AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577350 MtrunA17_Chr8g0376491 95.385 130 6 0 2 131 1 130 4.93e-88 260
Msa0577350 MtrunA17_Chr8g0376451 82.031 128 23 0 4 131 3 130 5.93e-75 227
Msa0577350 MtrunA17_Chr8g0376431 79.389 131 27 0 1 131 1 131 3.69e-66 204
Msa0577350 MtrunA17_Chr2g0312931 81.250 128 24 0 4 131 4 131 1.55e-65 203
Msa0577350 MtrunA17_Chr8g0376481 81.250 128 24 0 4 131 59 186 1.88e-64 201
Msa0577350 MtrunA17_Chr8g0376471 78.906 128 27 0 4 131 3 130 2.40e-63 197
Msa0577350 MtrunA17_Chr8g0376521 75.000 128 20 1 4 131 3 118 4.17e-58 179
Msa0577350 MtrunA17_Chr8g0376461 75.472 53 13 0 4 56 3 55 2.72e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577350 AT4G18360.3 80.469 128 25 0 4 131 3 130 1.15e-73 220
Msa0577350 AT4G18360.2 80.469 128 25 0 4 131 3 130 9.87e-73 220
Msa0577350 AT4G18360.1 80.469 128 25 0 4 131 3 130 9.13e-72 219
Msa0577350 AT4G18360.4 80.469 128 25 0 4 131 3 130 9.13e-72 219
Msa0577350 AT3G14420.1 82.031 128 23 0 4 131 3 130 6.62e-67 207
Msa0577350 AT3G14420.2 82.031 128 23 0 4 131 3 130 6.62e-67 207
Msa0577350 AT3G14420.3 82.031 128 23 0 4 131 3 130 7.96e-67 206
Msa0577350 AT3G14415.2 80.469 128 25 0 4 131 3 130 1.13e-64 201
Msa0577350 AT3G14415.1 80.469 128 25 0 4 131 3 130 1.13e-64 201
Msa0577350 AT3G14415.3 80.469 128 25 0 4 131 3 130 1.13e-64 201
Msa0577350 AT3G14420.4 82.883 111 19 0 21 131 1 111 5.55e-56 178
Msa0577350 AT3G14150.2 56.250 128 56 0 4 131 4 131 1.35e-44 149
Msa0577350 AT3G14150.1 56.250 128 56 0 4 131 4 131 1.35e-44 149
Msa0577350 AT3G14130.3 55.469 128 57 0 4 131 4 131 1.91e-43 146
Msa0577350 AT3G14130.1 55.469 128 57 0 4 131 4 131 1.91e-43 146
Msa0577350 AT3G14420.5 83.333 84 14 0 48 131 40 123 2.81e-35 125
Msa0577350 AT3G14420.6 83.333 84 14 0 48 131 46 129 3.36e-35 125
Msa0577350 AT3G14130.4 55.952 84 37 0 48 131 4 87 8.37e-24 94.0

Find 43 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATAGGCATTGATATTT+TGG 0.101254 4_1:-81689884 None:intergenic
GTTGAGGAGGTTGCTTCAAC+AGG 0.395753 4_1:+81690507 Msa0577350:CDS
GATTTGACGACAACTGTATT+CGG 0.401313 4_1:+81689859 Msa0577350:CDS
GCTAGAGCAGCATCAGCAGC+TGG 0.429151 4_1:+81690067 Msa0577350:CDS
CAGGGTGAGCCATCTGATGC+TGG 0.429724 4_1:-81689921 None:intergenic
CAAAATATCAATGCCTATCA+TGG 0.437565 4_1:+81689885 Msa0577350:CDS
GTCTTTATTATTATTTCCAC+AGG 0.439779 4_1:-81689560 None:intergenic
CCTATCATGGTTGCTCCTAC+AGG 0.442082 4_1:+81689898 Msa0577350:CDS
GTAATATACTCACATATAGT+TGG 0.443062 4_1:-81690548 None:intergenic
GAATCCTTGAGAATGCATTT+CGG 0.463806 4_1:-81689722 None:intergenic
