AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036370 MtrunA17_Chr7g0260701 95.588 136 6 0 1 136 1 136 1.03e-83 241
Msa1036370 MtrunA17_Chr1g0184761 74.797 123 30 1 15 136 15 137 4.02e-53 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036370 AT2G30570.1 57.664 137 53 3 1 136 1 133 7.98e-44 140

Find 66 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCTTGTTTGGTGTCTT+TGG 0.223893 7_1:-72714246 Msa1036370:CDS
AGCAGATTCTTTCTTTGTTA+TGG 0.226925 7_1:-72714030 Msa1036370:three_prime_UTR
CTTGATGAGGATGAAGATTC+TGG 0.228909 7_1:-72714186 Msa1036370:CDS
TTCTAAGGTGCATATCCTTC+TGG 0.231560 7_1:+72714146 None:intergenic
TTGGTGTCTTTGGTCTTATA+TGG 0.276875 7_1:-72714236 Msa1036370:CDS
GAATCTACATTCAAGGAAAA+TGG 0.279162 7_1:-72714671 Msa1036370:exon
CTTCTTGGTTGGATCTTGTT+TGG 0.292250 7_1:-72714255 Msa1036370:CDS
GGACTTAGCAACAATCTTCT+TGG 0.299425 7_1:-72714270 Msa1036370:CDS
CTTCCAACCTTAGCTATTGA+TGG 0.334379 7_1:+72714459 None:intergenic
ACTTCACTGTGCAATTTCTA+AGG 0.337916 7_1:+72714131 None:intergenic
CAAATCAATTTGTGGGTTCA+TGG 0.342909 7_1:-72713989 Msa1036370:three_prime_UTR
GACCTGCTTCCTTGCACATC+AGG 0.343789 7_1:+72714411 None:intergenic
ATTTGCTTAATTCAGACAAA+TGG 0.346148 7_1:+72714721 None:intergenic
TAGATTCAGGTATGAGAGTA+TGG 0.356495 7_1:+72714687 None:intergenic
GAAGGAACTGGCCTTCCCTT+TGG 0.386325 7_1:-72714291 Msa1036370:CDS
TCTAAGGTGCATATCCTTCT+GGG 0.390166 7_1:+72714147 None:intergenic
GATGTATCAAATCAATTTGT+GGG 0.406541 7_1:-72713996 Msa1036370:three_prime_UTR
TCTACCAAAGCCATGGCTGC+TGG 0.411412 7_1:+72714330 None:intergenic
TGTTGAGGTGCCAGCAATAA+TGG 0.413871 7_1:+72714645 None:intergenic
AAAACTTACCAACAATGGTC+TGG 0.428853 7_1:+72714569 None:intergenic
CATACCTGAATCTACATTCA+AGG 0.434806 7_1:-72714678 Msa1036370:five_prime_UTR
TTTGCTTAATTCAGACAAAT+GGG 0.434827 7_1:+72714722 None:intergenic
TAGACTGAATAATTGAAATC+AGG 0.442923 7_1:+72713885 None:intergenic
AAAATGGCAACCATTATTGC+TGG 0.451832 7_1:-72714655 Msa1036370:CDS
AAGCCCAGCAGCCATGGCTT+TGG 0.453307 7_1:-72714334 Msa1036370:CDS
TGATGTATCAAATCAATTTG+TGG 0.461243 7_1:-72713997 Msa1036370:three_prime_UTR
TTAGCAACAATCTTCTTGGT+TGG 0.463955 7_1:-72714266 Msa1036370:CDS
TTTGTGCACAAGCAACCTCT+TGG 0.465311 7_1:-72714601 Msa1036370:CDS
TAATATTAGTTTGTTAGCAT+TGG 0.468415 7_1:+72714756 None:intergenic
AGAATGAGCACTGAAGGAAC+TGG 0.491605 7_1:-72714303 Msa1036370:CDS
CTACCAAAGCCATGGCTGCT+GGG 0.492560 7_1:+72714331 None:intergenic
AGCAGAGATAGCTGCTATCA+AGG 0.498626 7_1:+72714368 None:intergenic
AGCAGGTCAAACATAGGAAT+GGG 0.505396 7_1:-72714396 Msa1036370:CDS
AAATCAATTTGTGGGTTCAT+GGG 0.506046 7_1:-72713988 Msa1036370:three_prime_UTR
CAGAATCTTCATCCTCATCA+AGG 0.507111 7_1:+72714187 None:intergenic
GTCTCATCCCAGACCATTGT+TGG 0.510240 7_1:-72714577 Msa1036370:intron
AACCTGATGTGCAAGGAAGC+AGG 0.522854 7_1:-72714413 Msa1036370:CDS
CTTGTCAAGCCCAGCAGCCA+TGG 0.525662 7_1:-72714340 Msa1036370:CDS
CTAAGGTGCATATCCTTCTG+GGG 0.530728 7_1:+72714148 None:intergenic
AGAGTGAGATGTTCCATTGA+GGG 0.532339 7_1:-72714438 Msa1036370:CDS
