AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388010 MtrunA17_Chr5g0399711 85.427 199 21 3 1 196 1 194 1.20e-117 337
Msa1388010 MtrunA17_Chr3g0102051 44.144 111 58 1 90 196 77 187 3.65e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388010 AT4G17560.1 62.500 136 37 3 62 196 68 190 4.00e-43 147
Msa1388010 AT5G47190.1 51.934 181 66 3 31 196 20 194 7.99e-42 144
Msa1388010 AT1G24240.1 49.351 77 39 0 120 196 112 188 2.86e-21 90.1
Msa1388010 AT4G11630.1 49.351 77 39 0 120 196 115 191 3.30e-21 89.7
Msa1388010 AT5G11750.1 49.351 77 39 0 120 196 119 195 3.92e-21 89.7
Msa1388010 AT5G11750.2 47.436 78 41 0 119 196 142 219 2.09e-20 88.2

Find 104 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCCGCATGCTTATTTC+TGG 0.185236 tig0021032:-57545 Msa1388010:three_prime_UTR
CAAACTGGAAGATGGGAATT+TGG 0.197875 tig0021032:-58595 Msa1388010:CDS
TATGACAATACCTTTATAAA+TGG 0.225579 tig0021032:+58844 None:intergenic
TTTCTTAGAGAATATATTAA+AGG 0.251560 tig0021032:+57617 None:intergenic
CTCTACGGTCTTCCTCCTTA+TGG 0.262331 tig0021032:-60560 Msa1388010:exon
CTTCTTCGACCTCAATTTCA+TGG 0.303030 tig0021032:-60296 Msa1388010:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 tig0021032:-60151 Msa1388010:CDS
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 tig0021032:-58885 Msa1388010:intron
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 tig0021032:-60539 Msa1388010:intron
GTAACTTACCCTTCATTTCC+AGG 0.329154 tig0021032:-60320 Msa1388010:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 tig0021032:-60082 Msa1388010:CDS
TCATTTGAAAGTGGAGAATC+TGG 0.340991 tig0021032:+57764 None:intergenic
CGTAGGTTATCCATTTATAA+AGG 0.341243 tig0021032:-58854 Msa1388010:CDS
TTAATATATTCTCTAAGAAA+TGG 0.343677 tig0021032:-57614 Msa1388010:three_prime_UTR
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 tig0021032:+60221 None:intergenic
GTCTTGCCTGCCTGACCTTT+CGG 0.348430 tig0021032:+57811 None:intergenic
ACTTTGATTTCTTTGATGTT+TGG 0.358077 tig0021032:+57843 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 tig0021032:+60372 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 tig0021032:-60081 Msa1388010:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 tig0021032:+60186 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 tig0021032:+60387 None:intergenic
CGAAGAATTATTGCCGGTAC+AGG 0.382604 tig0021032:-58782 Msa1388010:CDS
AAACTGGAAGATGGGAATTT+GGG 0.388500 tig0021032:-58594 Msa1388010:CDS
CAAATTTCTCAATATTATCA+AGG 0.389659 tig0021032:+57574 None:intergenic
GGATAATGCTGATGAAGTTT+CGG 0.394551 tig0021032:-60175 Msa1388010:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 tig0021032:-60157 Msa1388010:CDS
TTCTCCACTTTCAAATGATA+AGG 0.412200 tig0021032:-57759 Msa1388010:CDS
TTCTTAGAGAATATATTAAA+GGG 0.425998 tig0021032:+57618 None:intergenic
CGCGTCCGAAGAATTATTGC+CGG 0.429331 tig0021032:-58788 Msa1388010:CDS
CCACAATATCTCCAGTCCTT+AGG 0.437951 tig0021032:+59019 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 tig0021032:-59080 Msa1388010:intron
GATAACCTACGTTTGTTCTC+CGG 0.447583 tig0021032:+58866 None:intergenic
AAATCAAAATAAACAAATTG+TGG 0.467588 tig0021032:+57669 None:intergenic
AAGAGGTTCAAACTGGAAGA+TGG 0.470246 tig0021032:-58603 Msa1388010:CDS
AGGATAGAAGAGGTTCAAAC+TGG 0.476109 tig0021032:-58610 Msa1388010:CDS
ACGAGAAGCGAGGGTGGAAG+CGG 0.476314 tig0021032:+60341 None:intergenic
TTTCCTCTTCTTCCTCTCTA+CGG 0.477516 tig0021032:-60575 Msa1388010:five_prime_UTR
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 tig0021032:+60311 None:intergenic
