AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833980 MtrunA17_Chr5g0399711 85.427 199 21 3 1 196 1 194 1.20e-117 337
Msa0833980 MtrunA17_Chr3g0102051 44.144 111 58 1 90 196 77 187 3.65e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833980 AT4G17560.1 62.500 136 37 3 62 196 68 190 4.00e-43 147
Msa0833980 AT5G47190.1 51.934 181 66 3 31 196 20 194 7.99e-42 144
Msa0833980 AT1G24240.1 49.351 77 39 0 120 196 112 188 2.86e-21 90.1
Msa0833980 AT4G11630.1 49.351 77 39 0 120 196 115 191 3.30e-21 89.7
Msa0833980 AT5G11750.1 49.351 77 39 0 120 196 119 195 3.92e-21 89.7
Msa0833980 AT5G11750.2 47.436 78 41 0 119 196 142 219 2.09e-20 88.2

Find 104 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCCGCATGCTTATTTC+TGG 0.185236 5_4:+7045461 Msa0833980:three_prime_UTR
CAAACTGGAAGATGGGAATT+TGG 0.197875 5_4:+7044411 Msa0833980:CDS
TATGACAATACCTTTATAAA+TGG 0.225579 5_4:-7044162 None:intergenic
TTTCTTAGAGAATATATTAA+AGG 0.251560 5_4:-7045389 None:intergenic
CTCTACGGTCTTCCTCCTTA+TGG 0.262331 5_4:+7042447 Msa0833980:exon
CTTCTTCGACCTCAATTTCA+TGG 0.303030 5_4:+7042711 Msa0833980:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 5_4:+7042856 Msa0833980:CDS
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 5_4:+7044121 Msa0833980:intron
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 5_4:+7042468 Msa0833980:CDS
GTAACTTACCCTTCATTTCC+AGG 0.329154 5_4:+7042687 Msa0833980:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 5_4:+7042925 Msa0833980:CDS
TCATTTGAAAGTGGAGAATC+TGG 0.340991 5_4:-7045242 None:intergenic
CGTAGGTTATCCATTTATAA+AGG 0.341243 5_4:+7044152 Msa0833980:CDS
TTAATATATTCTCTAAGAAA+TGG 0.343677 5_4:+7045392 Msa0833980:three_prime_UTR
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 5_4:-7042786 None:intergenic
GTCTTGCCTGCCTGACCTTT+CGG 0.348430 5_4:-7045195 None:intergenic
ACTTTGATTTCTTTGATGTT+TGG 0.358077 5_4:-7045163 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 5_4:-7042635 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 5_4:+7042926 Msa0833980:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 5_4:-7042821 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 5_4:-7042620 None:intergenic
CGAAGAATTATTGCCGGTAC+AGG 0.382604 5_4:+7044224 Msa0833980:CDS
AAACTGGAAGATGGGAATTT+GGG 0.388500 5_4:+7044412 Msa0833980:CDS
CAAATTTCTCAATATTATCA+AGG 0.389659 5_4:-7045432 None:intergenic
GGATAATGCTGATGAAGTTT+CGG 0.394551 5_4:+7042832 Msa0833980:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 5_4:+7042850 Msa0833980:CDS
TTCTCCACTTTCAAATGATA+AGG 0.412200 5_4:+7045247 Msa0833980:CDS
TTCTTAGAGAATATATTAAA+GGG 0.425998 5_4:-7045388 None:intergenic
CGCGTCCGAAGAATTATTGC+CGG 0.429331 5_4:+7044218 Msa0833980:CDS
CCACAATATCTCCAGTCCTT+AGG 0.437951 5_4:-7043988 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 5_4:+7043927 Msa0833980:intron
GATAACCTACGTTTGTTCTC+CGG 0.447583 5_4:-7044140 None:intergenic
AAATCAAAATAAACAAATTG+TGG 0.467588 5_4:-7045337 None:intergenic
AAGAGGTTCAAACTGGAAGA+TGG 0.470246 5_4:+7044403 Msa0833980:CDS
AGGATAGAAGAGGTTCAAAC+TGG 0.476109 5_4:+7044396 Msa0833980:intron
ACGAGAAGCGAGGGTGGAAG+CGG 0.476314 5_4:-7042666 None:intergenic
TTTCCTCTTCTTCCTCTCTA+CGG 0.477516 5_4:+7042432 Msa0833980:five_prime_UTR
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 5_4:-7042696 None:intergenic
GAAATACTTGGGAAGCCATA+AGG 0.484706 5_4:-7042462 None:intergenic
GTAATGTATTCATTAGTGCT+TGG 0.487341 5_4:-7045491 None:intergenic