AAACTTACCAACAATGGTCT+GGG 0.543127 7_1:+72714570 None:intergenic
AAGCAGGTCAAACATAGGAA+TGG 0.548495 7_1:-72714397 Msa1036370:CDS
AAGATTGTTGCTAAGTCCAA+AGG 0.554462 7_1:+72714275 None:intergenic
CTACGCTTCCTCCCTTGATG+AGG 0.562437 7_1:-72714199 Msa1036370:CDS
TTGCCATCAATAGCTAAGGT+TGG 0.567060 7_1:-72714462 Msa1036370:CDS
AGATTGTTGCTAAGTCCAAA+GGG 0.569327 7_1:+72714276 None:intergenic
ACATCTTCAATCATCCGCAC+AGG 0.569929 7_1:-72714625 Msa1036370:CDS
GATGAGAGAATGAGCACTGA+AGG 0.576075 7_1:-72714309 Msa1036370:CDS
CATGGCTGCTGGGCTTGACA+AGG 0.577276 7_1:+72714341 None:intergenic
AGGATTGCCATCAATAGCTA+AGG 0.584181 7_1:-72714466 Msa1036370:CDS
AAGAGTGAGATGTTCCATTG+AGG 0.585764 7_1:-72714439 Msa1036370:CDS
CAAGGAAGCAGGTCAAACAT+AGG 0.586835 7_1:-72714402 Msa1036370:CDS
ATCCACGCTGTGTGGTGCAT+AGG 0.592101 7_1:-72714794 Msa1036370:five_prime_UTR
TGTCTCTATAAAACCCCAGA+AGG 0.597060 7_1:-72714161 Msa1036370:exon
AGAATCTTCATCCTCATCAA+GGG 0.614208 7_1:+72714188 None:intergenic
TTCATTCTATCCACGCTGTG+TGG 0.619096 7_1:-72714802 Msa1036370:five_prime_UTR
GAGGGAAAACCTGATGTGCA+AGG 0.626356 7_1:-72714420 Msa1036370:CDS
TCTCTCATCTACCAAAGCCA+TGG 0.628797 7_1:+72714323 None:intergenic
ATCTTCATCCTCATCAAGGG+AGG 0.635880 7_1:+72714191 None:intergenic
TCAGGTATGAGAGTATGGAT+AGG 0.637744 7_1:+72714692 None:intergenic
TGTTGCTAAGTCCAAAGGGA+AGG 0.637762 7_1:+72714280 None:intergenic
GCGGATGATTGAAGATGTTG+AGG 0.660911 7_1:+72714630 None:intergenic
AACCTATGCACCACACAGCG+TGG 0.671086 7_1:+72714792 None:intergenic
GAATTTAGAATAAATACACA+AGG 0.671814 7_1:+72714081 None:intergenic
GTCTGGGATGAGACTCCAAG+AGG 0.745215 7_1:+72714586 None:intergenic
GCTTGTGCACAAAACCTGTG+CGG 0.820156 7_1:+72714611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTTTTTTTTATAACT+TGG + chr7_1:72714767-72714786 None:intergenic 10.0%
!!! ATTATGTTTTTTTTATAACT+TGG + chr7_1:72714767-72714786 None:intergenic 10.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr7_1:72714591-72714610 None:intergenic 15.0%
!!! GTTTTTTAATACAACAAAAA+AGG + chr7_1:72714591-72714610 None:intergenic 15.0%
!!! TAATATTAGTTTGTTAGCAT+TGG + chr7_1:72713943-72713962 None:intergenic 20.0%
!! TTTGATGAAAATGAAATTGT+TGG + chr7_1:72714167-72714186 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr7_1:72714210-72714229 Msa1036370:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr7_1:72714618-72714637 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr7_1:72714632-72714651 Msa1036370:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr7_1:72714762-72714781 None:intergenic 20.0%
!!! TAATATTAGTTTGTTAGCAT+TGG + chr7_1:72713943-72713962 None:intergenic 20.0%
!! TTTGATGAAAATGAAATTGT+TGG + chr7_1:72714167-72714186 None:intergenic 20.0%
!! CTTTCAAACATAAATTGTAT+AGG - chr7_1:72714210-72714229 Msa1036370:CDS 20.0%
!!! GAATTTAGAATAAATACACA+AGG + chr7_1:72714618-72714637 None:intergenic 20.0%
!!! AAATTCTAATTTCTCTTTTC+TGG - chr7_1:72714632-72714651 Msa1036370:CDS 20.0%
!!! GTTTTTTTTATAACTTGGAT+TGG + chr7_1:72714762-72714781 None:intergenic 20.0%
