AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572880 MtrunA17_Chr8g0388571 94.330 194 11 0 1 194 1 194 2.42e-137 381
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572880 AT1G64510.1 67.961 206 55 5 1 195 1 206 7.29e-90 262
Msa0572880 AT1G64510.2 67.961 206 55 5 1 195 25 230 1.58e-89 262

Find 67 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAATATTAGTTTATTT+TGG 0.171104 4_1:-75891099 Msa0572880:exon
ATTTGACCTCCTCGTACTTC+TGG 0.218535 4_1:+75892573 None:intergenic
CGGAAAAGTTGTTCCTGTTT+TGG 0.256932 4_1:+75892795 None:intergenic
TTTGTGCAGCTTCTTGTTGC+TGG 0.267997 4_1:-75891335 Msa0572880:intron
TTGTTATCTTAAATCATATT+AGG 0.289799 4_1:-75890808 Msa0572880:three_prime_UTR
TCTTTCTTTGAAGGTGGATT+TGG 0.299334 4_1:-75892743 Msa0572880:CDS
CTTTGAAGGTGGATTTGGTT+CGG 0.301133 4_1:-75892738 Msa0572880:CDS
TTCTCTGGTTCTTTCTTTGA+AGG 0.306160 4_1:-75892752 Msa0572880:CDS
TGAAAGTGGGAAATTGATTC+AGG 0.316800 4_1:+75892818 None:intergenic
TGTTTGCTCAAGGGCGGTTA+TGG 0.323023 4_1:+75891172 None:intergenic
CAAGCTTCAAAATCAGAAAA+AGG 0.332411 4_1:-75891118 Msa0572880:CDS
TGAACAACCGAATGGCAAAT+TGG 0.341405 4_1:+75890874 None:intergenic
TACAATGACTAGTGATGAAT+TGG 0.345009 4_1:-75890776 Msa0572880:three_prime_UTR
TTTCCCACTTTCACCAAAAC+AGG 0.358476 4_1:-75892808 Msa0572880:CDS
GACCCGGTTACTCCTGGAAC+CGG 0.365024 4_1:-75892710 Msa0572880:CDS
AACCCGGTTCCAGGAGTAAC+CGG 0.365845 4_1:+75892707 None:intergenic
GCCTAGGGTTTCTGCTTTAA+CGG 0.367900 4_1:+75892775 None:intergenic
TTTGAAGGTGGATTTGGTTC+GGG 0.368108 4_1:-75892737 Msa0572880:CDS
ACAGCAGTGAACCCGGTTCC+AGG 0.368389 4_1:+75892698 None:intergenic
AGGAGAAACCAACACGTATA+TGG 0.379973 4_1:-75891237 Msa0572880:CDS
CAGCTTCTTGTTGCTGGAGG+TGG 0.388533 4_1:-75891329 Msa0572880:CDS
GCAGAAACCCTAGGCTTCTC+TGG 0.408153 4_1:-75892767 Msa0572880:CDS
TATATTGCCAATTTGCCATT+CGG 0.420308 4_1:-75890881 Msa0572880:three_prime_UTR
TTTGACCTCCTCGTACTTCT+GGG 0.421257 4_1:+75892574 None:intergenic
AGAAAAGAAGAAGATGAAAG+TGG 0.446274 4_1:+75892878 None:intergenic
GATTCAGGAAATGCACGAAA+TGG 0.457389 4_1:+75892833 None:intergenic
TCTGGTTCTTTCTTTGAAGG+TGG 0.458081 4_1:-75892749 Msa0572880:CDS
AGAAAGAACCAGAGAAGCCT+AGG 0.460314 4_1:+75892759 None:intergenic
CGCTCATCCTCAGACATGTC+AGG 0.460581 4_1:+75892608 None:intergenic
CTCTTCCACAGCAGTGAACC+CGG 0.461041 4_1:+75892691 None:intergenic
GCTTCGTGAAGTAGGTGAAT+AGG 0.462140 4_1:+75891201 None:intergenic
GGTGATGACCCGGTTACTCC+TGG 0.466916 4_1:-75892716 Msa0572880:CDS
ATGAACTGTTAGCGAAAGAA+TGG 0.467273 4_1:+75892961 None:intergenic
CCTTGAGCAAACACTATTGA+CGG 0.475105 4_1:-75891162 Msa0572880:CDS
AATATATAGCACTTTGTACT+AGG 0.477160 4_1:+75890898 None:intergenic
ACTCAGACAGTACGAAACTA+TGG 0.491052 4_1:-75892642 Msa0572880:CDS
TTAAACTAAAAGAGAGATGT+AGG 0.497736 4_1:-75890953 Msa0572880:three_prime_UTR
GGACTCAGGCTTCGTGAAGT+AGG 0.512180 4_1:+75891193 None:intergenic
ACAATCATCATTTGTTGTTG+TGG 0.512294 4_1:-75891029 Msa0572880:three_prime_UTR
TCAAGGGCGGTTATGGACTC+AGG 0.515051 4_1:+75891179 None:intergenic
TTCTGGATGCTATATGCTAG+TGG 0.517463 4_1:+75891272 None:intergenic
ATTTGGTTCGGGTGATGACC+CGG 0.523594 4_1:-75892726 Msa0572880:CDS
GTGCAGCTTCTTGTTGCTGG+AGG 0.528018 4_1:-75891332 Msa0572880:intron
TGGAACCGGGTTCACTGCTG+TGG 0.528777 4_1:-75892696 Msa0572880:CDS
TGGAATTGAATTGAGTAAAG+AGG 0.543427 4_1:+75892898 None:intergenic