GACTATCTCAACCCCTGTAC+CGG 0.490009 5_4:-7044237 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 5_4:+7042811 Msa0833980:CDS
ATAAAACCTGAAGAAATACT+TGG 0.497075 5_4:-7042474 None:intergenic
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 5_4:-7042903 None:intergenic
TGGTAAAGCACCGAAAGGTC+AGG 0.504557 5_4:+7045185 Msa0833980:CDS
AATCAAAATAAACAAATTGT+GGG 0.505914 5_4:-7045336 None:intergenic
CAATGTCCTCCAACAAAGCT+AGG 0.507926 5_4:+7042626 Msa0833980:CDS
CTGTACCGGCAATAATTCTT+CGG 0.509388 5_4:-7044223 None:intergenic
TCAAAGTAATCTGCTGATCT+CGG 0.512334 5_4:+7045298 Msa0833980:exon
TTTGGATTCTGCATCTGAGG+TGG 0.512535 5_4:+7042874 Msa0833980:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 5_4:-7043983 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 5_4:+7043988 Msa0833980:CDS
TGTCATGCCTATGCTAGTAC+TGG 0.523017 5_4:+7044590 Msa0833980:CDS
CAGTCCTTCCTTCGCACGTG+TGG 0.528105 5_4:+7042357 None:intergenic
AAATTTCTCAATATTATCAA+GGG 0.530446 5_4:-7045431 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 5_4:-7042792 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 5_4:+7042877 Msa0833980:CDS
GTGACCTTATCATTTGAAAG+TGG 0.534354 5_4:-7045251 None:intergenic
GAAGAATTATTGCCGGTACA+GGG 0.534441 5_4:+7044225 Msa0833980:CDS
TAACTTACCCTTCATTTCCA+GGG 0.543085 5_4:+7042688 Msa0833980:CDS
AGAGGTTCAAACTGGAAGAT+GGG 0.543482 5_4:+7044404 Msa0833980:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 5_4:+7044000 Msa0833980:CDS
TATCCGTTCCACACGTGCGA+AGG 0.544362 5_4:-7042365 None:intergenic
TTAAGCTTGGTGATGTTATG+GGG 0.548890 5_4:+7042927 Msa0833980:CDS
GTCATATCAAGACAAAATGC+TGG 0.549163 5_4:+7044179 Msa0833980:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 5_4:-7042705 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 5_4:-7042720 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 5_4:-7042632 None:intergenic
TAACACAAAATGCAGCAGCT+TGG 0.561594 5_4:-7044566 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 5_4:+7043977 Msa0833980:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 5_4:-7042761 None:intergenic
CTTCCTTCGCACGTGTGGAA+CGG 0.567537 5_4:+7042362 Msa0833980:five_prime_UTR
AGACAAACTCGTGTTAAGCT+TGG 0.574922 5_4:+7042914 Msa0833980:CDS
AGACCGTAGAGAGGAAGAAG+AGG 0.581223 5_4:-7042435 None:intergenic
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 5_4:-7043978 None:intergenic
TGTGGAACGGATAGAAGAAA+CGG 0.583971 5_4:+7042375 Msa0833980:five_prime_UTR
AGCTTAACACGAGTTTGTCT+AGG 0.586483 5_4:-7042911 None:intergenic
CGTTCCACACGTGCGAAGGA+AGG 0.586778 5_4:-7042361 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 5_4:+7043972 Msa0833980:CDS
TAAAACCTGAAGAAATACTT+GGG 0.592119 5_4:-7042473 None:intergenic
CATTTGAAAGTGGAGAATCT+GGG 0.592345 5_4:-7045241 None:intergenic
TAAGTTACGAGAAGCGAGGG+TGG 0.596133 5_4:-7042672 None:intergenic
TGTGCAGATATTGCATAAGA+GGG 0.596182 5_4:+7043928 Msa0833980:intron
TGTTGTGATTAGGATAGAAG+AGG 0.604801 5_4:+7044386 Msa0833980:intron
AAGAATTATTGCCGGTACAG+GGG 0.609341 5_4:+7044226 Msa0833980:CDS
AAACTAGGTTTAGCAATGAG+AGG 0.610020 5_4:-7042746 None:intergenic
GGGTAAGTTACGAGAAGCGA+GGG 0.612377 5_4:-7042675 None:intergenic
AAAGCACCGAAAGGTCAGGC+AGG 0.614155 5_4:+7045189 Msa0833980:CDS
GATGAAGTTTCGGAAACTGA+AGG 0.614399 5_4:+7042842 Msa0833980:CDS
TAAGGAGGAAGACCGTAGAG+AGG 0.625148 5_4:-7042444 None:intergenic
GAGAGCTGATTCCAATTCCG+AGG 0.627170 5_4:+7042775 Msa0833980:CDS