GAAATACTTGGGAAGCCATA+AGG 0.484706 tig0021032:+60545 None:intergenic
GTAATGTATTCATTAGTGCT+TGG 0.487341 tig0021032:+57515 None:intergenic
GACTATCTCAACCCCTGTAC+CGG 0.490009 tig0021032:+58769 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 tig0021032:-60196 Msa1388010:CDS
ATAAAACCTGAAGAAATACT+TGG 0.497075 tig0021032:+60533 None:intergenic
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 tig0021032:+60104 None:intergenic
TGGTAAAGCACCGAAAGGTC+AGG 0.504557 tig0021032:-57821 Msa1388010:CDS
AATCAAAATAAACAAATTGT+GGG 0.505914 tig0021032:+57670 None:intergenic
CAATGTCCTCCAACAAAGCT+AGG 0.507926 tig0021032:-60381 Msa1388010:CDS
CTGTACCGGCAATAATTCTT+CGG 0.509388 tig0021032:+58783 None:intergenic
TCAAAGTAATCTGCTGATCT+CGG 0.512334 tig0021032:-57708 Msa1388010:exon
TTTGGATTCTGCATCTGAGG+TGG 0.512535 tig0021032:-60133 Msa1388010:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 tig0021032:+59024 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 tig0021032:-59019 Msa1388010:CDS
TGTCATGCCTATGCTAGTAC+TGG 0.523017 tig0021032:-58416 Msa1388010:intron
CAGTCCTTCCTTCGCACGTG+TGG 0.528105 tig0021032:-60650 None:intergenic
AAATTTCTCAATATTATCAA+GGG 0.530446 tig0021032:+57575 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 tig0021032:+60215 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 tig0021032:-60130 Msa1388010:CDS
GTGACCTTATCATTTGAAAG+TGG 0.534354 tig0021032:+57755 None:intergenic
GAAGAATTATTGCCGGTACA+GGG 0.534441 tig0021032:-58781 Msa1388010:CDS
TAACTTACCCTTCATTTCCA+GGG 0.543085 tig0021032:-60319 Msa1388010:CDS
AGAGGTTCAAACTGGAAGAT+GGG 0.543482 tig0021032:-58602 Msa1388010:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 tig0021032:-59007 Msa1388010:intron
TATCCGTTCCACACGTGCGA+AGG 0.544362 tig0021032:+60642 None:intergenic
TTAAGCTTGGTGATGTTATG+GGG 0.548890 tig0021032:-60080 Msa1388010:CDS
GTCATATCAAGACAAAATGC+TGG 0.549163 tig0021032:-58827 Msa1388010:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 tig0021032:+60302 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 tig0021032:+60287 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 tig0021032:+60375 None:intergenic
TAACACAAAATGCAGCAGCT+TGG 0.561594 tig0021032:+58440 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 tig0021032:-59030 Msa1388010:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 tig0021032:+60246 None:intergenic
CTTCCTTCGCACGTGTGGAA+CGG 0.567537 tig0021032:-60645 Msa1388010:five_prime_UTR
AGACAAACTCGTGTTAAGCT+TGG 0.574922 tig0021032:-60093 Msa1388010:CDS
AGACCGTAGAGAGGAAGAAG+AGG 0.581223 tig0021032:+60572 None:intergenic
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 tig0021032:+59029 None:intergenic
TGTGGAACGGATAGAAGAAA+CGG 0.583971 tig0021032:-60632 Msa1388010:five_prime_UTR
AGCTTAACACGAGTTTGTCT+AGG 0.586483 tig0021032:+60096 None:intergenic
CGTTCCACACGTGCGAAGGA+AGG 0.586778 tig0021032:+60646 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 tig0021032:-59035 Msa1388010:CDS
TAAAACCTGAAGAAATACTT+GGG 0.592119 tig0021032:+60534 None:intergenic
CATTTGAAAGTGGAGAATCT+GGG 0.592345 tig0021032:+57765 None:intergenic
TAAGTTACGAGAAGCGAGGG+TGG 0.596133 tig0021032:+60335 None:intergenic
TGTGCAGATATTGCATAAGA+GGG 0.596182 tig0021032:-59079 Msa1388010:intron
TGTTGTGATTAGGATAGAAG+AGG 0.604801 tig0021032:-58620 Msa1388010:intron
AAGAATTATTGCCGGTACAG+GGG 0.609341 tig0021032:-58780 Msa1388010:CDS
AAACTAGGTTTAGCAATGAG+AGG 0.610020 tig0021032:+60261 None:intergenic
GGGTAAGTTACGAGAAGCGA+GGG 0.612377 tig0021032:+60332 None:intergenic
AAAGCACCGAAAGGTCAGGC+AGG 0.614155 tig0021032:-57817 Msa1388010:CDS
GATGAAGTTTCGGAAACTGA+AGG 0.614399 tig0021032:-60165 Msa1388010:CDS
TAAGGAGGAAGACCGTAGAG+AGG 0.625148 tig0021032:+60563 None:intergenic
GAGAGCTGATTCCAATTCCG+AGG 0.627170 tig0021032:-60232 Msa1388010:CDS
CATGGTACCAGTACTAGCAT+AGG 0.633475 tig0021032:+58409 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 tig0021032:+60264 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 tig0021032:+60099 None:intergenic
AAACATCAAAGAAATCAAAG+TGG 0.650615 tig0021032:-57841 Msa1388010:CDS
CAAAGTGGTAAAGCACCGAA+AGG 0.655009 tig0021032:-57826 Msa1388010:CDS
ATACTTGGGAAGCCATAAGG+AGG 0.658948 tig0021032:+60548 None:intergenic
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 tig0021032:-59053 Msa1388010:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 tig0021032:-60079 Msa1388010:intron
TTCTACCAGAAATAAGCATG+CGG 0.676413 tig0021032:+57540 None:intergenic
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 tig0021032:+60312 None:intergenic
GCATAATGTGACAACTGACA+AGG 0.682976 tig0021032:+57479 None:intergenic
AGGGTAAGTTACGAGAAGCG+AGG 0.688532 tig0021032:+60331 None:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 tig0021032:-58871 Msa1388010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTTATAATAGAAAATT+TGG - tig0021032:58365-58384 Msa1388010:intron 15.0%
!!! CTATTTCATTTTCATATATT+TGG + tig0021032:59634-59653 None:intergenic 15.0%
!! GTTTATGAAATATGATATTA+AGG - tig0021032:60096-60115 Msa1388010:CDS 15.0%
!! AATCAAAATAAACAAATTGT+GGG + tig0021032:60466-60485 None:intergenic 15.0%
!! AAATCAAAATAAACAAATTG+TGG + tig0021032:60467-60486 None:intergenic 15.0%
!! TTCTTAGAGAATATATTAAA+GGG + tig0021032:60518-60537 None:intergenic 15.0%
!! TTTCTTAGAGAATATATTAA+AGG + tig0021032:60519-60538 None:intergenic 15.0%
!!! TTAATATATTCTCTAAGAAA+TGG - tig0021032:60519-60538 Msa1388010:intron 15.0%
!! AAATTTCTCAATATTATCAA+GGG + tig0021032:60561-60580 None:intergenic 15.0%
!!! AAGTATTTGTTACAATGAAT+TGG + tig0021032:57657-57676 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG + tig0021032:58308-58327 None:intergenic 20.0%
!! AATATTACTTACACATGAAT+AGG - tig0021032:58409-58428 Msa1388010:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG + tig0021032:58649-58668 None:intergenic 20.0%
!! CAAAAATCCAAATTCTAATA+TGG + tig0021032:58710-58729 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG - tig0021032:58708-58727 Msa1388010:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG + tig0021032:58990-59009 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG - tig0021032:58989-59008 Msa1388010:intron 20.0%
!! TCAAATTAATATGTTGAAGA+AGG - tig0021032:59187-59206 Msa1388010:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG - tig0021032:59188-59207 Msa1388010:intron 20.0%
!! TATGACAATACCTTTATAAA+TGG + tig0021032:59292-59311 None:intergenic 20.0%
!!! AATAAACGCTTCATTTTATA+AGG + tig0021032:60210-60229 None:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+TGG - tig0021032:60209-60228 Msa1388010:CDS 20.0%
!! CAAATTTCTCAATATTATCA+AGG + tig0021032:60562-60581 None:intergenic 20.0%
! TAAAACCTGAAGAAATACTT+GGG + tig0021032:57602-57621 None:intergenic 25.0%
! ATAAAACCTGAAGAAATACT+TGG + tig0021032:57603-57622 None:intergenic 25.0%
! TTAATAACAGTATAGAGTCA+TGG + tig0021032:58093-58112 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG - tig0021032:58325-58344 Msa1388010:intron 25.0%
! TACAACACATTTAATGTGTT+GGG + tig0021032:58786-58805 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG + tig0021032:58879-58898 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG - tig0021032:58879-58898 Msa1388010:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG - tig0021032:58887-58906 Msa1388010:intron 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG + tig0021032:58991-59010 None:intergenic 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG - tig0021032:58988-59007 Msa1388010:intron 25.0%
! ATAAGATGATATGATTTCTG+TGG - tig0021032:59213-59232 Msa1388010:intron 25.0%
! TAATCCCTATTAAATTATCG+CGG + tig0021032:59424-59443 None:intergenic 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG - tig0021032:59774-59793 Msa1388010:intron 25.0%
! ACCAATTTCTTAACAATGAA+AGG + tig0021032:59778-59797 None:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG - tig0021032:59780-59799 Msa1388010:intron 25.0%
! ATATCCTTGATCTTACAAAT+TGG - tig0021032:59833-59852 Msa1388010:intron 25.0%
! GATATCATTAAACAACAACT+AGG + tig0021032:59940-59959 None:intergenic 25.0%
!!! CTTTGCATTATTTTTCTCTA+AGG - tig0021032:60047-60066 Msa1388010:intron 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG + tig0021032:60198-60217 None:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG + tig0021032:60293-60312 None:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG - tig0021032:60292-60311 Msa1388010:CDS 25.0%
TGGATAATAATGAGATGAGA+GGG + tig0021032:57637-57656 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG + tig0021032:57638-57657 None:intergenic 30.0%
AAATGAAATCTCATGTGTGT+TGG + tig0021032:58187-58206 None:intergenic 30.0%
ATTACTTACACATGAATAGG+AGG - tig0021032:58412-58431 Msa1388010:intron 30.0%
TATGAGCTCTCATTTAACAA+AGG + tig0021032:58687-58706 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG - tig0021032:58700-58719 Msa1388010:intron 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG + tig0021032:58744-58763 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG - tig0021032:58743-58762 Msa1388010:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG + tig0021032:58769-58788 None:intergenic 30.0%
CTACAACACATTTAATGTGT+TGG + tig0021032:58787-58806 None:intergenic 30.0%
CATTTCATTTGCCATCATTT+CGG + tig0021032:58812-58831 None:intergenic 30.0%
ATCTTCCAACATATTTACCT+TGG - tig0021032:58859-58878 Msa1388010:CDS 30.0%
TTGATCCAAGGTAAATATGT+TGG + tig0021032:58867-58886 None:intergenic 30.0%
AGATATTGTGGAAATCAGAT+TGG - tig0021032:59126-59145 Msa1388010:intron 30.0%
!!! TTTATTTTTGTCCTACTTGC+AGG - tig0021032:59239-59258 Msa1388010:intron 30.0%
CGTAGGTTATCCATTTATAA+AGG - tig0021032:59279-59298 Msa1388010:intron 30.0%
TATTAAATTATCGCGGAGAA+AGG + tig0021032:59417-59436 None:intergenic 30.0%
TTTCTCCGCGATAATTTAAT+AGG - tig0021032:59416-59435 Msa1388010:intron 30.0%
TTCTCCGCGATAATTTAATA+GGG - tig0021032:59417-59436 Msa1388010:intron 30.0%
! ATCTAATTGCTGTTGTGATT+AGG - tig0021032:59503-59522 Msa1388010:intron 30.0%
! AAGGATATTTTCAGCTGTAT+TGG + tig0021032:59821-59840 None:intergenic 30.0%
TGTTGTAACATGTCTGTTAA+TGG - tig0021032:60005-60024 Msa1388010:intron 30.0%
AAAGAACTGCATACGTTTAT+TGG + tig0021032:60031-60050 None:intergenic 30.0%
ATTCAAGCAAATTAGCCAAA+TGG - tig0021032:60134-60153 Msa1388010:CDS 30.0%
ACGTAATAATGTGATCCATT+TGG + tig0021032:60152-60171 None:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG + tig0021032:60199-60218 None:intergenic 30.0%
TTCTCCACTTTCAAATGATA+AGG - tig0021032:60374-60393 Msa1388010:CDS 30.0%
GTAATGTATTCATTAGTGCT+TGG + tig0021032:60621-60640 None:intergenic 30.0%
! TTTGTTGGAGGACATTGATT+AGG + tig0021032:57749-57768 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG - tig0021032:57814-57833 Msa1388010:CDS 35.0%
AAACTAGGTTTAGCAATGAG+AGG + tig0021032:57875-57894 None:intergenic 35.0%
TCAGCTCTCACAATAAAACT+AGG + tig0021032:57890-57909 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG + tig0021032:57921-57940 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG - tig0021032:57937-57956 Msa1388010:intron 35.0%
GGATAATGCTGATGAAGTTT+CGG - tig0021032:57958-57977 Msa1388010:intron 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG - tig0021032:58051-58070 Msa1388010:intron 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG - tig0021032:58052-58071 Msa1388010:intron 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG - tig0021032:58053-58072 Msa1388010:intron 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + tig0021032:58466-58485 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG + tig0021032:58484-58503 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG + tig0021032:58513-58532 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG + tig0021032:58542-58561 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG + tig0021032:58543-58562 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+TGG + tig0021032:58589-58608 None:intergenic 35.0%
!! CCAAAAGTGTCAAAAGCAAA+TGG - tig0021032:58586-58605 Msa1388010:CDS 35.0%
TTATAAGGTCTGGATGCATT+TGG + tig0021032:58734-58753 None:intergenic 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG + tig0021032:58749-58768 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG - tig0021032:58810-58829 Msa1388010:CDS 35.0%
!! TCAATGAACTCTGAAATGCA+TGG - tig0021032:59024-59043 Msa1388010:CDS 35.0%
TTGTGCAGATATTGCATAAG+AGG - tig0021032:59053-59072 Msa1388010:CDS 35.0%
TGTGCAGATATTGCATAAGA+GGG - tig0021032:59054-59073 Msa1388010:CDS 35.0%
GTCATATCAAGACAAAATGC+TGG - tig0021032:59306-59325 Msa1388010:intron 35.0%
CATCCAAAAGAAACATTCAC+CGG + tig0021032:59462-59481 None:intergenic 35.0%
CACAACAGCAATTAGATACA+TGG + tig0021032:59500-59519 None:intergenic 35.0%
TGTTGTGATTAGGATAGAAG+AGG - tig0021032:59513-59532 Msa1388010:intron 35.0%
AAACTGGAAGATGGGAATTT+GGG - tig0021032:59539-59558 Msa1388010:intron 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG + tig0021032:59754-59773 None:intergenic 35.0%
! CAGCTGTATTGGTATATGAT+CGG + tig0021032:59810-59829 None:intergenic 35.0%
GAGTCCAATTTGTAAGATCA+AGG + tig0021032:59840-59859 None:intergenic 35.0%
GTTGGAAAGTCAAACAGAAA+GGG + tig0021032:59895-59914 None:intergenic 35.0%
TGTTGGAAAGTCAAACAGAA+AGG + tig0021032:59896-59915 None:intergenic 35.0%
! TGTTTGACTTTCCAACACTT+TGG - tig0021032:59899-59918 Msa1388010:intron 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG + tig0021032:59913-59932 None:intergenic 35.0%
AACAACAACTAGGACTGAAA+AGG + tig0021032:59930-59949 None:intergenic 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG - tig0021032:59959-59978 Msa1388010:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG + tig0021032:59968-59987 None:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG + tig0021032:60177-60196 None:intergenic 35.0%
! ACGCTTCATTTTATAAGGCA+AGG + tig0021032:60205-60224 None:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG + tig0021032:60371-60390 None:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG + tig0021032:60372-60391 None:intergenic 35.0%
GTGACCTTATCATTTGAAAG+TGG + tig0021032:60381-60400 None:intergenic 35.0%
TCAAAGTAATCTGCTGATCT+CGG - tig0021032:60425-60444 Msa1388010:intron 35.0%
TTATTCCGCATGCTTATTTC+TGG - tig0021032:60588-60607 Msa1388010:five_prime_UTR 35.0%
TTCTACCAGAAATAAGCATG+CGG + tig0021032:60596-60615 None:intergenic 35.0%
TGTGGAACGGATAGAAGAAA+CGG - tig0021032:57501-57520 Msa1388010:three_prime_UTR 40.0%
TTTCCTCTTCTTCCTCTCTA+CGG - tig0021032:57558-57577 Msa1388010:three_prime_UTR 40.0%
GAAATACTTGGGAAGCCATA+AGG + tig0021032:57591-57610 None:intergenic 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG + tig0021032:57764-57783 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG - tig0021032:57813-57832 Msa1388010:CDS 40.0%
CTTCTTCGACCTCAATTTCA+TGG - tig0021032:57837-57856 Msa1388010:CDS 40.0%
ATTACAGCGCCATGAAATTG+AGG + tig0021032:57849-57868 None:intergenic 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG + tig0021032:57915-57934 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG - tig0021032:57968-57987 Msa1388010:intron 40.0%
! AACTGAAGGAGAACAGGTTT+TGG - tig0021032:57982-58001 Msa1388010:intron 40.0%
TTAACACGAGTTTGTCTAGG+CGG + tig0021032:58037-58056 None:intergenic 40.0%
AGCTTAACACGAGTTTGTCT+AGG + tig0021032:58040-58059 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG - tig0021032:58040-58059 Msa1388010:intron 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG - tig0021032:58054-58073 Msa1388010:intron 40.0%
TGCCATCCAAAAAGGTTTAG+CGG + tig0021032:58458-58477 None:intergenic 40.0%
CCATGAATGTTGTGTTTACG+AGG + tig0021032:58489-58508 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG - tig0021032:58486-58505 Msa1388010:intron 40.0%
AACACAACATTCATGGACCT+AGG - tig0021032:58493-58512 Msa1388010:intron 40.0%
CATTGCTATGCATAACCCTT+TGG - tig0021032:58524-58543 Msa1388010:intron 40.0%
CCCTTTGGATTCTATGTAGA+AGG - tig0021032:58539-58558 Msa1388010:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG - tig0021032:58621-58640 Msa1388010:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG + tig0021032:58625-58644 None:intergenic 40.0%
GGTACCAATTCATCTCTGTA+AGG + tig0021032:58628-58647 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG - tig0021032:58818-58837 Msa1388010:CDS 40.0%
CAAATGAAATGGCCTAAAGG+TGG - tig0021032:58821-58840 Msa1388010:CDS 40.0%
GATAACCTACGTTTGTTCTC+CGG + tig0021032:59270-59289 None:intergenic 40.0%
! CTGTACCGGCAATAATTCTT+CGG + tig0021032:59353-59372 None:intergenic 40.0%
GAAGAATTATTGCCGGTACA+GGG - tig0021032:59352-59371 Msa1388010:intron 40.0%
AAGAATTATTGCCGGTACAG+GGG - tig0021032:59353-59372 Msa1388010:intron 40.0%
!! AGAGTGAGGGTACTTACATT+GGG + tig0021032:59392-59411 None:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG + tig0021032:59393-59412 None:intergenic 40.0%
! ATTAGTGCTGTCATTTGCAC+CGG - tig0021032:59440-59459 Msa1388010:intron 40.0%
AGGATAGAAGAGGTTCAAAC+TGG - tig0021032:59523-59542 Msa1388010:intron 40.0%
AAGAGGTTCAAACTGGAAGA+TGG - tig0021032:59530-59549 Msa1388010:intron 40.0%
AGAGGTTCAAACTGGAAGAT+GGG - tig0021032:59531-59550 Msa1388010:intron 40.0%
CAAACTGGAAGATGGGAATT+TGG - tig0021032:59538-59557 Msa1388010:intron 40.0%
! TGAAGTCCCTTTAGAGACAT+TGG - tig0021032:59604-59623 Msa1388010:intron 40.0%
GGTCATCCAATGTCTCTAAA+GGG + tig0021032:59613-59632 None:intergenic 40.0%
TGGTCATCCAATGTCTCTAA+AGG + tig0021032:59614-59633 None:intergenic 40.0%
TAACACAAAATGCAGCAGCT+TGG + tig0021032:59696-59715 None:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG + tig0021032:59745-59764 None:intergenic 40.0%
ATACTTGGGAAGCCATAAGG+AGG + tig0021032:57588-57607 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG - tig0021032:57594-57613 Msa1388010:three_prime_UTR 45.0%
CAATGTCCTCCAACAAAGCT+AGG - tig0021032:57752-57771 Msa1388010:CDS 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG + tig0021032:57761-57780 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG + tig0021032:57824-57843 None:intergenic 45.0%
CTAGGTTTAGCAATGAGAGG+AGG + tig0021032:57872-57891 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG + tig0021032:57950-57969 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG - tig0021032:57976-57995 Msa1388010:intron 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG - tig0021032:57997-58016 Msa1388010:intron 45.0%
TTTGGATTCTGCATCTGAGG+TGG - tig0021032:58000-58019 Msa1388010:intron 45.0%
! GCACTGACACTTCAGATCAA+AGG - tig0021032:58156-58175 Msa1388010:intron 45.0%
ACACAAACACGAACACCAGA+CGG + tig0021032:58238-58257 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG - tig0021032:58419-58438 Msa1388010:CDS 45.0%
!!! TTTTGGCTTCCTAGCATCAG+AGG + tig0021032:58572-58591 None:intergenic 45.0%
CCTTAATTGCAGCCACCTTT+AGG + tig0021032:58836-58855 None:intergenic 45.0%
CCTAAAGGTGGCTGCAATTA+AGG - tig0021032:58833-58852 Msa1388010:CDS 45.0%
TTGCAGCTTCAGATGAAGTG+AGG - tig0021032:59080-59099 Msa1388010:intron 45.0%
ATATCTCCAGTCCTTAGGTC+AGG + tig0021032:59112-59131 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG + tig0021032:59117-59136 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG - tig0021032:59114-59133 Msa1388010:intron 45.0%
AAGTTCCGGAGAACAAACGT+AGG - tig0021032:59262-59281 Msa1388010:intron 45.0%
CGAAGAATTATTGCCGGTAC+AGG - tig0021032:59351-59370 Msa1388010:intron 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG - tig0021032:59456-59475 Msa1388010:intron 45.0%
! ATACATGGTGATGCACAGCA+AGG + tig0021032:59485-59504 None:intergenic 45.0%
TGTCATGCCTATGCTAGTAC+TGG - tig0021032:59717-59736 Msa1388010:intron 45.0%
CATGGTACCAGTACTAGCAT+AGG + tig0021032:59727-59746 None:intergenic 45.0%
!! CTATGCTAGTACTGGTACCA+TGG - tig0021032:59725-59744 Msa1388010:intron 45.0%
ATTGGACTCACTCACTCCAT+TGG - tig0021032:59851-59870 Msa1388010:intron 45.0%
GCACGATTACAACTCTCCAA+TGG + tig0021032:59870-59889 None:intergenic 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG - tig0021032:60307-60326 Msa1388010:CDS 45.0%
AGACCGTAGAGAGGAAGAAG+AGG + tig0021032:57564-57583 None:intergenic 50.0%
TAAGGAGGAAGACCGTAGAG+AGG + tig0021032:57573-57592 None:intergenic 50.0%
CTCTACGGTCTTCCTCCTTA+TGG - tig0021032:57573-57592 Msa1388010:three_prime_UTR 50.0%
TAAGTTACGAGAAGCGAGGG+TGG + tig0021032:57801-57820 None:intergenic 50.0%
GGGTAAGTTACGAGAAGCGA+GGG + tig0021032:57804-57823 None:intergenic 50.0%
AGGGTAAGTTACGAGAAGCG+AGG + tig0021032:57805-57824 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG + tig0021032:57825-57844 None:intergenic 50.0%
AATTGAGGTCGAAGAAGCCC+TGG + tig0021032:57834-57853 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG - tig0021032:57901-57920 Msa1388010:intron 50.0%
CACATGAATAGGAGGCAAGC+GGG - tig0021032:58420-58439 Msa1388010:CDS 50.0%
! CGCCGCTAAACCTTTTTGGA+TGG - tig0021032:58453-58472 Msa1388010:intron 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG - tig0021032:58798-58817 Msa1388010:CDS 50.0%
GTCCTACTTGCAGGAAGTTC+CGG - tig0021032:59248-59267 Msa1388010:intron 50.0%
CGCGTCCGAAGAATTATTGC+CGG - tig0021032:59345-59364 Msa1388010:intron 50.0%
GACTATCTCAACCCCTGTAC+CGG + tig0021032:59367-59386 None:intergenic 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG - tig0021032:60312-60331 Msa1388010:CDS 50.0%
CTTCCTTCGCACGTGTGGAA+CGG - tig0021032:57488-57507 Msa1388010:three_prime_UTR 55.0%