CTTCTAAGCAGAAGCATCGA+TGG 0.544630 4_1:-75892924 Msa0572880:exon
TCCGTTAAAGCAGAAACCCT+AGG 0.546122 4_1:-75892776 Msa0572880:CDS
CCGTCAATAGTGTTTGCTCA+AGG 0.548980 4_1:+75891162 None:intergenic
GCTGTGTGCACGCACTGAGT+TGG 0.552849 4_1:-75893014 Msa0572880:five_prime_UTR
CGTCAATAGTGTTTGCTCAA+GGG 0.562059 4_1:+75891163 None:intergenic
GAAGAACCGCAATGTCCACC+TGG 0.563779 4_1:-75892665 Msa0572880:CDS
GTTTCGTACTGTCTGAGTCC+AGG 0.567223 4_1:+75892647 None:intergenic
ACCCGGTTACTCCTGGAACC+GGG 0.601404 4_1:-75892709 Msa0572880:CDS
ACCCGGTTCCAGGAGTAACC+GGG 0.603784 4_1:+75892708 None:intergenic
GATGCCGTCCATATACGTGT+TGG 0.610520 4_1:+75891229 None:intergenic
GAAAGAACCAGAGAAGCCTA+GGG 0.615293 4_1:+75892760 None:intergenic
CTGAGTCCAGGTGGACATTG+CGG 0.619818 4_1:+75892659 None:intergenic
TCGTGAAGTAGGTGAATAGG+AGG 0.634881 4_1:+75891204 None:intergenic
TTAATATGTGAACAACCGAA+TGG 0.638417 4_1:+75890866 None:intergenic
CAATAGTGTTTGCTCAAGGG+CGG 0.640418 4_1:+75891166 None:intergenic
GAAACCAACACGTATATGGA+CGG 0.655460 4_1:-75891233 Msa0572880:CDS
TGGAGGTGGCATGTATGTAG+AGG 0.659352 4_1:-75891315 Msa0572880:CDS
TTTAAGGCCTGACATGTCTG+AGG 0.660772 4_1:-75892615 Msa0572880:CDS
TGCACTCACCCAGAAGTACG+AGG 0.696215 4_1:-75892582 Msa0572880:CDS
CGAAATGGAGAAGATGACTG+AGG 0.700648 4_1:+75892848 None:intergenic
TCGTACTGTCTGAGTCCAGG+TGG 0.727253 4_1:+75892650 None:intergenic
ACTCACCCAGAAGTACGAGG+AGG 0.791351 4_1:-75892579 Msa0572880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGGAAATATTAGTTTATTT+TGG - chr4_1:75892694-75892713 Msa0572880:CDS 15.0%
!! TTGTTATCTTAAATCATATT+AGG - chr4_1:75892985-75893004 Msa0572880:five_prime_UTR 15.0%
!!! AAGGAAATATTAGTTTATTT+TGG - chr4_1:75892694-75892713 Msa0572880:CDS 15.0%
!! TTGTTATCTTAAATCATATT+AGG - chr4_1:75892985-75893004 Msa0572880:five_prime_UTR 15.0%
!!! GGATATTAATTTAACTTCAA+CGG + chr4_1:75892308-75892327 None:intergenic 20.0%
!!! TGTTTTCTTACATTTTCATA+TGG - chr4_1:75892789-75892808 Msa0572880:CDS 20.0%
!!! ATTCAAGTATTTTTGTAACA+AGG - chr4_1:75892812-75892831 Msa0572880:CDS 20.0%
!!! GTCTAAATTTTCATATTTAG+AGG - chr4_1:75892950-75892969 Msa0572880:five_prime_UTR 20.0%
!!! GGATATTAATTTAACTTCAA+CGG + chr4_1:75892308-75892327 None:intergenic 20.0%
!!! TGTTTTCTTACATTTTCATA+TGG - chr4_1:75892789-75892808 Msa0572880:CDS 20.0%
!!! ATTCAAGTATTTTTGTAACA+AGG - chr4_1:75892812-75892831 Msa0572880:CDS 20.0%
!!! GTCTAAATTTTCATATTTAG+AGG - chr4_1:75892950-75892969 Msa0572880:five_prime_UTR 20.0%
! AAAAAAGATAGAGTCAGATA+AGG + chr4_1:75890805-75890824 None:intergenic 25.0%
! GGATTAACTTAACAAACAAA+AGG + chr4_1:75891252-75891271 None:intergenic 25.0%
! CACTTAGTTTATCATTCAAA+TGG + chr4_1:75891273-75891292 None:intergenic 25.0%
! GATTGCAATTCTAACAAATA+TGG + chr4_1:75891375-75891394 None:intergenic 25.0%
!!! GTTTGTTTTGAAAGAATGAA+GGG + chr4_1:75891476-75891495 None:intergenic 25.0%
!!! TGTTTGTTTTGAAAGAATGA+AGG + chr4_1:75891477-75891496 None:intergenic 25.0%
! AGCAATGACTTATTCAAATA+AGG + chr4_1:75891531-75891550 None:intergenic 25.0%
! AAAAATAGAGAACAATGGAA+GGG + chr4_1:75891844-75891863 None:intergenic 25.0%
! AAAAAATAGAGAACAATGGA+AGG + chr4_1:75891845-75891864 None:intergenic 25.0%
! ATCAATGCAATAACTTTAAG+CGG + chr4_1:75892137-75892156 None:intergenic 25.0%
! TATATCATCTAAACGAAGTT+TGG + chr4_1:75892162-75892181 None:intergenic 25.0%
