Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684390 | XP_013456167.1 | 91.512 | 377 | 28 | 2 | 1 | 373 | 1 | 377 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684390 | A0A072UM83 | 91.512 | 377 | 28 | 2 | 1 | 373 | 1 | 377 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028410 | Msa0684390 | -0.802205 | 6.265966e-49 | -8.615850e-47 |
| Msa0030710 | Msa0684390 | -0.816450 | 5.496213e-52 | -8.615850e-47 |
| Msa0038860 | Msa0684390 | -0.819764 | 9.784512e-53 | -8.615850e-47 |
| Msa0078110 | Msa0684390 | -0.815098 | 1.100225e-51 | -8.615850e-47 |
| Msa0080100 | Msa0684390 | -0.800041 | 1.735584e-48 | -8.615850e-47 |
| Msa0102290 | Msa0684390 | -0.804578 | 2.019747e-49 | -8.615850e-47 |
| Msa0616570 | Msa0684390 | -0.800361 | 1.494209e-48 | -8.615850e-47 |
| Msa0617010 | Msa0684390 | -0.804391 | 2.209590e-49 | -8.615850e-47 |
| Msa0622800 | Msa0684390 | -0.811946 | 5.428446e-51 | -8.615850e-47 |
| Msa0661050 | Msa0684390 | 0.893179 | 7.995882e-75 | -8.615850e-47 |
| Msa0684390 | Msa0694810 | -0.808439 | 3.095371e-50 | -8.615850e-47 |
| Msa0684390 | Msa0699200 | -0.802295 | 6.002918e-49 | -8.615850e-47 |
| Msa0684390 | Msa0701490 | 0.804338 | 2.265982e-49 | -8.615850e-47 |
| Msa0684390 | Msa0701560 | 0.807978 | 3.880893e-50 | -8.615850e-47 |
| Msa0684390 | Msa0742690 | -0.805935 | 1.049610e-49 | -8.615850e-47 |
| Msa0684390 | Msa0766910 | -0.801852 | 7.404258e-49 | -8.615850e-47 |
| Msa0684390 | Msa0799150 | -0.803888 | 2.811964e-49 | -8.615850e-47 |
| Msa0684390 | Msa0807840 | -0.808937 | 2.422541e-50 | -8.615850e-47 |
| Msa0684390 | Msa0827560 | -0.810175 | 1.313746e-50 | -8.615850e-47 |
| Msa0684390 | Msa0833980 | -0.809678 | 1.680049e-50 | -8.615850e-47 |
| Msa0684390 | Msa0862750 | -0.811209 | 7.851097e-51 | -8.615850e-47 |
| Msa0684390 | Msa0940400 | -0.804918 | 1.715395e-49 | -8.615850e-47 |
| Msa0684390 | Msa0971100 | -0.801336 | 9.448642e-49 | -8.615850e-47 |
| Msa0684390 | Msa1020490 | -0.803040 | 4.214520e-49 | -8.615850e-47 |
| Msa0684390 | Msa1036370 | -0.803512 | 3.364811e-49 | -8.615850e-47 |
| Msa0684390 | Msa1051410 | -0.828484 | 8.761061e-55 | -8.615850e-47 |
| Msa0684390 | Msa1084630 | -0.802036 | 6.786503e-49 | -8.615850e-47 |
| Msa0684390 | Msa1208840 | 0.812394 | 4.334802e-51 | -8.615850e-47 |
| Msa0684390 | Msa1211930 | -0.806311 | 8.750401e-50 | -8.615850e-47 |
| Msa0684390 | Msa1225280 | -0.809392 | 1.936028e-50 | -8.615850e-47 |
| Msa0684390 | Msa1292700 | -0.822701 | 2.057310e-53 | -8.615850e-47 |
| Msa0684390 | Msa1334690 | -0.806420 | 8.297199e-50 | -8.615850e-47 |
| Msa0684390 | Msa1386820 | -0.811073 | 8.402729e-51 | -8.615850e-47 |
| Msa0684390 | Msa1388010 | -0.802182 | 6.333630e-49 | -8.615850e-47 |
| Msa0684390 | Msa1400330 | -0.805940 | 1.047433e-49 | -8.615850e-47 |
| Msa0684390 | Msa1405040 | -0.805726 | 1.161306e-49 | -8.615850e-47 |
| Msa0684390 | Msa1419200 | 0.805659 | 1.199431e-49 | -8.615850e-47 |
| Msa0684390 | Msa1448410 | -0.824420 | 8.149007e-54 | -8.615850e-47 |
| Msa0131230 | Msa0684390 | -0.800891 | 1.164894e-48 | -8.615850e-47 |
| Msa0143830 | Msa0684390 | 0.802211 | 6.247297e-49 | -8.615850e-47 |
| Msa0147070 | Msa0684390 | -0.804158 | 2.470458e-49 | -8.615850e-47 |
| Msa0181740 | Msa0684390 | -0.822912 | 1.838038e-53 | -8.615850e-47 |
| Msa0186750 | Msa0684390 | -0.806059 | 9.883954e-50 | -8.615850e-47 |
| Msa0228360 | Msa0684390 | -0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0231180 | Msa0684390 | -0.816961 | 4.222372e-52 | -8.615850e-47 |
| Msa0474290 | Msa0684390 | -0.802355 | 5.835908e-49 | -8.615850e-47 |
| Msa0261020 | Msa0684390 | -0.829046 | 6.408427e-55 | -8.615850e-47 |
| Msa0336550 | Msa0684390 | -0.810504 | 1.115377e-50 | -8.615850e-47 |
| Msa0483410 | Msa0684390 | -0.805998 | 1.018087e-49 | -8.615850e-47 |
| Msa0518720 | Msa0684390 | -0.804433 | 2.165336e-49 | -8.615850e-47 |
| Msa0562040 | Msa0684390 | -0.806369 | 8.505982e-50 | -8.615850e-47 |
| Msa0565120 | Msa0684390 | 0.812350 | 4.431970e-51 | -8.615850e-47 |
| Msa0574230 | Msa0684390 | -0.802445 | 5.592694e-49 | -8.615850e-47 |
| Msa0577350 | Msa0684390 | -0.808604 | 2.854168e-50 | -8.615850e-47 |
| Msa0577920 | Msa0684390 | -0.815961 | 7.070210e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684390 | MtrunA17_Chr4g0032271 | 91.512 | 377 | 28 | 2 | 1 | 373 | 1 | 377 | 0.0 | 707 |
| Msa0684390 | MtrunA17_Chr2g0328681 | 40.672 | 268 | 131 | 8 | 114 | 373 | 74 | 321 | 1.34e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684390 | AT5G59050.1 | 27.945 | 365 | 192 | 13 | 25 | 373 | 3 | 312 | 8.32e-12 | 65.9 |
Find 124 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTGATTTCTCCTGATTT+TGG | 0.136220 | 4_4:+47738411 | Msa0684390:CDS |
| TTACTTTATTCTGCTTTAAT+TGG | 0.215865 | 4_4:-47742237 | None:intergenic |
| AAAGAAGATGAAGTTAGATT+TGG | 0.272712 | 4_4:+47739263 | Msa0684390:CDS |
| CAAATTGATTGCAGATGTTT+TGG | 0.292136 | 4_4:+47742015 | Msa0684390:intron |
| GGAGAAGCAGACAGATTTCC+AGG | 0.297287 | 4_4:+47739334 | Msa0684390:CDS |