TATCCGTTCCACACGTGCGA+AGG + tig0021032:57494-57513 None:intergenic 55.0%
! GGATTCTGCATCTGAGGTGG+AGG - tig0021032:58003-58022 Msa1388010:intron 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG + tig0021032:58032-58051 None:intergenic 55.0%
CGATAGTTGTCGTGTCCGTC+TGG - tig0021032:58220-58239 Msa1388010:intron 55.0%
! GCTGCGCCGCTAAACCTTTT+TGG - tig0021032:58449-58468 Msa1388010:CDS 55.0%
GGTCAACAGCCTCTGATGCT+AGG - tig0021032:58560-58579 Msa1388010:intron 55.0%
TGAGGACCACTCCTGACCTA+AGG - tig0021032:59098-59117 Msa1388010:intron 55.0%
ACCACTCCTGACCTAAGGAC+TGG - tig0021032:59103-59122 Msa1388010:intron 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG + tig0021032:59107-59126 None:intergenic 55.0%
CTCCGGAACTTCCTGCAAGT+AGG + tig0021032:59253-59272 None:intergenic 55.0%
GCGGAGAAAGGCAAGAGTGA+GGG + tig0021032:59405-59424 None:intergenic 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG - tig0021032:60316-60335 Msa1388010:CDS 55.0%
GTCTTGCCTGCCTGACCTTT+CGG + tig0021032:60325-60344 None:intergenic 55.0%
CGTTCCACACGTGCGAAGGA+AGG + tig0021032:57490-57509 None:intergenic 60.0%
ACGAGAAGCGAGGGTGGAAG+CGG + tig0021032:57795-57814 None:intergenic 60.0%
CGCGGAGAAAGGCAAGAGTG+AGG + tig0021032:59406-59425 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021032 gene 57487 60668 57487 ID=Msa1388010;Name=Msa1388010
tig0021032 mRNA 57487 60668 57487 ID=Msa1388010-mRNA-1;Parent=Msa1388010;Name=Msa1388010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=105|0.5|0.71|0.71|0.83|0.71|7|227|284
tig0021032 exon 57487 57872 57487 ID=Msa1388010-mRNA-1:exon:10979;Parent=Msa1388010-mRNA-1
tig0021032 exon 58417 58469 58417 ID=Msa1388010-mRNA-1:exon:10978;Parent=Msa1388010-mRNA-1
tig0021032 exon 58575 58630 58575 ID=Msa1388010-mRNA-1:exon:10977;Parent=Msa1388010-mRNA-1
tig0021032 exon 58761 58894 58761 ID=Msa1388010-mRNA-1:exon:10976;Parent=Msa1388010-mRNA-1
tig0021032 exon 59008 59094 59008 ID=Msa1388010-mRNA-1:exon:10975;Parent=Msa1388010-mRNA-1
tig0021032 exon 60080 60421 60080 ID=Msa1388010-mRNA-1:exon:10974;Parent=Msa1388010-mRNA-1
tig0021032 exon 60540 60668 60540 ID=Msa1388010-mRNA-1:exon:10973;Parent=Msa1388010-mRNA-1
tig0021032 five_prime_UTR 60564 60668 60564 ID=Msa1388010-mRNA-1:five_prime_utr;Parent=Msa1388010-mRNA-1
tig0021032 CDS 60540 60563 60540 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 60080 60421 60080 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 59008 59094 59008 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 58761 58894 58761 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 58575 58630 58575 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 58417 58469 58417 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 CDS 57714 57872 57714 ID=Msa1388010-mRNA-1:cds;Parent=Msa1388010-mRNA-1
tig0021032 three_prime_UTR 57487 57713 57487 ID=Msa1388010-mRNA-1:three_prime_utr;Parent=Msa1388010-mRNA-1
Gene Sequence

>Msa1388010

ATGGCTTCCCAAGTATTTCTTCAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCCTCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGTACAGGGGTTGAGATAGTCTTCCCAATGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAATTACTTCCAAGCTGCTGCATTTTGTGTTATTGTCATGCCTATGCTAGTACTGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATAAGGTCACACGCTGTTCATCATGTTCTTATTCTCAAAGTAATCTGCTGA

Protein sequence

>Msa1388010

MASQVFLQTLFAPNQCPPTKLGFSSACSASTLASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPMIEEVQTGRWEFGTSSSFNNYFQAAAFCVIVMPMLVLLLTKHQRNQSGKAPKGQAGKTVLSKRQASQILHFQMIRSHAVHHVLILKVIC*