!! CTATATCATTCTTTTCTCAT+TGG - chr4_1:75892407-75892426 Msa0572880:intron 25.0%
!!! AAGTATTTTTGTAACAAGGT+TGG - chr4_1:75892816-75892835 Msa0572880:CDS 25.0%
! TTAAACTAAAAGAGAGATGT+AGG - chr4_1:75892840-75892859 Msa0572880:CDS 25.0%
! AATATATAGCACTTTGTACT+AGG + chr4_1:75892898-75892917 None:intergenic 25.0%
! AAAAAAGATAGAGTCAGATA+AGG + chr4_1:75890805-75890824 None:intergenic 25.0%
! GGATTAACTTAACAAACAAA+AGG + chr4_1:75891252-75891271 None:intergenic 25.0%
! CACTTAGTTTATCATTCAAA+TGG + chr4_1:75891273-75891292 None:intergenic 25.0%
! GATTGCAATTCTAACAAATA+TGG + chr4_1:75891375-75891394 None:intergenic 25.0%
!!! GTTTGTTTTGAAAGAATGAA+GGG + chr4_1:75891476-75891495 None:intergenic 25.0%
!!! TGTTTGTTTTGAAAGAATGA+AGG + chr4_1:75891477-75891496 None:intergenic 25.0%
! AGCAATGACTTATTCAAATA+AGG + chr4_1:75891531-75891550 None:intergenic 25.0%
! AAAAATAGAGAACAATGGAA+GGG + chr4_1:75891844-75891863 None:intergenic 25.0%
! AAAAAATAGAGAACAATGGA+AGG + chr4_1:75891845-75891864 None:intergenic 25.0%
! ATCAATGCAATAACTTTAAG+CGG + chr4_1:75892137-75892156 None:intergenic 25.0%
! TATATCATCTAAACGAAGTT+TGG + chr4_1:75892162-75892181 None:intergenic 25.0%
!! CTATATCATTCTTTTCTCAT+TGG - chr4_1:75892407-75892426 Msa0572880:intron 25.0%
!!! AAGTATTTTTGTAACAAGGT+TGG - chr4_1:75892816-75892835 Msa0572880:CDS 25.0%
! TTAAACTAAAAGAGAGATGT+AGG - chr4_1:75892840-75892859 Msa0572880:CDS 25.0%
! AATATATAGCACTTTGTACT+AGG + chr4_1:75892898-75892917 None:intergenic 25.0%
TGGAATTGAATTGAGTAAAG+AGG + chr4_1:75890898-75890917 None:intergenic 30.0%
AGAAAAGAAGAAGATGAAAG+TGG + chr4_1:75890918-75890937 None:intergenic 30.0%
!! ACGAAACTATGGTTGTTTTA+AGG - chr4_1:75891162-75891181 Msa0572880:CDS 30.0%
ATGATAAACTAAGTGCTCTA+TGG - chr4_1:75891278-75891297 Msa0572880:CDS 30.0%
TATTCAAATAAGGTCGCAAA+GGG + chr4_1:75891521-75891540 None:intergenic 30.0%
TTATTCAAATAAGGTCGCAA+AGG + chr4_1:75891522-75891541 None:intergenic 30.0%
TCAAAAATTGTATTGGAGGA+GGG + chr4_1:75891762-75891781 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+AGG + chr4_1:75891766-75891785 None:intergenic 30.0%
TGGGAACTCAAAAATTGTAT+TGG + chr4_1:75891769-75891788 None:intergenic 30.0%
AAAATAGAGAACAATGGAAG+GGG + chr4_1:75891843-75891862 None:intergenic 30.0%
GTGGAAAAAATAGAGAACAA+TGG + chr4_1:75891849-75891868 None:intergenic 30.0%
!!! GAGGGTTTTGGAAAAAATAA+AGG + chr4_1:75891877-75891896 None:intergenic 30.0%
! ATTTTGTTCTACGAGACTTA+TGG - chr4_1:75892092-75892111 Msa0572880:intron 30.0%
GTTCACAATTGTGATTCTTA+AGG - chr4_1:75892260-75892279 Msa0572880:intron 30.0%
AGTTAGAGTCAAATCAAACT+TGG + chr4_1:75892329-75892348 None:intergenic 30.0%
! TATGTAGAGGTTTTTAACAG+AGG - chr4_1:75892491-75892510 Msa0572880:intron 30.0%
!!! TGATTTTGAAGCTTGTTGAT+CGG + chr4_1:75892670-75892689 None:intergenic 30.0%
CAAGCTTCAAAATCAGAAAA+AGG - chr4_1:75892675-75892694 Msa0572880:CDS 30.0%
!! ACAATCATCATTTGTTGTTG+TGG - chr4_1:75892764-75892783 Msa0572880:CDS 30.0%
TATATTGCCAATTTGCCATT+CGG - chr4_1:75892912-75892931 Msa0572880:exon 30.0%
TTAATATGTGAACAACCGAA+TGG + chr4_1:75892930-75892949 None:intergenic 30.0%
TACAATGACTAGTGATGAAT+TGG - chr4_1:75893017-75893036 Msa0572880:five_prime_UTR 30.0%
TGGAATTGAATTGAGTAAAG+AGG + chr4_1:75890898-75890917 None:intergenic 30.0%
AGAAAAGAAGAAGATGAAAG+TGG + chr4_1:75890918-75890937 None:intergenic 30.0%