CATGGTACCAGTACTAGCAT+AGG 0.633475 5_4:-7044597 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 5_4:-7042743 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 5_4:-7042908 None:intergenic
AAACATCAAAGAAATCAAAG+TGG 0.650615 5_4:+7045165 Msa0833980:CDS
CAAAGTGGTAAAGCACCGAA+AGG 0.655009 5_4:+7045180 Msa0833980:CDS
ATACTTGGGAAGCCATAAGG+AGG 0.658948 5_4:-7042459 None:intergenic
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 5_4:+7043954 Msa0833980:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 5_4:+7042928 Msa0833980:CDS
TTCTACCAGAAATAAGCATG+CGG 0.676413 5_4:-7045466 None:intergenic
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 5_4:-7042695 None:intergenic
GCATAATGTGACAACTGACA+AGG 0.682976 5_4:-7045527 None:intergenic
AGGGTAAGTTACGAGAAGCG+AGG 0.688532 5_4:-7042676 None:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 5_4:+7044135 Msa0833980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTTATAATAGAAAATT+TGG + chr5_4:7043239-7043258 Msa0833980:intron 15.0%
!!! CTATTTCATTTTCATATATT+TGG - chr5_4:7044507-7044526 None:intergenic 15.0%
!! GTTTATGAAATATGATATTA+AGG + chr5_4:7044969-7044988 Msa0833980:intron 15.0%
!! AATCAAAATAAACAAATTGT+GGG - chr5_4:7045339-7045358 None:intergenic 15.0%
!! AAATCAAAATAAACAAATTG+TGG - chr5_4:7045340-7045359 None:intergenic 15.0%
!! TTCTTAGAGAATATATTAAA+GGG - chr5_4:7045391-7045410 None:intergenic 15.0%
!! TTTCTTAGAGAATATATTAA+AGG - chr5_4:7045392-7045411 None:intergenic 15.0%
!!! TTAATATATTCTCTAAGAAA+TGG + chr5_4:7045392-7045411 Msa0833980:three_prime_UTR 15.0%
!! AAATTTCTCAATATTATCAA+GGG - chr5_4:7045434-7045453 None:intergenic 15.0%
!!! AAGTATTTGTTACAATGAAT+TGG - chr5_4:7042531-7042550 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG - chr5_4:7043182-7043201 None:intergenic 20.0%
!! AATATTACTTACACATGAAT+AGG + chr5_4:7043283-7043302 Msa0833980:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG - chr5_4:7043523-7043542 None:intergenic 20.0%
!! CAAAAATCCAAATTCTAATA+TGG - chr5_4:7043584-7043603 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG + chr5_4:7043582-7043601 Msa0833980:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG - chr5_4:7043864-7043883 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG + chr5_4:7043863-7043882 Msa0833980:intron 20.0%
!! TCAAATTAATATGTTGAAGA+AGG + chr5_4:7044060-7044079 Msa0833980:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG + chr5_4:7044061-7044080 Msa0833980:intron 20.0%
!! TATGACAATACCTTTATAAA+TGG - chr5_4:7044165-7044184 None:intergenic 20.0%
!!! AATAAACGCTTCATTTTATA+AGG - chr5_4:7045083-7045102 None:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+TGG + chr5_4:7045082-7045101 Msa0833980:intron 20.0%
!! CAAATTTCTCAATATTATCA+AGG - chr5_4:7045435-7045454 None:intergenic 20.0%
! TAAAACCTGAAGAAATACTT+GGG - chr5_4:7042476-7042495 None:intergenic 25.0%
! ATAAAACCTGAAGAAATACT+TGG - chr5_4:7042477-7042496 None:intergenic 25.0%
! TTAATAACAGTATAGAGTCA+TGG - chr5_4:7042967-7042986 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG + chr5_4:7043199-7043218 Msa0833980:intron 25.0%
! TACAACACATTTAATGTGTT+GGG - chr5_4:7043660-7043679 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG - chr5_4:7043753-7043772 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG + chr5_4:7043753-7043772 Msa0833980:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG + chr5_4:7043761-7043780 Msa0833980:intron 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG - chr5_4:7043865-7043884 None:intergenic 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG + chr5_4:7043862-7043881 Msa0833980:intron 25.0%