! TTTGCTTAATTCAGACAAAT+GGG + chr7_1:72713977-72713996 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + chr7_1:72713978-72713997 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr7_1:72714699-72714718 Msa1036370:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr7_1:72714700-72714719 Msa1036370:five_prime_UTR 25.0%
! TTTGCTTAATTCAGACAAAT+GGG + chr7_1:72713977-72713996 None:intergenic 25.0%
! ATTTGCTTAATTCAGACAAA+TGG + chr7_1:72713978-72713997 None:intergenic 25.0%
! TGATGTATCAAATCAATTTG+TGG - chr7_1:72714699-72714718 Msa1036370:five_prime_UTR 25.0%
! GATGTATCAAATCAATTTGT+GGG - chr7_1:72714700-72714719 Msa1036370:five_prime_UTR 25.0%
! TTTTCCTTGAATGTAGATTC+AGG + chr7_1:72714025-72714044 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr7_1:72714025-72714044 Msa1036370:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr7_1:72714135-72714154 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr7_1:72714154-72714173 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr7_1:72714666-72714685 Msa1036370:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr7_1:72714708-72714727 Msa1036370:five_prime_UTR 30.0%
! TTTTCCTTGAATGTAGATTC+AGG + chr7_1:72714025-72714044 None:intergenic 30.0%
GAATCTACATTCAAGGAAAA+TGG - chr7_1:72714025-72714044 Msa1036370:three_prime_UTR 30.0%
TAGGAAAAACTTACCAACAA+TGG + chr7_1:72714135-72714154 None:intergenic 30.0%
! AAATTGTTGGTTGATTCACT+AGG + chr7_1:72714154-72714173 None:intergenic 30.0%
AGCAGATTCTTTCTTTGTTA+TGG - chr7_1:72714666-72714685 Msa1036370:exon 30.0%
AAATCAATTTGTGGGTTCAT+GGG - chr7_1:72714708-72714727 Msa1036370:five_prime_UTR 30.0%
TAGATTCAGGTATGAGAGTA+TGG + chr7_1:72714012-72714031 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - chr7_1:72714018-72714037 Msa1036370:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - chr7_1:72714041-72714060 Msa1036370:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr7_1:72714129-72714148 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr7_1:72714130-72714149 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr7_1:72714423-72714442 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr7_1:72714424-72714443 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr7_1:72714430-72714449 Msa1036370:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr7_1:72714460-72714479 Msa1036370:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr7_1:72714511-72714530 None:intergenic 35.0%
ACTTCACTGTGCAATTTCTA+AGG + chr7_1:72714568-72714587 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr7_1:72714707-72714726 Msa1036370:five_prime_UTR 35.0%
TAGATTCAGGTATGAGAGTA+TGG + chr7_1:72714012-72714031 None:intergenic 35.0%
CATACCTGAATCTACATTCA+AGG - chr7_1:72714018-72714037 Msa1036370:three_prime_UTR 35.0%
AAAATGGCAACCATTATTGC+TGG - chr7_1:72714041-72714060 Msa1036370:three_prime_UTR 35.0%
AAACTTACCAACAATGGTCT+GGG + chr7_1:72714129-72714148 None:intergenic 35.0%
AAAACTTACCAACAATGGTC+TGG + chr7_1:72714130-72714149 None:intergenic 35.0%