!! ACGAAACTATGGTTGTTTTA+AGG - chr4_1:75891162-75891181 Msa0572880:CDS 30.0%
ATGATAAACTAAGTGCTCTA+TGG - chr4_1:75891278-75891297 Msa0572880:CDS 30.0%
TATTCAAATAAGGTCGCAAA+GGG + chr4_1:75891521-75891540 None:intergenic 30.0%
TTATTCAAATAAGGTCGCAA+AGG + chr4_1:75891522-75891541 None:intergenic 30.0%
TCAAAAATTGTATTGGAGGA+GGG + chr4_1:75891762-75891781 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+AGG + chr4_1:75891766-75891785 None:intergenic 30.0%
TGGGAACTCAAAAATTGTAT+TGG + chr4_1:75891769-75891788 None:intergenic 30.0%
AAAATAGAGAACAATGGAAG+GGG + chr4_1:75891843-75891862 None:intergenic 30.0%
GTGGAAAAAATAGAGAACAA+TGG + chr4_1:75891849-75891868 None:intergenic 30.0%
!!! GAGGGTTTTGGAAAAAATAA+AGG + chr4_1:75891877-75891896 None:intergenic 30.0%
! ATTTTGTTCTACGAGACTTA+TGG - chr4_1:75892092-75892111 Msa0572880:intron 30.0%
GTTCACAATTGTGATTCTTA+AGG - chr4_1:75892260-75892279 Msa0572880:intron 30.0%
AGTTAGAGTCAAATCAAACT+TGG + chr4_1:75892329-75892348 None:intergenic 30.0%
! TATGTAGAGGTTTTTAACAG+AGG - chr4_1:75892491-75892510 Msa0572880:intron 30.0%
!!! TGATTTTGAAGCTTGTTGAT+CGG + chr4_1:75892670-75892689 None:intergenic 30.0%
CAAGCTTCAAAATCAGAAAA+AGG - chr4_1:75892675-75892694 Msa0572880:CDS 30.0%
!! ACAATCATCATTTGTTGTTG+TGG - chr4_1:75892764-75892783 Msa0572880:CDS 30.0%
TATATTGCCAATTTGCCATT+CGG - chr4_1:75892912-75892931 Msa0572880:exon 30.0%
TTAATATGTGAACAACCGAA+TGG + chr4_1:75892930-75892949 None:intergenic 30.0%
TACAATGACTAGTGATGAAT+TGG - chr4_1:75893017-75893036 Msa0572880:five_prime_UTR 30.0%
ATGAACTGTTAGCGAAAGAA+TGG + chr4_1:75890835-75890854 None:intergenic 35.0%
! TGAAAGTGGGAAATTGATTC+AGG + chr4_1:75890978-75890997 None:intergenic 35.0%
!! TTCTCTGGTTCTTTCTTTGA+AGG - chr4_1:75891041-75891060 Msa0572880:three_prime_UTR 35.0%
! TCTTTCTTTGAAGGTGGATT+TGG - chr4_1:75891050-75891069 Msa0572880:three_prime_UTR 35.0%
! TGATGATGATGATGATGAGT+AGG - chr4_1:75891323-75891342 Msa0572880:CDS 35.0%
ATTCAAATAAGGTCGCAAAG+GGG + chr4_1:75891520-75891539 None:intergenic 35.0%
AATAAGTCATTGCTCTGCTT+TGG - chr4_1:75891537-75891556 Msa0572880:intron 35.0%
!! ATTTTGGGGATGGGAAATAT+AGG - chr4_1:75891578-75891597 Msa0572880:intron 35.0%
!! TTTTGGGGATGGGAAATATA+GGG - chr4_1:75891579-75891598 Msa0572880:intron 35.0%
ATGGGAAATATAGGGGAAAA+TGG - chr4_1:75891587-75891606 Msa0572880:intron 35.0%
CTCAAAAATTGTATTGGAGG+AGG + chr4_1:75891763-75891782 None:intergenic 35.0%
!!! TTTTTGAGTTCCCACAAATG+AGG - chr4_1:75891775-75891794 Msa0572880:intron 35.0%
GGAAAAAATAAAGGAGCAAG+TGG + chr4_1:75891868-75891887 None:intergenic 35.0%
CTGCACAAAGGAAAATCATT+AGG + chr4_1:75892447-75892466 None:intergenic 35.0%
TAGCATCCAGAAGAAAAACA+AGG - chr4_1:75892532-75892551 Msa0572880:intron 35.0%
ATCCAGAAGAAAAACAAGGA+AGG - chr4_1:75892536-75892555 Msa0572880:intron 35.0%
!!! ATCCTTTTTTTCAGAGCTAC+TGG + chr4_1:75892725-75892744 None:intergenic 35.0%
!! AGTAGCTCTGAAAAAAAGGA+TGG - chr4_1:75892724-75892743 Msa0572880:CDS 35.0%
ATGAACTGTTAGCGAAAGAA+TGG + chr4_1:75890835-75890854 None:intergenic 35.0%
! TGAAAGTGGGAAATTGATTC+AGG + chr4_1:75890978-75890997 None:intergenic 35.0%
!! TTCTCTGGTTCTTTCTTTGA+AGG - chr4_1:75891041-75891060 Msa0572880:three_prime_UTR 35.0%
! TCTTTCTTTGAAGGTGGATT+TGG - chr4_1:75891050-75891069 Msa0572880:three_prime_UTR 35.0%