! ATAAGATGATATGATTTCTG+TGG + chr5_4:7044086-7044105 Msa0833980:intron 25.0%
! TAATCCCTATTAAATTATCG+CGG - chr5_4:7044297-7044316 None:intergenic 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG + chr5_4:7044647-7044666 Msa0833980:intron 25.0%
! ACCAATTTCTTAACAATGAA+AGG - chr5_4:7044651-7044670 None:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG + chr5_4:7044653-7044672 Msa0833980:intron 25.0%
! ATATCCTTGATCTTACAAAT+TGG + chr5_4:7044706-7044725 Msa0833980:intron 25.0%
! GATATCATTAAACAACAACT+AGG - chr5_4:7044813-7044832 None:intergenic 25.0%
!!! CTTTGCATTATTTTTCTCTA+AGG + chr5_4:7044920-7044939 Msa0833980:intron 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG - chr5_4:7045071-7045090 None:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG - chr5_4:7045166-7045185 None:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG + chr5_4:7045165-7045184 Msa0833980:CDS 25.0%
TGGATAATAATGAGATGAGA+GGG - chr5_4:7042511-7042530 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG - chr5_4:7042512-7042531 None:intergenic 30.0%
AAATGAAATCTCATGTGTGT+TGG - chr5_4:7043061-7043080 None:intergenic 30.0%
ATTACTTACACATGAATAGG+AGG + chr5_4:7043286-7043305 Msa0833980:intron 30.0%
TATGAGCTCTCATTTAACAA+AGG - chr5_4:7043561-7043580 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG + chr5_4:7043574-7043593 Msa0833980:intron 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG - chr5_4:7043618-7043637 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG + chr5_4:7043617-7043636 Msa0833980:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG - chr5_4:7043643-7043662 None:intergenic 30.0%
CTACAACACATTTAATGTGT+TGG - chr5_4:7043661-7043680 None:intergenic 30.0%
CATTTCATTTGCCATCATTT+CGG - chr5_4:7043686-7043705 None:intergenic 30.0%
ATCTTCCAACATATTTACCT+TGG + chr5_4:7043733-7043752 Msa0833980:intron 30.0%
TTGATCCAAGGTAAATATGT+TGG - chr5_4:7043741-7043760 None:intergenic 30.0%
AGATATTGTGGAAATCAGAT+TGG + chr5_4:7044000-7044019 Msa0833980:CDS 30.0%
!!! TTTATTTTTGTCCTACTTGC+AGG + chr5_4:7044112-7044131 Msa0833980:intron 30.0%
CGTAGGTTATCCATTTATAA+AGG + chr5_4:7044152-7044171 Msa0833980:CDS 30.0%
TATTAAATTATCGCGGAGAA+AGG - chr5_4:7044290-7044309 None:intergenic 30.0%
TTTCTCCGCGATAATTTAAT+AGG + chr5_4:7044289-7044308 Msa0833980:intron 30.0%
TTCTCCGCGATAATTTAATA+GGG + chr5_4:7044290-7044309 Msa0833980:intron 30.0%
! ATCTAATTGCTGTTGTGATT+AGG + chr5_4:7044376-7044395 Msa0833980:intron 30.0%
! AAGGATATTTTCAGCTGTAT+TGG - chr5_4:7044694-7044713 None:intergenic 30.0%
TGTTGTAACATGTCTGTTAA+TGG + chr5_4:7044878-7044897 Msa0833980:intron 30.0%
AAAGAACTGCATACGTTTAT+TGG - chr5_4:7044904-7044923 None:intergenic 30.0%
ATTCAAGCAAATTAGCCAAA+TGG + chr5_4:7045007-7045026 Msa0833980:intron 30.0%
ACGTAATAATGTGATCCATT+TGG - chr5_4:7045025-7045044 None:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG - chr5_4:7045072-7045091 None:intergenic 30.0%
TTCTCCACTTTCAAATGATA+AGG + chr5_4:7045247-7045266 Msa0833980:CDS 30.0%
GTAATGTATTCATTAGTGCT+TGG - chr5_4:7045494-7045513 None:intergenic 30.0%
! TTTGTTGGAGGACATTGATT+AGG - chr5_4:7042623-7042642 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG + chr5_4:7042688-7042707 Msa0833980:CDS 35.0%
AAACTAGGTTTAGCAATGAG+AGG - chr5_4:7042749-7042768 None:intergenic 35.0%