CATCCGGAGCTGAAGATGAA+TGG 0.489213 4_1:+81689685 Msa0577350:CDS
CCTGTAGGAGCAACCATGAT+AGG 0.494745 4_1:-81689898 None:intergenic
TGAAGCAATTGCGAAGGAAA+AGG 0.507192 4_1:+81689635 Msa0577350:CDS
TAGTGGTCATAAATCATCTT+CGG 0.509596 4_1:-81689660 None:intergenic
ATTTATGACCACTATGCATC+CGG 0.514790 4_1:+81689669 Msa0577350:CDS
CTTACGTCAATAAGAATTCG+CGG 0.523739 4_1:-81689829 None:intergenic
GTAGAACCTGTGGTATTGAA+TGG 0.523865 4_1:-81689435 None:intergenic
ACTTCACCATTCAATACCAC+AGG 0.524799 4_1:+81689429 Msa0577350:five_prime_UTR
AGTCCATTCATCTTCAGCTC+CGG 0.537575 4_1:-81689688 None:intergenic
TCCTACAGGCCAGCATCAGA+TGG 0.549915 4_1:+81689912 Msa0577350:CDS
CATCAGATGGCTCACCCTGA+AGG 0.551255 4_1:+81689925 Msa0577350:CDS
AACATAACTTAGTTTAACTC+AGG 0.555001 4_1:+81690667 Msa0577350:three_prime_UTR
ATCAGCAGCTGGCACCATCA+TGG 0.558759 4_1:+81690078 Msa0577350:CDS
TGGTATTGAATGGTGAAGTA+AGG 0.565213 4_1:-81689425 None:intergenic
CAACACATAATATACCTTCA+GGG 0.566358 4_1:-81689939 None:intergenic
TAACTATTAAGATAAGAAGA+TGG 0.572060 4_1:+81689587 Msa0577350:exon
GCCATCTGATGCTGGCCTGT+AGG 0.574499 4_1:-81689913 None:intergenic
AGTTGGAGGAAACGAATGCC+AGG 0.577016 4_1:-81690531 None:intergenic
CTGTGACAGACACTAGCCAC+AGG 0.596253 4_1:+81690471 Msa0577350:intron
AGAACCGAAATGCATTCTCA+AGG 0.600628 4_1:+81689718 Msa0577350:CDS
CTTACTTTCAGAACATCCTG+TGG 0.607650 4_1:+81689544 Msa0577350:five_prime_UTR
CGAGTATGAAGCAATTGCGA+AGG 0.613426 4_1:+81689629 Msa0577350:CDS
ATATACTCACATATAGTTGG+AGG 0.614105 4_1:-81690545 None:intergenic
GAGGTTGCTTCAACAGGACC+TGG 0.614445 4_1:+81690513 Msa0577350:CDS
CTTCAGCTCCGGATGCATAG+TGG 0.615377 4_1:-81689677 None:intergenic
TGTTCTTTCGTTCAACGAGG+AGG 0.616888 4_1:-81690629 None:intergenic
TAGAGAAACAACACTGACAG+TGG 0.617962 4_1:-81689324 None:intergenic
TGTGACAGACACTAGCCACA+GGG 0.633960 4_1:+81690472 Msa0577350:intron
TGGCGGAAACCATACCATGA+TGG 0.636148 4_1:-81690092 None:intergenic
AGAGAAACAACACTGACAGT+GGG 0.638965 4_1:-81689323 None:intergenic
AAATGTTCTTTCGTTCAACG+AGG 0.678635 4_1:-81690632 None:intergenic
AACACTAAAAGTAGCCCCTG+TGG 0.698154 4_1:-81690487 None:intergenic
GTGACAGACACTAGCCACAG+GGG 0.743558 4_1:+81690473 Msa0577350:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTACTATTTTTAGTTT+CGG + chr4_1:81689473-81689492 Msa0577350:five_prime_UTR 15.0%
!! AAGTAAATAAGTACAATAAA+AGG - chr4_1:81690228-81690247 None:intergenic 15.0%
!! AAAAAATGAAATCGTTAAAA+AGG + chr4_1:81690333-81690352 Msa0577350:intron 15.0%
!! AAAAAGGATTTAGATTTAAA+TGG + chr4_1:81690349-81690368 Msa0577350:intron 15.0%
!!! TATGTTACTATTTTTAGTTT+CGG + chr4_1:81689473-81689492 Msa0577350:five_prime_UTR 15.0%