! TGATGATGATGATGATGAGT+AGG - chr4_1:75891323-75891342 Msa0572880:CDS 35.0%
ATTCAAATAAGGTCGCAAAG+GGG + chr4_1:75891520-75891539 None:intergenic 35.0%
AATAAGTCATTGCTCTGCTT+TGG - chr4_1:75891537-75891556 Msa0572880:intron 35.0%
!! ATTTTGGGGATGGGAAATAT+AGG - chr4_1:75891578-75891597 Msa0572880:intron 35.0%
!! TTTTGGGGATGGGAAATATA+GGG - chr4_1:75891579-75891598 Msa0572880:intron 35.0%
ATGGGAAATATAGGGGAAAA+TGG - chr4_1:75891587-75891606 Msa0572880:intron 35.0%
CTCAAAAATTGTATTGGAGG+AGG + chr4_1:75891763-75891782 None:intergenic 35.0%
!!! TTTTTGAGTTCCCACAAATG+AGG - chr4_1:75891775-75891794 Msa0572880:intron 35.0%
GGAAAAAATAAAGGAGCAAG+TGG + chr4_1:75891868-75891887 None:intergenic 35.0%
CTGCACAAAGGAAAATCATT+AGG + chr4_1:75892447-75892466 None:intergenic 35.0%
TAGCATCCAGAAGAAAAACA+AGG - chr4_1:75892532-75892551 Msa0572880:intron 35.0%
ATCCAGAAGAAAAACAAGGA+AGG - chr4_1:75892536-75892555 Msa0572880:intron 35.0%
!!! ATCCTTTTTTTCAGAGCTAC+TGG + chr4_1:75892725-75892744 None:intergenic 35.0%
!! AGTAGCTCTGAAAAAAAGGA+TGG - chr4_1:75892724-75892743 Msa0572880:CDS 35.0%
GATTCAGGAAATGCACGAAA+TGG + chr4_1:75890963-75890982 None:intergenic 40.0%
TTTCCCACTTTCACCAAAAC+AGG - chr4_1:75890985-75891004 Msa0572880:three_prime_UTR 40.0%
!!! GTTCCTGTTTTGGTGAAAGT+GGG + chr4_1:75890991-75891010 None:intergenic 40.0%
!!! TGTTCCTGTTTTGGTGAAAG+TGG + chr4_1:75890992-75891011 None:intergenic 40.0%
! CGGAAAAGTTGTTCCTGTTT+TGG + chr4_1:75891001-75891020 None:intergenic 40.0%
!! TCTGGTTCTTTCTTTGAAGG+TGG - chr4_1:75891044-75891063 Msa0572880:three_prime_UTR 40.0%
! CTTTGAAGGTGGATTTGGTT+CGG - chr4_1:75891055-75891074 Msa0572880:three_prime_UTR 40.0%
! TTTGAAGGTGGATTTGGTTC+GGG - chr4_1:75891056-75891075 Msa0572880:three_prime_UTR 40.0%
ACTCAGACAGTACGAAACTA+TGG - chr4_1:75891151-75891170 Msa0572880:CDS 40.0%
TGAAAGAATGAAGGGAGACA+AGG + chr4_1:75891468-75891487 None:intergenic 40.0%
TTTGGGGATGGGAAATATAG+GGG - chr4_1:75891580-75891599 Msa0572880:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr4_1:75891755-75891774 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr4_1:75891756-75891775 None:intergenic 40.0%
ACAAAACCCTCCTCATTTGT+GGG + chr4_1:75891788-75891807 None:intergenic 40.0%
AACAAAACCCTCCTCATTTG+TGG + chr4_1:75891789-75891808 None:intergenic 40.0%
AAACTCGCAAACAAAGCCTA+GGG - chr4_1:75891913-75891932 Msa0572880:intron 40.0%
ACAAAGCCTAGGGAAAAGAA+TGG - chr4_1:75891923-75891942 Msa0572880:intron 40.0%
! AGTGTTCCATTCTTTTCCCT+AGG + chr4_1:75891932-75891951 None:intergenic 40.0%
TTCTGGATGCTATATGCTAG+TGG + chr4_1:75892524-75892543 None:intergenic 40.0%
!!! CTCCTTCCTTGTTTTTCTTC+TGG + chr4_1:75892541-75892560 None:intergenic 40.0%
AGGAGAAACCAACACGTATA+TGG - chr4_1:75892556-75892575 Msa0572880:intron 40.0%
GAAACCAACACGTATATGGA+CGG - chr4_1:75892560-75892579 Msa0572880:intron 40.0%
CGTCAATAGTGTTTGCTCAA+GGG + chr4_1:75892633-75892652 None:intergenic 40.0%
CCTTGAGCAAACACTATTGA+CGG - chr4_1:75892631-75892650 Msa0572880:CDS 40.0%
!! CTCCAGTAGCTCTGAAAAAA+AGG - chr4_1:75892720-75892739 Msa0572880:CDS 40.0%
TGAACAACCGAATGGCAAAT+TGG + chr4_1:75892922-75892941 None:intergenic 40.0%
GATTCAGGAAATGCACGAAA+TGG + chr4_1:75890963-75890982 None:intergenic 40.0%
TTTCCCACTTTCACCAAAAC+AGG - chr4_1:75890985-75891004 Msa0572880:three_prime_UTR 40.0%
!!! GTTCCTGTTTTGGTGAAAGT+GGG + chr4_1:75890991-75891010 None:intergenic 40.0%
