AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334690 MtrunA17_Chr4g0060791 98.918 462 5 0 1 462 1 462 0.0 942
Msa1334690 MtrunA17_Chr5g0440511 62.700 437 154 4 27 460 18 448 0.0 561
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334690 AT1G74470.1 83.226 465 74 2 2 462 3 467 0.0 776

Find 196 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATATGCTATTGCATTTC+AGG 0.142330 8_4:-55199225 Msa1334690:intron
GATTTCATGTGGATAGATTT+TGG 0.169020 8_4:+55200048 None:intergenic
CGGCGGTGGGAGATGGGTTT+GGG 0.176192 8_4:+55199815 None:intergenic
TAGGAGAATTGGGTGGTTTC+TGG 0.183189 8_4:+55199842 None:intergenic
ACAGCAACATGGTCACATTT+TGG 0.197386 8_4:+55198499 None:intergenic
AGGGGATTTGAGGAAATATT+TGG 0.198675 8_4:-55198185 Msa1334690:CDS
TTGTGATTTGTGGGAGTTTA+TGG 0.214340 8_4:+55199997 None:intergenic
GCGGCGGTGGGAGATGGGTT+TGG 0.244292 8_4:+55199814 None:intergenic
CTCCAATCACCAGTCTATAT+TGG 0.255864 8_4:+55197761 None:intergenic
CTTCCTCATCGAACGTAAAA+TGG 0.256761 8_4:-55199663 Msa1334690:CDS
TTGGCCTACTTATAAGGTTT+TGG 0.265070 8_4:-55198143 Msa1334690:CDS
GACATATTGGCCTACTTATA+AGG 0.266128 8_4:-55198149 Msa1334690:CDS
TGAGGAAATATTTGGAGAAA+TGG 0.276745 8_4:-55198177 Msa1334690:CDS
GAATTTGCGGCGGTGGGAGA+TGG 0.294183 8_4:+55199808 None:intergenic
AGAGCCGAGGACAAGATCTT+AGG 0.294607 8_4:-55198415 Msa1334690:CDS
TTGATGATTATCTTAGAAAT+AGG 0.295715 8_4:-55199457 Msa1334690:CDS
TTGGAAGTTGATGCTGTTAT+TGG 0.299811 8_4:-55199299 Msa1334690:CDS
GTTTGGGGCGGTAGGAGAAT+TGG 0.301030 8_4:+55199831 None:intergenic
CTTCGTGGCCTTGGATGTTC+TGG 0.306980 8_4:+55198358 None:intergenic
AGAAATAGGGCTAAGGAAAA+TGG 0.307503 8_4:-55199443 Msa1334690:CDS
TCTGCTGCTGCACCACCTGC+TGG 0.311242 8_4:+55199713 None:intergenic
CCTGACAATCTTCGTGGCCT+TGG 0.325683 8_4:+55198349 None:intergenic
GACGTTTCTCCTGACTTCTA+TGG 0.335820 8_4:-55198532 Msa1334690:CDS
ACACCATTGGGAGCTTGGTT+AGG 0.343371 8_4:-55197964 Msa1334690:CDS
TCTTCTTATGATGGGAAAAC+TGG 0.344602 8_4:-55199344 Msa1334690:CDS
CTTCATTATTCTTCTTATGA+TGG 0.346960 8_4:-55199353 Msa1334690:CDS
GAATTTATGAGATTTGATTT+AGG 0.351328 8_4:-55197655 Msa1334690:three_prime_UTR
TTTGGGGCGGTAGGAGAATT+GGG 0.355885 8_4:+55199832 None:intergenic
TGCGCACATCCTCCCACTCT+TGG 0.361852 8_4:+55198255 None:intergenic
GAGGAAATATTTGGAGAAAT+GGG 0.367293 8_4:-55198176 Msa1334690:CDS
GGCCTTGGATGTTCTGGTAT+AGG 0.367492 8_4:+55198364 None:intergenic
TTAAATATACCAATGATAAT+TGG 0.368524 8_4:-55197582 Msa1334690:three_prime_UTR
TGATGATTATCTTAGAAATA+GGG 0.374290 8_4:-55199456 Msa1334690:CDS
GATTCCTTCTCCGGAACATT+TGG 0.376897 8_4:+55198288 None:intergenic
GCCTTGGATGTTCTGGTATA+GGG 0.379558 8_4:+55198365 None:intergenic
GTCAGGGAGGGTCGCGCTTG+TGG 0.383632 8_4:-55198332 Msa1334690:CDS
GCGCTTGTGGGTGATGCTGC+TGG 0.386839 8_4:-55198319 Msa1334690:CDS
GATAATTGGTCTAGTTGATA+AGG 0.388986 8_4:-55197568 Msa1334690:three_prime_UTR
TTCTCCTGACTTCTATGGTT+GGG 0.390021 8_4:-55198527 Msa1334690:CDS
CTTAAGTCTCATGAGTATAT+TGG 0.401506 8_4:-55199500 Msa1334690:CDS
TCCCTTGTGTGTCACAGTTC+CGG 0.402699 8_4:+55198471 None:intergenic
TCCAATCACCAGTCTATATT+GGG 0.403384 8_4:+55197762 None:intergenic
TGGATATGGTTTGTGATTTG+TGG 0.404759 8_4:+55199987 None:intergenic
CGACGGTGAATTTGCGGCGG+TGG 0.405841 8_4:+55199801 None:intergenic
GAGCCGAGGACAAGATCTTA+GGG 0.407230 8_4:-55198414 Msa1334690:CDS
CCAAGGCCACGAAGATTGTC+AGG 0.407730 8_4:-55198349 Msa1334690:CDS
CACCATTGGGAGCTTGGTTA+GGG 0.417891 8_4:-55197963 Msa1334690:CDS
TGGTTAGGGCTAATGCTCTA+AGG 0.419103 8_4:-55197949 Msa1334690:CDS
AGAGGCAATTGTGCAGGGTT+CGG 0.420268 8_4:-55198233 Msa1334690:CDS
GGATATGGTTTGTGATTTGT+GGG 0.424823 8_4:+55199988 None:intergenic
TATCAACACCATTGGGAGCT+TGG 0.425273 8_4:-55197969 Msa1334690:CDS
GTTTATGGCCGTTGGATGGA+TGG 0.427606 8_4:+55200012 None:intergenic
AGTGAGGGAGTGAGGAATGA+GGG 0.428654 8_4:+55199927 None:intergenic
TCAACTAGACCAATTATCAT+TGG 0.432252 8_4:+55197573 None:intergenic
TGATAAATTAATATGTATAC+AGG 0.436388 8_4:+55197868 None:intergenic
TCAACAAAAGCTTCCCTAGC+AGG 0.436433 8_4:+55198088 None:intergenic
TTCATTATTCTTCTTATGAT+GGG 0.438606 8_4:-55199352 Msa1334690:CDS
ACTGGTGATTGGAGCATAGC+AGG 0.439829 8_4:-55197752 Msa1334690:three_prime_UTR
CTGTACAAGACTGTTGTGCC+TGG 0.441769 8_4:-55198019 Msa1334690:CDS
GAAGAATAATGAAGAACATA+AGG 0.446087 8_4:+55199362 None:intergenic
TGCATGTAGTATTTATCAGC+TGG 0.447435 8_4:-55197677 Msa1334690:three_prime_UTR
AATTATCTGTATAAGCAAAC+GGG 0.451639 8_4:-55197802 Msa1334690:three_prime_UTR
GGCTACGTGACCAAATGTTC+CGG 0.451819 8_4:-55198298 Msa1334690:CDS