| TTATGTGTAGGGAAATCTTT+TGG | 0.299941 | 4_4:+47742307 | Msa0684390:three_prime_UTR |
| GTCACCTTTATGCTCAAATC+AGG | 0.304589 | 4_4:+47738721 | Msa0684390:CDS |
| GCTGGTCTCAATCATCTCTT+TGG | 0.335355 | 4_4:+47738699 | Msa0684390:CDS |
| ATGAATGGTAATGATGAAAT+AGG | 0.337783 | 4_4:-47738245 | None:intergenic |
| GACCAAATTGCTGCCACCTC+TGG | 0.353892 | 4_4:+47740736 | Msa0684390:CDS |
| TGCACAAATTCGAGCTAATC+AGG | 0.362632 | 4_4:+47738946 | Msa0684390:CDS |
| AAGAAGATGAAGTTAGATTT+GGG | 0.364721 | 4_4:+47739264 | Msa0684390:CDS |
| CAATGGACTCGATGAGTTGC+TGG | 0.370374 | 4_4:+47738681 | Msa0684390:CDS |
| CCAGGCTCAGATGGTTCCTT+AGG | 0.377742 | 4_4:-47738767 | None:intergenic |
| CCATTCATTCTTATTTATCA+TGG | 0.378092 | 4_4:+47738260 | Msa0684390:exon |
| TCAGAATCATAGCTGTTTCC+AGG | 0.384732 | 4_4:-47738785 | None:intergenic |
| TACCATTCTTCTGAAATTGT+GGG | 0.391137 | 4_4:-47739241 | None:intergenic |
| ACCCCACAATTTCAGAAGAA+TGG | 0.395894 | 4_4:+47739239 | Msa0684390:CDS |
| TTACCATTCTTCTGAAATTG+TGG | 0.396598 | 4_4:-47739242 | None:intergenic |
| TCTCCATCTCCGAGCTTTGA+TGG | 0.398908 | 4_4:-47738871 | None:intergenic |
| TTTGTGCATTAAGTAGATAT+TGG | 0.404783 | 4_4:-47738931 | None:intergenic |
| TGCTTCACTTCTGCTTCAAT+AGG | 0.405009 | 4_4:-47742137 | None:intergenic |
| TCTGAAATTGTGGGGTCAAA+TGG | 0.415449 | 4_4:-47739232 | None:intergenic |
| GAGTGAGTTAAGTCCGTTGA+TGG | 0.417707 | 4_4:-47738348 | None:intergenic |
| GGTAATGATGAAATAGGTTA+AGG | 0.425744 | 4_4:-47738239 | None:intergenic |
| ACATCTCAATCCCATGTTGC+TGG | 0.426096 | 4_4:+47738893 | Msa0684390:CDS |
| ACCGTTGATGATGAATTTGT+TGG | 0.426835 | 4_4:-47738370 | None:intergenic |
| ACAGATTTCCAGGGAGCAAC+CGG | 0.428575 | 4_4:+47739344 | Msa0684390:CDS |
| GTCCAGAGGTGGCAGCAATT+TGG | 0.430248 | 4_4:-47740738 | None:intergenic |
| TATGTATGAGATCCAAAATC+AGG | 0.430550 | 4_4:-47738423 | None:intergenic |
| GGAGGGAAGACACGAGGCTT+AGG | 0.436010 | 4_4:-47740760 | None:intergenic |
| CTCCCCTGATTTGAGCATAA+AGG | 0.438351 | 4_4:-47738725 | None:intergenic |
| TATGCACCAGCAGGCAGGTT+CGG | 0.449566 | 4_4:+47739313 | Msa0684390:CDS |
| TCCCTACACATAAATCCAAT+CGG | 0.456604 | 4_4:-47742297 | None:intergenic |
| CCCGATTGGATTTATGTGTA+GGG | 0.463451 | 4_4:+47742296 | Msa0684390:three_prime_UTR |
| GCTTCTCCGAACCTGCCTGC+TGG | 0.466137 | 4_4:-47739319 | None:intergenic |
| TGAAGGCTCTTTGTCTCCTA+AGG | 0.467780 | 4_4:+47738751 | Msa0684390:CDS |
| ATGGCACCTTTGCAACGGCC+TGG | 0.468622 | 4_4:+47739287 | Msa0684390:CDS |
| CTCTTGAACCGGTTGCTCCC+TGG | 0.471523 | 4_4:-47739352 | None:intergenic |
| ACATGATGTGCCTCTTGAAC+CGG | 0.474939 | 4_4:-47739363 | None:intergenic |
| GAACCATATGCATATGTTGT+TGG | 0.476980 | 4_4:-47738521 | None:intergenic |
| TAGTACCGATTGGCAATCTT+CGG | 0.478572 | 4_4:-47738565 | None:intergenic |
| TGTTCTGTATGATCCATCCT+TGG | 0.484104 | 4_4:-47742439 | None:intergenic |
| ATGATGAAATAGGTTAAGGT+AGG | 0.485798 | 4_4:-47738235 | None:intergenic |
| CAAAGCTTGTACTACTCTCT+CGG | 0.486527 | 4_4:-47740701 | None:intergenic |
| TTGCGGCTGTTGTGCCTCGA+TGG | 0.490806 | 4_4:-47738466 | None:intergenic |
| GGTCCTATGCACCAGCAGGC+AGG | 0.498891 | 4_4:+47739308 | Msa0684390:CDS |
| CGTGTCTTCCCTCCCCTGCA+TGG | 0.504131 | 4_4:+47740769 | Msa0684390:CDS |
| TACCCAACAACATATGCATA+TGG | 0.507804 | 4_4:+47738518 | Msa0684390:CDS |
| AGATCGTCTTCTTTCTCTTG+CGG | 0.509918 | 4_4:-47738483 | None:intergenic |
| GCCTGCTGGTGCATAGGACC+AGG | 0.510548 | 4_4:-47739305 | None:intergenic |
| ATAAAGTAATAAAGAAAAGC+TGG | 0.512651 | 4_4:+47742251 | Msa0684390:three_prime_UTR |
| GAACCTGCCTGCTGGTGCAT+AGG | 0.513798 | 4_4:-47739311 | None:intergenic |
| ATACCATCAAAGCTCGGAGA+TGG | 0.518569 | 4_4:+47738868 | Msa0684390:CDS |
| CCATGATAAATAAGAATGAA+TGG | 0.521267 | 4_4:-47738260 | None:intergenic |
| GCCTGGTCCTATGCACCAGC+AGG | 0.522734 | 4_4:+47739304 | Msa0684390:CDS |
| CCCTACACATAAATCCAATC+GGG | 0.522812 | 4_4:-47742296 | None:intergenic |
| CCTAAGGAACCATCTGAGCC+TGG | 0.524665 | 4_4:+47738767 | Msa0684390:CDS |
| TTCGTTACTCCCGCCATCAA+CGG | 0.526959 | 4_4:+47738335 | Msa0684390:CDS |
| CCGTGATTGACGCTTCTGTA+GGG | 0.527468 | 4_4:-47742065 | None:intergenic |
| TCCGTGATTGACGCTTCTGT+AGG | 0.530189 | 4_4:-47742066 | None:intergenic |
| AACCATATGCATATGTTGTT+GGG | 0.531929 | 4_4:-47738520 | None:intergenic |
| TCCCGATTGGATTTATGTGT+AGG | 0.533535 | 4_4:+47742295 | Msa0684390:three_prime_UTR |
| GAGTTAAGTCCGTTGATGGC+GGG | 0.534465 | 4_4:-47738344 | None:intergenic |
| CAGCAACTCATCGAGTCCAT+TGG | 0.537575 | 4_4:-47738680 | None:intergenic |
| TAAAGAAAAGCTGGTTGAAG+AGG | 0.538106 | 4_4:+47742260 | Msa0684390:three_prime_UTR |
| AGAGGCACATCATGTGGGAC+AGG | 0.544872 | 4_4:+47739371 | Msa0684390:CDS |
| ACTATAAGAAGGTACCATGC+AGG | 0.546536 | 4_4:-47740783 | None:intergenic |
| CTTCTATCAGTTGAAGCCAA+TGG | 0.547789 | 4_4:+47738664 | Msa0684390:intron |
| TCAAATCAGGGGAGTTCTGA+AGG | 0.549302 | 4_4:+47738734 | Msa0684390:CDS |
| GTTGACCTACACACTGGTAA+TGG | 0.553735 | 4_4:+47738285 | Msa0684390:CDS |
| TCACCTTTATGCTCAAATCA+GGG | 0.553865 | 4_4:+47738722 | Msa0684390:CDS |