!!! TGTTCCTGTTTTGGTGAAAG+TGG + chr4_1:75890992-75891011 None:intergenic 40.0%
! CGGAAAAGTTGTTCCTGTTT+TGG + chr4_1:75891001-75891020 None:intergenic 40.0%
!! TCTGGTTCTTTCTTTGAAGG+TGG - chr4_1:75891044-75891063 Msa0572880:three_prime_UTR 40.0%
! CTTTGAAGGTGGATTTGGTT+CGG - chr4_1:75891055-75891074 Msa0572880:three_prime_UTR 40.0%
! TTTGAAGGTGGATTTGGTTC+GGG - chr4_1:75891056-75891075 Msa0572880:three_prime_UTR 40.0%
ACTCAGACAGTACGAAACTA+TGG - chr4_1:75891151-75891170 Msa0572880:CDS 40.0%
TGAAAGAATGAAGGGAGACA+AGG + chr4_1:75891468-75891487 None:intergenic 40.0%
TTTGGGGATGGGAAATATAG+GGG - chr4_1:75891580-75891599 Msa0572880:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr4_1:75891755-75891774 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr4_1:75891756-75891775 None:intergenic 40.0%
ACAAAACCCTCCTCATTTGT+GGG + chr4_1:75891788-75891807 None:intergenic 40.0%
AACAAAACCCTCCTCATTTG+TGG + chr4_1:75891789-75891808 None:intergenic 40.0%
AAACTCGCAAACAAAGCCTA+GGG - chr4_1:75891913-75891932 Msa0572880:intron 40.0%
ACAAAGCCTAGGGAAAAGAA+TGG - chr4_1:75891923-75891942 Msa0572880:intron 40.0%
! AGTGTTCCATTCTTTTCCCT+AGG + chr4_1:75891932-75891951 None:intergenic 40.0%
TTCTGGATGCTATATGCTAG+TGG + chr4_1:75892524-75892543 None:intergenic 40.0%
!!! CTCCTTCCTTGTTTTTCTTC+TGG + chr4_1:75892541-75892560 None:intergenic 40.0%
AGGAGAAACCAACACGTATA+TGG - chr4_1:75892556-75892575 Msa0572880:intron 40.0%
GAAACCAACACGTATATGGA+CGG - chr4_1:75892560-75892579 Msa0572880:intron 40.0%
CGTCAATAGTGTTTGCTCAA+GGG + chr4_1:75892633-75892652 None:intergenic 40.0%
CCTTGAGCAAACACTATTGA+CGG - chr4_1:75892631-75892650 Msa0572880:CDS 40.0%
!! CTCCAGTAGCTCTGAAAAAA+AGG - chr4_1:75892720-75892739 Msa0572880:CDS 40.0%
TGAACAACCGAATGGCAAAT+TGG + chr4_1:75892922-75892941 None:intergenic 40.0%
! ACACAGCGCACTCAGTTTTT+GGG + chr4_1:75890766-75890785 None:intergenic 45.0%
!! CTTCTAAGCAGAAGCATCGA+TGG - chr4_1:75890869-75890888 Msa0572880:three_prime_UTR 45.0%
CGAAATGGAGAAGATGACTG+AGG + chr4_1:75890948-75890967 None:intergenic 45.0%
TCCGTTAAAGCAGAAACCCT+AGG - chr4_1:75891017-75891036 Msa0572880:three_prime_UTR 45.0%
GCCTAGGGTTTCTGCTTTAA+CGG + chr4_1:75891021-75891040 None:intergenic 45.0%
GAAAGAACCAGAGAAGCCTA+GGG + chr4_1:75891036-75891055 None:intergenic 45.0%
AGAAAGAACCAGAGAAGCCT+AGG + chr4_1:75891037-75891056 None:intergenic 45.0%
! TTTAAGGCCTGACATGTCTG+AGG - chr4_1:75891178-75891197 Msa0572880:CDS 45.0%
TTTGACCTCCTCGTACTTCT+GGG + chr4_1:75891222-75891241 None:intergenic 45.0%
ATTTGACCTCCTCGTACTTC+TGG + chr4_1:75891223-75891242 None:intergenic 45.0%
AAGTCATTGCTCTGCTTTGG+AGG - chr4_1:75891540-75891559 Msa0572880:intron 45.0%
! AGTCATTGCTCTGCTTTGGA+GGG - chr4_1:75891541-75891560 Msa0572880:intron 45.0%
!!! GGGTTTTGGGATGTTTTGGA+GGG + chr4_1:75891742-75891761 None:intergenic 45.0%
!!! AGGGTTTTGGGATGTTTTGG+AGG + chr4_1:75891743-75891762 None:intergenic 45.0%
!!! AGGAGGGTTTTGGGATGTTT+TGG + chr4_1:75891746-75891765 None:intergenic 45.0%
TTGAGTTCCCACAAATGAGG+AGG - chr4_1:75891778-75891797 Msa0572880:intron 45.0%
TGAGTTCCCACAAATGAGGA+GGG - chr4_1:75891779-75891798 Msa0572880:intron 45.0%
TAGAGAACAATGGAAGGGGA+GGG + chr4_1:75891839-75891858 None:intergenic 45.0%
ATAGAGAACAATGGAAGGGG+AGG + chr4_1:75891840-75891859 None:intergenic 45.0%