TAATTATCTGTATAAGCAAA+CGG 0.452033 8_4:-55197803 Msa1334690:three_prime_UTR
GGCGGTGGGAGATGGGTTTG+GGG 0.452723 8_4:+55199816 None:intergenic
AAAAGCTTCCCTAGCAGGAT+TGG 0.453043 8_4:+55198093 None:intergenic
TGGTTGAAGAAGGGGATTTG+AGG 0.453345 8_4:-55198195 Msa1334690:CDS
AGATATATATAACTAACATA+AGG 0.453444 8_4:+55197623 None:intergenic
AAGTGAGGGAGTGAGGAATG+AGG 0.454571 8_4:+55199926 None:intergenic
GGGAAGAGGATGGTTGAAGA+AGG 0.458022 8_4:-55198205 Msa1334690:CDS
GTCATCGGCGGTGGTCCAGC+AGG 0.459749 8_4:-55199728 Msa1334690:CDS
GATGGGAAAACTGGTGGGGT+TGG 0.460324 8_4:-55199335 Msa1334690:CDS
GGAAGAGGATGGTTGAAGAA+GGG 0.461222 8_4:-55198204 Msa1334690:CDS
AATTTGCGGCGGTGGGAGAT+GGG 0.462248 8_4:+55199809 None:intergenic
AACCTCCGTGTCGCTGTCAT+CGG 0.466562 8_4:-55199743 Msa1334690:CDS
AGAAATGGGACAAGACATAT+TGG 0.468367 8_4:-55198162 Msa1334690:CDS
CGGAGAAATCATCTTCATCT+TGG 0.469756 8_4:+55199553 None:intergenic
AATGGAGCGAATATTATCAA+TGG 0.469785 8_4:-55199425 Msa1334690:CDS
GGAGATGGGTTTGGGGCGGT+AGG 0.470092 8_4:+55199823 None:intergenic
TGAGGGAAAGTGAGGGAGTG+AGG 0.480797 8_4:+55199919 None:intergenic
TTGTGCAGGGTTCGGCGAAT+GGG 0.480844 8_4:-55198225 Msa1334690:CDS
GGAGGCCGAGGAAGGATTTG+AGG 0.485174 8_4:+55199876 None:intergenic
AATGGAGCTCATGGTGATTG+AGG 0.485588 8_4:+55199901 None:intergenic
TGCGAAATAGATTCCTTCTC+CGG 0.486163 8_4:+55198279 None:intergenic
GTGCGCAGAGGCAATTGTGC+AGG 0.486232 8_4:-55198239 Msa1334690:CDS
TGACAGCGACACGGAGGTTA+CGG 0.488882 8_4:+55199747 None:intergenic
ATTGTGCAGGGTTCGGCGAA+TGG 0.489244 8_4:-55198226 Msa1334690:CDS
CAGCAACGACGGTGAATTTG+CGG 0.490011 8_4:+55199795 None:intergenic
TTTATGGCCGTTGGATGGAT+GGG 0.493575 8_4:+55200013 None:intergenic
AATTAATATGTATACAGGTC+AGG 0.493949 8_4:+55197873 None:intergenic
ACCCTCCCTGACAATCTTCG+TGG 0.495621 8_4:+55198343 None:intergenic
TTTCTCCTGACTTCTATGGT+TGG 0.498525 8_4:-55198528 Msa1334690:CDS
GTGAGGAAATGCGGAGGCCG+AGG 0.498992 8_4:+55199864 None:intergenic
GAAGAGGATGGTTGAAGAAG+GGG 0.499187 8_4:-55198203 Msa1334690:CDS
TCCCAATATAGACTGGTGAT+TGG 0.500678 8_4:-55197763 Msa1334690:three_prime_UTR
GATATATATAACTAACATAA+GGG 0.500690 8_4:+55197624 None:intergenic
TTGTGGGAGTTTATGGCCGT+TGG 0.501989 8_4:+55200004 None:intergenic
GCCATTCCTCTCTGCATGGT+TGG 0.506344 8_4:-55199617 Msa1334690:CDS
TCGAATGTCGCCGTCGACAT+TGG 0.508885 8_4:-55199530 Msa1334690:CDS
ATGGAGCGAATATTATCAAT+GGG 0.512254 8_4:-55199424 Msa1334690:CDS
CATGCAATCCCAATATAGAC+TGG 0.523727 8_4:-55197770 Msa1334690:three_prime_UTR
CGTGTCGCTGTCATCGGCGG+TGG 0.524419 8_4:-55199737 Msa1334690:CDS
GAGGCCGAGGAAGGATTTGA+GGG 0.525450 8_4:+55199877 None:intergenic
ATCTATTTCGCAGCCAAGAG+TGG 0.527822 8_4:-55198268 Msa1334690:CDS
ATGGAGCTCATGGTGATTGA+GGG 0.528894 8_4:+55199902 None:intergenic
TGTTGTGCCTGGGAGTCCAT+TGG 0.531085 8_4:-55198008 Msa1334690:CDS
GATGCTGTTATTGGTGCTGA+TGG 0.532399 8_4:-55199290 Msa1334690:CDS
GACCATGTTGCTGTCGGCAC+CGG 0.535481 8_4:-55198490 Msa1334690:CDS
AGTTGGCTATCAACACCATT+GGG 0.537596 8_4:-55197976 Msa1334690:CDS
CTTATGATGGGAAAACTGGT+GGG 0.540873 8_4:-55199340 Msa1334690:CDS
GCAGCAGAAACACTAGCAAA+AGG 0.541139 8_4:-55199698 Msa1334690:CDS
TTTACAGGTCCAATCCTGCT+AGG 0.541349 8_4:-55198102 Msa1334690:CDS
GACTTATTACGAGGATCTTG+CGG 0.541408 8_4:-55198572 Msa1334690:CDS
AACACCCAACCATAGAAGTC+AGG 0.543879 8_4:+55198523 None:intergenic
CTCCGTGTCGCTGTCATCGG+CGG 0.543928 8_4:-55199740 Msa1334690:CDS
ATATCCTCCAATGGACTCCC+AGG 0.545006 8_4:+55198001 None:intergenic
TCTTATGATGGGAAAACTGG+TGG 0.545852 8_4:-55199341 Msa1334690:CDS
ATATCCAAAACCTTATAAGT+AGG 0.547753 8_4:+55198139 None:intergenic
GTCTCATGAGTATATTGGTA+TGG 0.549402 8_4:-55199495 Msa1334690:CDS
TGGCCGTTGGATGGATGGGA+TGG 0.552388 8_4:+55200017 None:intergenic
GGGAGTTTATGGCCGTTGGA+TGG 0.554741 8_4:+55200008 None:intergenic
GTGACCAAATGTTCCGGAGA+AGG 0.556989 8_4:-55198292 Msa1334690:CDS
TGGAGAGTTGAGATTTCATG+TGG 0.557521 8_4:+55200037 None:intergenic
GAATTGGGTGGTTTCTGGTG+AGG 0.558563 8_4:+55199847 None:intergenic
TTACAGGTCCAATCCTGCTA+GGG 0.562987 8_4:-55198101 Msa1334690:CDS
AGGGTTCGGCGAATGGGAAG+AGG 0.563143 8_4:-55198219 Msa1334690:CDS
AAGTTGGCTATCAACACCAT+TGG 0.564334 8_4:-55197977 Msa1334690:CDS
CTGGTGATTGGAGCATAGCA+GGG 0.564836 8_4:-55197751 Msa1334690:three_prime_UTR
TTTGAGGGCAATGGAGCTCA+TGG 0.565078 8_4:+55199892 None:intergenic
GGATCTTGCGGAGATGTATG+TGG 0.566935 8_4:-55198560 Msa1334690:CDS
AGGAGCCATTCCTCTCTGCA+TGG 0.568282 8_4:-55199621 Msa1334690:CDS