TCAGCTCTCACAATAAAACT+AGG - chr5_4:7042764-7042783 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG - chr5_4:7042795-7042814 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG + chr5_4:7042811-7042830 Msa0833980:CDS 35.0%
GGATAATGCTGATGAAGTTT+CGG + chr5_4:7042832-7042851 Msa0833980:CDS 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG + chr5_4:7042925-7042944 Msa0833980:CDS 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG + chr5_4:7042926-7042945 Msa0833980:CDS 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG + chr5_4:7042927-7042946 Msa0833980:CDS 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG - chr5_4:7043340-7043359 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG - chr5_4:7043358-7043377 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG - chr5_4:7043387-7043406 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG - chr5_4:7043416-7043435 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG - chr5_4:7043417-7043436 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+TGG - chr5_4:7043463-7043482 None:intergenic 35.0%
!! CCAAAAGTGTCAAAAGCAAA+TGG + chr5_4:7043460-7043479 Msa0833980:intron 35.0%
TTATAAGGTCTGGATGCATT+TGG - chr5_4:7043608-7043627 None:intergenic 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG - chr5_4:7043623-7043642 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG + chr5_4:7043684-7043703 Msa0833980:intron 35.0%
!! TCAATGAACTCTGAAATGCA+TGG + chr5_4:7043898-7043917 Msa0833980:intron 35.0%
TTGTGCAGATATTGCATAAG+AGG + chr5_4:7043927-7043946 Msa0833980:intron 35.0%
TGTGCAGATATTGCATAAGA+GGG + chr5_4:7043928-7043947 Msa0833980:intron 35.0%
GTCATATCAAGACAAAATGC+TGG + chr5_4:7044179-7044198 Msa0833980:CDS 35.0%
CATCCAAAAGAAACATTCAC+CGG - chr5_4:7044335-7044354 None:intergenic 35.0%
CACAACAGCAATTAGATACA+TGG - chr5_4:7044373-7044392 None:intergenic 35.0%
TGTTGTGATTAGGATAGAAG+AGG + chr5_4:7044386-7044405 Msa0833980:intron 35.0%
AAACTGGAAGATGGGAATTT+GGG + chr5_4:7044412-7044431 Msa0833980:CDS 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG - chr5_4:7044627-7044646 None:intergenic 35.0%
! CAGCTGTATTGGTATATGAT+CGG - chr5_4:7044683-7044702 None:intergenic 35.0%
GAGTCCAATTTGTAAGATCA+AGG - chr5_4:7044713-7044732 None:intergenic 35.0%
GTTGGAAAGTCAAACAGAAA+GGG - chr5_4:7044768-7044787 None:intergenic 35.0%
TGTTGGAAAGTCAAACAGAA+AGG - chr5_4:7044769-7044788 None:intergenic 35.0%
! TGTTTGACTTTCCAACACTT+TGG + chr5_4:7044772-7044791 Msa0833980:intron 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG - chr5_4:7044786-7044805 None:intergenic 35.0%
AACAACAACTAGGACTGAAA+AGG - chr5_4:7044803-7044822 None:intergenic 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG + chr5_4:7044832-7044851 Msa0833980:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG - chr5_4:7044841-7044860 None:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG - chr5_4:7045050-7045069 None:intergenic 35.0%
! ACGCTTCATTTTATAAGGCA+AGG - chr5_4:7045078-7045097 None:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG - chr5_4:7045244-7045263 None:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG - chr5_4:7045245-7045264 None:intergenic 35.0%
GTGACCTTATCATTTGAAAG+TGG - chr5_4:7045254-7045273 None:intergenic 35.0%
TCAAAGTAATCTGCTGATCT+CGG + chr5_4:7045298-7045317 Msa0833980:exon 35.0%
TTATTCCGCATGCTTATTTC+TGG + chr5_4:7045461-7045480 Msa0833980:three_prime_UTR 35.0%
TTCTACCAGAAATAAGCATG+CGG - chr5_4:7045469-7045488 None:intergenic 35.0%
TGTGGAACGGATAGAAGAAA+CGG + chr5_4:7042375-7042394 Msa0833980:five_prime_UTR 40.0%