TTTGCGAGTTTGGAGGGAAA+GGG + chr4_1:75891904-75891923 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr4_1:75891910-75891929 None:intergenic 45.0%
!! CTAGGCTTTGTTTGCGAGTT+TGG + chr4_1:75891914-75891933 None:intergenic 45.0%
CAAACTCGCAAACAAAGCCT+AGG - chr4_1:75891912-75891931 Msa0572880:intron 45.0%
AGCAACAAGAAGCTGCACAA+AGG + chr4_1:75892459-75892478 None:intergenic 45.0%
TTTGTGCAGCTTCTTGTTGC+TGG - chr4_1:75892458-75892477 Msa0572880:intron 45.0%
TCGTGAAGTAGGTGAATAGG+AGG + chr4_1:75892592-75892611 None:intergenic 45.0%
GCTTCGTGAAGTAGGTGAAT+AGG + chr4_1:75892595-75892614 None:intergenic 45.0%
CAATAGTGTTTGCTCAAGGG+CGG + chr4_1:75892630-75892649 None:intergenic 45.0%
CCGTCAATAGTGTTTGCTCA+AGG + chr4_1:75892634-75892653 None:intergenic 45.0%
! ACACAGCGCACTCAGTTTTT+GGG + chr4_1:75890766-75890785 None:intergenic 45.0%
!! CTTCTAAGCAGAAGCATCGA+TGG - chr4_1:75890869-75890888 Msa0572880:three_prime_UTR 45.0%
CGAAATGGAGAAGATGACTG+AGG + chr4_1:75890948-75890967 None:intergenic 45.0%
TCCGTTAAAGCAGAAACCCT+AGG - chr4_1:75891017-75891036 Msa0572880:three_prime_UTR 45.0%
GCCTAGGGTTTCTGCTTTAA+CGG + chr4_1:75891021-75891040 None:intergenic 45.0%
GAAAGAACCAGAGAAGCCTA+GGG + chr4_1:75891036-75891055 None:intergenic 45.0%
AGAAAGAACCAGAGAAGCCT+AGG + chr4_1:75891037-75891056 None:intergenic 45.0%
! TTTAAGGCCTGACATGTCTG+AGG - chr4_1:75891178-75891197 Msa0572880:CDS 45.0%
TTTGACCTCCTCGTACTTCT+GGG + chr4_1:75891222-75891241 None:intergenic 45.0%
ATTTGACCTCCTCGTACTTC+TGG + chr4_1:75891223-75891242 None:intergenic 45.0%
AAGTCATTGCTCTGCTTTGG+AGG - chr4_1:75891540-75891559 Msa0572880:intron 45.0%
! AGTCATTGCTCTGCTTTGGA+GGG - chr4_1:75891541-75891560 Msa0572880:intron 45.0%
!!! GGGTTTTGGGATGTTTTGGA+GGG + chr4_1:75891742-75891761 None:intergenic 45.0%
!!! AGGGTTTTGGGATGTTTTGG+AGG + chr4_1:75891743-75891762 None:intergenic 45.0%
!!! AGGAGGGTTTTGGGATGTTT+TGG + chr4_1:75891746-75891765 None:intergenic 45.0%
TTGAGTTCCCACAAATGAGG+AGG - chr4_1:75891778-75891797 Msa0572880:intron 45.0%
TGAGTTCCCACAAATGAGGA+GGG - chr4_1:75891779-75891798 Msa0572880:intron 45.0%
TAGAGAACAATGGAAGGGGA+GGG + chr4_1:75891839-75891858 None:intergenic 45.0%
ATAGAGAACAATGGAAGGGG+AGG + chr4_1:75891840-75891859 None:intergenic 45.0%
TTTGCGAGTTTGGAGGGAAA+GGG + chr4_1:75891904-75891923 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr4_1:75891910-75891929 None:intergenic 45.0%
!! CTAGGCTTTGTTTGCGAGTT+TGG + chr4_1:75891914-75891933 None:intergenic 45.0%
CAAACTCGCAAACAAAGCCT+AGG - chr4_1:75891912-75891931 Msa0572880:intron 45.0%
AGCAACAAGAAGCTGCACAA+AGG + chr4_1:75892459-75892478 None:intergenic 45.0%
TTTGTGCAGCTTCTTGTTGC+TGG - chr4_1:75892458-75892477 Msa0572880:intron 45.0%
TCGTGAAGTAGGTGAATAGG+AGG + chr4_1:75892592-75892611 None:intergenic 45.0%
GCTTCGTGAAGTAGGTGAAT+AGG + chr4_1:75892595-75892614 None:intergenic 45.0%
CAATAGTGTTTGCTCAAGGG+CGG + chr4_1:75892630-75892649 None:intergenic 45.0%
CCGTCAATAGTGTTTGCTCA+AGG + chr4_1:75892634-75892653 None:intergenic 45.0%
! CACACAGCGCACTCAGTTTT+TGG + chr4_1:75890767-75890786 None:intergenic 50.0%
!! ATTTGGTTCGGGTGATGACC+CGG - chr4_1:75891067-75891086 Msa0572880:three_prime_UTR 50.0%
GTTTCGTACTGTCTGAGTCC+AGG + chr4_1:75891149-75891168 None:intergenic 50.0%
!! GTCATTGCTCTGCTTTGGAG+GGG - chr4_1:75891542-75891561 Msa0572880:intron 50.0%