GACGGTGAATTTGCGGCGGT+GGG 0.569026 8_4:+55199802 None:intergenic
GAGGAAGGATTTGAGGGCAA+TGG 0.569467 8_4:+55199883 None:intergenic
GTGAGGGAGTGAGGAATGAG+GGG 0.573874 8_4:+55199928 None:intergenic
TCCATTGGAGGATATCAAGT+TGG 0.576911 8_4:-55197993 Msa1334690:CDS
CACCGGAACTGTGACACACA+AGG 0.577442 8_4:-55198473 Msa1334690:CDS
GTTGCTAAGTCTATTGATGC+TGG 0.578907 8_4:-55199254 Msa1334690:CDS
ATGTCGCCGTCGACATTGGT+AGG 0.579219 8_4:-55199526 Msa1334690:CDS
TGGTTTCTGGTGAGGAAATG+CGG 0.579219 8_4:+55199855 None:intergenic
ATGTCGACGGCGACATTCGA+CGG 0.582173 8_4:+55199533 None:intergenic
ATCGGCGGTGGTCCAGCAGG+TGG 0.582561 8_4:-55199725 Msa1334690:CDS
ACCCTATACCAGAACATCCA+AGG 0.583597 8_4:-55198366 Msa1334690:CDS
ATTGCCCTCAAATCCTTCCT+CGG 0.585608 8_4:-55199881 Msa1334690:CDS
GCCACGAAGATTGTCAGGGA+GGG 0.591898 8_4:-55198344 Msa1334690:CDS
GGTGGGAGATGGGTTTGGGG+CGG 0.594547 8_4:+55199819 None:intergenic
TTATCTTAGAAATAGGGCTA+AGG 0.596386 8_4:-55199450 Msa1334690:CDS
TCTATTTCGCAGCCAAGAGT+GGG 0.596561 8_4:-55198267 Msa1334690:CDS
CGGCGGTCAATGATGTCTAG+TGG 0.598418 8_4:+55199581 None:intergenic
GGAAATGCGGAGGCCGAGGA+AGG 0.607962 8_4:+55199868 None:intergenic
TTATGATGGGAAAACTGGTG+GGG 0.607967 8_4:-55199339 Msa1334690:CDS
GATTCTTAATGATCTTACAA+AGG 0.611585 8_4:-55197546 Msa1334690:three_prime_UTR
TGTACAAGACTGTTGTGCCT+GGG 0.612477 8_4:-55198018 Msa1334690:CDS
ATGGTGATTGAGGGAAAGTG+AGG 0.615134 8_4:+55199911 None:intergenic
TTAGGGCTAATGCTCTAAGG+AGG 0.617977 8_4:-55197946 Msa1334690:CDS
TGCGCAGAGGCAATTGTGCA+GGG 0.620081 8_4:-55198238 Msa1334690:CDS
GGTCAATGATGTCTAGTGGA+AGG 0.620194 8_4:+55199585 None:intergenic
GCCAACTTGATATCCTCCAA+TGG 0.620794 8_4:+55197992 None:intergenic
CACCGCCGATGACAGCGACA+CGG 0.621764 8_4:+55199738 None:intergenic
ACCAACCATGCAGAGAGGAA+TGG 0.622279 8_4:+55199616 None:intergenic
AGAGGAATGGCTCCTCCACA+TGG 0.622376 8_4:+55199629 None:intergenic
TTCGGCGAATGGGAAGAGGA+TGG 0.627116 8_4:-55198215 Msa1334690:CDS
TTCCGGTGCCGACAGCAACA+TGG 0.628007 8_4:+55198488 None:intergenic
TAATGCTCTAAGGAGGGAGA+TGG 0.631923 8_4:-55197939 Msa1334690:CDS
AGCCCTAACCAAGCTCCCAA+TGG 0.636991 8_4:+55197961 None:intergenic
GCAGAAACACTAGCAAAAGG+TGG 0.639267 8_4:-55199695 Msa1334690:CDS
TAGGGCTAATGCTCTAAGGA+GGG 0.641569 8_4:-55197945 Msa1334690:CDS
TCTCCATCCCATCCATCCAA+CGG 0.643715 8_4:-55200020 Msa1334690:five_prime_UTR
ATTTCGCAGCCAAGAGTGGG+AGG 0.644515 8_4:-55198264 Msa1334690:CDS
TCATCTTCATCTTGGTAACA+CGG 0.646038 8_4:+55199561 None:intergenic
GCTGGTTGCTGCAGCAACGA+CGG 0.647516 8_4:+55199784 None:intergenic
TGGTGATTGAGGGAAAGTGA+GGG 0.648485 8_4:+55199912 None:intergenic
AGAAATTCCAACTAGCAACA+AGG 0.653031 8_4:-55198441 Msa1334690:CDS
GGGCAAGATTATCCGTGTGG+AGG 0.655629 8_4:-55198392 Msa1334690:CDS
GCCGAGGACAAGATCTTAGG+GGG 0.656426 8_4:-55198412 Msa1334690:CDS
ATGAGTATATTGGTATGGTG+AGG 0.657171 8_4:-55199490 Msa1334690:CDS
ACCGGAACTGTGACACACAA+GGG 0.664074 8_4:-55198472 Msa1334690:CDS
GACAACTGCAAACCATGTGG+AGG 0.664445 8_4:-55199641 Msa1334690:CDS
GGCCACGAAGATTGTCAGGG+AGG 0.664448 8_4:-55198345 Msa1334690:CDS
AGCAACAAGGAAAAGAGCCG+AGG 0.665901 8_4:-55198428 Msa1334690:CDS
CAAGGCCACGAAGATTGTCA+GGG 0.673953 8_4:-55198348 Msa1334690:CDS
AAGTGTCCTACCAATGTCGA+CGG 0.676648 8_4:+55199520 None:intergenic
GATCTTGCGGAGATGTATGT+GGG 0.677527 8_4:-55198559 Msa1334690:CDS
GTATAGGGTGAGCCTCCACA+CGG 0.681936 8_4:+55198380 None:intergenic
GAGTGGGAGGATGTGCGCAG+AGG 0.683072 8_4:-55198251 Msa1334690:CDS
CAACGACGGTGAATTTGCGG+CGG 0.685263 8_4:+55199798 None:intergenic
AAATGTGACCATGTTGCTGT+CGG 0.686456 8_4:-55198496 Msa1334690:CDS
ATGGACAACTGCAAACCATG+TGG 0.691065 8_4:-55199644 Msa1334690:CDS
TATTGGTATGGTGAGGCGTG+AGG 0.696798 8_4:-55199483 Msa1334690:CDS
AACTCACCAACCATGCAGAG+AGG 0.710486 8_4:+55199611 None:intergenic
AGCCGAGGACAAGATCTTAG+GGG 0.711384 8_4:-55198413 Msa1334690:CDS
GGGGCGGTAGGAGAATTGGG+TGG 0.719493 8_4:+55199835 None:intergenic
CGCCGATGACAGCGACACGG+AGG 0.724003 8_4:+55199741 None:intergenic
TGACAAAATGACTTATTACG+AGG 0.726774 8_4:-55198581 Msa1334690:CDS
TTTCTGGTGAGGAAATGCGG+AGG 0.741612 8_4:+55199858 None:intergenic
TCTTCATCTTGGTAACACGG+CGG 0.792919 8_4:+55199564 None:intergenic
ACAGTGATGAATGACTATTG+TGG 0.842544 8_4:+55197899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATAAATTAATATGTATAC+AGG + chr8_4:55199623-55199642 None:intergenic 15.0%
!! GATATATATAACTAACATAA+GGG + chr8_4:55199867-55199886 None:intergenic 15.0%
!! AGATATATATAACTAACATA+AGG + chr8_4:55199868-55199887 None:intergenic 15.0%