!! AAGTAAATAAGTACAATAAA+AGG - chr4_1:81690228-81690247 None:intergenic 15.0%
!! AAAAAATGAAATCGTTAAAA+AGG + chr4_1:81690333-81690352 Msa0577350:intron 15.0%
!! AAAAAGGATTTAGATTTAAA+TGG + chr4_1:81690349-81690368 Msa0577350:intron 15.0%
!! TAACTATTAAGATAAGAAGA+TGG + chr4_1:81689587-81689606 Msa0577350:exon 20.0%
!! TATCTTACTCTAATATAGAA+TGG + chr4_1:81690181-81690200 Msa0577350:intron 20.0%
!! TATTGTACTTATTTACTTGT+TGG + chr4_1:81690230-81690249 Msa0577350:intron 20.0%
!!! TTGTAATATTTTTTACAACC+TGG + chr4_1:81690429-81690448 Msa0577350:intron 20.0%
!!! TGTAATATTTTTTACAACCT+GGG + chr4_1:81690430-81690449 Msa0577350:intron 20.0%
!! TAACTATTAAGATAAGAAGA+TGG + chr4_1:81689587-81689606 Msa0577350:exon 20.0%
!! TATCTTACTCTAATATAGAA+TGG + chr4_1:81690181-81690200 Msa0577350:intron 20.0%
!! TATTGTACTTATTTACTTGT+TGG + chr4_1:81690230-81690249 Msa0577350:intron 20.0%
!!! TTGTAATATTTTTTACAACC+TGG + chr4_1:81690429-81690448 Msa0577350:intron 20.0%
!!! TGTAATATTTTTTACAACCT+GGG + chr4_1:81690430-81690449 Msa0577350:intron 20.0%
! GTCTTTATTATTATTTCCAC+AGG - chr4_1:81689563-81689582 None:intergenic 25.0%
! ACATACAAGGGTAAATTAAA+TGG - chr4_1:81689789-81689808 None:intergenic 25.0%
! AAACTTAAATGTCAAAAGAC+TGG - chr4_1:81689968-81689987 None:intergenic 25.0%
! ACTAGAGTAGAGAATAAATA+TGG - chr4_1:81690115-81690134 None:intergenic 25.0%
! AAGCAATATACTTCTTGATT+TGG - chr4_1:81690144-81690163 None:intergenic 25.0%
!! AGATTTAAATGGTTTGTCAA+TGG + chr4_1:81690360-81690379 Msa0577350:intron 25.0%
! GTAATATACTCACATATAGT+TGG - chr4_1:81690551-81690570 None:intergenic 25.0%
! AACATAACTTAGTTTAACTC+AGG + chr4_1:81690667-81690686 Msa0577350:three_prime_UTR 25.0%
! GTCTTTATTATTATTTCCAC+AGG - chr4_1:81689563-81689582 None:intergenic 25.0%
! ACATACAAGGGTAAATTAAA+TGG - chr4_1:81689789-81689808 None:intergenic 25.0%
! AAACTTAAATGTCAAAAGAC+TGG - chr4_1:81689968-81689987 None:intergenic 25.0%
! ACTAGAGTAGAGAATAAATA+TGG - chr4_1:81690115-81690134 None:intergenic 25.0%
! AAGCAATATACTTCTTGATT+TGG - chr4_1:81690144-81690163 None:intergenic 25.0%
!! AGATTTAAATGGTTTGTCAA+TGG + chr4_1:81690360-81690379 Msa0577350:intron 25.0%
! GTAATATACTCACATATAGT+TGG - chr4_1:81690551-81690570 None:intergenic 25.0%
! AACATAACTTAGTTTAACTC+AGG + chr4_1:81690667-81690686 Msa0577350:three_prime_UTR 25.0%
!!! CTTATTTTTTGTAGAACCTG+TGG - chr4_1:81689448-81689467 None:intergenic 30.0%
TAGTGGTCATAAATCATCTT+CGG - chr4_1:81689663-81689682 None:intergenic 30.0%
! TGTTTTCAGCAAACATACAA+GGG - chr4_1:81689801-81689820 None:intergenic 30.0%
!!! CATGATAGGCATTGATATTT+TGG - chr4_1:81689887-81689906 None:intergenic 30.0%