AGATTGTTGCTAAGTCCAAA+GGG + chr7_1:72714423-72714442 None:intergenic 35.0%
AAGATTGTTGCTAAGTCCAA+AGG + chr7_1:72714424-72714443 None:intergenic 35.0%
TTAGCAACAATCTTCTTGGT+TGG - chr7_1:72714430-72714449 Msa1036370:CDS 35.0%
!! TTGGTGTCTTTGGTCTTATA+TGG - chr7_1:72714460-72714479 Msa1036370:CDS 35.0%
AGAATCTTCATCCTCATCAA+GGG + chr7_1:72714511-72714530 None:intergenic 35.0%
ACTTCACTGTGCAATTTCTA+AGG + chr7_1:72714568-72714587 None:intergenic 35.0%
CAAATCAATTTGTGGGTTCA+TGG - chr7_1:72714707-72714726 Msa1036370:five_prime_UTR 35.0%
! TCAGGTATGAGAGTATGGAT+AGG + chr7_1:72714007-72714026 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr7_1:72714230-72714249 Msa1036370:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr7_1:72714234-72714253 Msa1036370:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr7_1:72714240-72714259 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr7_1:72714257-72714276 Msa1036370:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr7_1:72714258-72714277 Msa1036370:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr7_1:72714299-72714318 Msa1036370:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr7_1:72714300-72714319 Msa1036370:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr7_1:72714426-72714445 Msa1036370:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr7_1:72714441-72714460 Msa1036370:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr7_1:72714450-72714469 Msa1036370:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr7_1:72714512-72714531 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr7_1:72714510-72714529 Msa1036370:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr7_1:72714535-72714554 Msa1036370:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr7_1:72714552-72714571 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr7_1:72714553-72714572 None:intergenic 40.0%
! TCAGGTATGAGAGTATGGAT+AGG + chr7_1:72714007-72714026 None:intergenic 40.0%
AGGATTGCCATCAATAGCTA+AGG - chr7_1:72714230-72714249 Msa1036370:CDS 40.0%
TTGCCATCAATAGCTAAGGT+TGG - chr7_1:72714234-72714253 Msa1036370:CDS 40.0%
CTTCCAACCTTAGCTATTGA+TGG + chr7_1:72714240-72714259 None:intergenic 40.0%
AAGAGTGAGATGTTCCATTG+AGG - chr7_1:72714257-72714276 Msa1036370:CDS 40.0%
AGAGTGAGATGTTCCATTGA+GGG - chr7_1:72714258-72714277 Msa1036370:CDS 40.0%
AAGCAGGTCAAACATAGGAA+TGG - chr7_1:72714299-72714318 Msa1036370:CDS 40.0%
AGCAGGTCAAACATAGGAAT+GGG - chr7_1:72714300-72714319 Msa1036370:CDS 40.0%
GGACTTAGCAACAATCTTCT+TGG - chr7_1:72714426-72714445 Msa1036370:CDS 40.0%
CTTCTTGGTTGGATCTTGTT+TGG - chr7_1:72714441-72714460 Msa1036370:CDS 40.0%
!! TGGATCTTGTTTGGTGTCTT+TGG - chr7_1:72714450-72714469 Msa1036370:CDS 40.0%
CAGAATCTTCATCCTCATCA+AGG + chr7_1:72714512-72714531 None:intergenic 40.0%
CTTGATGAGGATGAAGATTC+TGG - chr7_1:72714510-72714529 Msa1036370:intron 40.0%
TGTCTCTATAAAACCCCAGA+AGG - chr7_1:72714535-72714554 Msa1036370:intron 40.0%
! TCTAAGGTGCATATCCTTCT+GGG + chr7_1:72714552-72714571 None:intergenic 40.0%