!! TTAAATATACCAATGATAAT+TGG - chr8_4:55199906-55199925 Msa1334690:exon 15.0%
!!! TTGATGATTATCTTAGAAAT+AGG - chr8_4:55198031-55198050 Msa1334690:CDS 20.0%
!! TGATGATTATCTTAGAAATA+GGG - chr8_4:55198032-55198051 Msa1334690:CDS 20.0%
!! TTCATTATTCTTCTTATGAT+GGG - chr8_4:55198136-55198155 Msa1334690:CDS 20.0%
!! AATTGTAAGATGTAACAATT+TGG - chr8_4:55198424-55198443 Msa1334690:CDS 20.0%
!!! ACAATTTGGTCTTAAAATTA+AGG - chr8_4:55198438-55198457 Msa1334690:CDS 20.0%
!!! CAATTTGGTCTTAAAATTAA+GGG - chr8_4:55198439-55198458 Msa1334690:CDS 20.0%
!!! TCACATTAGTGTTATTATTT+TGG - chr8_4:55198482-55198501 Msa1334690:CDS 20.0%
!!! TCAAGTATTGTTCAATTTAA+GGG + chr8_4:55198647-55198666 None:intergenic 20.0%
!!! ATCAAGTATTGTTCAATTTA+AGG + chr8_4:55198648-55198667 None:intergenic 20.0%
!! TAATTATCTGTATAAGCAAA+CGG - chr8_4:55199685-55199704 Msa1334690:CDS 20.0%
!!! GAATTTATGAGATTTGATTT+AGG - chr8_4:55199833-55199852 Msa1334690:CDS 20.0%
!!! TGTCAATGTAAGAATTTTAT+CGG - chr8_4:55199983-55200002 Msa1334690:five_prime_UTR 20.0%
!! ATTTCATGTGGATAGATTTT+GGG + chr8_4:55197442-55197461 None:intergenic 25.0%
! GAAGAATAATGAAGAACATA+AGG + chr8_4:55198129-55198148 None:intergenic 25.0%
! CTTCATTATTCTTCTTATGA+TGG - chr8_4:55198135-55198154 Msa1334690:CDS 25.0%
!! TTCTGTGAATTAGCAATTTT+TGG - chr8_4:55198326-55198345 Msa1334690:CDS 25.0%
! ATATGAAACCTTCCTAAATA+CGG + chr8_4:55198545-55198564 None:intergenic 25.0%
!!! CAAATTAGTCTTGAAATAGT+AGG + chr8_4:55198742-55198761 None:intergenic 25.0%
! CTACTATTTCAAGACTAATT+TGG - chr8_4:55198740-55198759 Msa1334690:intron 25.0%
!!! ATGTGGTTTCTATTTTTGAA+AGG - chr8_4:55198812-55198831 Msa1334690:intron 25.0%
!! ATTAGCATGTTTCATTTTGA+TGG - chr8_4:55198846-55198865 Msa1334690:intron 25.0%
!!! TAATAAGTCATTTTGTCATC+CGG + chr8_4:55198905-55198924 None:intergenic 25.0%
! ATATCCAAAACCTTATAAGT+AGG + chr8_4:55199352-55199371 None:intergenic 25.0%
! AATTAATATGTATACAGGTC+AGG + chr8_4:55199618-55199637 None:intergenic 25.0%
! AATTATCTGTATAAGCAAAC+GGG - chr8_4:55199686-55199705 Msa1334690:CDS 25.0%
! GATTCTTAATGATCTTACAA+AGG - chr8_4:55199942-55199961 Msa1334690:five_prime_UTR 25.0%
! GATTTCATGTGGATAGATTT+TGG + chr8_4:55197443-55197462 None:intergenic 30.0%
!!! TTTTATTGGAATGGTGGATA+TGG + chr8_4:55197518-55197537 None:intergenic 30.0%
!! TTTGTGGTGATGTGTTTTAT+TGG + chr8_4:55197532-55197551 None:intergenic 30.0%
CTTAAGTCTCATGAGTATAT+TGG - chr8_4:55197988-55198007 Msa1334690:CDS 30.0%
TTATCTTAGAAATAGGGCTA+AGG - chr8_4:55198038-55198057 Msa1334690:CDS 30.0%
AATGGAGCGAATATTATCAA+TGG - chr8_4:55198063-55198082 Msa1334690:CDS 30.0%
ATGGAGCGAATATTATCAAT+GGG - chr8_4:55198064-55198083 Msa1334690:CDS 30.0%
!!! CAATGGGTTGTTTTTGAAAA+TGG - chr8_4:55198080-55198099 Msa1334690:CDS 30.0%
TGAATATGCTATTGCATTTC+AGG - chr8_4:55198263-55198282 Msa1334690:CDS 30.0%
AGGGTAAATACTCTATAACA+TGG - chr8_4:55198458-55198477 Msa1334690:CDS 30.0%
! TGAGTTTGAAATCCGTATTT+AGG - chr8_4:55198530-55198549 Msa1334690:CDS 30.0%
! TTTGAAATCCGTATTTAGGA+AGG - chr8_4:55198534-55198553 Msa1334690:CDS 30.0%
AATGAGACCAATGACAAAAT+TGG + chr8_4:55198692-55198711 None:intergenic 30.0%
TTGGTCTCATTTACTCATTT+AGG - chr8_4:55198701-55198720 Msa1334690:intron 30.0%
TGGTCTCATTTACTCATTTA+GGG - chr8_4:55198702-55198721 Msa1334690:intron 30.0%
AATAGTAGGATTAGACAACT+TGG + chr8_4:55198728-55198747 None:intergenic 30.0%
! TAGTTCATTGTGGTGTTTTA+TGG - chr8_4:55198784-55198803 Msa1334690:intron 30.0%
! GGTGTTTTATGGTTTATATG+TGG - chr8_4:55198795-55198814 Msa1334690:intron 30.0%
!! CATGTTTCATTTTGATGGTA+TGG - chr8_4:55198851-55198870 Msa1334690:intron 30.0%
ATGGTATGGTTAAATTTCTC+AGG - chr8_4:55198865-55198884 Msa1334690:intron 30.0%
!! AATAAGTCATTTTGTCATCC+GGG + chr8_4:55198904-55198923 None:intergenic 30.0%
TGACAAAATGACTTATTACG+AGG - chr8_4:55198907-55198926 Msa1334690:intron 30.0%
TGAGGAAATATTTGGAGAAA+TGG - chr8_4:55199311-55199330 Msa1334690:CDS 30.0%
GAGGAAATATTTGGAGAAAT+GGG - chr8_4:55199312-55199331 Msa1334690:CDS 30.0%
TCAACTAGACCAATTATCAT+TGG + chr8_4:55199918-55199937 None:intergenic 30.0%
! GATAATTGGTCTAGTTGATA+AGG - chr8_4:55199920-55199939 Msa1334690:five_prime_UTR 30.0%
! CAATGTAAGAATTTTATCGG+TGG - chr8_4:55199986-55200005 Msa1334690:five_prime_UTR 30.0%
! TTGTGATTTGTGGGAGTTTA+TGG + chr8_4:55197494-55197513 None:intergenic 35.0%
! GGATATGGTTTGTGATTTGT+GGG + chr8_4:55197503-55197522 None:intergenic 35.0%
! TGGATATGGTTTGTGATTTG+TGG + chr8_4:55197504-55197523 None:intergenic 35.0%