CAAAATATCAATGCCTATCA+TGG + chr4_1:81689885-81689904 Msa0577350:CDS 30.0%
CAACACATAATATACCTTCA+GGG - chr4_1:81689942-81689961 None:intergenic 30.0%
AGAGTAGAGAATAAATATGG+CGG - chr4_1:81690112-81690131 None:intergenic 30.0%
TTGTTGGCAAATGTAATGTA+AGG + chr4_1:81690246-81690265 Msa0577350:intron 30.0%
ATATACTCACATATAGTTGG+AGG - chr4_1:81690548-81690567 None:intergenic 30.0%
!!! CTTATTTTTTGTAGAACCTG+TGG - chr4_1:81689448-81689467 None:intergenic 30.0%
TAGTGGTCATAAATCATCTT+CGG - chr4_1:81689663-81689682 None:intergenic 30.0%
! TGTTTTCAGCAAACATACAA+GGG - chr4_1:81689801-81689820 None:intergenic 30.0%
!!! CATGATAGGCATTGATATTT+TGG - chr4_1:81689887-81689906 None:intergenic 30.0%
CAAAATATCAATGCCTATCA+TGG + chr4_1:81689885-81689904 Msa0577350:CDS 30.0%
CAACACATAATATACCTTCA+GGG - chr4_1:81689942-81689961 None:intergenic 30.0%
AGAGTAGAGAATAAATATGG+CGG - chr4_1:81690112-81690131 None:intergenic 30.0%
TTGTTGGCAAATGTAATGTA+AGG + chr4_1:81690246-81690265 Msa0577350:intron 30.0%
ATATACTCACATATAGTTGG+AGG - chr4_1:81690548-81690567 None:intergenic 30.0%
! TGGTATTGAATGGTGAAGTA+AGG - chr4_1:81689428-81689447 None:intergenic 35.0%
ATTTATGACCACTATGCATC+CGG + chr4_1:81689669-81689688 Msa0577350:CDS 35.0%
GAATCCTTGAGAATGCATTT+CGG - chr4_1:81689725-81689744 None:intergenic 35.0%
! CTGTTTTCAGCAAACATACA+AGG - chr4_1:81689802-81689821 None:intergenic 35.0%
! TGTTTGCTGAAAACAGATTC+AGG + chr4_1:81689806-81689825 Msa0577350:intron 35.0%
CTTACGTCAATAAGAATTCG+CGG - chr4_1:81689832-81689851 None:intergenic 35.0%
GATTTGACGACAACTGTATT+CGG + chr4_1:81689859-81689878 Msa0577350:CDS 35.0%
GCAACACATAATATACCTTC+AGG - chr4_1:81689943-81689962 None:intergenic 35.0%
CTGCATAAGAATTGCATGAT+TGG - chr4_1:81690033-81690052 None:intergenic 35.0%
CAATCATGCAATTCTTATGC+AGG + chr4_1:81690031-81690050 Msa0577350:intron 35.0%
AGGTTAGAATTCAAGTGAAG+TGG + chr4_1:81690266-81690285 Msa0577350:intron 35.0%
GGTTAGAATTCAAGTGAAGT+GGG + chr4_1:81690267-81690286 Msa0577350:intron 35.0%
TGAAAATGGAGTAGTGTATG+AGG + chr4_1:81690290-81690309 Msa0577350:intron 35.0%
AACGCACTAAGTTAGATTCA+TGG - chr4_1:81690396-81690415 None:intergenic 35.0%
CTTATGAAAATGAATCTCCC+AGG - chr4_1:81690450-81690469 None:intergenic 35.0%
AAATGTTCTTTCGTTCAACG+AGG - chr4_1:81690635-81690654 None:intergenic 35.0%
! TGGTATTGAATGGTGAAGTA+AGG - chr4_1:81689428-81689447 None:intergenic 35.0%
ATTTATGACCACTATGCATC+CGG + chr4_1:81689669-81689688 Msa0577350:CDS 35.0%
GAATCCTTGAGAATGCATTT+CGG - chr4_1:81689725-81689744 None:intergenic 35.0%
! CTGTTTTCAGCAAACATACA+AGG - chr4_1:81689802-81689821 None:intergenic 35.0%