| GGCGGGAGTAACGAATCATA+AGG | 0.556543 | 4_4:-47738327 | None:intergenic |
| AGATGATTCTGCCTCGAGAG+TGG | 0.556795 | 4_4:+47742113 | Msa0684390:CDS |
| TACACACTGGTAATGGCAGT+GGG | 0.559048 | 4_4:+47738292 | Msa0684390:CDS |
| TCCTTCCGAAGATTGCCAAT+CGG | 0.560004 | 4_4:+47738560 | Msa0684390:CDS |
| AGAAGGTACCATGCAGGGGA+GGG | 0.560754 | 4_4:-47740777 | None:intergenic |
| CTATAAGAAGGTACCATGCA+GGG | 0.563928 | 4_4:-47740782 | None:intergenic |
| GAATAAATAAAATTCCCGAT+TGG | 0.565526 | 4_4:+47742282 | Msa0684390:three_prime_UTR |
| TTGGGATGGCACCTTTGCAA+CGG | 0.566146 | 4_4:+47739282 | Msa0684390:CDS |
| ACCATTCTTCTGAAATTGTG+GGG | 0.568396 | 4_4:-47739240 | None:intergenic |
| AAAGCTTGTACTACTCTCTC+GGG | 0.568645 | 4_4:-47740700 | None:intergenic |
| TATTAGTACTTTGATGATGT+GGG | 0.570746 | 4_4:-47738196 | None:intergenic |
| TGTAAGAGGCGATCCAAGGA+TGG | 0.571449 | 4_4:+47742426 | Msa0684390:three_prime_UTR |
| CAGGGAGCAACCGGTTCAAG+AGG | 0.574297 | 4_4:+47739353 | Msa0684390:CDS |
| GGTTCAAGAGGCACATCATG+TGG | 0.575438 | 4_4:+47739365 | Msa0684390:CDS |
| AGATGAAGTTAGATTTGGGA+TGG | 0.578501 | 4_4:+47739268 | Msa0684390:CDS |
| ATAGGACCAGGCCGTTGCAA+AGG | 0.579992 | 4_4:-47739293 | None:intergenic |
| TTCTAAATACCATCAAAGCT+CGG | 0.580519 | 4_4:+47738862 | Msa0684390:CDS |
| TTTGTGTAAGAGGCGATCCA+AGG | 0.581203 | 4_4:+47742422 | Msa0684390:three_prime_UTR |
| AATAGGTTAAGGTAGGGAGA+AGG | 0.582166 | 4_4:-47738228 | None:intergenic |
| GATTCATGTTAGTACTTGTG+TGG | 0.585113 | 4_4:+47742208 | Msa0684390:three_prime_UTR |
| AAGAAGGTACCATGCAGGGG+AGG | 0.586164 | 4_4:-47740778 | None:intergenic |
| TCCAACAAATTCATCATCAA+CGG | 0.587485 | 4_4:+47738369 | Msa0684390:CDS |
| TTGGTGAGTACTAATAGGGA+TGG | 0.591514 | 4_4:+47742034 | Msa0684390:CDS |
| TAGCTGTTTCCAGGCTCAGA+TGG | 0.592467 | 4_4:-47738776 | None:intergenic |
| TGGCAGCAATTTGGTCAAAG+TGG | 0.593547 | 4_4:-47740729 | None:intergenic |
| CTACACACTGGTAATGGCAG+TGG | 0.593741 | 4_4:+47738291 | Msa0684390:CDS |
| ATGAACAAACTCCAGCAACA+TGG | 0.595864 | 4_4:-47738904 | None:intergenic |
| TGATGAAATAGGTTAAGGTA+GGG | 0.599454 | 4_4:-47738234 | None:intergenic |
| GTATTAGTACTTTGATGATG+TGG | 0.602592 | 4_4:-47738197 | None:intergenic |
| TTCGGAAGGAATGTCTAGCA+TGG | 0.602652 | 4_4:-47738547 | None:intergenic |
| TGAACAAACTCCAGCAACAT+GGG | 0.604199 | 4_4:-47738903 | None:intergenic |
| GACACGAGGCTTAGGTCCAG+AGG | 0.606175 | 4_4:-47740752 | None:intergenic |
| CTTCAATAGGTCCACTCTCG+AGG | 0.607048 | 4_4:-47742124 | None:intergenic |
| CCCTACAGAAGCGTCAATCA+CGG | 0.609485 | 4_4:+47742065 | Msa0684390:CDS |
| ACCGATTGGCAATCTTCGGA+AGG | 0.610699 | 4_4:-47738561 | None:intergenic |
| TGAGTTAAGTCCGTTGATGG+CGG | 0.619558 | 4_4:-47738345 | None:intergenic |
| TGTTGTGCCTCGATGGAATG+AGG | 0.622453 | 4_4:-47738459 | None:intergenic |
| CACCTTTATGCTCAAATCAG+GGG | 0.629363 | 4_4:+47738723 | Msa0684390:CDS |
| GAGAAGCAGACAGATTTCCA+GGG | 0.632232 | 4_4:+47739335 | Msa0684390:CDS |
| TGCAGGGGAGGGAAGACACG+AGG | 0.638385 | 4_4:-47740766 | None:intergenic |
| GTATATAGATGTCTAGACAA+AGG | 0.648851 | 4_4:+47739153 | Msa0684390:intron |
| ACGAGGCTTAGGTCCAGAGG+TGG | 0.659130 | 4_4:-47740749 | None:intergenic |
| CACTGCCATTACCAGTGTGT+AGG | 0.659864 | 4_4:-47738290 | None:intergenic |
| ATGGCTGTTGACCTACACAC+TGG | 0.672281 | 4_4:+47738279 | Msa0684390:CDS |
| GTTCAAGAGGCACATCATGT+GGG | 0.674495 | 4_4:+47739366 | Msa0684390:CDS |
| GCAGCTTATAGAGAAAGTCA+TGG | 0.677661 | 4_4:+47739209 | Msa0684390:CDS |
| TATAAGAAGGTACCATGCAG+GGG | 0.678814 | 4_4:-47740781 | None:intergenic |
| TCACATCAGACTAAGAGACC+TGG | 0.684527 | 4_4:+47739431 | Msa0684390:CDS |
| TTCACTTCCTCATTCCATCG+AGG | 0.701096 | 4_4:+47738452 | Msa0684390:CDS |
| TCTCTCGGGTATAAGAACAG+TGG | 0.720927 | 4_4:-47740686 | None:intergenic |
| ACACACTGGTAATGGCAGTG+GGG | 0.731212 | 4_4:+47738293 | Msa0684390:CDS |
| AAAGCACTGACTCCACCACG+TGG | 0.741477 | 4_4:-47739404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATATAACATTTTAAATTT+TGG | - | chr4_4:47739816-47739835 | None:intergenic | 10.0% |
| !!! | TTTACTTAAATTTAAGATTT+TGG | + | chr4_4:47740222-47740241 | Msa0684390:intron | 10.0% |
| !! | TTGTTAGTAATTATATTATA+TGG | - | chr4_4:47740952-47740971 | None:intergenic | 10.0% |
| !!! | CTGTTTATATATATATATTT+TGG | + | chr4_4:47741144-47741163 | Msa0684390:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr4_4:47741378-47741397 | Msa0684390:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr4_4:47741379-47741398 | Msa0684390:intron | 10.0% |
| !! | ATTAATTACAATCATATGAT+CGG | - | chr4_4:47739124-47739143 | None:intergenic | 15.0% |
| !!! | AAATTAAAGGATTAATTTGT+TGG | + | chr4_4:47739979-47739998 | Msa0684390:intron | 15.0% |
| !!! | AAATTTTAACTTTAGTTCTA+CGG | - | chr4_4:47740092-47740111 | None:intergenic | 15.0% |
| !! | AAAATTAGTTGAACATAAAA+TGG | - | chr4_4:47740151-47740170 | None:intergenic | 15.0% |
| !! | CTTAAATTTAAGTAAATGTT+TGG | - | chr4_4:47740218-47740237 | None:intergenic | 15.0% |