!! GATGTGTTTTATTGGAATGG+TGG + chr8_4:55197524-55197543 None:intergenic 35.0%
!! GGTGATGTGTTTTATTGGAA+TGG + chr8_4:55197527-55197546 None:intergenic 35.0%
!! ATGAGGGGTTTGAAATTTTG+TGG + chr8_4:55197548-55197567 None:intergenic 35.0%
! TCATCTTCATCTTGGTAACA+CGG + chr8_4:55197930-55197949 None:intergenic 35.0%
GTCTCATGAGTATATTGGTA+TGG - chr8_4:55197993-55198012 Msa1334690:CDS 35.0%
ATGAGTATATTGGTATGGTG+AGG - chr8_4:55197998-55198017 Msa1334690:CDS 35.0%
AGAAATAGGGCTAAGGAAAA+TGG - chr8_4:55198045-55198064 Msa1334690:CDS 35.0%
!! TAAGGCGCATTCTTTTGTTT+AGG + chr8_4:55198111-55198130 None:intergenic 35.0%
! TCTTCTTATGATGGGAAAAC+TGG - chr8_4:55198144-55198163 Msa1334690:CDS 35.0%
!! GGTTGGTGAAAAAACTACTT+TGG - chr8_4:55198170-55198189 Msa1334690:CDS 35.0%
!! TTGGAAGTTGATGCTGTTAT+TGG - chr8_4:55198189-55198208 Msa1334690:CDS 35.0%
ATGTCAACCGAGTCTTTAAT+CGG - chr8_4:55198355-55198374 Msa1334690:CDS 35.0%
!! TTTATAGTCTTGTCTTGTGC+AGG - chr8_4:55198586-55198605 Msa1334690:CDS 35.0%
!! TTATAGTCTTGTCTTGTGCA+GGG - chr8_4:55198587-55198606 Msa1334690:CDS 35.0%
ACAAAATTGGCATGCACAAA+AGG + chr8_4:55198679-55198698 None:intergenic 35.0%
GACTTAGATGTAGTTCATTG+TGG - chr8_4:55198774-55198793 Msa1334690:intron 35.0%
ATGGTTAAATTTCTCAGGAG+AGG - chr8_4:55198870-55198889 Msa1334690:intron 35.0%
AGAAATTCCAACTAGCAACA+AGG - chr8_4:55199047-55199066 Msa1334690:intron 35.0%
AGGGGATTTGAGGAAATATT+TGG - chr8_4:55199303-55199322 Msa1334690:CDS 35.0%
AGAAATGGGACAAGACATAT+TGG - chr8_4:55199326-55199345 Msa1334690:CDS 35.0%
! GACATATTGGCCTACTTATA+AGG - chr8_4:55199339-55199358 Msa1334690:CDS 35.0%
! TTGGCCTACTTATAAGGTTT+TGG - chr8_4:55199345-55199364 Msa1334690:CDS 35.0%
!!! GGTTTTGGATATTCTTCAGA+AGG - chr8_4:55199360-55199379 Msa1334690:CDS 35.0%
!!! TTCTTCAGAAGGTGTTTTAC+AGG - chr8_4:55199371-55199390 Msa1334690:CDS 35.0%
ACAGTGATGAATGACTATTG+TGG + chr8_4:55199592-55199611 None:intergenic 35.0%
TCCAATCACCAGTCTATATT+GGG + chr8_4:55199729-55199748 None:intergenic 35.0%
TGCATGTAGTATTTATCAGC+TGG - chr8_4:55199811-55199830 Msa1334690:CDS 35.0%
TGGAGAGTTGAGATTTCATG+TGG + chr8_4:55197454-55197473 None:intergenic 40.0%
! CATTTTACGTTCGATGAGGA+AGG + chr8_4:55197827-55197846 None:intergenic 40.0%
CTTCCTCATCGAACGTAAAA+TGG - chr8_4:55197825-55197844 Msa1334690:three_prime_UTR 40.0%
! TGTCCATTTTACGTTCGATG+AGG + chr8_4:55197831-55197850 None:intergenic 40.0%
CGGAGAAATCATCTTCATCT+TGG + chr8_4:55197938-55197957 None:intergenic 40.0%
! TCTTATGATGGGAAAACTGG+TGG - chr8_4:55198147-55198166 Msa1334690:CDS 40.0%
! CTTATGATGGGAAAACTGGT+GGG - chr8_4:55198148-55198167 Msa1334690:CDS 40.0%
! TTATGATGGGAAAACTGGTG+GGG - chr8_4:55198149-55198168 Msa1334690:CDS 40.0%
GTTGCTAAGTCTATTGATGC+TGG - chr8_4:55198234-55198253 Msa1334690:CDS 40.0%
TGTCAACCGAGTCTTTAATC+GGG - chr8_4:55198356-55198375 Msa1334690:CDS 40.0%
CTAGAACCCGATTAAAGACT+CGG + chr8_4:55198365-55198384 None:intergenic 40.0%
! GTGCATGCCAATTTTGTCAT+TGG - chr8_4:55198682-55198701 Msa1334690:intron 40.0%
TCAGGAGAGGATAAAAATCC+CGG - chr8_4:55198883-55198902 Msa1334690:intron 40.0%
GACTTATTACGAGGATCTTG+CGG - chr8_4:55198916-55198935 Msa1334690:intron 40.0%
TTTCTCCTGACTTCTATGGT+TGG - chr8_4:55198960-55198979 Msa1334690:intron 40.0%
TTCTCCTGACTTCTATGGTT+GGG - chr8_4:55198961-55198980 Msa1334690:intron 40.0%
! CAGCAACATGGTCACATTTT+GGG + chr8_4:55198991-55199010 None:intergenic 40.0%
! ACAGCAACATGGTCACATTT+TGG + chr8_4:55198992-55199011 None:intergenic 40.0%
AAATGTGACCATGTTGCTGT+CGG - chr8_4:55198992-55199011 Msa1334690:intron 40.0%
! CTCTTTTCCTTGTTGCTAGT+TGG + chr8_4:55199057-55199076 None:intergenic 40.0%
TGCGAAATAGATTCCTTCTC+CGG + chr8_4:55199212-55199231 None:intergenic 40.0%
TCCATTGGAGGATATCAAGT+TGG - chr8_4:55199495-55199514 Msa1334690:CDS 40.0%
AAGTTGGCTATCAACACCAT+TGG - chr8_4:55199511-55199530 Msa1334690:CDS 40.0%
AGTTGGCTATCAACACCATT+GGG - chr8_4:55199512-55199531 Msa1334690:CDS 40.0%
CATGCAATCCCAATATAGAC+TGG - chr8_4:55199718-55199737 Msa1334690:CDS 40.0%
TCCCAATATAGACTGGTGAT+TGG - chr8_4:55199725-55199744 Msa1334690:CDS 40.0%
CTCCAATCACCAGTCTATAT+TGG + chr8_4:55199730-55199749 None:intergenic 40.0%
TTTATGGCCGTTGGATGGAT+GGG + chr8_4:55197478-55197497 None:intergenic 45.0%
TGGTGATTGAGGGAAAGTGA+GGG + chr8_4:55197579-55197598 None:intergenic 45.0%
ATGGTGATTGAGGGAAAGTG+AGG + chr8_4:55197580-55197599 None:intergenic 45.0%
ATGGAGCTCATGGTGATTGA+GGG + chr8_4:55197589-55197608 None:intergenic 45.0%
AATGGAGCTCATGGTGATTG+AGG + chr8_4:55197590-55197609 None:intergenic 45.0%