! TGTTTGCTGAAAACAGATTC+AGG + chr4_1:81689806-81689825 Msa0577350:intron 35.0%
CTTACGTCAATAAGAATTCG+CGG - chr4_1:81689832-81689851 None:intergenic 35.0%
GATTTGACGACAACTGTATT+CGG + chr4_1:81689859-81689878 Msa0577350:CDS 35.0%
GCAACACATAATATACCTTC+AGG - chr4_1:81689943-81689962 None:intergenic 35.0%
CTGCATAAGAATTGCATGAT+TGG - chr4_1:81690033-81690052 None:intergenic 35.0%
CAATCATGCAATTCTTATGC+AGG + chr4_1:81690031-81690050 Msa0577350:intron 35.0%
AGGTTAGAATTCAAGTGAAG+TGG + chr4_1:81690266-81690285 Msa0577350:intron 35.0%
GGTTAGAATTCAAGTGAAGT+GGG + chr4_1:81690267-81690286 Msa0577350:intron 35.0%
TGAAAATGGAGTAGTGTATG+AGG + chr4_1:81690290-81690309 Msa0577350:intron 35.0%
AACGCACTAAGTTAGATTCA+TGG - chr4_1:81690396-81690415 None:intergenic 35.0%
CTTATGAAAATGAATCTCCC+AGG - chr4_1:81690450-81690469 None:intergenic 35.0%
AAATGTTCTTTCGTTCAACG+AGG - chr4_1:81690635-81690654 None:intergenic 35.0%
AGAGAAACAACACTGACAGT+GGG - chr4_1:81689326-81689345 None:intergenic 40.0%
TAGAGAAACAACACTGACAG+TGG - chr4_1:81689327-81689346 None:intergenic 40.0%
ACTTCACCATTCAATACCAC+AGG + chr4_1:81689429-81689448 Msa0577350:five_prime_UTR 40.0%
! GTAGAACCTGTGGTATTGAA+TGG - chr4_1:81689438-81689457 None:intergenic 40.0%
CTTACTTTCAGAACATCCTG+TGG + chr4_1:81689544-81689563 Msa0577350:five_prime_UTR 40.0%
TGAAGCAATTGCGAAGGAAA+AGG + chr4_1:81689635-81689654 Msa0577350:CDS 40.0%
AGAACCGAAATGCATTCTCA+AGG + chr4_1:81689718-81689737 Msa0577350:CDS 40.0%
! AGGAAGCATGTTAGTAAGCA+TGG - chr4_1:81690208-81690227 None:intergenic 40.0%
TCAAGTGAAGTGGGTGAAAA+TGG + chr4_1:81690276-81690295 Msa0577350:intron 40.0%
AGAGAAACAACACTGACAGT+GGG - chr4_1:81689326-81689345 None:intergenic 40.0%
TAGAGAAACAACACTGACAG+TGG - chr4_1:81689327-81689346 None:intergenic 40.0%
ACTTCACCATTCAATACCAC+AGG + chr4_1:81689429-81689448 Msa0577350:five_prime_UTR 40.0%
! GTAGAACCTGTGGTATTGAA+TGG - chr4_1:81689438-81689457 None:intergenic 40.0%
CTTACTTTCAGAACATCCTG+TGG + chr4_1:81689544-81689563 Msa0577350:five_prime_UTR 40.0%
TGAAGCAATTGCGAAGGAAA+AGG + chr4_1:81689635-81689654 Msa0577350:CDS 40.0%
AGAACCGAAATGCATTCTCA+AGG + chr4_1:81689718-81689737 Msa0577350:CDS 40.0%
! AGGAAGCATGTTAGTAAGCA+TGG - chr4_1:81690208-81690227 None:intergenic 40.0%
TCAAGTGAAGTGGGTGAAAA+TGG + chr4_1:81690276-81690295 Msa0577350:intron 40.0%
CGAGTATGAAGCAATTGCGA+AGG + chr4_1:81689629-81689648 Msa0577350:CDS 45.0%
AGTCCATTCATCTTCAGCTC+CGG - chr4_1:81689691-81689710 None:intergenic 45.0%
AACACTAAAAGTAGCCCCTG+TGG - chr4_1:81690490-81690509 None:intergenic 45.0%
!!! AGGGGCTACTTTTAGTGTTG+AGG + chr4_1:81690491-81690510 Msa0577350:CDS 45.0%