| !! | TCTTTAATAAATATTCACTT+TGG | + | chr4_4:47740810-47740829 | Msa0684390:intron | 15.0% |
| !! | ATTTATTTCACTAAAAACTA+AGG | + | chr4_4:47741287-47741306 | Msa0684390:intron | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | - | chr4_4:47741343-47741362 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr4_4:47741380-47741399 | Msa0684390:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4_4:47741443-47741462 | Msa0684390:intron | 15.0% |
| !! | TGTGATTTATTGCAATATAA+AGG | + | chr4_4:47739594-47739613 | Msa0684390:intron | 20.0% |
| !!! | TTGCAATTTAAAATCATGAT+TGG | + | chr4_4:47739650-47739669 | Msa0684390:intron | 20.0% |
| !!! | TTTTAGTAATTGAAATTGTG+TGG | + | chr4_4:47739722-47739741 | Msa0684390:intron | 20.0% |
| !! | TGACTTACATTATTCAATTT+AGG | - | chr4_4:47739765-47739784 | None:intergenic | 20.0% |
| !!! | AGATATTTCTATAGTTTTCA+TGG | + | chr4_4:47739879-47739898 | Msa0684390:intron | 20.0% |
| !!! | TTATTAAAGAGACATTTTGA+TGG | + | chr4_4:47739906-47739925 | Msa0684390:intron | 20.0% |
| !!! | TTGCTATTTCTGAAAATTAA+AGG | + | chr4_4:47739966-47739985 | Msa0684390:intron | 20.0% |
| !!! | TAAATTTAAGATTTTGGTGT+TGG | + | chr4_4:47740228-47740247 | Msa0684390:intron | 20.0% |
| !!! | AAATTTAAGATTTTGGTGTT+GGG | + | chr4_4:47740229-47740248 | Msa0684390:intron | 20.0% |
| !!! | ACTTTTCAAAAAAGAAACAA+TGG | - | chr4_4:47740529-47740548 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTTTTTGAAAAGT+AGG | + | chr4_4:47740529-47740548 | Msa0684390:intron | 20.0% |
| !! | TTTAATGTTTACATGTGATT+TGG | + | chr4_4:47740647-47740666 | Msa0684390:intron | 20.0% |
| !! | TTAAAGAAAAGACTATAAGA+AGG | - | chr4_4:47740797-47740816 | None:intergenic | 20.0% |
| !!! | TGTGCATTTTTTAAAGTTAA+GGG | - | chr4_4:47741014-47741033 | None:intergenic | 20.0% |
| !!! | ATGTGCATTTTTTAAAGTTA+AGG | - | chr4_4:47741015-47741034 | None:intergenic | 20.0% |
| !! | TGGTGAAAAAAAATAATCAT+GGG | - | chr4_4:47741062-47741081 | None:intergenic | 20.0% |
| !! | TTGGTGAAAAAAAATAATCA+TGG | - | chr4_4:47741063-47741082 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | - | chr4_4:47741344-47741363 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4_4:47741403-47741422 | Msa0684390:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+AGG | + | chr4_4:47741477-47741496 | Msa0684390:intron | 20.0% |
| !!! | CAGCAATTATCTTATTTAAA+TGG | + | chr4_4:47741734-47741753 | Msa0684390:intron | 20.0% |
| !! | GAGAAAAAGTAAAAAATGTT+AGG | + | chr4_4:47741885-47741904 | Msa0684390:intron | 20.0% |
| !! | TTACTTTATTCTGCTTTAAT+TGG | - | chr4_4:47742240-47742259 | None:intergenic | 20.0% |
| !! | ATAAAGTAATAAAGAAAAGC+TGG | + | chr4_4:47742251-47742270 | Msa0684390:three_prime_UTR | 20.0% |
| !! | AGATTAGATAGCAAAAATTA+TGG | + | chr4_4:47742351-47742370 | Msa0684390:three_prime_UTR | 20.0% |
| !!! | TATTAGTACTTTGATGATGT+GGG | - | chr4_4:47738199-47738218 | None:intergenic | 25.0% |
| !! | ATGAATGGTAATGATGAAAT+AGG | - | chr4_4:47738248-47738267 | None:intergenic | 25.0% |
| ! | CCATGATAAATAAGAATGAA+TGG | - | chr4_4:47738263-47738282 | None:intergenic | 25.0% |
| !! | CCATTCATTCTTATTTATCA+TGG | + | chr4_4:47738260-47738279 | Msa0684390:exon | 25.0% |
| ! | TTTGTGCATTAAGTAGATAT+TGG | - | chr4_4:47738934-47738953 | None:intergenic | 25.0% |
| ! | ATACTTCAGCAATAAAATAG+AGG | - | chr4_4:47738988-47739007 | None:intergenic | 25.0% |
| ! | ATGAAATTAAATGTGTCAGT+CGG | - | chr4_4:47739044-47739063 | None:intergenic | 25.0% |
| ! | AAAGAAGATGAAGTTAGATT+TGG | + | chr4_4:47739263-47739282 | Msa0684390:CDS | 25.0% |
| ! | AAGAAGATGAAGTTAGATTT+GGG | + | chr4_4:47739264-47739283 | Msa0684390:CDS | 25.0% |
| ! | AAGTATACACACATAAAAGT+CGG | - | chr4_4:47739489-47739508 | None:intergenic | 25.0% |
| ! | TAAGTAAATGTTTGGTTATG+TGG | - | chr4_4:47740210-47740229 | None:intergenic | 25.0% |
| ! | TTCAAAAAAGAAACAATGGA+TGG | - | chr4_4:47740525-47740544 | None:intergenic | 25.0% |
| !!! | GTGCATTTTTTAAAGTTAAG+GGG | - | chr4_4:47741013-47741032 | None:intergenic | 25.0% |
| !! | GTTTCAAACATTTGAGTTAT+TGG | - | chr4_4:47741082-47741101 | None:intergenic | 25.0% |
| !! | TTGCACAAAAAGTTAGATTT+TGG | + | chr4_4:47741249-47741268 | Msa0684390:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4_4:47741402-47741421 | Msa0684390:intron | 25.0% |
| !! | TTGAAATAGGTCAGTTATTT+TGG | + | chr4_4:47741490-47741509 | Msa0684390:intron | 25.0% |
| !!! | TGAAATAGGTCAGTTATTTT+GGG | + | chr4_4:47741491-47741510 | Msa0684390:intron | 25.0% |
| !! | CTTTTGCTTATATTAATGAC+CGG | - | chr4_4:47741579-47741598 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGTTGCTACAAA+TGG | - | chr4_4:47742176-47742195 | None:intergenic | 25.0% |
| ! | GAATAAATAAAATTCCCGAT+TGG | + | chr4_4:47742282-47742301 | Msa0684390:three_prime_UTR | 25.0% |
| !! | TACCTTAATTTTTGTGTAAG+AGG | + | chr4_4:47742412-47742431 | Msa0684390:three_prime_UTR | 25.0% |
| !! | GTATTAGTACTTTGATGATG+TGG | - | chr4_4:47738200-47738219 | None:intergenic | 30.0% |
| TGATGAAATAGGTTAAGGTA+GGG | - | chr4_4:47738237-47738256 | None:intergenic | 30.0% | |