TTTCCTCTTCTTCCTCTCTA+CGG + chr5_4:7042432-7042451 Msa0833980:five_prime_UTR 40.0%
GAAATACTTGGGAAGCCATA+AGG - chr5_4:7042465-7042484 None:intergenic 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG - chr5_4:7042638-7042657 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG + chr5_4:7042687-7042706 Msa0833980:CDS 40.0%
CTTCTTCGACCTCAATTTCA+TGG + chr5_4:7042711-7042730 Msa0833980:CDS 40.0%
ATTACAGCGCCATGAAATTG+AGG - chr5_4:7042723-7042742 None:intergenic 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG - chr5_4:7042789-7042808 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG + chr5_4:7042842-7042861 Msa0833980:CDS 40.0%
! AACTGAAGGAGAACAGGTTT+TGG + chr5_4:7042856-7042875 Msa0833980:CDS 40.0%
TTAACACGAGTTTGTCTAGG+CGG - chr5_4:7042911-7042930 None:intergenic 40.0%
AGCTTAACACGAGTTTGTCT+AGG - chr5_4:7042914-7042933 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG + chr5_4:7042914-7042933 Msa0833980:CDS 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG + chr5_4:7042928-7042947 Msa0833980:CDS 40.0%
TGCCATCCAAAAAGGTTTAG+CGG - chr5_4:7043332-7043351 None:intergenic 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr5_4:7043363-7043382 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG + chr5_4:7043360-7043379 Msa0833980:intron 40.0%
AACACAACATTCATGGACCT+AGG + chr5_4:7043367-7043386 Msa0833980:intron 40.0%
CATTGCTATGCATAACCCTT+TGG + chr5_4:7043398-7043417 Msa0833980:intron 40.0%
CCCTTTGGATTCTATGTAGA+AGG + chr5_4:7043413-7043432 Msa0833980:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG + chr5_4:7043495-7043514 Msa0833980:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG - chr5_4:7043499-7043518 None:intergenic 40.0%
GGTACCAATTCATCTCTGTA+AGG - chr5_4:7043502-7043521 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG + chr5_4:7043692-7043711 Msa0833980:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG + chr5_4:7043695-7043714 Msa0833980:intron 40.0%
GATAACCTACGTTTGTTCTC+CGG - chr5_4:7044143-7044162 None:intergenic 40.0%
! CTGTACCGGCAATAATTCTT+CGG - chr5_4:7044226-7044245 None:intergenic 40.0%
GAAGAATTATTGCCGGTACA+GGG + chr5_4:7044225-7044244 Msa0833980:CDS 40.0%
AAGAATTATTGCCGGTACAG+GGG + chr5_4:7044226-7044245 Msa0833980:CDS 40.0%
!! AGAGTGAGGGTACTTACATT+GGG - chr5_4:7044265-7044284 None:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG - chr5_4:7044266-7044285 None:intergenic 40.0%
! ATTAGTGCTGTCATTTGCAC+CGG + chr5_4:7044313-7044332 Msa0833980:intron 40.0%
AGGATAGAAGAGGTTCAAAC+TGG + chr5_4:7044396-7044415 Msa0833980:intron 40.0%
AAGAGGTTCAAACTGGAAGA+TGG + chr5_4:7044403-7044422 Msa0833980:CDS 40.0%
AGAGGTTCAAACTGGAAGAT+GGG + chr5_4:7044404-7044423 Msa0833980:CDS 40.0%
CAAACTGGAAGATGGGAATT+TGG + chr5_4:7044411-7044430 Msa0833980:CDS 40.0%
! TGAAGTCCCTTTAGAGACAT+TGG + chr5_4:7044477-7044496 Msa0833980:intron 40.0%
GGTCATCCAATGTCTCTAAA+GGG - chr5_4:7044486-7044505 None:intergenic 40.0%
TGGTCATCCAATGTCTCTAA+AGG - chr5_4:7044487-7044506 None:intergenic 40.0%
TAACACAAAATGCAGCAGCT+TGG - chr5_4:7044569-7044588 None:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG - chr5_4:7044618-7044637 None:intergenic 40.0%
ATACTTGGGAAGCCATAAGG+AGG - chr5_4:7042462-7042481 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG + chr5_4:7042468-7042487 Msa0833980:CDS 45.0%
CAATGTCCTCCAACAAAGCT+AGG + chr5_4:7042626-7042645 Msa0833980:CDS 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG - chr5_4:7042635-7042654 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG - chr5_4:7042698-7042717 None:intergenic 45.0%