!!! GGCTACTTTTAGTGTTGAGG+AGG + chr4_1:81690494-81690513 Msa0577350:CDS 45.0%
TGTTCTTTCGTTCAACGAGG+AGG - chr4_1:81690632-81690651 None:intergenic 45.0%
CGAGTATGAAGCAATTGCGA+AGG + chr4_1:81689629-81689648 Msa0577350:CDS 45.0%
AGTCCATTCATCTTCAGCTC+CGG - chr4_1:81689691-81689710 None:intergenic 45.0%
AACACTAAAAGTAGCCCCTG+TGG - chr4_1:81690490-81690509 None:intergenic 45.0%
!!! AGGGGCTACTTTTAGTGTTG+AGG + chr4_1:81690491-81690510 Msa0577350:CDS 45.0%
!!! GGCTACTTTTAGTGTTGAGG+AGG + chr4_1:81690494-81690513 Msa0577350:CDS 45.0%
TGTTCTTTCGTTCAACGAGG+AGG - chr4_1:81690632-81690651 None:intergenic 45.0%
CATCCGGAGCTGAAGATGAA+TGG + chr4_1:81689685-81689704 Msa0577350:CDS 50.0%
CCTGTAGGAGCAACCATGAT+AGG - chr4_1:81689901-81689920 None:intergenic 50.0%
CCTATCATGGTTGCTCCTAC+AGG + chr4_1:81689898-81689917 Msa0577350:CDS 50.0%
TGGCGGAAACCATACCATGA+TGG - chr4_1:81690095-81690114 None:intergenic 50.0%
TGTGACAGACACTAGCCACA+GGG + chr4_1:81690472-81690491 Msa0577350:intron 50.0%
GTTGAGGAGGTTGCTTCAAC+AGG + chr4_1:81690507-81690526 Msa0577350:CDS 50.0%
AGTTGGAGGAAACGAATGCC+AGG - chr4_1:81690534-81690553 None:intergenic 50.0%
CATCCGGAGCTGAAGATGAA+TGG + chr4_1:81689685-81689704 Msa0577350:CDS 50.0%
CCTGTAGGAGCAACCATGAT+AGG - chr4_1:81689901-81689920 None:intergenic 50.0%
CCTATCATGGTTGCTCCTAC+AGG + chr4_1:81689898-81689917 Msa0577350:CDS 50.0%
TGGCGGAAACCATACCATGA+TGG - chr4_1:81690095-81690114 None:intergenic 50.0%
TGTGACAGACACTAGCCACA+GGG + chr4_1:81690472-81690491 Msa0577350:intron 50.0%
GTTGAGGAGGTTGCTTCAAC+AGG + chr4_1:81690507-81690526 Msa0577350:CDS 50.0%
AGTTGGAGGAAACGAATGCC+AGG - chr4_1:81690534-81690553 None:intergenic 50.0%
CTTCAGCTCCGGATGCATAG+TGG - chr4_1:81689680-81689699 None:intergenic 55.0%
TCCTACAGGCCAGCATCAGA+TGG + chr4_1:81689912-81689931 Msa0577350:CDS 55.0%
CATCAGATGGCTCACCCTGA+AGG + chr4_1:81689925-81689944 Msa0577350:CDS 55.0%
ATCAGCAGCTGGCACCATCA+TGG + chr4_1:81690078-81690097 Msa0577350:CDS 55.0%
CAGCTGGCACCATCATGGTA+TGG + chr4_1:81690083-81690102 Msa0577350:intron 55.0%
CTGTGACAGACACTAGCCAC+AGG + chr4_1:81690471-81690490 Msa0577350:intron 55.0%
GTGACAGACACTAGCCACAG+GGG + chr4_1:81690473-81690492 Msa0577350:intron 55.0%
GAGGTTGCTTCAACAGGACC+TGG + chr4_1:81690513-81690532 Msa0577350:CDS 55.0%
CTTCAGCTCCGGATGCATAG+TGG - chr4_1:81689680-81689699 None:intergenic 55.0%
TCCTACAGGCCAGCATCAGA+TGG + chr4_1:81689912-81689931 Msa0577350:CDS 55.0%
CATCAGATGGCTCACCCTGA+AGG + chr4_1:81689925-81689944 Msa0577350:CDS 55.0%
ATCAGCAGCTGGCACCATCA+TGG + chr4_1:81690078-81690097 Msa0577350:CDS 55.0%