| ATGATGAAATAGGTTAAGGT+AGG | - | chr4_4:47738238-47738257 | None:intergenic | 30.0% | |
| GGTAATGATGAAATAGGTTA+AGG | - | chr4_4:47738242-47738261 | None:intergenic | 30.0% | |
| TCCAACAAATTCATCATCAA+CGG | + | chr4_4:47738369-47738388 | Msa0684390:CDS | 30.0% | |
| ! | ATTCTGATTTCTCCTGATTT+TGG | + | chr4_4:47738411-47738430 | Msa0684390:CDS | 30.0% |
| TATGTATGAGATCCAAAATC+AGG | - | chr4_4:47738426-47738445 | None:intergenic | 30.0% | |
| AACCATATGCATATGTTGTT+GGG | - | chr4_4:47738523-47738542 | None:intergenic | 30.0% | |
| !! | AAAAACAAAGTAGTACCGAT+TGG | - | chr4_4:47738578-47738597 | None:intergenic | 30.0% |
| TTCTAAATACCATCAAAGCT+CGG | + | chr4_4:47738862-47738881 | Msa0684390:CDS | 30.0% | |
| TGAAATTAAATGTGTCAGTC+GGG | - | chr4_4:47739043-47739062 | None:intergenic | 30.0% | |
| TATATTATGTGTTACCGTGT+TGG | + | chr4_4:47739086-47739105 | Msa0684390:intron | 30.0% | |
| GTATATAGATGTCTAGACAA+AGG | + | chr4_4:47739153-47739172 | Msa0684390:intron | 30.0% | |
| !! | TACCATTCTTCTGAAATTGT+GGG | - | chr4_4:47739244-47739263 | None:intergenic | 30.0% |
| !! | TTACCATTCTTCTGAAATTG+TGG | - | chr4_4:47739245-47739264 | None:intergenic | 30.0% |
| ATGATTGGAAGAGTTAAAAG+TGG | + | chr4_4:47739665-47739684 | Msa0684390:intron | 30.0% | |
| TGATTGGAAGAGTTAAAAGT+GGG | + | chr4_4:47739666-47739685 | Msa0684390:intron | 30.0% | |
| TGTTTGTTTAATGTAGTACG+AGG | + | chr4_4:47739833-47739852 | Msa0684390:intron | 30.0% | |
| TTAGACAGTAGTATACTGTA+GGG | - | chr4_4:47740327-47740346 | None:intergenic | 30.0% | |
| ATTAGACAGTAGTATACTGT+AGG | - | chr4_4:47740328-47740347 | None:intergenic | 30.0% | |
| GTATACTACTGTCTAATATG+CGG | + | chr4_4:47740331-47740350 | Msa0684390:intron | 30.0% | |
| !! | GTTTGTTGTACACATTTCAT+TGG | + | chr4_4:47740621-47740640 | Msa0684390:intron | 30.0% |
| TTGTGTCAATTAAATTGGGA+CGG | - | chr4_4:47741339-47741358 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4_4:47741387-47741406 | Msa0684390:intron | 30.0% | |
| AGAAAATGTGTCAGTTATTC+CGG | + | chr4_4:47741527-47741546 | Msa0684390:intron | 30.0% | |
| ! | CTTTTGCTTATATTAGTGAC+CGG | + | chr4_4:47741687-47741706 | Msa0684390:intron | 30.0% |
| ! | TAACAGCACTGAAAATATCA+GGG | - | chr4_4:47741779-47741798 | None:intergenic | 30.0% |
| ! | ATAACAGCACTGAAAATATC+AGG | - | chr4_4:47741780-47741799 | None:intergenic | 30.0% |
| !! | TGATATTTTCAGTGCTGTTA+TGG | + | chr4_4:47741779-47741798 | Msa0684390:intron | 30.0% |
| CAGTCAAAGTAAACTTGAAA+AGG | - | chr4_4:47741855-47741874 | None:intergenic | 30.0% | |
| !!! | AATGTTAGGTTCACTGATTT+TGG | + | chr4_4:47741899-47741918 | Msa0684390:intron | 30.0% |
| ! | CAAATTGATTGCAGATGTTT+TGG | + | chr4_4:47742015-47742034 | Msa0684390:intron | 30.0% |
| !!! | ATGTTTTGGTGAGTACTAAT+AGG | + | chr4_4:47742029-47742048 | Msa0684390:CDS | 30.0% |
| !!! | TGTTTTGGTGAGTACTAATA+GGG | + | chr4_4:47742030-47742049 | Msa0684390:CDS | 30.0% |
| ! | TTATGTGTAGGGAAATCTTT+TGG | + | chr4_4:47742307-47742326 | Msa0684390:three_prime_UTR | 30.0% |
| !! | ACCGTTGATGATGAATTTGT+TGG | - | chr4_4:47738373-47738392 | None:intergenic | 35.0% |
| TACCCAACAACATATGCATA+TGG | + | chr4_4:47738518-47738537 | Msa0684390:CDS | 35.0% | |
| GAACCATATGCATATGTTGT+TGG | - | chr4_4:47738524-47738543 | None:intergenic | 35.0% | |
| TCACCTTTATGCTCAAATCA+GGG | + | chr4_4:47738722-47738741 | Msa0684390:CDS | 35.0% | |
| CTTCAGCAATAAAATAGAGG+TGG | - | chr4_4:47738985-47739004 | None:intergenic | 35.0% | |
| TGCTTGACATTCTTCGAATT+AGG | + | chr4_4:47739013-47739032 | Msa0684390:intron | 35.0% | |
| !! | ACCATTCTTCTGAAATTGTG+GGG | - | chr4_4:47739243-47739262 | None:intergenic | 35.0% |
| AGATGAAGTTAGATTTGGGA+TGG | + | chr4_4:47739268-47739287 | Msa0684390:CDS | 35.0% | |
| ACACATAAAAGTCGGTAAAC+GGG | - | chr4_4:47739481-47739500 | None:intergenic | 35.0% | |
| CACACATAAAAGTCGGTAAA+CGG | - | chr4_4:47739482-47739501 | None:intergenic | 35.0% | |
| TACTTTGAACTTTGTGAGCA+TGG | + | chr4_4:47739504-47739523 | Msa0684390:intron | 35.0% | |
| !!! | GTGAGCATGGTTTTAAATTG+TGG | + | chr4_4:47739517-47739536 | Msa0684390:intron | 35.0% |
| !! | AACCACAATTTTAACCGCAT+TGG | + | chr4_4:47739570-47739589 | Msa0684390:intron | 35.0% |
| !! | ACCACAATTTTAACCGCATT+GGG | + | chr4_4:47739571-47739590 | Msa0684390:intron | 35.0% |
| GAAATATCTATGTGTCAGCT+TGG | - | chr4_4:47739868-47739887 | None:intergenic | 35.0% | |
| ! | TGTTGGACGCTACAATTTTA+AGG | + | chr4_4:47739996-47740015 | Msa0684390:intron | 35.0% |
| ! | TGTTTGTTAGCTAGTAGTTG+AGG | + | chr4_4:47740271-47740290 | Msa0684390:intron | 35.0% |
| TAGTAATACAGCCACATGTA+GGG | - | chr4_4:47740403-47740422 | None:intergenic | 35.0% | |
| ATAGTAATACAGCCACATGT+AGG | - | chr4_4:47740404-47740423 | None:intergenic | 35.0% | |
| AAGACTACATGGTTCAAACA+TGG | - | chr4_4:47740465-47740484 | None:intergenic | 35.0% | |
| ATGGATAAGAGAAGACTACA+TGG | - | chr4_4:47740476-47740495 | None:intergenic | 35.0% | |
| AGTCTTCTCTTATCCATCAT+CGG | + | chr4_4:47740479-47740498 | Msa0684390:intron | 35.0% | |