CTAGGTTTAGCAATGAGAGG+AGG - chr5_4:7042746-7042765 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG - chr5_4:7042824-7042843 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG + chr5_4:7042850-7042869 Msa0833980:CDS 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG + chr5_4:7042871-7042890 Msa0833980:CDS 45.0%
TTTGGATTCTGCATCTGAGG+TGG + chr5_4:7042874-7042893 Msa0833980:CDS 45.0%
! GCACTGACACTTCAGATCAA+AGG + chr5_4:7043030-7043049 Msa0833980:intron 45.0%
ACACAAACACGAACACCAGA+CGG - chr5_4:7043112-7043131 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG + chr5_4:7043293-7043312 Msa0833980:intron 45.0%
!!! TTTTGGCTTCCTAGCATCAG+AGG - chr5_4:7043446-7043465 None:intergenic 45.0%
CCTTAATTGCAGCCACCTTT+AGG - chr5_4:7043710-7043729 None:intergenic 45.0%
CCTAAAGGTGGCTGCAATTA+AGG + chr5_4:7043707-7043726 Msa0833980:intron 45.0%
TTGCAGCTTCAGATGAAGTG+AGG + chr5_4:7043954-7043973 Msa0833980:CDS 45.0%
ATATCTCCAGTCCTTAGGTC+AGG - chr5_4:7043986-7044005 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG - chr5_4:7043991-7044010 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG + chr5_4:7043988-7044007 Msa0833980:CDS 45.0%
AAGTTCCGGAGAACAAACGT+AGG + chr5_4:7044135-7044154 Msa0833980:CDS 45.0%
CGAAGAATTATTGCCGGTAC+AGG + chr5_4:7044224-7044243 Msa0833980:CDS 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG + chr5_4:7044329-7044348 Msa0833980:intron 45.0%
! ATACATGGTGATGCACAGCA+AGG - chr5_4:7044358-7044377 None:intergenic 45.0%
TGTCATGCCTATGCTAGTAC+TGG + chr5_4:7044590-7044609 Msa0833980:CDS 45.0%
CATGGTACCAGTACTAGCAT+AGG - chr5_4:7044600-7044619 None:intergenic 45.0%
!! CTATGCTAGTACTGGTACCA+TGG + chr5_4:7044598-7044617 Msa0833980:intron 45.0%
ATTGGACTCACTCACTCCAT+TGG + chr5_4:7044724-7044743 Msa0833980:intron 45.0%
GCACGATTACAACTCTCCAA+TGG - chr5_4:7044743-7044762 None:intergenic 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG + chr5_4:7045180-7045199 Msa0833980:CDS 45.0%
AGACCGTAGAGAGGAAGAAG+AGG - chr5_4:7042438-7042457 None:intergenic 50.0%
TAAGGAGGAAGACCGTAGAG+AGG - chr5_4:7042447-7042466 None:intergenic 50.0%
CTCTACGGTCTTCCTCCTTA+TGG + chr5_4:7042447-7042466 Msa0833980:exon 50.0%
TAAGTTACGAGAAGCGAGGG+TGG - chr5_4:7042675-7042694 None:intergenic 50.0%
GGGTAAGTTACGAGAAGCGA+GGG - chr5_4:7042678-7042697 None:intergenic 50.0%
AGGGTAAGTTACGAGAAGCG+AGG - chr5_4:7042679-7042698 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG - chr5_4:7042699-7042718 None:intergenic 50.0%
AATTGAGGTCGAAGAAGCCC+TGG - chr5_4:7042708-7042727 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG + chr5_4:7042775-7042794 Msa0833980:CDS 50.0%
CACATGAATAGGAGGCAAGC+GGG + chr5_4:7043294-7043313 Msa0833980:intron 50.0%
! CGCCGCTAAACCTTTTTGGA+TGG + chr5_4:7043327-7043346 Msa0833980:intron 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG + chr5_4:7043672-7043691 Msa0833980:intron 50.0%
GTCCTACTTGCAGGAAGTTC+CGG + chr5_4:7044121-7044140 Msa0833980:intron 50.0%
CGCGTCCGAAGAATTATTGC+CGG + chr5_4:7044218-7044237 Msa0833980:CDS 50.0%
GACTATCTCAACCCCTGTAC+CGG - chr5_4:7044240-7044259 None:intergenic 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG + chr5_4:7045185-7045204 Msa0833980:CDS 50.0%
CTTCCTTCGCACGTGTGGAA+CGG + chr5_4:7042362-7042381 Msa0833980:five_prime_UTR 55.0%
TATCCGTTCCACACGTGCGA+AGG - chr5_4:7042368-7042387 None:intergenic 55.0%
! GGATTCTGCATCTGAGGTGG+AGG + chr5_4:7042877-7042896 Msa0833980:CDS 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG - chr5_4:7042906-7042925 None:intergenic 55.0%
CGATAGTTGTCGTGTCCGTC+TGG + chr5_4:7043094-7043113 Msa0833980:intron 55.0%
! GCTGCGCCGCTAAACCTTTT+TGG + chr5_4:7043323-7043342 Msa0833980:intron 55.0%
GGTCAACAGCCTCTGATGCT+AGG + chr5_4:7043434-7043453 Msa0833980:intron 55.0%
TGAGGACCACTCCTGACCTA+AGG + chr5_4:7043972-7043991 Msa0833980:CDS 55.0%
ACCACTCCTGACCTAAGGAC+TGG + chr5_4:7043977-7043996 Msa0833980:CDS 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG - chr5_4:7043981-7044000 None:intergenic 55.0%
CTCCGGAACTTCCTGCAAGT+AGG - chr5_4:7044126-7044145 None:intergenic 55.0%
GCGGAGAAAGGCAAGAGTGA+GGG - chr5_4:7044278-7044297 None:intergenic 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG + chr5_4:7045189-7045208 Msa0833980:CDS 55.0%
GTCTTGCCTGCCTGACCTTT+CGG - chr5_4:7045198-7045217 None:intergenic 55.0%
CGTTCCACACGTGCGAAGGA+AGG - chr5_4:7042364-7042383 None:intergenic 60.0%
ACGAGAAGCGAGGGTGGAAG+CGG - chr5_4:7042669-7042688 None:intergenic 60.0%
CGCGGAGAAAGGCAAGAGTG+AGG - chr5_4:7044279-7044298 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 7042361 7045541 7042361 ID=Msa0833980;Name=Msa0833980
chr5_4 mRNA 7042361 7045541 7042361 ID=Msa0833980-mRNA-1;Parent=Msa0833980;Name=Msa0833980-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105|0.5|0.71|0.71|0.83|0.71|7|227|284
chr5_4 exon 7042361 7042489 7042361 ID=Msa0833980-mRNA-1:exon:3088;Parent=Msa0833980-mRNA-1
chr5_4 exon 7042608 7042949 7042608 ID=Msa0833980-mRNA-1:exon:3089;Parent=Msa0833980-mRNA-1
chr5_4 exon 7043935 7044021 7043935 ID=Msa0833980-mRNA-1:exon:3090;Parent=Msa0833980-mRNA-1
chr5_4 exon 7044134 7044267 7044134 ID=Msa0833980-mRNA-1:exon:3091;Parent=Msa0833980-mRNA-1
chr5_4 exon 7044398 7044453 7044398 ID=Msa0833980-mRNA-1:exon:3092;Parent=Msa0833980-mRNA-1
chr5_4 exon 7044559 7044611 7044559 ID=Msa0833980-mRNA-1:exon:3093;Parent=Msa0833980-mRNA-1
chr5_4 exon 7045156 7045541 7045156 ID=Msa0833980-mRNA-1:exon:3094;Parent=Msa0833980-mRNA-1
chr5_4 five_prime_UTR 7042361 7042465 7042361 ID=Msa0833980-mRNA-1:five_prime_utr;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7042466 7042489 7042466 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7042608 7042949 7042608 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7043935 7044021 7043935 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7044134 7044267 7044134 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7044398 7044453 7044398 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7044559 7044611 7044559 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 CDS 7045156 7045314 7045156 ID=Msa0833980-mRNA-1:cds;Parent=Msa0833980-mRNA-1
chr5_4 three_prime_UTR 7045315 7045541 7045315 ID=Msa0833980-mRNA-1:three_prime_utr;Parent=Msa0833980-mRNA-1
Gene Sequence

>Msa0833980

ATGGCTTCCCAAGTATTTCTTCAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCCTCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGTACAGGGGTTGAGATAGTCTTCCCAATGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAATTACTTCCAAGCTGCTGCATTTTGTGTTATTGTCATGCCTATGCTAGTACTGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATAAGGTCACACGCTGTTCATCATGTTCTTATTCTCAAAGTAATCTGCTGA

Protein sequence

>Msa0833980

MASQVFLQTLFAPNQCPPTKLGFSSACSASTLASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPMIEEVQTGRWEFGTSSSFNNYFQAAAFCVIVMPMLVLLLTKHQRNQSGKAPKGQAGKTVLSKRQASQILHFQMIRSHAVHHVLILKVIC*