!! TTCTAAGGTGCATATCCTTC+TGG + chr7_1:72714553-72714572 None:intergenic 40.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr7_1:72714054-72714073 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr7_1:72714069-72714088 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr7_1:72714071-72714090 Msa1036370:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr7_1:72714095-72714114 Msa1036370:three_prime_UTR 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr7_1:72714274-72714293 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr7_1:72714294-72714313 Msa1036370:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr7_1:72714331-72714350 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr7_1:72714376-72714395 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr7_1:72714387-72714406 Msa1036370:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr7_1:72714393-72714412 Msa1036370:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr7_1:72714419-72714438 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr7_1:72714508-72714527 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr7_1:72714551-72714570 None:intergenic 45.0%
! TGTTGAGGTGCCAGCAATAA+TGG + chr7_1:72714054-72714073 None:intergenic 45.0%
GCGGATGATTGAAGATGTTG+AGG + chr7_1:72714069-72714088 None:intergenic 45.0%
ACATCTTCAATCATCCGCAC+AGG - chr7_1:72714071-72714090 Msa1036370:three_prime_UTR 45.0%
TTTGTGCACAAGCAACCTCT+TGG - chr7_1:72714095-72714114 Msa1036370:three_prime_UTR 45.0%
! CACATCAGGTTTTCCCTCAA+TGG + chr7_1:72714274-72714293 None:intergenic 45.0%
CAAGGAAGCAGGTCAAACAT+AGG - chr7_1:72714294-72714313 Msa1036370:CDS 45.0%
AGCAGAGATAGCTGCTATCA+AGG + chr7_1:72714331-72714350 None:intergenic 45.0%
TCTCTCATCTACCAAAGCCA+TGG + chr7_1:72714376-72714395 None:intergenic 45.0%
!! GATGAGAGAATGAGCACTGA+AGG - chr7_1:72714387-72714406 Msa1036370:CDS 45.0%
!! AGAATGAGCACTGAAGGAAC+TGG - chr7_1:72714393-72714412 Msa1036370:CDS 45.0%
TGTTGCTAAGTCCAAAGGGA+AGG + chr7_1:72714419-72714438 None:intergenic 45.0%
ATCTTCATCCTCATCAAGGG+AGG + chr7_1:72714508-72714527 None:intergenic 45.0%
CTAAGGTGCATATCCTTCTG+GGG + chr7_1:72714551-72714570 None:intergenic 45.0%
GCTTGTGCACAAAACCTGTG+CGG + chr7_1:72714088-72714107 None:intergenic 50.0%
GTCTCATCCCAGACCATTGT+TGG - chr7_1:72714119-72714138 Msa1036370:three_prime_UTR 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr7_1:72714276-72714295 Msa1036370:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr7_1:72714283-72714302 Msa1036370:CDS 50.0%
GCTTGTGCACAAAACCTGTG+CGG + chr7_1:72714088-72714107 None:intergenic 50.0%
GTCTCATCCCAGACCATTGT+TGG - chr7_1:72714119-72714138 Msa1036370:three_prime_UTR 50.0%
GAGGGAAAACCTGATGTGCA+AGG - chr7_1:72714276-72714295 Msa1036370:CDS 50.0%
AACCTGATGTGCAAGGAAGC+AGG - chr7_1:72714283-72714302 Msa1036370:CDS 50.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr7_1:72713902-72713921 Msa1036370:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr7_1:72713907-72713926 None:intergenic 55.0%