| CTAGAGAGAATCAGCAAAAT+TGG | - | chr4_4:47740592-47740611 | None:intergenic | 35.0% | |
| !! | TGTTTACATGTGATTTGGTC+AGG | + | chr4_4:47740652-47740671 | Msa0684390:intron | 35.0% |
| GAGACACTTATAACCATTTG+AGG | + | chr4_4:47740974-47740993 | Msa0684390:intron | 35.0% | |
| ACACTTATAACCATTTGAGG+TGG | + | chr4_4:47740977-47740996 | Msa0684390:intron | 35.0% | |
| ! | CACTTATAACCATTTGAGGT+GGG | + | chr4_4:47740978-47740997 | Msa0684390:intron | 35.0% |
| TTAATTGTACCCACCTCAAA+TGG | - | chr4_4:47740990-47741009 | None:intergenic | 35.0% | |
| ! | AAATGTTTGAAACCTGAGTC+AGG | + | chr4_4:47741089-47741108 | Msa0684390:intron | 35.0% |
| ! | AATGTTTGAAACCTGAGTCA+GGG | + | chr4_4:47741090-47741109 | Msa0684390:intron | 35.0% |
| TCATCTCAATCTCCAAATGT+GGG | - | chr4_4:47741207-47741226 | None:intergenic | 35.0% | |
| ATCATCTCAATCTCCAAATG+TGG | - | chr4_4:47741208-47741227 | None:intergenic | 35.0% | |
| ! | TAACTTTTTGTGCAAGCAAG+AGG | - | chr4_4:47741244-47741263 | None:intergenic | 35.0% |
| GAAAATGTGTCAGTTATTCC+GGG | + | chr4_4:47741528-47741547 | Msa0684390:intron | 35.0% | |
| TGCTTATATTAATGACCGGA+GGG | - | chr4_4:47741575-47741594 | None:intergenic | 35.0% | |
| TTGCTTATATTAATGACCGG+AGG | - | chr4_4:47741576-47741595 | None:intergenic | 35.0% | |
| AGAAAATCTTATACACCCTC+CGG | - | chr4_4:47741709-47741728 | None:intergenic | 35.0% | |
| GATTCATGTTAGTACTTGTG+TGG | + | chr4_4:47742208-47742227 | Msa0684390:three_prime_UTR | 35.0% | |
| TAAAGAAAAGCTGGTTGAAG+AGG | + | chr4_4:47742260-47742279 | Msa0684390:three_prime_UTR | 35.0% | |
| TCCCTACACATAAATCCAAT+CGG | - | chr4_4:47742300-47742319 | None:intergenic | 35.0% | |
| CGCCTCTTACACAAAAATTA+AGG | - | chr4_4:47742417-47742436 | None:intergenic | 35.0% | |
| AATAGGTTAAGGTAGGGAGA+AGG | - | chr4_4:47738231-47738250 | None:intergenic | 40.0% | |
| AGATCGTCTTCTTTCTCTTG+CGG | - | chr4_4:47738486-47738505 | None:intergenic | 40.0% | |
| !! | TAGTACCGATTGGCAATCTT+CGG | - | chr4_4:47738568-47738587 | None:intergenic | 40.0% |
| !!! | TTTTTTGTTCTGCTGACTCG+AGG | + | chr4_4:47738593-47738612 | Msa0684390:intron | 40.0% |
| CTTCTATCAGTTGAAGCCAA+TGG | + | chr4_4:47738664-47738683 | Msa0684390:intron | 40.0% | |
| GTCACCTTTATGCTCAAATC+AGG | + | chr4_4:47738721-47738740 | Msa0684390:CDS | 40.0% | |
| CACCTTTATGCTCAAATCAG+GGG | + | chr4_4:47738723-47738742 | Msa0684390:CDS | 40.0% | |
| ! | TCAGAATCATAGCTGTTTCC+AGG | - | chr4_4:47738788-47738807 | None:intergenic | 40.0% |
| TGAACAAACTCCAGCAACAT+GGG | - | chr4_4:47738906-47738925 | None:intergenic | 40.0% | |
| ATGAACAAACTCCAGCAACA+TGG | - | chr4_4:47738907-47738926 | None:intergenic | 40.0% | |
| TGCACAAATTCGAGCTAATC+AGG | + | chr4_4:47738946-47738965 | Msa0684390:CDS | 40.0% | |
| GCAGCTTATAGAGAAAGTCA+TGG | + | chr4_4:47739209-47739228 | Msa0684390:CDS | 40.0% | |
| ! | TCTGAAATTGTGGGGTCAAA+TGG | - | chr4_4:47739235-47739254 | None:intergenic | 40.0% |
| ACCCCACAATTTCAGAAGAA+TGG | + | chr4_4:47739239-47739258 | Msa0684390:CDS | 40.0% | |
| CACATAAAAGTCGGTAAACG+GGG | - | chr4_4:47739480-47739499 | None:intergenic | 40.0% | |
| CCGTTTACCAATTATGGTTG+CGG | - | chr4_4:47739544-47739563 | None:intergenic | 40.0% | |
| CCGCAACCATAATTGGTAAA+CGG | + | chr4_4:47739541-47739560 | Msa0684390:intron | 40.0% | |
| GTAACGCCGTTTACCAATTA+TGG | - | chr4_4:47739550-47739569 | None:intergenic | 40.0% | |
| ACCCAATGCGGTTAAAATTG+TGG | - | chr4_4:47739575-47739594 | None:intergenic | 40.0% | |
| GCAATAAATCACACCCAATG+CGG | - | chr4_4:47739587-47739606 | None:intergenic | 40.0% | |
| TAGCTAGTAGTTGAGGTAGT+TGG | + | chr4_4:47740278-47740297 | Msa0684390:intron | 40.0% | |
| GAGGTAGTTGGTTATTGACA+TGG | + | chr4_4:47740290-47740309 | Msa0684390:intron | 40.0% | |
| GTAGTTGGTTATTGACATGG+TGG | + | chr4_4:47740293-47740312 | Msa0684390:intron | 40.0% | |
| !! | CATGTGATTTGGTCAGGTAA+AGG | + | chr4_4:47740658-47740677 | Msa0684390:intron | 40.0% |
| AAAGCTTGTACTACTCTCTC+GGG | - | chr4_4:47740703-47740722 | None:intergenic | 40.0% | |
| CAAAGCTTGTACTACTCTCT+CGG | - | chr4_4:47740704-47740723 | None:intergenic | 40.0% | |
| !! | TATAAGAAGGTACCATGCAG+GGG | - | chr4_4:47740784-47740803 | None:intergenic | 40.0% |
| !! | CTATAAGAAGGTACCATGCA+GGG | - | chr4_4:47740785-47740804 | None:intergenic | 40.0% |
| !! | ACTATAAGAAGGTACCATGC+AGG | - | chr4_4:47740786-47740805 | None:intergenic | 40.0% |
| TTAAGAACACCTCCCACATT+TGG | + | chr4_4:47741192-47741211 | Msa0684390:intron | 40.0% | |
| TTTGTGCAAGCAAGAGGAAT+AGG | - | chr4_4:47741238-47741257 | None:intergenic | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | - | chr4_4:47741336-47741355 | None:intergenic | 40.0% | |
| GAAGTAATATCTACACCCTC+CGG | + | chr4_4:47741557-47741576 | Msa0684390:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr4_4:47741690-47741709 | Msa0684390:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr4_4:47741691-47741710 | Msa0684390:intron | 40.0% | |
| TTGGTGAGTACTAATAGGGA+TGG | + | chr4_4:47742034-47742053 | Msa0684390:CDS | 40.0% | |
| TGCTTCACTTCTGCTTCAAT+AGG | - | chr4_4:47742140-47742159 | None:intergenic | 40.0% | |
| TCCCGATTGGATTTATGTGT+AGG | + | chr4_4:47742295-47742314 | Msa0684390:three_prime_UTR | 40.0% | |
| CCCTACACATAAATCCAATC+GGG | - | chr4_4:47742299-47742318 | None:intergenic | 40.0% | |
| CCCGATTGGATTTATGTGTA+GGG | + | chr4_4:47742296-47742315 | Msa0684390:three_prime_UTR | 40.0% | |
| TGTTCTGTATGATCCATCCT+TGG | - | chr4_4:47742442-47742461 | None:intergenic | 40.0% | |
| GTTGACCTACACACTGGTAA+TGG | + | chr4_4:47738285-47738304 | Msa0684390:CDS | 45.0% | |
| !! | TACACACTGGTAATGGCAGT+GGG | + | chr4_4:47738292-47738311 | Msa0684390:CDS | 45.0% |
| ! | TGAGTTAAGTCCGTTGATGG+CGG | - | chr4_4:47738348-47738367 | None:intergenic | 45.0% |
| GAGTGAGTTAAGTCCGTTGA+TGG | - | chr4_4:47738351-47738370 | None:intergenic | 45.0% | |
| TTCACTTCCTCATTCCATCG+AGG | + | chr4_4:47738452-47738471 | Msa0684390:CDS | 45.0% | |
| TTCGGAAGGAATGTCTAGCA+TGG | - | chr4_4:47738550-47738569 | None:intergenic | 45.0% | |
| TCCTTCCGAAGATTGCCAAT+CGG | + | chr4_4:47738560-47738579 | Msa0684390:CDS | 45.0% | |
| ! | GCTGGTCTCAATCATCTCTT+TGG | + | chr4_4:47738699-47738718 | Msa0684390:CDS | 45.0% |
| ! | CTCCCCTGATTTGAGCATAA+AGG | - | chr4_4:47738728-47738747 | None:intergenic | 45.0% |
| ! | TCAAATCAGGGGAGTTCTGA+AGG | + | chr4_4:47738734-47738753 | Msa0684390:CDS | 45.0% |
| TGAAGGCTCTTTGTCTCCTA+AGG | + | chr4_4:47738751-47738770 | Msa0684390:CDS | 45.0% | |
| ATACCATCAAAGCTCGGAGA+TGG | + | chr4_4:47738868-47738887 | Msa0684390:CDS | 45.0% | |
| ACATCTCAATCCCATGTTGC+TGG | + | chr4_4:47738893-47738912 | Msa0684390:CDS | 45.0% | |
| GGAACAAACAGACACCAACA+CGG | - | chr4_4:47739103-47739122 | None:intergenic | 45.0% | |
| GAGAAGCAGACAGATTTCCA+GGG | + | chr4_4:47739335-47739354 | Msa0684390:CDS | 45.0% | |
| ACATGATGTGCCTCTTGAAC+CGG | - | chr4_4:47739366-47739385 | None:intergenic | 45.0% | |
| ! | GTTCAAGAGGCACATCATGT+GGG | + | chr4_4:47739366-47739385 | Msa0684390:CDS | 45.0% |
| TCACATCAGACTAAGAGACC+TGG | + | chr4_4:47739431-47739450 | Msa0684390:CDS | 45.0% | |
| GACATAGTTCGTTGCATACC+AGG | - | chr4_4:47739452-47739471 | None:intergenic | 45.0% | |
| TTGTGGTCCGCAACCATAAT+TGG | + | chr4_4:47739534-47739553 | Msa0684390:intron | 45.0% | |
| AATACAGCCACATGTAGGGT+CGG | - | chr4_4:47740399-47740418 | None:intergenic | 45.0% | |
| TCTCTTATCCATCATCGGTG+TGG | + | chr4_4:47740484-47740503 | Msa0684390:intron | 45.0% | |
| CTCTTATCCATCATCGGTGT+GGG | + | chr4_4:47740485-47740504 | Msa0684390:intron | 45.0% | |
| TCTTATCCATCATCGGTGTG+GGG | + | chr4_4:47740486-47740505 | Msa0684390:intron | 45.0% | |
| TCTCTCGGGTATAAGAACAG+TGG | - | chr4_4:47740689-47740708 | None:intergenic | 45.0% | |
| TGGCAGCAATTTGGTCAAAG+TGG | - | chr4_4:47740732-47740751 | None:intergenic | 45.0% | |
| TCTCAATCTCCAAATGTGGG+AGG | - | chr4_4:47741204-47741223 | None:intergenic | 45.0% | |
| ATGTGTCAGTTATTCCGGGA+CGG | + | chr4_4:47741532-47741551 | Msa0684390:intron | 45.0% | |
| AGATATTACTTCCTCCGTCC+CGG | - | chr4_4:47741549-47741568 | None:intergenic | 45.0% | |
| TCTAGCAAGTTGCTGTCACT+TGG | - | chr4_4:47741966-47741985 | None:intergenic | 45.0% | |
| TTTGTGTAAGAGGCGATCCA+AGG | + | chr4_4:47742422-47742441 | Msa0684390:three_prime_UTR | 45.0% | |
| !! | TATATATAAATATTAAAGAA+TGG | - | chr4_4:47741817-47741836 | None:intergenic | 5.0% |
| ATGGCTGTTGACCTACACAC+TGG | + | chr4_4:47738279-47738298 | Msa0684390:CDS | 50.0% | |
| CACTGCCATTACCAGTGTGT+AGG | - | chr4_4:47738293-47738312 | None:intergenic | 50.0% | |
| !! | CTACACACTGGTAATGGCAG+TGG | + | chr4_4:47738291-47738310 | Msa0684390:CDS | 50.0% |
| !! | ACACACTGGTAATGGCAGTG+GGG | + | chr4_4:47738293-47738312 | Msa0684390:CDS | 50.0% |
| GGCGGGAGTAACGAATCATA+AGG | - | chr4_4:47738330-47738349 | None:intergenic | 50.0% | |
| TTCGTTACTCCCGCCATCAA+CGG | + | chr4_4:47738335-47738354 | Msa0684390:CDS | 50.0% | |
| !! | GAGTTAAGTCCGTTGATGGC+GGG | - | chr4_4:47738347-47738366 | None:intergenic | 50.0% |
| TGTTGTGCCTCGATGGAATG+AGG | - | chr4_4:47738462-47738481 | None:intergenic | 50.0% | |
| ACCGATTGGCAATCTTCGGA+AGG | - | chr4_4:47738564-47738583 | None:intergenic | 50.0% | |
| CAGCAACTCATCGAGTCCAT+TGG | - | chr4_4:47738683-47738702 | None:intergenic | 50.0% | |
| ! | CAATGGACTCGATGAGTTGC+TGG | + | chr4_4:47738681-47738700 | Msa0684390:CDS | 50.0% |
| ! | TAGCTGTTTCCAGGCTCAGA+TGG | - | chr4_4:47738779-47738798 | None:intergenic | 50.0% |
| ! | TCTCCATCTCCGAGCTTTGA+TGG | - | chr4_4:47738874-47738893 | None:intergenic | 50.0% |
| TTGGGATGGCACCTTTGCAA+CGG | + | chr4_4:47739282-47739301 | Msa0684390:CDS | 50.0% | |
| GGAGAAGCAGACAGATTTCC+AGG | + | chr4_4:47739334-47739353 | Msa0684390:CDS | 50.0% | |
| ACAGATTTCCAGGGAGCAAC+CGG | + | chr4_4:47739344-47739363 | Msa0684390:CDS | 50.0% | |
| ! | GGTTCAAGAGGCACATCATG+TGG | + | chr4_4:47739365-47739384 | Msa0684390:CDS | 50.0% |
| ! | ACAGGTGTTTTCTTGCCACG+TGG | + | chr4_4:47739389-47739408 | Msa0684390:CDS | 50.0% |
| ATTGTGACCGACCCTACATG+TGG | + | chr4_4:47740389-47740408 | Msa0684390:intron | 50.0% | |
