TGAGCAAAAGGCTAAAGGCA+GGG	-	chr4_1:28112140-28112159	None:intergenic	45.0%
	TTGAGCAAAAGGCTAAAGGC+AGG	-	chr4_1:28112141-28112160	None:intergenic	45.0%
	AATTCACACACACAGCTGCA+AGG	+	chr4_1:28112337-28112356	Msa0542750:intron	45.0%
	CTTCTGTAGTGAAGGAGCAA+TGG	+	chr4_1:28112561-28112580	Msa0542750:intron	45.0%
	TGGAGAGGTTCTACTGAAAG+CGG	+	chr4_1:28112598-28112617	Msa0542750:CDS	45.0%
	TTCTTGTACAGATTCAGCGC+AGG	-	chr4_1:28112689-28112708	None:intergenic	45.0%
!	CATGTTGACTGTTTGGTCGT+AGG	+	chr4_1:28112719-28112738	Msa0542750:CDS	45.0%
	GGAAGCGAGTGATTCGTGTT+TGG	-	chr4_1:28111487-28111506	None:intergenic	50.0%
	GGTTCGAACCATTTAGCCAG+TGG	+	chr4_1:28111896-28111915	Msa0542750:intron	50.0%
	TCGAACCATTTAGCCAGTGG+CGG	+	chr4_1:28111899-28111918	Msa0542750:intron	50.0%
!!	AATAATTCTGGCTCCGCCAC+TGG	-	chr4_1:28111915-28111934	None:intergenic	50.0%
	AAAAAATTGGACCGGAGCCC+AGG	+	chr4_1:28112081-28112100	Msa0542750:intron	50.0%
!	TAAAGGCAGGGGTGGTTCTA+AGG	-	chr4_1:28112128-28112147	None:intergenic	50.0%
	GAGCAAAAGGCTAAAGGCAG+GGG	-	chr4_1:28112139-28112158	None:intergenic	50.0%
	ACACACAGCTGCAAGGTCTT+GGG	+	chr4_1:28112344-28112363	Msa0542750:intron	50.0%
	CTGTAGTGAAGGAGCAATGG+AGG	+	chr4_1:28112564-28112583	Msa0542750:intron	50.0%
	TAGTGAAGGAGCAATGGAGG+AGG	+	chr4_1:28112567-28112586	Msa0542750:intron	50.0%
	GGAAGCGAGTGATTCGTGTT+TGG	-	chr4_1:28111487-28111506	None:intergenic	50.0%
	GGTTCGAACCATTTAGCCAG+TGG	+	chr4_1:28111896-28111915	Msa0542750:intron	50.0%
	TCGAACCATTTAGCCAGTGG+CGG	+	chr4_1:28111899-28111918	Msa0542750:intron	50.0%
!!	AATAATTCTGGCTCCGCCAC+TGG	-	chr4_1:28111915-28111934	None:intergenic	50.0%
	AAAAAATTGGACCGGAGCCC+AGG	+	chr4_1:28112081-28112100	Msa0542750:intron	50.0%
!	TAAAGGCAGGGGTGGTTCTA+AGG	-	chr4_1:28112128-28112147	None:intergenic	50.0%
	GAGCAAAAGGCTAAAGGCAG+GGG	-	chr4_1:28112139-28112158	None:intergenic	50.0%
	ACACACAGCTGCAAGGTCTT+GGG	+	chr4_1:28112344-28112363	Msa0542750:intron	50.0%
	CTGTAGTGAAGGAGCAATGG+AGG	+	chr4_1:28112564-28112583	Msa0542750:intron	50.0%
	TAGTGAAGGAGCAATGGAGG+AGG	+	chr4_1:28112567-28112586	Msa0542750:intron	50.0%
	GCTTACTCACGCACGAGTGA+TGG	+	chr4_1:28111380-28111399	Msa0542750:exon	55.0%
	CGCACGAGTGATGGCAAATG+TGG	+	chr4_1:28111389-28111408	Msa0542750:exon	55.0%
	CACGTTGATGCCCAACTTGC+AGG	+	chr4_1:28111555-28111574	Msa0542750:CDS	55.0%
	GCTTCTATCACCAAGCTCGC+AGG	+	chr4_1:28111612-28111631	Msa0542750:CDS	55.0%
	GGTATGCAGGGTTCGGGATT+CGG	+	chr4_1:28111873-28111892	Msa0542750:intron	55.0%
	GTATGCAGGGTTCGGGATTC+GGG	+	chr4_1:28111874-28111893	Msa0542750:intron	55.0%
	TATGCAGGGTTCGGGATTCG+GGG	+	chr4_1:28111875-28111894	Msa0542750:intron	55.0%
	CAAAAGGCTAAAGGCAGGGG+TGG	-	chr4_1:28112136-28112155	None:intergenic	55.0%
	CACACACAGCTGCAAGGTCT+TGG	+	chr4_1:28112343-28112362	Msa0542750:intron	55.0%
	AAGGAGCAATGGAGGAGGCA+AGG	+	chr4_1:28112572-28112591	Msa0542750:CDS	55.0%
	CAATGGAGGAGGCAAGGACA+TGG	+	chr4_1:28112578-28112597	Msa0542750:CDS	55.0%
	TGCTTCACGTCGATCCGTTG+AGG	+	chr4_1:28112660-28112679	Msa0542750:CDS	55.0%
	TTCAGCGCAGGTGTCCTCAA+CGG	-	chr4_1:28112677-28112696	None:intergenic	55.0%
	GCTTACTCACGCACGAGTGA+TGG	+	chr4_1:28111380-28111399	Msa0542750:exon	55.0%
	CGCACGAGTGATGGCAAATG+TGG	+	chr4_1:28111389-28111408	Msa0542750:exon	55.0%
	CACGTTGATGCCCAACTTGC+AGG	+	chr4_1:28111555-28111574	Msa0542750:CDS	55.0%
	GCTTCTATCACCAAGCTCGC+AGG	+	chr4_1:28111612-28111631	Msa0542750:CDS	55.0%
	GGTATGCAGGGTTCGGGATT+CGG	+	chr4_1:28111873-28111892	Msa0542750:intron	55.0%
	GTATGCAGGGTTCGGGATTC+GGG	+	chr4_1:28111874-28111893	Msa0542750:intron	55.0%
	TATGCAGGGTTCGGGATTCG+GGG	+	chr4_1:28111875-28111894	Msa0542750:intron	55.0%
	CAAAAGGCTAAAGGCAGGGG+TGG	-	chr4_1:28112136-28112155	None:intergenic	55.0%
	CACACACAGCTGCAAGGTCT+TGG	+	chr4_1:28112343-28112362	Msa0542750:intron	55.0%
	AAGGAGCAATGGAGGAGGCA+AGG	+	chr4_1:28112572-28112591	Msa0542750:CDS	55.0%
	CAATGGAGGAGGCAAGGACA+TGG	+	chr4_1:28112578-28112597	Msa0542750:CDS	55.0%
	TGCTTCACGTCGATCCGTTG+AGG	+	chr4_1:28112660-28112679	Msa0542750:CDS	55.0%
	TTCAGCGCAGGTGTCCTCAA+CGG	-	chr4_1:28112677-28112696	None:intergenic	55.0%
	GGAGTTGGAACCTGCGAGCT+TGG	-	chr4_1:28111625-28111644	None:intergenic	60.0%
!	TGGCTCCGCCACTGGCTAAA+TGG	-	chr4_1:28111907-28111926	None:intergenic	60.0%
	GAGGAGGCAAGGACATGGAG+AGG	+	chr4_1:28112583-28112602	Msa0542750:CDS	60.0%
	GGAGTTGGAACCTGCGAGCT+TGG	-	chr4_1:28111625-28111644	None:intergenic	60.0%
!	TGGCTCCGCCACTGGCTAAA+TGG	-	chr4_1:28111907-28111926	None:intergenic	60.0%
	GAGGAGGCAAGGACATGGAG+AGG	+	chr4_1:28112583-28112602	Msa0542750:CDS	60.0%
!!	TTCTAAGGCCCGGCGAGCCT+GGG	-	chr4_1:28112113-28112132	None:intergenic	65.0%
!!	GCAGGGGTGGTTCTAAGGCC+CGG	-	chr4_1:28112123-28112142	None:intergenic	65.0%
!!	TTCTAAGGCCCGGCGAGCCT+GGG	-	chr4_1:28112113-28112132	None:intergenic	65.0%
!!	GCAGGGGTGGTTCTAAGGCC+CGG	-	chr4_1:28112123-28112142	None:intergenic	65.0%
	CTGGGCAGTTGCCTGGGCTC+CGG	-	chr4_1:28112095-28112114	None:intergenic	70.0%
	GCGAGCCTGGGCAGTTGCCT+GGG	-	chr4_1:28112101-28112120	None:intergenic	70.0%
	AGGCAACTGCCCAGGCTCGC+CGG	+	chr4_1:28112101-28112120	Msa0542750:intron	70.0%
!!	GTTCTAAGGCCCGGCGAGCC+TGG	-	chr4_1:28112114-28112133	None:intergenic	70.0%
	CTGGGCAGTTGCCTGGGCTC+CGG	-	chr4_1:28112095-28112114	None:intergenic	70.0%
	GCGAGCCTGGGCAGTTGCCT+GGG	-	chr4_1:28112101-28112120	None:intergenic	70.0%
	AGGCAACTGCCCAGGCTCGC+CGG	+	chr4_1:28112101-28112120	Msa0542750:intron	70.0%
!!	GTTCTAAGGCCCGGCGAGCC+TGG	-	chr4_1:28112114-28112133	None:intergenic	70.0%
	CGGAGCCCAGGCAACTGCCC+AGG	+	chr4_1:28112093-28112112	Msa0542750:intron	75.0%
	GGCGAGCCTGGGCAGTTGCC+TGG	-	chr4_1:28112102-28112121	None:intergenic	75.0%
	GGCAACTGCCCAGGCTCGCC+GGG	+	chr4_1:28112102-28112121	Msa0542750:intron	75.0%
	CGGAGCCCAGGCAACTGCCC+AGG	+	chr4_1:28112093-28112112	Msa0542750:intron	75.0%
	GGCGAGCCTGGGCAGTTGCC+TGG	-	chr4_1:28112102-28112121	None:intergenic	75.0%
	GGCAACTGCCCAGGCTCGCC+GGG	+	chr4_1:28112102-28112121	Msa0542750:intron	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	28111269	28112983	28111269	ID=Msa0542750;Name=Msa0542750
chr4_1	mRNA	28111269	28112983	28111269	ID=Msa0542750-mRNA-1;Parent=Msa0542750;Name=Msa0542750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130\|1\|1\|1\|1\|1\|2\|184\|154
chr4_1	exon	28111269	28111633	28111269	ID=Msa0542750-mRNA-1:exon:7611;Parent=Msa0542750-mRNA-1
chr4_1	exon	28112570	28112983	28112570	ID=Msa0542750-mRNA-1:exon:7612;Parent=Msa0542750-mRNA-1
chr4_1	five_prime_UTR	28111269	28111398	28111269	ID=Msa0542750-mRNA-1:five_prime_utr;Parent=Msa0542750-mRNA-1
chr4_1	CDS	28111399	28111633	28111399	ID=Msa0542750-mRNA-1:cds;Parent=Msa0542750-mRNA-1
chr4_1	CDS	28112570	28112799	28112570	ID=Msa0542750-mRNA-1:cds;Parent=Msa0542750-mRNA-1
chr4_1	three_prime_UTR	28112800	28112983	28112800	ID=Msa0542750-mRNA-1:three_prime_utr;Parent=Msa0542750-mRNA-1

Gene Sequence

>Msa0542750

ATGGCAAATGTGGAGATTTTAGAACTTGACAGAAACAGTGGTAAAGCAGTGGAAGAGATAGTGAAATTGGAGAGAAAGATATTTCCCAAACACGAATCACTCGCTTCCTTCTTTGAAAATGAACTCAAAAAGAAGAACAGTGGATTGCTTTATCTTCACGTTGATGCCCAACTTGCAGGTTATGTCATGTATTCTTGGCCTTCTTCATTGTATGCTTCTATCACCAAGCTCGCAGTGAAGGAGCAATGGAGGAGGCAAGGACATGGAGAGGTTCTACTGAAAGCGGCAATCGAGAAATGCAGAACAAGAAAAGTTTCGCGGATAATGCTTCACGTCGATCCGTTGAGGACACCTGCGCTGAATCTGTACAAGAAGCATGGCTTTCATGTTGACTGTTTGGTCGTAGGCTATTACTCTTCTGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAATTGA

Protein sequence

>Msa0542750

MANVEILELDRNSGKAVEEIVKLERKIFPKHESLASFFENELKKKNSGLLYLHVDAQLAGYVMYSWPSSLYASITKLAVKEQWRRQGHGEVLLKAAIEKCRTRKVSRIMLHVDPLRTPALNLYKKHGFHVDCLVVGYYSSDRNAYRMYLDFDSN*