ATTGCCCTCAAATCCTTCCT+CGG - chr8_4:55197607-55197626 Msa1334690:three_prime_UTR 45.0%
!! TGGTTTCTGGTGAGGAAATG+CGG + chr8_4:55197636-55197655 None:intergenic 45.0%
TAGGAGAATTGGGTGGTTTC+TGG + chr8_4:55197649-55197668 None:intergenic 45.0%
!!! GGTTACGGCCATCGATTTTT+GGG + chr8_4:55197729-55197748 None:intergenic 45.0%
!!! AGGTTACGGCCATCGATTTT+TGG + chr8_4:55197730-55197749 None:intergenic 45.0%
GCAGCAGAAACACTAGCAAA+AGG - chr8_4:55197790-55197809 Msa1334690:three_prime_UTR 45.0%
GCAGAAACACTAGCAAAAGG+TGG - chr8_4:55197793-55197812 Msa1334690:three_prime_UTR 45.0%
ATGGACAACTGCAAACCATG+TGG - chr8_4:55197844-55197863 Msa1334690:three_prime_UTR 45.0%
GGTCAATGATGTCTAGTGGA+AGG + chr8_4:55197906-55197925 None:intergenic 45.0%
! TCTTCATCTTGGTAACACGG+CGG + chr8_4:55197927-55197946 None:intergenic 45.0%
AAGTGTCCTACCAATGTCGA+CGG + chr8_4:55197971-55197990 None:intergenic 45.0%
!! GATGCTGTTATTGGTGCTGA+TGG - chr8_4:55198198-55198217 Msa1334690:CDS 45.0%
CGAGTCTTTAATCGGGTTCT+AGG - chr8_4:55198363-55198382 Msa1334690:CDS 45.0%
GATCTTGCGGAGATGTATGT+GGG - chr8_4:55198929-55198948 Msa1334690:intron 45.0%
GACGTTTCTCCTGACTTCTA+TGG - chr8_4:55198956-55198975 Msa1334690:intron 45.0%
AACACCCAACCATAGAAGTC+AGG + chr8_4:55198968-55198987 None:intergenic 45.0%
ACCCTATACCAGAACATCCA+AGG - chr8_4:55199122-55199141 Msa1334690:intron 45.0%
GCCTTGGATGTTCTGGTATA+GGG + chr8_4:55199126-55199145 None:intergenic 45.0%
GATTCCTTCTCCGGAACATT+TGG + chr8_4:55199203-55199222 None:intergenic 45.0%
ATCTATTTCGCAGCCAAGAG+TGG - chr8_4:55199220-55199239 Msa1334690:intron 45.0%
TCTATTTCGCAGCCAAGAGT+GGG - chr8_4:55199221-55199240 Msa1334690:intron 45.0%
GGAAGAGGATGGTTGAAGAA+GGG - chr8_4:55199284-55199303 Msa1334690:CDS 45.0%
GAAGAGGATGGTTGAAGAAG+GGG - chr8_4:55199285-55199304 Msa1334690:CDS 45.0%
TGGTTGAAGAAGGGGATTTG+AGG - chr8_4:55199293-55199312 Msa1334690:CDS 45.0%
TTTACAGGTCCAATCCTGCT+AGG - chr8_4:55199386-55199405 Msa1334690:CDS 45.0%
TTACAGGTCCAATCCTGCTA+GGG - chr8_4:55199387-55199406 Msa1334690:CDS 45.0%
AAAAGCTTCCCTAGCAGGAT+TGG + chr8_4:55199398-55199417 None:intergenic 45.0%
TCAACAAAAGCTTCCCTAGC+AGG + chr8_4:55199403-55199422 None:intergenic 45.0%
TGTACAAGACTGTTGTGCCT+GGG - chr8_4:55199470-55199489 Msa1334690:CDS 45.0%
GCCAACTTGATATCCTCCAA+TGG + chr8_4:55199499-55199518 None:intergenic 45.0%
TATCAACACCATTGGGAGCT+TGG - chr8_4:55199519-55199538 Msa1334690:CDS 45.0%
TGGTTAGGGCTAATGCTCTA+AGG - chr8_4:55199539-55199558 Msa1334690:CDS 45.0%
!! TTAGGGCTAATGCTCTAAGG+AGG - chr8_4:55199542-55199561 Msa1334690:CDS 45.0%
!! TAGGGCTAATGCTCTAAGGA+GGG - chr8_4:55199543-55199562 Msa1334690:CDS 45.0%
!! TAATGCTCTAAGGAGGGAGA+TGG - chr8_4:55199549-55199568 Msa1334690:CDS 45.0%
!!! TTACAATTTTAAAATTAAAT+TGG + chr8_4:55198412-55198431 None:intergenic 5.0%
TCTCCATCCCATCCATCCAA+CGG - chr8_4:55197468-55197487 Msa1334690:three_prime_UTR 50.0%
GTTTATGGCCGTTGGATGGA+TGG + chr8_4:55197479-55197498 None:intergenic 50.0%
TTGTGGGAGTTTATGGCCGT+TGG + chr8_4:55197487-55197506 None:intergenic 50.0%
AGTGAGGGAGTGAGGAATGA+GGG + chr8_4:55197564-55197583 None:intergenic 50.0%
AAGTGAGGGAGTGAGGAATG+AGG + chr8_4:55197565-55197584 None:intergenic 50.0%
TTTGAGGGCAATGGAGCTCA+TGG + chr8_4:55197599-55197618 None:intergenic 50.0%
GAGGAAGGATTTGAGGGCAA+TGG + chr8_4:55197608-55197627 None:intergenic 50.0%
! TTTCTGGTGAGGAAATGCGG+AGG + chr8_4:55197633-55197652 None:intergenic 50.0%
!! GAATTGGGTGGTTTCTGGTG+AGG + chr8_4:55197644-55197663 None:intergenic 50.0%
! TTTGGGGCGGTAGGAGAATT+GGG + chr8_4:55197659-55197678 None:intergenic 50.0%
CAGCAACGACGGTGAATTTG+CGG + chr8_4:55197696-55197715 None:intergenic 50.0%
GCAACCAGCCCAAAAATCGA+TGG - chr8_4:55197718-55197737 Msa1334690:three_prime_UTR 50.0%
GACAACTGCAAACCATGTGG+AGG - chr8_4:55197847-55197866 Msa1334690:three_prime_UTR 50.0%
ACCAACCATGCAGAGAGGAA+TGG + chr8_4:55197875-55197894 None:intergenic 50.0%
AACTCACCAACCATGCAGAG+AGG + chr8_4:55197880-55197899 None:intergenic 50.0%
TATTGGTATGGTGAGGCGTG+AGG - chr8_4:55198005-55198024 Msa1334690:CDS 50.0%
GGATCTTGCGGAGATGTATG+TGG - chr8_4:55198928-55198947 Msa1334690:intron 50.0%
ACCGGAACTGTGACACACAA+GGG - chr8_4:55199016-55199035 Msa1334690:intron 50.0%
TCCCTTGTGTGTCACAGTTC+CGG + chr8_4:55199020-55199039 None:intergenic 50.0%
AGCAACAAGGAAAAGAGCCG+AGG - chr8_4:55199060-55199079 Msa1334690:intron 50.0%
AGAGCCGAGGACAAGATCTT+AGG - chr8_4:55199073-55199092 Msa1334690:intron 50.0%
GAGCCGAGGACAAGATCTTA+GGG - chr8_4:55199074-55199093 Msa1334690:intron 50.0%
AGCCGAGGACAAGATCTTAG+GGG - chr8_4:55199075-55199094 Msa1334690:intron 50.0%
GGCCTTGGATGTTCTGGTAT+AGG + chr8_4:55199127-55199146 None:intergenic 50.0%
CAAGGCCACGAAGATTGTCA+GGG - chr8_4:55199140-55199159 Msa1334690:intron 50.0%
GGCTACGTGACCAAATGTTC+CGG - chr8_4:55199190-55199209 Msa1334690:intron 50.0%
GTGACCAAATGTTCCGGAGA+AGG - chr8_4:55199196-55199215 Msa1334690:intron 50.0%
AGAGGCAATTGTGCAGGGTT+CGG - chr8_4:55199255-55199274 Msa1334690:CDS 50.0%
GGGAAGAGGATGGTTGAAGA+AGG - chr8_4:55199283-55199302 Msa1334690:CDS 50.0%
CTGTACAAGACTGTTGTGCC+TGG - chr8_4:55199469-55199488 Msa1334690:CDS 50.0%
! ATATCCTCCAATGGACTCCC+AGG + chr8_4:55199490-55199509 None:intergenic 50.0%
ACACCATTGGGAGCTTGGTT+AGG - chr8_4:55199524-55199543 Msa1334690:CDS 50.0%
CACCATTGGGAGCTTGGTTA+GGG - chr8_4:55199525-55199544 Msa1334690:CDS 50.0%
ACTGGTGATTGGAGCATAGC+AGG - chr8_4:55199736-55199755 Msa1334690:CDS 50.0%
CTGGTGATTGGAGCATAGCA+GGG - chr8_4:55199737-55199756 Msa1334690:CDS 50.0%
GGGAGTTTATGGCCGTTGGA+TGG + chr8_4:55197483-55197502 None:intergenic 55.0%
GTGAGGGAGTGAGGAATGAG+GGG + chr8_4:55197563-55197582 None:intergenic 55.0%
TGAGGGAAAGTGAGGGAGTG+AGG + chr8_4:55197572-55197591 None:intergenic 55.0%
GAGGCCGAGGAAGGATTTGA+GGG + chr8_4:55197614-55197633 None:intergenic 55.0%
! GTTTGGGGCGGTAGGAGAAT+TGG + chr8_4:55197660-55197679 None:intergenic 55.0%
AATTTGCGGCGGTGGGAGAT+GGG + chr8_4:55197682-55197701 None:intergenic 55.0%
CAACGACGGTGAATTTGCGG+CGG + chr8_4:55197693-55197712 None:intergenic 55.0%
!!! ACGGCCATCGATTTTTGGGC+TGG + chr8_4:55197725-55197744 None:intergenic 55.0%
TGACAGCGACACGGAGGTTA+CGG + chr8_4:55197744-55197763 None:intergenic 55.0%
! AACCTCCGTGTCGCTGTCAT+CGG - chr8_4:55197745-55197764 Msa1334690:three_prime_UTR 55.0%
AGAGGAATGGCTCCTCCACA+TGG + chr8_4:55197862-55197881 None:intergenic 55.0%
AGGAGCCATTCCTCTCTGCA+TGG - chr8_4:55197867-55197886 Msa1334690:three_prime_UTR 55.0%
GCCATTCCTCTCTGCATGGT+TGG - chr8_4:55197871-55197890 Msa1334690:three_prime_UTR 55.0%
CGGCGGTCAATGATGTCTAG+TGG + chr8_4:55197910-55197929 None:intergenic 55.0%
ATGTCGACGGCGACATTCGA+CGG + chr8_4:55197958-55197977 None:intergenic 55.0%
TCGAATGTCGCCGTCGACAT+TGG - chr8_4:55197958-55197977 Msa1334690:CDS 55.0%
ATGTCGCCGTCGACATTGGT+AGG - chr8_4:55197962-55197981 Msa1334690:CDS 55.0%
GATGGGAAAACTGGTGGGGT+TGG - chr8_4:55198153-55198172 Msa1334690:CDS 55.0%
CACCGGAACTGTGACACACA+AGG - chr8_4:55199015-55199034 Msa1334690:intron 55.0%
GCCGAGGACAAGATCTTAGG+GGG - chr8_4:55199076-55199095 Msa1334690:intron 55.0%
GCCCCCTAAGATCTTGTCCT+CGG + chr8_4:55199080-55199099 None:intergenic 55.0%
AGGGGGCAAGATTATCCGTG+TGG - chr8_4:55199093-55199112 Msa1334690:intron 55.0%
GGGCAAGATTATCCGTGTGG+AGG - chr8_4:55199096-55199115 Msa1334690:intron 55.0%
GTATAGGGTGAGCCTCCACA+CGG + chr8_4:55199111-55199130 None:intergenic 55.0%
! CTTCGTGGCCTTGGATGTTC+TGG + chr8_4:55199133-55199152 None:intergenic 55.0%
CCTGACAATCTTCGTGGCCT+TGG + chr8_4:55199142-55199161 None:intergenic 55.0%
CCAAGGCCACGAAGATTGTC+AGG - chr8_4:55199139-55199158 Msa1334690:intron 55.0%
GCCACGAAGATTGTCAGGGA+GGG - chr8_4:55199144-55199163 Msa1334690:intron 55.0%
ACCCTCCCTGACAATCTTCG+TGG + chr8_4:55199148-55199167 None:intergenic 55.0%
ATTTCGCAGCCAAGAGTGGG+AGG - chr8_4:55199224-55199243 Msa1334690:intron 55.0%
TGCGCAGAGGCAATTGTGCA+GGG - chr8_4:55199250-55199269 Msa1334690:CDS 55.0%
ATTGTGCAGGGTTCGGCGAA+TGG - chr8_4:55199262-55199281 Msa1334690:CDS 55.0%
TTGTGCAGGGTTCGGCGAAT+GGG - chr8_4:55199263-55199282 Msa1334690:CDS 55.0%
TTCGGCGAATGGGAAGAGGA+TGG - chr8_4:55199273-55199292 Msa1334690:CDS 55.0%
TGTTGTGCCTGGGAGTCCAT+TGG - chr8_4:55199480-55199499 Msa1334690:CDS 55.0%
AGCCCTAACCAAGCTCCCAA+TGG + chr8_4:55199530-55199549 None:intergenic 55.0%
TGGCCGTTGGATGGATGGGA+TGG + chr8_4:55197474-55197493 None:intergenic 60.0%
GGAGGCCGAGGAAGGATTTG+AGG + chr8_4:55197615-55197634 None:intergenic 60.0%
GAATTTGCGGCGGTGGGAGA+TGG + chr8_4:55197683-55197702 None:intergenic 60.0%
GACGGTGAATTTGCGGCGGT+GGG + chr8_4:55197689-55197708 None:intergenic 60.0%
GCTGGTTGCTGCAGCAACGA+CGG + chr8_4:55197707-55197726 None:intergenic 60.0%
GACCATGTTGCTGTCGGCAC+CGG - chr8_4:55198998-55199017 Msa1334690:intron 60.0%
!! TTCCGGTGCCGACAGCAACA+TGG + chr8_4:55199003-55199022 None:intergenic 60.0%
GGCCACGAAGATTGTCAGGG+AGG - chr8_4:55199143-55199162 Msa1334690:intron 60.0%
TGCGCACATCCTCCCACTCT+TGG + chr8_4:55199236-55199255 None:intergenic 60.0%
GTGCGCAGAGGCAATTGTGC+AGG - chr8_4:55199249-55199268 Msa1334690:CDS 60.0%