! GTCTGGGATGAGACTCCAAG+AGG + chr7_1:72714113-72714132 None:intergenic 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr7_1:72714288-72714307 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr7_1:72714368-72714387 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr7_1:72714369-72714388 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr7_1:72714405-72714424 Msa1036370:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr7_1:72714497-72714516 Msa1036370:intron 55.0%
ATCCACGCTGTGTGGTGCAT+AGG - chr7_1:72713902-72713921 Msa1036370:three_prime_UTR 55.0%
AACCTATGCACCACACAGCG+TGG + chr7_1:72713907-72713926 None:intergenic 55.0%
! GTCTGGGATGAGACTCCAAG+AGG + chr7_1:72714113-72714132 None:intergenic 55.0%
GACCTGCTTCCTTGCACATC+AGG + chr7_1:72714288-72714307 None:intergenic 55.0%
CTACCAAAGCCATGGCTGCT+GGG + chr7_1:72714368-72714387 None:intergenic 55.0%
TCTACCAAAGCCATGGCTGC+TGG + chr7_1:72714369-72714388 None:intergenic 55.0%
!! GAAGGAACTGGCCTTCCCTT+TGG - chr7_1:72714405-72714424 Msa1036370:CDS 55.0%
CTACGCTTCCTCCCTTGATG+AGG - chr7_1:72714497-72714516 Msa1036370:intron 55.0%
CATGGCTGCTGGGCTTGACA+AGG + chr7_1:72714358-72714377 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr7_1:72714356-72714375 Msa1036370:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr7_1:72714362-72714381 Msa1036370:CDS 60.0%
CATGGCTGCTGGGCTTGACA+AGG + chr7_1:72714358-72714377 None:intergenic 60.0%
CTTGTCAAGCCCAGCAGCCA+TGG - chr7_1:72714356-72714375 Msa1036370:CDS 60.0%
AAGCCCAGCAGCCATGGCTT+TGG - chr7_1:72714362-72714381 Msa1036370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 72713897 72714821 72713897 ID=Msa1036370;Name=Msa1036370
chr7_1 mRNA 72713897 72714821 72713897 ID=Msa1036370-mRNA-1;Parent=Msa1036370;Name=Msa1036370-mRNA-1;_AED=0.39;_eAED=0.39;_QI=147|1|1|1|1|1|2|276|136
chr7_1 exon 72713897 72714486 72713897 ID=Msa1036370-mRNA-1:exon:17809;Parent=Msa1036370-mRNA-1
chr7_1 exon 72714578 72714821 72714578 ID=Msa1036370-mRNA-1:exon:17808;Parent=Msa1036370-mRNA-1
chr7_1 five_prime_UTR 72714675 72714821 72714675 ID=Msa1036370-mRNA-1:five_prime_utr;Parent=Msa1036370-mRNA-1
chr7_1 CDS 72714578 72714674 72714578 ID=Msa1036370-mRNA-1:cds;Parent=Msa1036370-mRNA-1
chr7_1 CDS 72714173 72714486 72714173 ID=Msa1036370-mRNA-1:cds;Parent=Msa1036370-mRNA-1
chr7_1 three_prime_UTR 72713897 72714172 72713897 ID=Msa1036370-mRNA-1:three_prime_utr;Parent=Msa1036370-mRNA-1
Gene Sequence

>Msa1036370

ATGGCAACCATTATTGCTGGCACCTCAACATCTTCAATCATCCGCACAGGTTTTGTGCACAAGCAACCTCTTGGAGTCTCATCCCAGACCATTGTTGGATTGCCATCAATAGCTAAGGTTGGAAGAGTGAGATGTTCCATTGAGGGAAAACCTGATGTGCAAGGAAGCAGGTCAAACATAGGAATGGGAGCATCCTTGATAGCAGCTATCTCTGCTGCAACCTTGTCAAGCCCAGCAGCCATGGCTTTGGTAGATGAGAGAATGAGCACTGAAGGAACTGGCCTTCCCTTTGGACTTAGCAACAATCTTCTTGGTTGGATCTTGTTTGGTGTCTTTGGTCTTATATGGACTCTCTATTTTATCTACGCTTCCTCCCTTGATGAGGATGAAGATTCTGGATTGTCTCTATAA

Protein sequence

>Msa1036370

MATIIAGTSTSSIIRTGFVHKQPLGVSSQTIVGLPSIAKVGRVRCSIEGKPDVQGSRSNIGMGASLIAAISAATLSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFIYASSLDEDEDSGLSL*