Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693960 | XP_003607957.1 | 90.987 | 466 | 27 | 2 | 1 | 466 | 1 | 451 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693960 | sp|Q8VY09|DJ1C_ARATH | 57.045 | 440 | 164 | 5 | 29 | 466 | 56 | 472 | 5.41e-173 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693960 | G7JL67 | 90.987 | 466 | 27 | 2 | 1 | 466 | 1 | 451 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037780 | Msa0693960 | 0.818573 | 1.827041e-52 | -8.615850e-47 |
| Msa0069150 | Msa0693960 | 0.802670 | 5.026062e-49 | -8.615850e-47 |
| Msa0081440 | Msa0693960 | 0.805517 | 1.284809e-49 | -8.615850e-47 |
| Msa0628440 | Msa0693960 | 0.814903 | 1.215622e-51 | -8.615850e-47 |
| Msa0646410 | Msa0693960 | 0.817743 | 2.815157e-52 | -8.615850e-47 |
| Msa0693050 | Msa0693960 | 0.815172 | 1.059204e-51 | -8.615850e-47 |
| Msa0693960 | Msa0707170 | 0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0693960 | Msa0754880 | 0.829428 | 5.176545e-55 | -8.615850e-47 |
| Msa0693960 | Msa1080610 | 0.803856 | 2.854986e-49 | -8.615850e-47 |
| Msa0693960 | Msa1080680 | 0.805449 | 1.327703e-49 | -8.615850e-47 |
| Msa0693960 | Msa1167150 | 0.802673 | 5.017048e-49 | -8.615850e-47 |
| Msa0693960 | Msa1190510 | 0.808238 | 3.417297e-50 | -8.615850e-47 |
| Msa0693960 | Msa1229670 | 0.802065 | 6.694899e-49 | -8.615850e-47 |
| Msa0693960 | Msa1367560 | 0.846271 | 2.412475e-59 | -8.615850e-47 |
| Msa0693960 | Msa1375970 | 0.801443 | 8.983441e-49 | -8.615850e-47 |
| Msa0693960 | Msa1376680 | 0.827830 | 1.259793e-54 | -8.615850e-47 |
| Msa0693960 | Msa1400830 | 0.806394 | 8.404422e-50 | -8.615850e-47 |
| Msa0693960 | Msa1411930 | 0.824525 | 7.700264e-54 | -8.615850e-47 |
| Msa0693960 | Msa1440990 | 0.827084 | 1.901658e-54 | -8.615850e-47 |
| Msa0173700 | Msa0693960 | 0.803719 | 3.048677e-49 | -8.615850e-47 |
| Msa0371010 | Msa0693960 | 0.800965 | 1.124881e-48 | -8.615850e-47 |
| Msa0372570 | Msa0693960 | 0.854564 | 1.131614e-61 | -8.615850e-47 |
| Msa0373120 | Msa0693960 | 0.802156 | 6.413485e-49 | -8.615850e-47 |
| Msa0380270 | Msa0693960 | 0.847052 | 1.476153e-59 | -8.615850e-47 |
| Msa0415160 | Msa0693960 | 0.806474 | 8.081846e-50 | -8.615850e-47 |
| Msa0419150 | Msa0693960 | 0.822027 | 2.949817e-53 | -8.615850e-47 |
| Msa0420300 | Msa0693960 | 0.811291 | 7.536509e-51 | -8.615850e-47 |
| Msa0431550 | Msa0693960 | 0.811432 | 7.023406e-51 | -8.615850e-47 |
| Msa0460170 | Msa0693960 | 0.812885 | 3.384691e-51 | -8.615850e-47 |
| Msa0464980 | Msa0693960 | 0.821634 | 3.636944e-53 | -8.615850e-47 |
| Msa0476560 | Msa0693960 | 0.817947 | 2.531841e-52 | -8.615850e-47 |
| Msa0329360 | Msa0693960 | 0.803855 | 2.856706e-49 | -8.615850e-47 |
| Msa0500610 | Msa0693960 | 0.825245 | 5.206362e-54 | -8.615850e-47 |
| Msa0500700 | Msa0693960 | 0.820161 | 7.939380e-53 | -8.615850e-47 |
| Msa0512950 | Msa0693960 | 0.866004 | 3.914002e-65 | -8.615850e-47 |
| Msa0520550 | Msa0693960 | 0.807183 | 5.723245e-50 | -8.615850e-47 |
| Msa0524470 | Msa0693960 | 0.845593 | 3.686545e-59 | -8.615850e-47 |
| Msa0531270 | Msa0693960 | 0.812879 | 3.395460e-51 | -8.615850e-47 |
| Msa0572880 | Msa0693960 | 0.808518 | 2.977003e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693960 | MtrunA17_Chr4g0044761 | 90.987 | 466 | 27 | 2 | 1 | 466 | 1 | 451 | 0.0 | 805 |
| Msa0693960 | MtrunA17_Chr2g0316281 | 47.030 | 404 | 196 | 6 | 64 | 464 | 52 | 440 | 3.30e-103 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693960 | AT4G34020.1 | 57.045 | 440 | 164 | 5 | 29 | 466 | 56 | 472 | 5.50e-174 | 497 |
| Msa0693960 | AT4G34020.2 | 57.527 | 372 | 142 | 3 | 96 | 466 | 81 | 437 | 2.17e-152 | 441 |
| Msa0693960 | AT4G34020.2 | 35.751 | 193 | 110 | 4 | 65 | 257 | 253 | 431 | 4.46e-26 | 110 |
| Msa0693960 | AT4G34020.3 | 58.258 | 333 | 123 | 3 | 135 | 466 | 1 | 318 | 1.68e-135 | 393 |
| Msa0693960 | AT4G34020.3 | 35.751 | 193 | 110 | 4 | 65 | 257 | 134 | 312 | 1.01e-26 | 110 |
| Msa0693960 | AT4G34020.4 | 58.258 | 333 | 123 | 3 | 135 | 466 | 1 | 318 | 1.68e-135 | 393 |
| Msa0693960 | AT4G34020.4 | 35.751 | 193 | 110 | 4 | 65 | 257 | 134 | 312 | 1.01e-26 | 110 |
| Msa0693960 | AT1G53280.1 | 44.961 | 387 | 197 | 5 | 64 | 448 | 53 | 425 | 1.14e-101 | 311 |
| Msa0693960 | AT1G53280.1 | 42.211 | 199 | 112 | 3 | 265 | 461 | 37 | 234 | 1.06e-40 | 151 |
| Msa0693960 | AT3G14990.1 | 45.780 | 391 | 197 | 5 | 64 | 452 | 6 | 383 | 3.84e-97 | 298 |
| Msa0693960 | AT3G14990.1 | 43.407 | 182 | 100 | 2 | 283 | 461 | 7 | 188 | 3.92e-40 | 149 |
| Msa0693960 | AT3G14990.1 | 36.598 | 194 | 109 | 2 | 65 | 258 | 213 | 392 | 1.37e-24 | 105 |
| Msa0693960 | AT3G14990.3 | 45.040 | 373 | 190 | 5 | 82 | 452 | 1 | 360 | 9.52e-90 | 278 |
| Msa0693960 | AT3G14990.3 | 41.212 | 165 | 94 | 2 | 300 | 461 | 1 | 165 | 3.67e-32 | 126 |
| Msa0693960 | AT3G14990.3 | 36.598 | 194 | 109 | 2 | 65 | 258 | 190 | 369 | 1.06e-24 | 105 |
| Msa0693960 | AT3G14990.2 | 45.040 | 373 | 190 | 5 | 82 | 452 | 1 | 360 | 9.52e-90 | 278 |
| Msa0693960 | AT3G14990.2 | 41.212 | 165 | 94 | 2 | 300 | 461 | 1 | 165 | 3.67e-32 | 126 |
| Msa0693960 | AT3G14990.2 | 36.598 | 194 | 109 | 2 | 65 | 258 | 190 | 369 | 1.06e-24 | 105 |
| Msa0693960 | AT1G53280.2 | 44.776 | 335 | 169 | 5 | 64 | 396 | 53 | 373 | 1.16e-86 | 270 |
| Msa0693960 | AT1G53280.2 | 42.211 | 199 | 112 | 3 | 265 | 461 | 37 | 234 | 3.44e-41 | 151 |
Find 151 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAGGAAAATAGGTTATT+TGG | 0.191615 | 4_4:+63215724 | Msa0693960:CDS |
| TCCACAAGCTTCCAACGTTT+TGG | 0.207481 | 4_4:+63216042 | Msa0693960:intron |
| TAATCAAAACAATGCGTTAA+AGG | 0.217122 | 4_4:-63218619 | None:intergenic |
| TAATTTATCAGCAACAATTT+TGG | 0.218461 | 4_4:-63217413 | None:intergenic |
| CCATACATCCAGTTGTTAAA+AGG | 0.238208 | 4_4:+63218835 | Msa0693960:three_prime_UTR |
| CCTTGGCTGAGCAGCTGTTT+GGG | 0.241099 | 4_4:+63216144 | Msa0693960:CDS |
| CGCAATTCCGGTTAGGATAA+TGG | 0.246932 | 4_4:-63215222 | None:intergenic |
| AAAGGGTGGATAAGGGTTTA+AGG | 0.250134 | 4_4:-63215348 | None:intergenic |
| GGTGCATTTGTGGGTGGTGG+TGG | 0.264016 | 4_4:-63215421 | None:intergenic |
| GCTATTGTGAGCAAGTTATT+TGG | 0.265797 | 4_4:+63218429 | Msa0693960:CDS |
| GGCTGTTAAGTCCAACATTC+AGG | 0.274367 | 4_4:+63216064 | Msa0693960:CDS |
| GCATTTGTGGGTGGTGGTGG+TGG | 0.281616 | 4_4:-63215418 | None:intergenic |
| ATGGGAAGAAGGACTTTCTT+TGG | 0.285513 | 4_4:-63215448 | None:intergenic |
| GTAAACAAGCTGAGGAAAAT+AGG | 0.293312 | 4_4:+63215716 | Msa0693960:CDS |
| GTCCTTCTTCCCATCGGTTT+CGG | 0.296223 | 4_4:+63215457 | Msa0693960:CDS |
| ACCTTGGCTGAGCAGCTGTT+TGG | 0.305489 | 4_4:+63216143 | Msa0693960:CDS |
| AAGGGAGGTTGCTGAATTCT+TGG | 0.306017 | 4_4:+63216178 | Msa0693960:CDS |
| TTGGATGTAATTTCCATATT+CGG | 0.319290 | 4_4:+63218770 | Msa0693960:three_prime_UTR |
| TGGAGGTGAAAGGGTGGATA+AGG | 0.339247 | 4_4:-63215356 | None:intergenic |
| AATCAAAACAATGCGTTAAA+GGG | 0.339451 | 4_4:-63218618 | None:intergenic |
| GAAATGGAGAGGGTGGAGTT+TGG | 0.339859 | 4_4:-63215388 | None:intergenic |
| CTGTTACCACAGCGCAATTC+CGG | 0.342867 | 4_4:-63215234 | None:intergenic |
| TTACATGTTTGCTTTAACCT+TGG | 0.343551 | 4_4:+63216127 | Msa0693960:CDS |
| CAAACAATATAGCGAGTGTT+TGG | 0.346889 | 4_4:-63215944 | None:intergenic |
| AGGTCTGATAGAAAATTTAT+AGG | 0.359358 | 4_4:+63218541 | Msa0693960:three_prime_UTR |
| CGGTTTCGGCACCGAGGAAA+TGG | 0.360850 | 4_4:+63215471 | Msa0693960:CDS |
| AATTCAGCTGGAAGAATATA+CGG | 0.369869 | 4_4:+63218143 | Msa0693960:CDS |
| TTTAAGATTGTCTATGGAAG+AGG | 0.370464 | 4_4:-63218319 | None:intergenic |
| TGGTGGTGGAGAGGTGGAAA+TGG | 0.376467 | 4_4:-63215404 | None:intergenic |
| ATGTGGTTTCAAGTACTTGT+AGG | 0.387340 | 4_4:+63218521 | Msa0693960:three_prime_UTR |
| AAAACAAATCAGGCTTGGGC+TGG | 0.402388 | 4_4:-63218573 | None:intergenic |
| AGGAGTTCAATGAAATTGAT+TGG | 0.403621 | 4_4:+63217143 | Msa0693960:CDS |
| GCTTTACCTGGAGGAATGCC+TGG | 0.415338 | 4_4:+63215649 | Msa0693960:CDS |
| CAGCTTCAAGTTGTAGCTGC+TGG | 0.418300 | 4_4:+63215562 | Msa0693960:CDS |
| TAACACTGATAGATATTCTA+AGG | 0.418873 | 4_4:+63217323 | Msa0693960:CDS |
| ACACCACCTGAAAACAAATC+AGG | 0.421102 | 4_4:-63218583 | None:intergenic |
| TCTTCAGAACCATGCGCGAT+TGG | 0.430665 | 4_4:-63217289 | None:intergenic |
| GCTTCTGTTGAGAAAACTCT+TGG | 0.435054 | 4_4:+63217370 | Msa0693960:CDS |
| ACCTGAAAACAAATCAGGCT+TGG | 0.437458 | 4_4:-63218578 | None:intergenic |
| TCCGTCTTTAAGATTGTCTA+TGG | 0.438223 | 4_4:-63218325 | None:intergenic |
| GCAAACATGTAAGCAGTTCC+CGG | 0.440613 | 4_4:-63216116 | None:intergenic |
| GTGAGCAAGTTATTTGGTAA+TGG | 0.442489 | 4_4:+63218435 | Msa0693960:CDS |
| CTTCAGAACCATGCGCGATT+GGG | 0.443538 | 4_4:-63217288 | None:intergenic |
| ACATGATTTGATTATTCTCC+CGG | 0.445948 | 4_4:+63217459 | Msa0693960:CDS |
| GGGTGGTGGTGGTGGAGAGG+TGG | 0.448522 | 4_4:-63215410 | None:intergenic |
| TCCAACATTCAGGTTTCAAA+CGG | 0.449865 | 4_4:+63216074 | Msa0693960:CDS |
| GCTTACAACAAGCCGTGGCC+CGG | 0.454304 | 4_4:+63216097 | Msa0693960:CDS |
| CATACATCCAGTTGTTAAAA+GGG | 0.455861 | 4_4:+63218836 | Msa0693960:three_prime_UTR |
| AAGAAAACCATTATCCTAAC+CGG | 0.458652 | 4_4:+63215215 | Msa0693960:five_prime_UTR |
| TTTAAGGGTGAGAGTGGATG+TGG | 0.458962 | 4_4:-63215332 | None:intergenic |
| CTCAAAGAACAAAATTCAGC+TGG | 0.460880 | 4_4:+63218131 | Msa0693960:CDS |
| AAACAAATCAGGCTTGGGCT+GGG | 0.463419 | 4_4:-63218572 | None:intergenic |
| ATCCACGTCCTCCGTCGTGC+TGG | 0.464137 | 4_4:+63215508 | Msa0693960:CDS |
| GTGGAGTTTGGAGTGGAGCG+TGG | 0.464947 | 4_4:-63215376 | None:intergenic |
| CACCAGCACGACGGAGGACG+TGG | 0.465570 | 4_4:-63215510 | None:intergenic |
| CCTTGTTTGTGTAGAATAGC+AGG | 0.466355 | 4_4:-63218182 | None:intergenic |
| TTTGATCTTATTGCTTTACC+TGG | 0.471486 | 4_4:+63215637 | Msa0693960:CDS |
| AAATTTCAGGGAGGAACTGC+TGG | 0.472046 | 4_4:+63218068 | Msa0693960:intron |
| CACTGTAACGGAGTTTGCAT+TGG | 0.475926 | 4_4:+63218407 | Msa0693960:CDS |
| CTTGGCTGAGCAGCTGTTTG+GGG | 0.476503 | 4_4:+63216145 | Msa0693960:CDS |
| GAGTGGAGCGTGGAGGTGAA+AGG | 0.477114 | 4_4:-63215366 | None:intergenic |
| CGGCAGAGTTGAAAATATGC+TGG | 0.477810 | 4_4:+63218790 | Msa0693960:three_prime_UTR |
| AAGGGTGGATAAGGGTTTAA+GGG | 0.480551 | 4_4:-63215347 | None:intergenic |
| AATGAAATTGATTGGTCTGT+TGG | 0.480796 | 4_4:+63217151 | Msa0693960:CDS |
| CCAACATTCAGGTTTCAAAC+GGG | 0.482053 | 4_4:+63216075 | Msa0693960:CDS |
| TGTGGGTGGTGGTGGTGGAG+AGG | 0.482543 | 4_4:-63215413 | None:intergenic |
| CAAGGCAAAAGAGTAACAGC+AGG | 0.482628 | 4_4:-63215763 | None:intergenic |
| ATCAAAACAATGCGTTAAAG+GGG | 0.484761 | 4_4:-63218617 | None:intergenic |
| GATTCAGAGGACATGGTGAT+TGG | 0.485961 | 4_4:-63218653 | None:intergenic |
| GGAGGTGAAAGGGTGGATAA+GGG | 0.486111 | 4_4:-63215355 | None:intergenic |
| CCTGAAAACAAATCAGGCTT+GGG | 0.487349 | 4_4:-63218577 | None:intergenic |
| GATAACTGCTTCCATTTCCT+CGG | 0.488668 | 4_4:-63215482 | None:intergenic |
| GTGGATGTGGAGATGGTGAA+TGG | 0.497801 | 4_4:-63215319 | None:intergenic |
| GATGCCGTAGTAGTTATTGA+TGG | 0.498779 | 4_4:+63218357 | Msa0693960:CDS |
| TGTAAGCAGTTCCCGGGCCA+CGG | 0.500404 | 4_4:-63216109 | None:intergenic |
| AGTGGAGCGTGGAGGTGAAA+GGG | 0.500650 | 4_4:-63215365 | None:intergenic |
| TGGGGAGTCTGTTGCAAGGG+AGG | 0.503381 | 4_4:+63216163 | Msa0693960:CDS |
| ACCACAGCGCAATTCCGGTT+AGG | 0.507296 | 4_4:-63215229 | None:intergenic |
| ACACAAACAAGGTTTACTAA+AGG | 0.507836 | 4_4:+63218193 | Msa0693960:CDS |
| TGCCGAAACCGATGGGAAGA+AGG | 0.513668 | 4_4:-63215459 | None:intergenic |
| CCCGTTTGAAACCTGAATGT+TGG | 0.515692 | 4_4:-63216075 | None:intergenic |
| TCCTCGGTGCCGAAACCGAT+GGG | 0.516608 | 4_4:-63215466 | None:intergenic |
| GCTCTAGTAGTCTATTTCCT+AGG | 0.517668 | 4_4:-63218498 | None:intergenic |
| TGAGAAAACTCTTGGAGTCA+TGG | 0.518249 | 4_4:+63217378 | Msa0693960:CDS |
| GTTTCAGCTTAGTTGAACAT+TGG | 0.518754 | 4_4:+63218751 | Msa0693960:three_prime_UTR |
| TCTCTCAATCTTGCTGAACC+AGG | 0.519163 | 4_4:-63215667 | None:intergenic |
| AGAGGTGGAAATGGAGAGGG+TGG | 0.521499 | 4_4:-63215395 | None:intergenic |
| AACAAATCAGGCTTGGGCTG+GGG | 0.522982 | 4_4:-63218571 | None:intergenic |
| AAGAAGGACTTTCTTTGGAG+GGG | 0.524408 | 4_4:-63215443 | None:intergenic |
| TAAGGGTTTAAGGGTGAGAG+TGG | 0.525563 | 4_4:-63215338 | None:intergenic |
| AATAGCAGGTGAGGAGCAGA+CGG | 0.534057 | 4_4:-63218168 | None:intergenic |
| CTTACAACAAGCCGTGGCCC+GGG | 0.537057 | 4_4:+63216098 | Msa0693960:CDS |
| GTTTGGGGAGTCTGTTGCAA+GGG | 0.539143 | 4_4:+63216160 | Msa0693960:CDS |
| CTGAGGCTCAACGGAAGCTA+CGG | 0.539984 | 4_4:-63215542 | None:intergenic |
| GGTGAGAGTGGATGTGGAGA+TGG | 0.540830 | 4_4:-63215326 | None:intergenic |
| GCTGAACCAGGCATTCCTCC+AGG | 0.543196 | 4_4:-63215655 | None:intergenic |
| GACTTAACAGCCCAAAACGT+TGG | 0.549971 | 4_4:-63216053 | None:intergenic |
| AGAAGGACTTTCTTTGGAGG+GGG | 0.554848 | 4_4:-63215442 | None:intergenic |
| GGAGAGGGTGGAGTTTGGAG+TGG | 0.556260 | 4_4:-63215383 | None:intergenic |
| AGTCTTGTTGTGGCGGTGGA+AGG | 0.558922 | 4_4:-63215292 | None:intergenic |
| CCCAAACAGCTGCTCAGCCA+AGG | 0.560232 | 4_4:-63216144 | None:intergenic |
| GAGGAACTGCTGGCGCTCAA+AGG | 0.560324 | 4_4:+63218078 | Msa0693960:CDS |
| TTCCTCGGTGCCGAAACCGA+TGG | 0.562069 | 4_4:-63215467 | None:intergenic |
| CTTGGAGTCATGGCTTCTCA+AGG | 0.562855 | 4_4:+63217388 | Msa0693960:CDS |
| AAGAAAGTCCTTCTTCCCAT+CGG | 0.565062 | 4_4:+63215451 | Msa0693960:CDS |
| TGATGATAATGTATCTAAGA+AGG | 0.567147 | 4_4:+63217123 | Msa0693960:CDS |
| TGTTTGGGGAGTCTGTTGCA+AGG | 0.568984 | 4_4:+63216159 | Msa0693960:CDS |
| AGAGAGTCTTGTTGTGGCGG+TGG | 0.569839 | 4_4:-63215296 | None:intergenic |
| AACTTGAAGCTGAGGCTCAA+CGG | 0.571880 | 4_4:-63215551 | None:intergenic |
| AAGGTTGAGGCAGAAGAAGT+AGG | 0.575689 | 4_4:-63215273 | None:intergenic |
| TTTCTCTTCAAAAGACCCCA+AGG | 0.575881 | 4_4:-63215781 | None:intergenic |
| TTAAGATTGTCTATGGAAGA+GGG | 0.579235 | 4_4:-63218318 | None:intergenic |
| CCTGCTATTCTACACAAACA+AGG | 0.583795 | 4_4:+63218182 | Msa0693960:CDS |
| TTTGCCATCAATAACTACTA+CGG | 0.585134 | 4_4:-63218361 | None:intergenic |
| GGCAGAGTTGAAAATATGCT+GGG | 0.586317 | 4_4:+63218791 | Msa0693960:three_prime_UTR |
| GGAAGAAGGACTTTCTTTGG+AGG | 0.590110 | 4_4:-63215445 | None:intergenic |
| TCCATAGACAATCTTAAAGA+CGG | 0.593832 | 4_4:+63218324 | Msa0693960:CDS |
| TGAGGGACTTGCCACTGTAA+CGG | 0.595366 | 4_4:+63218395 | Msa0693960:CDS |
| CAAACATGTAAGCAGTTCCC+GGG | 0.595831 | 4_4:-63216115 | None:intergenic |
| GTTCTCATCCCAATCGCGCA+TGG | 0.596389 | 4_4:+63217280 | Msa0693960:CDS |
| GATCTTATTGCTTTACCTGG+AGG | 0.601166 | 4_4:+63215640 | Msa0693960:CDS |
| AAAATGAGATTCAGAGGACA+TGG | 0.603668 | 4_4:-63218660 | None:intergenic |
| CTTCAAGTTGTAGCTGCTGG+AGG | 0.607280 | 4_4:+63215565 | Msa0693960:CDS |
| TGGAGAGGTGGAAATGGAGA+GGG | 0.610101 | 4_4:-63215398 | None:intergenic |
| AAGAAGTAGGAGCAACGACA+TGG | 0.611487 | 4_4:-63215260 | None:intergenic |
| GTTGTGGCGGTGGAAGGTTG+AGG | 0.612790 | 4_4:-63215286 | None:intergenic |
| GTGGAGAGGTGGAAATGGAG+AGG | 0.615310 | 4_4:-63215399 | None:intergenic |
| GGAGCGTGGAGGTGAAAGGG+TGG | 0.616000 | 4_4:-63215362 | None:intergenic |
| AGAGCAAGAAGTGTAGCAGA+AGG | 0.616554 | 4_4:+63218459 | Msa0693960:CDS |
| GCAGCTACAACTTGAAGCTG+AGG | 0.621580 | 4_4:-63215559 | None:intergenic |
| GAAGAAGGACTTTCTTTGGA+GGG | 0.623385 | 4_4:-63215444 | None:intergenic |
| AATCACATGTAAACAAGCTG+AGG | 0.624888 | 4_4:+63215708 | Msa0693960:CDS |
| AACGGGCTTACAACAAGCCG+TGG | 0.632694 | 4_4:+63216092 | Msa0693960:CDS |
| AAATAGACTACTAGAGCATG+TGG | 0.634408 | 4_4:+63218504 | Msa0693960:exon |
| GGCAAAGTGATCACTTGTGA+GGG | 0.639904 | 4_4:+63218378 | Msa0693960:CDS |
| GAGTTTGGAGTGGAGCGTGG+AGG | 0.641201 | 4_4:-63215373 | None:intergenic |
| TTTGTGTAGAATAGCAGGTG+AGG | 0.652165 | 4_4:-63218177 | None:intergenic |
| GAATGGAGAGAGTCTTGTTG+TGG | 0.655286 | 4_4:-63215302 | None:intergenic |
| TGGAGAGAGTCTTGTTGTGG+CGG | 0.659112 | 4_4:-63215299 | None:intergenic |
| CAATGCAAACTCCGTTACAG+TGG | 0.660685 | 4_4:-63218406 | None:intergenic |
| TCAAAACAATGCGTTAAAGG+GGG | 0.663559 | 4_4:-63218616 | None:intergenic |
| AAGACAGTAACCTACACTGG+GGG | 0.666507 | 4_4:-63217182 | None:intergenic |
| TCCTAACCGGAATTGCGCTG+TGG | 0.673964 | 4_4:+63215228 | Msa0693960:five_prime_UTR |
| GCTCGGAAGTAAACTTGCGG+TGG | 0.677171 | 4_4:+63215889 | Msa0693960:intron |
| TCCCATCGGTTTCGGCACCG+AGG | 0.680821 | 4_4:+63215465 | Msa0693960:CDS |
| GAAGCTCGGAAGTAAACTTG+CGG | 0.687358 | 4_4:+63215886 | Msa0693960:intron |
| CATGAGCACCAGCACGACGG+AGG | 0.694711 | 4_4:-63215516 | None:intergenic |
| TGGCAAAGTGATCACTTGTG+AGG | 0.698032 | 4_4:+63218377 | Msa0693960:CDS |
| AGACAGTAACCTACACTGGG+GGG | 0.717258 | 4_4:-63217181 | None:intergenic |
| TAAGTTTGTCAGAATCACAG+TGG | 0.725371 | 4_4:-63215913 | None:intergenic |
| TGACATGAGCACCAGCACGA+CGG | 0.727381 | 4_4:-63215519 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTGTTTATTATTT+TGG | + | chr4_4:63215957-63215976 | Msa0693960:intron | 10.0% |
| !!! | CTCTATATTATTTATTTTTA+AGG | - | chr4_4:63217783-63217802 | None:intergenic | 10.0% |
| !!! | TTGTTTATTATTTTGGTATT+TGG | + | chr4_4:63215964-63215983 | Msa0693960:intron | 15.0% |
| !! | ATTTCAAAAAACAATGAAAA+CGG | + | chr4_4:63216662-63216681 | Msa0693960:intron | 15.0% |
| !! | TAAATAATATAGAGCATATA+TGG | + | chr4_4:63217789-63217808 | Msa0693960:intron | 15.0% |
| !! | ACCTATAAACTTATATTTAT+GGG | + | chr4_4:63217958-63217977 | Msa0693960:intron | 15.0% |
| !! | AAACGTTATTAAAAGTAAAC+AGG | - | chr4_4:63216535-63216554 | None:intergenic | 20.0% |
| !!! | ATCTGTTCATTTTAAATTAG+TGG | + | chr4_4:63216568-63216587 | Msa0693960:intron | 20.0% |
| !! | ATCTTCAATGTTCAAAATTT+AGG | + | chr4_4:63216811-63216830 | Msa0693960:intron | 20.0% |
| !! | CATTTCAACTAATAAACATA+TGG | - | chr4_4:63216902-63216921 | None:intergenic | 20.0% |
| !!! | TAATTTATCAGCAACAATTT+TGG | - | chr4_4:63217416-63217435 | None:intergenic | 20.0% |
| !!! | TTTTCATGAATTCATATTAC+CGG | - | chr4_4:63217481-63217500 | None:intergenic | 20.0% |
| !! | CACCTATAAACTTATATTTA+TGG | + | chr4_4:63217957-63217976 | Msa0693960:intron | 20.0% |
| !! | CCTATAAACTTATATTTATG+GGG | + | chr4_4:63217959-63217978 | Msa0693960:intron | 20.0% |
| !!! | ATTATTTTGGTATTTGGATG+AGG | + | chr4_4:63215970-63215989 | Msa0693960:intron | 25.0% |
| !! | TTTTATGCATTTTTGCGATT+AGG | + | chr4_4:63216224-63216243 | Msa0693960:intron | 25.0% |
| !! | TTTATGCATTTTTGCGATTA+GGG | + | chr4_4:63216225-63216244 | Msa0693960:intron | 25.0% |
| ! | TAGGGAAGAAATGAATATTT+AGG | + | chr4_4:63216243-63216262 | Msa0693960:intron | 25.0% |
| ! | TGTATTGCTAAATATTCATG+TGG | + | chr4_4:63216312-63216331 | Msa0693960:intron | 25.0% |
| !! | AATTTTGCTTGGAATCTAAA+AGG | + | chr4_4:63216509-63216528 | Msa0693960:intron | 25.0% |
| !! | TTCATTTTAAATTAGTGGCA+AGG | + | chr4_4:63216573-63216592 | Msa0693960:intron | 25.0% |
| !! | TTGACATTTTCACTGTTAAA+TGG | + | chr4_4:63216689-63216708 | Msa0693960:intron | 25.0% |
| !! | TGACATTTTCACTGTTAAAT+GGG | + | chr4_4:63216690-63216709 | Msa0693960:intron | 25.0% |
| ! | TTTGAACATTGAAGATGTAT+TGG | - | chr4_4:63216807-63216826 | None:intergenic | 25.0% |
| !! | GTTAGATCTATTTTCAGAAA+CGG | + | chr4_4:63216839-63216858 | Msa0693960:intron | 25.0% |
| ! | GTTGAAATGAAAATGAAAAC+AGG | + | chr4_4:63216913-63216932 | Msa0693960:intron | 25.0% |
| ! | GAAAATGAAAACAGGAAATA+TGG | + | chr4_4:63216921-63216940 | Msa0693960:intron | 25.0% |
| ! | ATCCAGATTTCAAAATTTCA+GGG | - | chr4_4:63216959-63216978 | None:intergenic | 25.0% |
| ! | AACTATCATAAAAGAAGGAA+GGG | - | chr4_4:63217091-63217110 | None:intergenic | 25.0% |
| ! | TCATCAACTATCATAAAAGA+AGG | - | chr4_4:63217096-63217115 | None:intergenic | 25.0% |
| !! | TGATGATAATGTATCTAAGA+AGG | + | chr4_4:63217123-63217142 | Msa0693960:CDS | 25.0% |
| ! | TAACACTGATAGATATTCTA+AGG | + | chr4_4:63217323-63217342 | Msa0693960:CDS | 25.0% |
| ! | TTTCATGAATTCATATTACC+GGG | - | chr4_4:63217480-63217499 | None:intergenic | 25.0% |
| ! | AATTATATACTTCTGCAATG+TGG | - | chr4_4:63217727-63217746 | None:intergenic | 25.0% |
| ! | ATTTCTCATCAAACATTTGT+AGG | + | chr4_4:63217816-63217835 | Msa0693960:intron | 25.0% |
| ! | CCCCATAAATATAAGTTTAT+AGG | - | chr4_4:63217962-63217981 | None:intergenic | 25.0% |
| ! | ATCGTTTAATTCTTCAGATA+AGG | - | chr4_4:63218001-63218020 | None:intergenic | 25.0% |
| ! | TAAGATTGTCATGAAATTTC+AGG | + | chr4_4:63218055-63218074 | Msa0693960:intron | 25.0% |
| ! | AAGATTGTCATGAAATTTCA+GGG | + | chr4_4:63218056-63218075 | Msa0693960:intron | 25.0% |
| !!! | AACAGAAAAGGATTTTAGTA+AGG | - | chr4_4:63218273-63218292 | None:intergenic | 25.0% |
| !! | CTAAAATCCTTTTCTGTTAA+AGG | + | chr4_4:63218275-63218294 | Msa0693960:intron | 25.0% |
| ! | TTCTTATCCTTTAACAGAAA+AGG | - | chr4_4:63218285-63218304 | None:intergenic | 25.0% |
| !! | TTTTCTGTTAAAGGATAAGA+AGG | + | chr4_4:63218284-63218303 | Msa0693960:intron | 25.0% |
| ! | AGGTCTGATAGAAAATTTAT+AGG | + | chr4_4:63218541-63218560 | Msa0693960:three_prime_UTR | 25.0% |
| ! | AATCAAAACAATGCGTTAAA+GGG | - | chr4_4:63218621-63218640 | None:intergenic | 25.0% |
| ! | TAATCAAAACAATGCGTTAA+AGG | - | chr4_4:63218622-63218641 | None:intergenic | 25.0% |
| ! | TTGGATGTAATTTCCATATT+CGG | + | chr4_4:63218770-63218789 | Msa0693960:three_prime_UTR | 25.0% |
| AAGAAAACCATTATCCTAAC+CGG | + | chr4_4:63215215-63215234 | Msa0693960:five_prime_UTR | 30.0% | |
| TTTGATCTTATTGCTTTACC+TGG | + | chr4_4:63215637-63215656 | Msa0693960:CDS | 30.0% | |
| ! | ATTGTGATTTTGTTGAAGCT+CGG | + | chr4_4:63215872-63215891 | Msa0693960:intron | 30.0% |
| TTACATGTTTGCTTTAACCT+TGG | + | chr4_4:63216127-63216146 | Msa0693960:CDS | 30.0% | |
| CTTGAAGTCAACATTATAAC+TGG | + | chr4_4:63216271-63216290 | Msa0693960:intron | 30.0% | |
| ACATACTGAATTAGTTGAAC+TGG | + | chr4_4:63216433-63216452 | Msa0693960:intron | 30.0% | |
| ! | ATCATTTTGCATCAATCCTT+TGG | - | chr4_4:63216488-63216507 | None:intergenic | 30.0% |
| ! | GCAAAATGATGAATTTTGCT+TGG | + | chr4_4:63216498-63216517 | Msa0693960:intron | 30.0% |
| ATAATTGTGTTCGAGAGAAA+TGG | + | chr4_4:63216618-63216637 | Msa0693960:intron | 30.0% | |
| ! | TTTTCACTGTTAAATGGGAT+TGG | + | chr4_4:63216695-63216714 | Msa0693960:intron | 30.0% |
| ACATTATACATCTAACAGCT+TGG | + | chr4_4:63216760-63216779 | Msa0693960:intron | 30.0% | |
| CATTATACATCTAACAGCTT+GGG | + | chr4_4:63216761-63216780 | Msa0693960:intron | 30.0% | |
| TCAGAAACGGTAAAAGAAAA+TGG | + | chr4_4:63216852-63216871 | Msa0693960:intron | 30.0% | |
| GATCCAGATTTCAAAATTTC+AGG | - | chr4_4:63216960-63216979 | None:intergenic | 30.0% | |
| !!! | AATTTTGAAATCTGGATCCT+AGG | + | chr4_4:63216962-63216981 | Msa0693960:intron | 30.0% |
| ATAAATCAACACCAAAACCT+AGG | - | chr4_4:63216982-63217001 | None:intergenic | 30.0% | |
| CAACTATCATAAAAGAAGGA+AGG | - | chr4_4:63217092-63217111 | None:intergenic | 30.0% | |
| AGGAGTTCAATGAAATTGAT+TGG | + | chr4_4:63217143-63217162 | Msa0693960:CDS | 30.0% | |
| !! | AATGAAATTGATTGGTCTGT+TGG | + | chr4_4:63217151-63217170 | Msa0693960:CDS | 30.0% |
| ACATGATTTGATTATTCTCC+CGG | + | chr4_4:63217459-63217478 | Msa0693960:CDS | 30.0% | |
| !!! | ATGAGAACTGACTTTTTTGA+TGG | - | chr4_4:63217576-63217595 | None:intergenic | 30.0% |
| GATAAGGACTACAATTTGAA+GGG | - | chr4_4:63217985-63218004 | None:intergenic | 30.0% | |
| AGATAAGGACTACAATTTGA+AGG | - | chr4_4:63217986-63218005 | None:intergenic | 30.0% | |
| AATTCAGCTGGAAGAATATA+CGG | + | chr4_4:63218143-63218162 | Msa0693960:CDS | 30.0% | |
| ACACAAACAAGGTTTACTAA+AGG | + | chr4_4:63218193-63218212 | Msa0693960:CDS | 30.0% | |
| GAATCACAATGGTAACAAAA+GGG | - | chr4_4:63218228-63218247 | None:intergenic | 30.0% | |
| AGAATCACAATGGTAACAAA+AGG | - | chr4_4:63218229-63218248 | None:intergenic | 30.0% | |
| AATTGGATCAAGAATCACAA+TGG | - | chr4_4:63218239-63218258 | None:intergenic | 30.0% | |
| TTAAGATTGTCTATGGAAGA+GGG | - | chr4_4:63218321-63218340 | None:intergenic | 30.0% | |
| ! | TTTAAGATTGTCTATGGAAG+AGG | - | chr4_4:63218322-63218341 | None:intergenic | 30.0% |
| TCCATAGACAATCTTAAAGA+CGG | + | chr4_4:63218324-63218343 | Msa0693960:CDS | 30.0% | |
| TTTGCCATCAATAACTACTA+CGG | - | chr4_4:63218364-63218383 | None:intergenic | 30.0% | |
| ATCAAAACAATGCGTTAAAG+GGG | - | chr4_4:63218620-63218639 | None:intergenic | 30.0% | |
| CATACATCCAGTTGTTAAAA+GGG | + | chr4_4:63218836-63218855 | Msa0693960:three_prime_UTR | 30.0% | |
| AATCACATGTAAACAAGCTG+AGG | + | chr4_4:63215708-63215727 | Msa0693960:CDS | 35.0% | |
| GTAAACAAGCTGAGGAAAAT+AGG | + | chr4_4:63215716-63215735 | Msa0693960:CDS | 35.0% | |
| GCTGAGGAAAATAGGTTATT+TGG | + | chr4_4:63215724-63215743 | Msa0693960:CDS | 35.0% | |
| CAAACATGCACGAAACAAAA+AGG | - | chr4_4:63215819-63215838 | None:intergenic | 35.0% | |
| TAAGTTTGTCAGAATCACAG+TGG | - | chr4_4:63215916-63215935 | None:intergenic | 35.0% | |
| CAAACAATATAGCGAGTGTT+TGG | - | chr4_4:63215947-63215966 | None:intergenic | 35.0% | |
| TGTTATCTTGCAAGACAAAC+TGG | - | chr4_4:63216006-63216025 | None:intergenic | 35.0% | |
| ! | TCCAACATTCAGGTTTCAAA+CGG | + | chr4_4:63216074-63216093 | Msa0693960:CDS | 35.0% |
| TCAATTTGTAAGCCCTGAAT+TGG | + | chr4_4:63216335-63216354 | Msa0693960:intron | 35.0% | |
| TTGAACTGGAGAGTTTACAA+AGG | + | chr4_4:63216447-63216466 | Msa0693960:intron | 35.0% | |
| TGAACTGGAGAGTTTACAAA+GGG | + | chr4_4:63216448-63216467 | Msa0693960:intron | 35.0% | |
| GGTGGAAAACAAAAATCCAA+AGG | + | chr4_4:63216469-63216488 | Msa0693960:intron | 35.0% | |
| !!! | TCATTCTTTGAGCTAGCTTT+TGG | - | chr4_4:63216728-63216747 | None:intergenic | 35.0% |
| AACGGTAAAAGAAAATGGTG+CGG | + | chr4_4:63216857-63216876 | Msa0693960:intron | 35.0% | |
| !!! | GACCCTGAAATTTTGAAATC+TGG | + | chr4_4:63216954-63216973 | Msa0693960:intron | 35.0% |
| GCATCAGATATCACAAAGAA+TGG | - | chr4_4:63217029-63217048 | None:intergenic | 35.0% | |
| TTGTGATATCTGATGCATGT+TGG | + | chr4_4:63217033-63217052 | Msa0693960:intron | 35.0% | |
| ATAAGACAGTAACCTACACT+GGG | - | chr4_4:63217187-63217206 | None:intergenic | 35.0% | |
| TATAAGACAGTAACCTACAC+TGG | - | chr4_4:63217188-63217207 | None:intergenic | 35.0% | |
| ACATGTATGTTATGCTAACC+AGG | + | chr4_4:63217258-63217277 | Msa0693960:intron | 35.0% | |
| !!! | TGCTGCATTTTTTTTGTCTG+TGG | + | chr4_4:63217510-63217529 | Msa0693960:intron | 35.0% |
| !!! | TTGTCTGTGGTGCTATTTTA+TGG | + | chr4_4:63217523-63217542 | Msa0693960:intron | 35.0% |
| GTTTATAGGTGCTTATGAAG+AGG | - | chr4_4:63217948-63217967 | None:intergenic | 35.0% | |
| TCTTAGCAACAAAGAACGAT+GGG | - | chr4_4:63218040-63218059 | None:intergenic | 35.0% | |
| ATCTTAGCAACAAAGAACGA+TGG | - | chr4_4:63218041-63218060 | None:intergenic | 35.0% | |
| ATTGTCATGAAATTTCAGGG+AGG | + | chr4_4:63218059-63218078 | Msa0693960:intron | 35.0% | |
| CTCAAAGAACAAAATTCAGC+TGG | + | chr4_4:63218131-63218150 | Msa0693960:CDS | 35.0% | |
| GTAAGGCTTCACTAAAGAAT+TGG | - | chr4_4:63218256-63218275 | None:intergenic | 35.0% | |
| !! | TCCGTCTTTAAGATTGTCTA+TGG | - | chr4_4:63218328-63218347 | None:intergenic | 35.0% |
| GCTATTGTGAGCAAGTTATT+TGG | + | chr4_4:63218429-63218448 | Msa0693960:CDS | 35.0% | |
| GTGAGCAAGTTATTTGGTAA+TGG | + | chr4_4:63218435-63218454 | Msa0693960:CDS | 35.0% | |
| TCCTAGGATACTCAAAAACA+AGG | - | chr4_4:63218485-63218504 | None:intergenic | 35.0% | |
| AAATAGACTACTAGAGCATG+TGG | + | chr4_4:63218504-63218523 | Msa0693960:exon | 35.0% | |
| ! | ATGTGGTTTCAAGTACTTGT+AGG | + | chr4_4:63218521-63218540 | Msa0693960:three_prime_UTR | 35.0% |
| TCAAAACAATGCGTTAAAGG+GGG | - | chr4_4:63218619-63218638 | None:intergenic | 35.0% | |
| AAAATGAGATTCAGAGGACA+TGG | - | chr4_4:63218663-63218682 | None:intergenic | 35.0% | |
| !! | CTCTGAATCTCATTTTTCGA+GGG | + | chr4_4:63218667-63218686 | Msa0693960:three_prime_UTR | 35.0% |
| ATAGGAAAAAGTTACCTGCA+GGG | + | chr4_4:63218698-63218717 | Msa0693960:three_prime_UTR | 35.0% | |
| GTTTCAGCTTAGTTGAACAT+TGG | + | chr4_4:63218751-63218770 | Msa0693960:three_prime_UTR | 35.0% | |
| ! | ATTTTCAACTCTGCCGAATA+TGG | - | chr4_4:63218786-63218805 | None:intergenic | 35.0% |
| ! | CCTTTTAACAACTGGATGTA+TGG | - | chr4_4:63218838-63218857 | None:intergenic | 35.0% |
| CCATACATCCAGTTGTTAAA+AGG | + | chr4_4:63218835-63218854 | Msa0693960:three_prime_UTR | 35.0% | |
| AAGGGTGGATAAGGGTTTAA+GGG | - | chr4_4:63215350-63215369 | None:intergenic | 40.0% | |
| AAAGGGTGGATAAGGGTTTA+AGG | - | chr4_4:63215351-63215370 | None:intergenic | 40.0% | |
| ! | AAGAAGGACTTTCTTTGGAG+GGG | - | chr4_4:63215446-63215465 | None:intergenic | 40.0% |
| GAAGAAGGACTTTCTTTGGA+GGG | - | chr4_4:63215447-63215466 | None:intergenic | 40.0% | |
| ATGGGAAGAAGGACTTTCTT+TGG | - | chr4_4:63215451-63215470 | None:intergenic | 40.0% | |
| AAGAAAGTCCTTCTTCCCAT+CGG | + | chr4_4:63215451-63215470 | Msa0693960:CDS | 40.0% | |
| GATAACTGCTTCCATTTCCT+CGG | - | chr4_4:63215485-63215504 | None:intergenic | 40.0% | |
| GATCTTATTGCTTTACCTGG+AGG | + | chr4_4:63215640-63215659 | Msa0693960:CDS | 40.0% | |
| ! | TGCTGTTACTCTTTTGCCTT+GGG | + | chr4_4:63215765-63215784 | Msa0693960:CDS | 40.0% |
| TTTCTCTTCAAAAGACCCCA+AGG | - | chr4_4:63215784-63215803 | None:intergenic | 40.0% | |
| !! | GGGTCTTTTGAAGAGAAAGA+AGG | + | chr4_4:63215786-63215805 | Msa0693960:CDS | 40.0% |
| GAAGCTTGTGGAAAAATGCA+GGG | - | chr4_4:63216034-63216053 | None:intergenic | 40.0% | |
| ! | CCAACATTCAGGTTTCAAAC+GGG | + | chr4_4:63216075-63216094 | Msa0693960:CDS | 40.0% |
| TGCGTTATCACACCAATTCA+GGG | - | chr4_4:63216350-63216369 | None:intergenic | 40.0% | |
| ATGCGTTATCACACCAATTC+AGG | - | chr4_4:63216351-63216370 | None:intergenic | 40.0% | |
| ! | TGGTGTGATAACGCATAAAC+TGG | + | chr4_4:63216355-63216374 | Msa0693960:intron | 40.0% |
| TTGTGTTCGAGAGAAATGGA+AGG | + | chr4_4:63216622-63216641 | Msa0693960:intron | 40.0% | |
| !!! | CTTTGAGCTAGCTTTTGGAT+GGG | - | chr4_4:63216723-63216742 | None:intergenic | 40.0% |
| !!! | TCTTTGAGCTAGCTTTTGGA+TGG | - | chr4_4:63216724-63216743 | None:intergenic | 40.0% |
| ATTGGAATCCCACATTGATC+AGG | - | chr4_4:63216789-63216808 | None:intergenic | 40.0% | |
| ACGGTAAAAGAAAATGGTGC+GGG | + | chr4_4:63216858-63216877 | Msa0693960:intron | 40.0% | |
| GAAAATGGTGCGGGAAAAAT+TGG | + | chr4_4:63216867-63216886 | Msa0693960:intron | 40.0% | |
| ! | GAAATCTGGATCCTAGGTTT+TGG | + | chr4_4:63216968-63216987 | Msa0693960:intron | 40.0% |
| TAAGACAGTAACCTACACTG+GGG | - | chr4_4:63217186-63217205 | None:intergenic | 40.0% | |
| GCTTCTGTTGAGAAAACTCT+TGG | + | chr4_4:63217370-63217389 | Msa0693960:CDS | 40.0% | |
| TGAGAAAACTCTTGGAGTCA+TGG | + | chr4_4:63217378-63217397 | Msa0693960:CDS | 40.0% | |
| TTTGTGTAGAATAGCAGGTG+AGG | - | chr4_4:63218180-63218199 | None:intergenic | 40.0% | |
| ! | CCTTGTTTGTGTAGAATAGC+AGG | - | chr4_4:63218185-63218204 | None:intergenic | 40.0% |
| CCTGCTATTCTACACAAACA+AGG | + | chr4_4:63218182-63218201 | Msa0693960:CDS | 40.0% | |
| GATGCCGTAGTAGTTATTGA+TGG | + | chr4_4:63218357-63218376 | Msa0693960:CDS | 40.0% | |
| !!! | GCCTTGTTTTTGAGTATCCT+AGG | + | chr4_4:63218481-63218500 | Msa0693960:CDS | 40.0% |
| GCTCTAGTAGTCTATTTCCT+AGG | - | chr4_4:63218501-63218520 | None:intergenic | 40.0% | |
| CCTGAAAACAAATCAGGCTT+GGG | - | chr4_4:63218580-63218599 | None:intergenic | 40.0% | |
| ACCTGAAAACAAATCAGGCT+TGG | - | chr4_4:63218581-63218600 | None:intergenic | 40.0% | |
| !!! | AAGCCTGATTTGTTTTCAGG+TGG | + | chr4_4:63218580-63218599 | Msa0693960:three_prime_UTR | 40.0% |
| ACACCACCTGAAAACAAATC+AGG | - | chr4_4:63218586-63218605 | None:intergenic | 40.0% | |
| CCTCGAAAAATGAGATTCAG+AGG | - | chr4_4:63218669-63218688 | None:intergenic | 40.0% | |
| !! | CCTCTGAATCTCATTTTTCG+AGG | + | chr4_4:63218666-63218685 | Msa0693960:three_prime_UTR | 40.0% |
| !!! | GAATCTCATTTTTCGAGGGA+TGG | + | chr4_4:63218671-63218690 | Msa0693960:three_prime_UTR | 40.0% |
| CATAGGAAAAAGTTACCTGC+AGG | + | chr4_4:63218697-63218716 | Msa0693960:three_prime_UTR | 40.0% | |
| ! | TTATATTTTGCACACCCTGC+AGG | - | chr4_4:63218715-63218734 | None:intergenic | 40.0% |
| GGCAGAGTTGAAAATATGCT+GGG | + | chr4_4:63218791-63218810 | Msa0693960:three_prime_UTR | 40.0% | |
| ! | TCTCAGTCCCTTTTAACAAC+TGG | - | chr4_4:63218846-63218865 | None:intergenic | 40.0% |
| CGCAATTCCGGTTAGGATAA+TGG | - | chr4_4:63215225-63215244 | None:intergenic | 45.0% | |
| AAGAAGTAGGAGCAACGACA+TGG | - | chr4_4:63215263-63215282 | None:intergenic | 45.0% | |
| AAGGTTGAGGCAGAAGAAGT+AGG | - | chr4_4:63215276-63215295 | None:intergenic | 45.0% | |
| !! | GAATGGAGAGAGTCTTGTTG+TGG | - | chr4_4:63215305-63215324 | None:intergenic | 45.0% |
| TTTAAGGGTGAGAGTGGATG+TGG | - | chr4_4:63215335-63215354 | None:intergenic | 45.0% | |
| TAAGGGTTTAAGGGTGAGAG+TGG | - | chr4_4:63215341-63215360 | None:intergenic | 45.0% | |
| ! | AGAAGGACTTTCTTTGGAGG+GGG | - | chr4_4:63215445-63215464 | None:intergenic | 45.0% |
| GGAAGAAGGACTTTCTTTGG+AGG | - | chr4_4:63215448-63215467 | None:intergenic | 45.0% | |
| AACTTGAAGCTGAGGCTCAA+CGG | - | chr4_4:63215554-63215573 | None:intergenic | 45.0% | |
| TCTCTCAATCTTGCTGAACC+AGG | - | chr4_4:63215670-63215689 | None:intergenic | 45.0% | |
| CAAGGCAAAAGAGTAACAGC+AGG | - | chr4_4:63215766-63215785 | None:intergenic | 45.0% | |
| ! | CTGCTGTTACTCTTTTGCCT+TGG | + | chr4_4:63215764-63215783 | Msa0693960:CDS | 45.0% |
| ! | GCTGTTACTCTTTTGCCTTG+GGG | + | chr4_4:63215766-63215785 | Msa0693960:CDS | 45.0% |
| GAAGCTCGGAAGTAAACTTG+CGG | + | chr4_4:63215886-63215905 | Msa0693960:intron | 45.0% | |
| GGAAGCTTGTGGAAAAATGC+AGG | - | chr4_4:63216035-63216054 | None:intergenic | 45.0% | |
| ! | TCCACAAGCTTCCAACGTTT+TGG | + | chr4_4:63216042-63216061 | Msa0693960:intron | 45.0% |
| ! | CCACAAGCTTCCAACGTTTT+GGG | + | chr4_4:63216043-63216062 | Msa0693960:intron | 45.0% |
| GACTTAACAGCCCAAAACGT+TGG | - | chr4_4:63216056-63216075 | None:intergenic | 45.0% | |
| GGCTGTTAAGTCCAACATTC+AGG | + | chr4_4:63216064-63216083 | Msa0693960:CDS | 45.0% | |
| ! | CCCGTTTGAAACCTGAATGT+TGG | - | chr4_4:63216078-63216097 | None:intergenic | 45.0% |
| CAAACATGTAAGCAGTTCCC+GGG | - | chr4_4:63216118-63216137 | None:intergenic | 45.0% | |
| GCAAACATGTAAGCAGTTCC+CGG | - | chr4_4:63216119-63216138 | None:intergenic | 45.0% | |
| AAGGGAGGTTGCTGAATTCT+TGG | + | chr4_4:63216178-63216197 | Msa0693960:CDS | 45.0% | |
| CTGTTTGACCAGCTAGACTA+TGG | - | chr4_4:63216384-63216403 | None:intergenic | 45.0% | |
| ACTGGAGAGTTTACAAAGGG+TGG | + | chr4_4:63216451-63216470 | Msa0693960:intron | 45.0% | |
| AGAGAAATGGAAGGCAGGTT+AGG | + | chr4_4:63216631-63216650 | Msa0693960:intron | 45.0% | |
| CTTGGGAACCTGATCAATGT+GGG | + | chr4_4:63216778-63216797 | Msa0693960:intron | 45.0% | |
| AAGACAGTAACCTACACTGG+GGG | - | chr4_4:63217185-63217204 | None:intergenic | 45.0% | |
| GTGGCTTCAAACATGAGAGT+TGG | - | chr4_4:63217708-63217727 | None:intergenic | 45.0% | |
| TAGCAACAAAGAACGATGGG+TGG | - | chr4_4:63218037-63218056 | None:intergenic | 45.0% | |
| AAATTTCAGGGAGGAACTGC+TGG | + | chr4_4:63218068-63218087 | Msa0693960:intron | 45.0% | |
| TGGCAAAGTGATCACTTGTG+AGG | + | chr4_4:63218377-63218396 | Msa0693960:CDS | 45.0% | |
| GGCAAAGTGATCACTTGTGA+GGG | + | chr4_4:63218378-63218397 | Msa0693960:CDS | 45.0% | |
| CAATGCAAACTCCGTTACAG+TGG | - | chr4_4:63218409-63218428 | None:intergenic | 45.0% | |
| ! | CACTGTAACGGAGTTTGCAT+TGG | + | chr4_4:63218407-63218426 | Msa0693960:CDS | 45.0% |
| ! | AGAGCAAGAAGTGTAGCAGA+AGG | + | chr4_4:63218459-63218478 | Msa0693960:CDS | 45.0% |
| AAACAAATCAGGCTTGGGCT+GGG | - | chr4_4:63218575-63218594 | None:intergenic | 45.0% | |
| AAAACAAATCAGGCTTGGGC+TGG | - | chr4_4:63218576-63218595 | None:intergenic | 45.0% | |
| !!! | CCCAAGCCTGATTTGTTTTC+AGG | + | chr4_4:63218577-63218596 | Msa0693960:three_prime_UTR | 45.0% |
| GATTCAGAGGACATGGTGAT+TGG | - | chr4_4:63218656-63218675 | None:intergenic | 45.0% | |
| !! | TTTTCGAGGGATGGTTGCAT+AGG | + | chr4_4:63218680-63218699 | Msa0693960:three_prime_UTR | 45.0% |
| CGGCAGAGTTGAAAATATGC+TGG | + | chr4_4:63218790-63218809 | Msa0693960:three_prime_UTR | 45.0% | |
| CTGTTACCACAGCGCAATTC+CGG | - | chr4_4:63215237-63215256 | None:intergenic | 50.0% | |
| !! | TGGAGAGAGTCTTGTTGTGG+CGG | - | chr4_4:63215302-63215321 | None:intergenic | 50.0% |
| GTGGATGTGGAGATGGTGAA+TGG | - | chr4_4:63215322-63215341 | None:intergenic | 50.0% | |
| GGAGGTGAAAGGGTGGATAA+GGG | - | chr4_4:63215358-63215377 | None:intergenic | 50.0% | |
| TGGAGGTGAAAGGGTGGATA+AGG | - | chr4_4:63215359-63215378 | None:intergenic | 50.0% | |
| GAAATGGAGAGGGTGGAGTT+TGG | - | chr4_4:63215391-63215410 | None:intergenic | 50.0% | |
| TGGAGAGGTGGAAATGGAGA+GGG | - | chr4_4:63215401-63215420 | None:intergenic | 50.0% | |
| ! | TTTGGAGGGGGTGCATTTGT+GGG | - | chr4_4:63215433-63215452 | None:intergenic | 50.0% |
| !! | GTCCTTCTTCCCATCGGTTT+CGG | + | chr4_4:63215457-63215476 | Msa0693960:CDS | 50.0% |
| GCAGCTACAACTTGAAGCTG+AGG | - | chr4_4:63215562-63215581 | None:intergenic | 50.0% | |
| !! | CAGCTTCAAGTTGTAGCTGC+TGG | + | chr4_4:63215562-63215581 | Msa0693960:CDS | 50.0% |
| !! | CTTCAAGTTGTAGCTGCTGG+AGG | + | chr4_4:63215565-63215584 | Msa0693960:CDS | 50.0% |
| CCCAAAACGTTGGAAGCTTG+TGG | - | chr4_4:63216046-63216065 | None:intergenic | 50.0% | |
| TGTTTGGGGAGTCTGTTGCA+AGG | + | chr4_4:63216159-63216178 | Msa0693960:CDS | 50.0% | |
| GTTTGGGGAGTCTGTTGCAA+GGG | + | chr4_4:63216160-63216179 | Msa0693960:CDS | 50.0% | |
| ACTGGAAGCCATAGTCTAGC+TGG | + | chr4_4:63216373-63216392 | Msa0693960:intron | 50.0% | |
| GTTCGAGAGAAATGGAAGGC+AGG | + | chr4_4:63216626-63216645 | Msa0693960:intron | 50.0% | |
| GCTTGGGAACCTGATCAATG+TGG | + | chr4_4:63216777-63216796 | Msa0693960:intron | 50.0% | |
| AGACAGTAACCTACACTGGG+GGG | - | chr4_4:63217184-63217203 | None:intergenic | 50.0% | |
| TTGTCCATGCTTCTGCAACG+AGG | + | chr4_4:63217230-63217249 | Msa0693960:intron | 50.0% | |
| AGATCCTCGTTGCAGAAGCA+TGG | - | chr4_4:63217237-63217256 | None:intergenic | 50.0% | |
| CTTCAGAACCATGCGCGATT+GGG | - | chr4_4:63217291-63217310 | None:intergenic | 50.0% | |
| TCTTCAGAACCATGCGCGAT+TGG | - | chr4_4:63217292-63217311 | None:intergenic | 50.0% | |
| CTTGGAGTCATGGCTTCTCA+AGG | + | chr4_4:63217388-63217407 | Msa0693960:CDS | 50.0% | |
| CAAGCTGCTGCATTTCTGTG+TGG | + | chr4_4:63217614-63217633 | Msa0693960:intron | 50.0% | |
| AATAGCAGGTGAGGAGCAGA+CGG | - | chr4_4:63218171-63218190 | None:intergenic | 50.0% | |
| TGAGGGACTTGCCACTGTAA+CGG | + | chr4_4:63218395-63218414 | Msa0693960:CDS | 50.0% | |
| AACAAATCAGGCTTGGGCTG+GGG | - | chr4_4:63218574-63218593 | None:intergenic | 50.0% | |
| TCCTAACCGGAATTGCGCTG+TGG | + | chr4_4:63215228-63215247 | Msa0693960:five_prime_UTR | 55.0% | |
| ACCACAGCGCAATTCCGGTT+AGG | - | chr4_4:63215232-63215251 | None:intergenic | 55.0% | |
| !! | AGTCTTGTTGTGGCGGTGGA+AGG | - | chr4_4:63215295-63215314 | None:intergenic | 55.0% |
| !! | AGAGAGTCTTGTTGTGGCGG+TGG | - | chr4_4:63215299-63215318 | None:intergenic | 55.0% |
| GGTGAGAGTGGATGTGGAGA+TGG | - | chr4_4:63215329-63215348 | None:intergenic | 55.0% | |
| AGTGGAGCGTGGAGGTGAAA+GGG | - | chr4_4:63215368-63215387 | None:intergenic | 55.0% | |
| AGAGGTGGAAATGGAGAGGG+TGG | - | chr4_4:63215398-63215417 | None:intergenic | 55.0% | |
| GTGGAGAGGTGGAAATGGAG+AGG | - | chr4_4:63215402-63215421 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAGAGGTGGAAA+TGG | - | chr4_4:63215407-63215426 | None:intergenic | 55.0% |
| ! | CTTTGGAGGGGGTGCATTTG+TGG | - | chr4_4:63215434-63215453 | None:intergenic | 55.0% |
| TGCCGAAACCGATGGGAAGA+AGG | - | chr4_4:63215462-63215481 | None:intergenic | 55.0% | |
| TGACATGAGCACCAGCACGA+CGG | - | chr4_4:63215522-63215541 | None:intergenic | 55.0% | |
| CTGAGGCTCAACGGAAGCTA+CGG | - | chr4_4:63215545-63215564 | None:intergenic | 55.0% | |
| GCTTTACCTGGAGGAATGCC+TGG | + | chr4_4:63215649-63215668 | Msa0693960:CDS | 55.0% | |
| GCTCGGAAGTAAACTTGCGG+TGG | + | chr4_4:63215889-63215908 | Msa0693960:intron | 55.0% | |
| ! | AACGGGCTTACAACAAGCCG+TGG | + | chr4_4:63216092-63216111 | Msa0693960:CDS | 55.0% |
| ACCTTGGCTGAGCAGCTGTT+TGG | + | chr4_4:63216143-63216162 | Msa0693960:CDS | 55.0% | |
| CCTTGGCTGAGCAGCTGTTT+GGG | + | chr4_4:63216144-63216163 | Msa0693960:CDS | 55.0% | |
| CTTGGCTGAGCAGCTGTTTG+GGG | + | chr4_4:63216145-63216164 | Msa0693960:CDS | 55.0% | |
| AGTAACCTACACTGGGGGGA+TGG | - | chr4_4:63217180-63217199 | None:intergenic | 55.0% | |
| GTTCTCATCCCAATCGCGCA+TGG | + | chr4_4:63217280-63217299 | Msa0693960:CDS | 55.0% | |
| GCTGCTGCATTTCTGTGTGG+TGG | + | chr4_4:63217617-63217636 | Msa0693960:intron | 55.0% | |
| GTTGTGGCGGTGGAAGGTTG+AGG | - | chr4_4:63215289-63215308 | None:intergenic | 60.0% | |
| GAGTGGAGCGTGGAGGTGAA+AGG | - | chr4_4:63215369-63215388 | None:intergenic | 60.0% | |
| ! | GAGTTTGGAGTGGAGCGTGG+AGG | - | chr4_4:63215376-63215395 | None:intergenic | 60.0% |
| ! | GTGGAGTTTGGAGTGGAGCG+TGG | - | chr4_4:63215379-63215398 | None:intergenic | 60.0% |
| GGAGAGGGTGGAGTTTGGAG+TGG | - | chr4_4:63215386-63215405 | None:intergenic | 60.0% | |
| !! | GCATTTGTGGGTGGTGGTGG+TGG | - | chr4_4:63215421-63215440 | None:intergenic | 60.0% |
| ! | GGTGCATTTGTGGGTGGTGG+TGG | - | chr4_4:63215424-63215443 | None:intergenic | 60.0% |
| !! | TCCTCGGTGCCGAAACCGAT+GGG | - | chr4_4:63215469-63215488 | None:intergenic | 60.0% |
| !! | TTCCTCGGTGCCGAAACCGA+TGG | - | chr4_4:63215470-63215489 | None:intergenic | 60.0% |
| ! | CGGTTTCGGCACCGAGGAAA+TGG | + | chr4_4:63215471-63215490 | Msa0693960:CDS | 60.0% |
| GCTGAACCAGGCATTCCTCC+AGG | - | chr4_4:63215658-63215677 | None:intergenic | 60.0% | |
| GCTTACAACAAGCCGTGGCC+CGG | + | chr4_4:63216097-63216116 | Msa0693960:CDS | 60.0% | |
| CTTACAACAAGCCGTGGCCC+GGG | + | chr4_4:63216098-63216117 | Msa0693960:CDS | 60.0% | |
| TGTAAGCAGTTCCCGGGCCA+CGG | - | chr4_4:63216112-63216131 | None:intergenic | 60.0% | |
| CCCAAACAGCTGCTCAGCCA+AGG | - | chr4_4:63216147-63216166 | None:intergenic | 60.0% | |
| TGGGGAGTCTGTTGCAAGGG+AGG | + | chr4_4:63216163-63216182 | Msa0693960:CDS | 60.0% | |
| AACCTACACTGGGGGGATGG+TGG | - | chr4_4:63217177-63217196 | None:intergenic | 60.0% | |
| GCGCGATTGGGATGAGAACC+TGG | - | chr4_4:63217279-63217298 | None:intergenic | 60.0% | |
| GAGGAACTGCTGGCGCTCAA+AGG | + | chr4_4:63218078-63218097 | Msa0693960:CDS | 60.0% | |
| GGAGCGTGGAGGTGAAAGGG+TGG | - | chr4_4:63215365-63215384 | None:intergenic | 65.0% | |
| !! | TGTGGGTGGTGGTGGTGGAG+AGG | - | chr4_4:63215416-63215435 | None:intergenic | 65.0% |
| ! | GGGGGTGCATTTGTGGGTGG+TGG | - | chr4_4:63215427-63215446 | None:intergenic | 65.0% |
| ! | GGAGGGGGTGCATTTGTGGG+TGG | - | chr4_4:63215430-63215449 | None:intergenic | 65.0% |
| !! | TCCCATCGGTTTCGGCACCG+AGG | + | chr4_4:63215465-63215484 | Msa0693960:CDS | 65.0% |
| ATCCACGTCCTCCGTCGTGC+TGG | + | chr4_4:63215508-63215527 | Msa0693960:CDS | 65.0% | |
| CATGAGCACCAGCACGACGG+AGG | - | chr4_4:63215519-63215538 | None:intergenic | 65.0% | |
| !! | GGGTGGTGGTGGTGGAGAGG+TGG | - | chr4_4:63215413-63215432 | None:intergenic | 70.0% |
| CACCAGCACGACGGAGGACG+TGG | - | chr4_4:63215513-63215532 | None:intergenic | 70.0% | |
| GGCCACCATCCCCCCAGTGT+AGG | + | chr4_4:63217172-63217191 | Msa0693960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 63215173 | 63218893 | 63215173 | ID=Msa0693960;Name=Msa0693960 |
| chr4_4 | mRNA | 63215173 | 63218893 | 63215173 | ID=Msa0693960-mRNA-1;Parent=Msa0693960;Name=Msa0693960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89|0.66|0.71|0.85|1|1|7|384|466 |
| chr4_4 | exon | 63215173 | 63215807 | 63215173 | ID=Msa0693960-mRNA-1:exon:17726;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63215890 | 63215961 | 63215890 | ID=Msa0693960-mRNA-1:exon:17727;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63216050 | 63216199 | 63216050 | ID=Msa0693960-mRNA-1:exon:17728;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63217109 | 63217189 | 63217109 | ID=Msa0693960-mRNA-1:exon:17729;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63217280 | 63217480 | 63217280 | ID=Msa0693960-mRNA-1:exon:17730;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63218077 | 63218214 | 63218077 | ID=Msa0693960-mRNA-1:exon:17731;Parent=Msa0693960-mRNA-1 |
| chr4_4 | exon | 63218297 | 63218893 | 63218297 | ID=Msa0693960-mRNA-1:exon:17732;Parent=Msa0693960-mRNA-1 |
| chr4_4 | five_prime_UTR | 63215173 | 63215261 | 63215173 | ID=Msa0693960-mRNA-1:five_prime_utr;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63215262 | 63215807 | 63215262 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63215890 | 63215961 | 63215890 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63216050 | 63216199 | 63216050 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63217109 | 63217189 | 63217109 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63217280 | 63217480 | 63217280 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63218077 | 63218214 | 63218077 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | CDS | 63218297 | 63218509 | 63218297 | ID=Msa0693960-mRNA-1:cds;Parent=Msa0693960-mRNA-1 |
| chr4_4 | three_prime_UTR | 63218510 | 63218893 | 63218510 | ID=Msa0693960-mRNA-1:three_prime_utr;Parent=Msa0693960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