AGGGTTCGGCGAATGGGAAG+AGG - chr8_4:55199269-55199288 Msa1334690:CDS 60.0%
TGTGCCTGGGAGTCCATTGG+AGG - chr8_4:55199483-55199502 Msa1334690:CDS 60.0%
GGAAATGCGGAGGCCGAGGA+AGG + chr8_4:55197623-55197642 None:intergenic 65.0%
GTGAGGAAATGCGGAGGCCG+AGG + chr8_4:55197627-55197646 None:intergenic 65.0%
GGGGCGGTAGGAGAATTGGG+TGG + chr8_4:55197656-55197675 None:intergenic 65.0%
! GGAGATGGGTTTGGGGCGGT+AGG + chr8_4:55197668-55197687 None:intergenic 65.0%
! GGTGGGAGATGGGTTTGGGG+CGG + chr8_4:55197672-55197691 None:intergenic 65.0%
! GGCGGTGGGAGATGGGTTTG+GGG + chr8_4:55197675-55197694 None:intergenic 65.0%
! CGGCGGTGGGAGATGGGTTT+GGG + chr8_4:55197676-55197695 None:intergenic 65.0%
CGACGGTGAATTTGCGGCGG+TGG + chr8_4:55197690-55197709 None:intergenic 65.0%
! CTCCGTGTCGCTGTCATCGG+CGG - chr8_4:55197748-55197767 Msa1334690:three_prime_UTR 65.0%
CACCGCCGATGACAGCGACA+CGG + chr8_4:55197753-55197772 None:intergenic 65.0%
TCTGCTGCTGCACCACCTGC+TGG + chr8_4:55197778-55197797 None:intergenic 65.0%
TCAGGGAGGGTCGCGCTTGT+GGG - chr8_4:55199157-55199176 Msa1334690:intron 65.0%
GCGCTTGTGGGTGATGCTGC+TGG - chr8_4:55199169-55199188 Msa1334690:intron 65.0%
GAGTGGGAGGATGTGCGCAG+AGG - chr8_4:55199237-55199256 Msa1334690:CDS 65.0%
! GCGGCGGTGGGAGATGGGTT+TGG + chr8_4:55197677-55197696 None:intergenic 70.0%
CGCCGATGACAGCGACACGG+AGG + chr8_4:55197750-55197769 None:intergenic 70.0%
! CGTGTCGCTGTCATCGGCGG+TGG - chr8_4:55197751-55197770 Msa1334690:three_prime_UTR 70.0%
GTCATCGGCGGTGGTCCAGC+AGG - chr8_4:55197760-55197779 Msa1334690:three_prime_UTR 70.0%
ATCGGCGGTGGTCCAGCAGG+TGG - chr8_4:55197763-55197782 Msa1334690:three_prime_UTR 70.0%
GTCAGGGAGGGTCGCGCTTG+TGG - chr8_4:55199156-55199175 Msa1334690:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 55197436 55200074 55197436 ID=Msa1334690;Name=Msa1334690
chr8_4 mRNA 55197436 55200074 55197436 ID=Msa1334690-mRNA-1;Parent=Msa1334690;Name=Msa1334690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=162|1|1|1|1|1|2|486|462
chr8_4 exon 55197436 55198623 55197436 ID=Msa1334690-mRNA-1:exon:17272;Parent=Msa1334690-mRNA-1
chr8_4 exon 55199226 55200074 55199226 ID=Msa1334690-mRNA-1:exon:17271;Parent=Msa1334690-mRNA-1
chr8_4 five_prime_UTR 55199913 55200074 55199913 ID=Msa1334690-mRNA-1:five_prime_utr;Parent=Msa1334690-mRNA-1
chr8_4 CDS 55199226 55199912 55199226 ID=Msa1334690-mRNA-1:cds;Parent=Msa1334690-mRNA-1
chr8_4 CDS 55197922 55198623 55197922 ID=Msa1334690-mRNA-1:cds;Parent=Msa1334690-mRNA-1
chr8_4 three_prime_UTR 55197436 55197921 55197436 ID=Msa1334690-mRNA-1:three_prime_utr;Parent=Msa1334690-mRNA-1
Gene Sequence

>Msa1334690

ATGAGCTCCATTGCCCTCAAATCCTTCCTCGGCCTCCGCATTTCCTCACCAGAAACCACCCAATTCTCCTACCGCCCCAAACCCATCTCCCACCGCCGCAAATTCACCGTCGTTGCTGCAGCAACCAGCCCAAAAATCGATGGCCGTAACCTCCGTGTCGCTGTCATCGGCGGTGGTCCAGCAGGTGGTGCAGCAGCAGAAACACTAGCAAAAGGTGGAATAGAAACCTTCCTCATCGAACGTAAAATGGACAACTGCAAACCATGTGGAGGAGCCATTCCTCTCTGCATGGTTGGTGAGTTCGACCTTCCACTAGACATCATTGACCGCCGTGTTACCAAGATGAAGATGATTTCTCCGTCGAATGTCGCCGTCGACATTGGTAGGACACTTAAGTCTCATGAGTATATTGGTATGGTGAGGCGTGAGGTGCTTGATGATTATCTTAGAAATAGGGCTAAGGAAAATGGAGCGAATATTATCAATGGGTTGTTTTTGAAAATGGATATTCCTAAACAAAAGAATGCGCCTTATGTTCTTCATTATTCTTCTTATGATGGGAAAACTGGTGGGGTTGGTGAAAAAACTACTTTGGAAGTTGATGCTGTTATTGGTGCTGATGGAGCTAATTCTAGAGTTGCTAAGTCTATTGATGCTGGTGATTATGAATATGCTATTGCATTTCAGGAGAGGATAAAAATCCCGGATGACAAAATGACTTATTACGAGGATCTTGCGGAGATGTATGTGGGTGACGACGTTTCTCCTGACTTCTATGGTTGGGTGTTCCCAAAATGTGACCATGTTGCTGTCGGCACCGGAACTGTGACACACAAGGGAGACATCAAGAAATTCCAACTAGCAACAAGGAAAAGAGCCGAGGACAAGATCTTAGGGGGCAAGATTATCCGTGTGGAGGCTCACCCTATACCAGAACATCCAAGGCCACGAAGATTGTCAGGGAGGGTCGCGCTTGTGGGTGATGCTGCTGGCTACGTGACCAAATGTTCCGGAGAAGGAATCTATTTCGCAGCCAAGAGTGGGAGGATGTGCGCAGAGGCAATTGTGCAGGGTTCGGCGAATGGGAAGAGGATGGTTGAAGAAGGGGATTTGAGGAAATATTTGGAGAAATGGGACAAGACATATTGGCCTACTTATAAGGTTTTGGATATTCTTCAGAAGGTGTTTTACAGGTCCAATCCTGCTAGGGAAGCTTTTGTTGAAATGTGTGCTGATGAATATGTGCAGAAGATGACATTTGATAGTTATCTGTACAAGACTGTTGTGCCTGGGAGTCCATTGGAGGATATCAAGTTGGCTATCAACACCATTGGGAGCTTGGTTAGGGCTAATGCTCTAAGGAGGGAGATGGACAAACTTAATGTATGA

Protein sequence

>Msa1334690

MSSIALKSFLGLRISSPETTQFSYRPKPISHRRKFTVVAAATSPKIDGRNLRVAVIGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKSHEYIGMVRREVLDDYLRNRAKENGANIINGLFLKMDIPKQKNAPYVLHYSSYDGKTGGVGEKTTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERIKIPDDKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVQGSANGKRMVEEGDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGSPLEDIKLAINTIGSLVRANALRREMDKLNV*