| TGAAACCTGAGTCAGGGTCT+TGG | + | chr4_4:47741096-47741115 | Msa0684390:intron | 50.0% | |
| TCAGGGTCTTGGTTACGTCA+GGG | + | chr4_4:47741107-47741126 | Msa0684390:intron | 50.0% | |
| TCTTGGTTACGTCAGGGTCT+TGG | + | chr4_4:47741113-47741132 | Msa0684390:intron | 50.0% | |
| CCGTGATTGACGCTTCTGTA+GGG | - | chr4_4:47742068-47742087 | None:intergenic | 50.0% | |
| !! | CCCTACAGAAGCGTCAATCA+CGG | + | chr4_4:47742065-47742084 | Msa0684390:CDS | 50.0% |
| TCCGTGATTGACGCTTCTGT+AGG | - | chr4_4:47742069-47742088 | None:intergenic | 50.0% | |
| AGATGATTCTGCCTCGAGAG+TGG | + | chr4_4:47742113-47742132 | Msa0684390:CDS | 50.0% | |
| CTTCAATAGGTCCACTCTCG+AGG | - | chr4_4:47742127-47742146 | None:intergenic | 50.0% | |
| TGTAAGAGGCGATCCAAGGA+TGG | + | chr4_4:47742426-47742445 | Msa0684390:three_prime_UTR | 50.0% | |
| CCAGGCTCAGATGGTTCCTT+AGG | - | chr4_4:47738770-47738789 | None:intergenic | 55.0% | |
| CCTAAGGAACCATCTGAGCC+TGG | + | chr4_4:47738767-47738786 | Msa0684390:CDS | 55.0% | |
| ATAGGACCAGGCCGTTGCAA+AGG | - | chr4_4:47739296-47739315 | None:intergenic | 55.0% | |
| TATGCACCAGCAGGCAGGTT+CGG | + | chr4_4:47739313-47739332 | Msa0684390:CDS | 55.0% | |
| ! | AGAGGCACATCATGTGGGAC+AGG | + | chr4_4:47739371-47739390 | Msa0684390:CDS | 55.0% |
| ! | GGTGTTTTCTTGCCACGTGG+TGG | + | chr4_4:47739392-47739411 | Msa0684390:CDS | 55.0% |
| !! | AAAGCACTGACTCCACCACG+TGG | - | chr4_4:47739407-47739426 | None:intergenic | 55.0% |
| GACCAAATTGCTGCCACCTC+TGG | + | chr4_4:47740736-47740755 | Msa0684390:CDS | 55.0% | |
| GTCCAGAGGTGGCAGCAATT+TGG | - | chr4_4:47740741-47740760 | None:intergenic | 55.0% | |
| !! | AGAAGGTACCATGCAGGGGA+GGG | - | chr4_4:47740780-47740799 | None:intergenic | 55.0% |
| !! | AAGAAGGTACCATGCAGGGG+AGG | - | chr4_4:47740781-47740800 | None:intergenic | 55.0% |
| CGTAACCAAGACCCTGACTC+AGG | - | chr4_4:47741104-47741123 | None:intergenic | 55.0% | |
| GTCAGGGTCTTGGTTACGTC+AGG | + | chr4_4:47741106-47741125 | Msa0684390:intron | 55.0% | |
| TGTCAGTTATTCCGGGACGG+AGG | + | chr4_4:47741535-47741554 | Msa0684390:intron | 55.0% | |
| TTGCGGCTGTTGTGCCTCGA+TGG | - | chr4_4:47738469-47738488 | None:intergenic | 60.0% | |
| ATGGCACCTTTGCAACGGCC+TGG | + | chr4_4:47739287-47739306 | Msa0684390:CDS | 60.0% | |
| GAACCTGCCTGCTGGTGCAT+AGG | - | chr4_4:47739314-47739333 | None:intergenic | 60.0% | |
| CTCTTGAACCGGTTGCTCCC+TGG | - | chr4_4:47739355-47739374 | None:intergenic | 60.0% | |
| ! | CAGGGAGCAACCGGTTCAAG+AGG | + | chr4_4:47739353-47739372 | Msa0684390:CDS | 60.0% |
| CATGTGCCCCACACCGATGA+TGG | - | chr4_4:47740495-47740514 | None:intergenic | 60.0% | |
| ACGAGGCTTAGGTCCAGAGG+TGG | - | chr4_4:47740752-47740771 | None:intergenic | 60.0% | |
| GACACGAGGCTTAGGTCCAG+AGG | - | chr4_4:47740755-47740774 | None:intergenic | 60.0% | |
| GGAGGGAAGACACGAGGCTT+AGG | - | chr4_4:47740763-47740782 | None:intergenic | 60.0% | |
| GCCTGGTCCTATGCACCAGC+AGG | + | chr4_4:47739304-47739323 | Msa0684390:CDS | 65.0% | |
| GCCTGCTGGTGCATAGGACC+AGG | - | chr4_4:47739308-47739327 | None:intergenic | 65.0% | |
| GGTCCTATGCACCAGCAGGC+AGG | + | chr4_4:47739308-47739327 | Msa0684390:CDS | 65.0% | |
| GCTTCTCCGAACCTGCCTGC+TGG | - | chr4_4:47739322-47739341 | None:intergenic | 65.0% | |
| TGCAGGGGAGGGAAGACACG+AGG | - | chr4_4:47740769-47740788 | None:intergenic | 65.0% | |
| CGTGTCTTCCCTCCCCTGCA+TGG | + | chr4_4:47740769-47740788 | Msa0684390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47738181 | 47742480 | 47738181 | ID=Msa0684390;Name=Msa0684390 |
| chr4_4 | mRNA | 47738181 | 47742480 | 47738181 | ID=Msa0684390-mRNA-1;Parent=Msa0684390;Name=Msa0684390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|5|336|373 |
| chr4_4 | exon | 47738181 | 47738581 | 47738181 | ID=Msa0684390-mRNA-1:exon:11778;Parent=Msa0684390-mRNA-1 |
| chr4_4 | exon | 47738674 | 47738967 | 47738674 | ID=Msa0684390-mRNA-1:exon:11779;Parent=Msa0684390-mRNA-1 |
| chr4_4 | exon | 47739161 | 47739452 | 47739161 | ID=Msa0684390-mRNA-1:exon:11780;Parent=Msa0684390-mRNA-1 |
| chr4_4 | exon | 47740674 | 47740790 | 47740674 | ID=Msa0684390-mRNA-1:exon:11781;Parent=Msa0684390-mRNA-1 |
| chr4_4 | exon | 47742029 | 47742480 | 47742029 | ID=Msa0684390-mRNA-1:exon:11782;Parent=Msa0684390-mRNA-1 |
| chr4_4 | five_prime_UTR | 47738181 | 47738278 | 47738181 | ID=Msa0684390-mRNA-1:five_prime_utr;Parent=Msa0684390-mRNA-1 |
| chr4_4 | CDS | 47738279 | 47738581 | 47738279 | ID=Msa0684390-mRNA-1:cds;Parent=Msa0684390-mRNA-1 |
| chr4_4 | CDS | 47738674 | 47738967 | 47738674 | ID=Msa0684390-mRNA-1:cds;Parent=Msa0684390-mRNA-1 |
| chr4_4 | CDS | 47739161 | 47739452 | 47739161 | ID=Msa0684390-mRNA-1:cds;Parent=Msa0684390-mRNA-1 |
| chr4_4 | CDS | 47740674 | 47740790 | 47740674 | ID=Msa0684390-mRNA-1:cds;Parent=Msa0684390-mRNA-1 |
| chr4_4 | CDS | 47742029 | 47742144 | 47742029 | ID=Msa0684390-mRNA-1:cds;Parent=Msa0684390-mRNA-1 |
| chr4_4 | three_prime_UTR | 47742145 | 47742480 | 47742145 | ID=Msa0684390-mRNA-1:three_prime_utr;Parent=Msa0684390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