CAGCTGGCACCATCATGGTA+TGG + chr4_1:81690083-81690102 Msa0577350:intron 55.0%
CTGTGACAGACACTAGCCAC+AGG + chr4_1:81690471-81690490 Msa0577350:intron 55.0%
GTGACAGACACTAGCCACAG+GGG + chr4_1:81690473-81690492 Msa0577350:intron 55.0%
GAGGTTGCTTCAACAGGACC+TGG + chr4_1:81690513-81690532 Msa0577350:CDS 55.0%
! GCCATCTGATGCTGGCCTGT+AGG - chr4_1:81689916-81689935 None:intergenic 60.0%
CAGGGTGAGCCATCTGATGC+TGG - chr4_1:81689924-81689943 None:intergenic 60.0%
GCTAGAGCAGCATCAGCAGC+TGG + chr4_1:81690067-81690086 Msa0577350:CDS 60.0%
! GCCATCTGATGCTGGCCTGT+AGG - chr4_1:81689916-81689935 None:intergenic 60.0%
CAGGGTGAGCCATCTGATGC+TGG - chr4_1:81689924-81689943 None:intergenic 60.0%
GCTAGAGCAGCATCAGCAGC+TGG + chr4_1:81690067-81690086 Msa0577350:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81689314 81690700 81689314 ID=Msa0577350;Name=Msa0577350
chr4_1 mRNA 81689314 81690700 81689314 ID=Msa0577350-mRNA-1;Parent=Msa0577350;Name=Msa0577350-mRNA-1;_AED=0.27;_eAED=0.27;_QI=292|1|1|1|1|1|4|125|135
chr4_1 exon 81689314 81689745 81689314 ID=Msa0577350-mRNA-1:exon:29437;Parent=Msa0577350-mRNA-1
chr4_1 exon 81689822 81689946 81689822 ID=Msa0577350-mRNA-1:exon:29438;Parent=Msa0577350-mRNA-1
chr4_1 exon 81690053 81690099 81690053 ID=Msa0577350-mRNA-1:exon:29439;Parent=Msa0577350-mRNA-1
chr4_1 exon 81690480 81690700 81690480 ID=Msa0577350-mRNA-1:exon:29440;Parent=Msa0577350-mRNA-1
chr4_1 five_prime_UTR 81689314 81689605 81689314 ID=Msa0577350-mRNA-1:five_prime_utr;Parent=Msa0577350-mRNA-1
chr4_1 CDS 81689606 81689745 81689606 ID=Msa0577350-mRNA-1:cds;Parent=Msa0577350-mRNA-1
chr4_1 CDS 81689822 81689946 81689822 ID=Msa0577350-mRNA-1:cds;Parent=Msa0577350-mRNA-1
chr4_1 CDS 81690053 81690099 81690053 ID=Msa0577350-mRNA-1:cds;Parent=Msa0577350-mRNA-1
chr4_1 CDS 81690480 81690575 81690480 ID=Msa0577350-mRNA-1:cds;Parent=Msa0577350-mRNA-1
chr4_1 three_prime_UTR 81690576 81690700 81690576 ID=Msa0577350-mRNA-1:three_prime_utr;Parent=Msa0577350-mRNA-1
Gene Sequence

>Msa0577350

ATGGTTATTATAACAAATGTTAGCGAGTATGAAGCAATTGCGAAGGAAAAGGTGCCGAAGATGATTTATGACCACTATGCATCCGGAGCTGAAGATGAATGGACTTTGAAAGAGAACCGAAATGCATTCTCAAGGATTCTATTCAGGCCGCGAATTCTTATTGACGTAAGCAAGATAGATTTGACGACAACTGTATTCGGCTCCAAAATATCAATGCCTATCATGGTTGCTCCTACAGGCCAGCATCAGATGGCTCACCCTGAAGGAGAATGCGCTACTGCTAGAGCAGCATCAGCAGCTGGCACCATCATGACACTAGCCACAGGGGCTACTTTTAGTGTTGAGGAGGTTGCTTCAACAGGACCTGGCATTCGTTTCCTCCAACTATATGTGAGTATATTACTCTAA

Protein sequence

>Msa0577350

MVIITNVSEYEAIAKEKVPKMIYDHYASGAEDEWTLKENRNAFSRILFRPRILIDVSKIDLTTTVFGSKISMPIMVAPTGQHQMAHPEGECATARAASAAGTIMTLATGATFSVEEVASTGPGIRFLQLYVSILL*