!! GAAGGGAGGATTTTGGGGAT+GGG - chr4_1:75891569-75891588 Msa0572880:intron 50.0%
AATGGAAGGGGAGGGATTTG+GGG + chr4_1:75891831-75891850 None:intergenic 50.0%
CAATGGAAGGGGAGGGATTT+GGG + chr4_1:75891832-75891851 None:intergenic 50.0%
ACAATGGAAGGGGAGGGATT+TGG + chr4_1:75891833-75891852 None:intergenic 50.0%
GTTTGCGAGTTTGGAGGGAA+AGG + chr4_1:75891905-75891924 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr4_1:75891911-75891930 None:intergenic 50.0%
TGGAGGTGGCATGTATGTAG+AGG - chr4_1:75892478-75892497 Msa0572880:intron 50.0%
GATGCCGTCCATATACGTGT+TGG + chr4_1:75892567-75892586 None:intergenic 50.0%
TGTTTGCTCAAGGGCGGTTA+TGG + chr4_1:75892624-75892643 None:intergenic 50.0%
! CACACAGCGCACTCAGTTTT+TGG + chr4_1:75890767-75890786 None:intergenic 50.0%
!! ATTTGGTTCGGGTGATGACC+CGG - chr4_1:75891067-75891086 Msa0572880:three_prime_UTR 50.0%
GTTTCGTACTGTCTGAGTCC+AGG + chr4_1:75891149-75891168 None:intergenic 50.0%
!! GTCATTGCTCTGCTTTGGAG+GGG - chr4_1:75891542-75891561 Msa0572880:intron 50.0%
!! GAAGGGAGGATTTTGGGGAT+GGG - chr4_1:75891569-75891588 Msa0572880:intron 50.0%
AATGGAAGGGGAGGGATTTG+GGG + chr4_1:75891831-75891850 None:intergenic 50.0%
CAATGGAAGGGGAGGGATTT+GGG + chr4_1:75891832-75891851 None:intergenic 50.0%
ACAATGGAAGGGGAGGGATT+TGG + chr4_1:75891833-75891852 None:intergenic 50.0%
GTTTGCGAGTTTGGAGGGAA+AGG + chr4_1:75891905-75891924 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr4_1:75891911-75891930 None:intergenic 50.0%
TGGAGGTGGCATGTATGTAG+AGG - chr4_1:75892478-75892497 Msa0572880:intron 50.0%
GATGCCGTCCATATACGTGT+TGG + chr4_1:75892567-75892586 None:intergenic 50.0%
TGTTTGCTCAAGGGCGGTTA+TGG + chr4_1:75892624-75892643 None:intergenic 50.0%
GCAGAAACCCTAGGCTTCTC+TGG - chr4_1:75891026-75891045 Msa0572880:three_prime_UTR 55.0%
AACCCGGTTCCAGGAGTAAC+CGG + chr4_1:75891089-75891108 None:intergenic 55.0%
CTCTTCCACAGCAGTGAACC+CGG + chr4_1:75891105-75891124 None:intergenic 55.0%
GAAGAACCGCAATGTCCACC+TGG - chr4_1:75891128-75891147 Msa0572880:CDS 55.0%
CTGAGTCCAGGTGGACATTG+CGG + chr4_1:75891137-75891156 None:intergenic 55.0%
TCGTACTGTCTGAGTCCAGG+TGG + chr4_1:75891146-75891165 None:intergenic 55.0%
CGCTCATCCTCAGACATGTC+AGG + chr4_1:75891188-75891207 None:intergenic 55.0%
! TGCACTCACCCAGAAGTACG+AGG - chr4_1:75891211-75891230 Msa0572880:CDS 55.0%
! ACTCACCCAGAAGTACGAGG+AGG - chr4_1:75891214-75891233 Msa0572880:CDS 55.0%
!! ATTGCTCTGCTTTGGAGGGG+AGG - chr4_1:75891545-75891564 Msa0572880:intron 55.0%
!! TTGCTCTGCTTTGGAGGGGA+GGG - chr4_1:75891546-75891565 Msa0572880:intron 55.0%
! GGAGGGGAAGGGAGGATTTT+GGG - chr4_1:75891563-75891582 Msa0572880:intron 55.0%
! GAGGGGAAGGGAGGATTTTG+GGG - chr4_1:75891564-75891583 Msa0572880:intron 55.0%
!! GGAAGGGAGGATTTTGGGGA+TGG - chr4_1:75891568-75891587 Msa0572880:intron 55.0%
ATGGAAGGGGAGGGATTTGG+GGG + chr4_1:75891830-75891849 None:intergenic 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr4_1:75891899-75891918 None:intergenic 55.0%
CGAGTTTGGAGGGAAAGGGA+GGG + chr4_1:75891900-75891919 None:intergenic 55.0%
GTGCAGCTTCTTGTTGCTGG+AGG - chr4_1:75892461-75892480 Msa0572880:intron 55.0%
CAGCTTCTTGTTGCTGGAGG+TGG - chr4_1:75892464-75892483 Msa0572880:intron 55.0%
GGACTCAGGCTTCGTGAAGT+AGG + chr4_1:75892603-75892622 None:intergenic 55.0%
TCAAGGGCGGTTATGGACTC+AGG + chr4_1:75892617-75892636 None:intergenic 55.0%
GCAGAAACCCTAGGCTTCTC+TGG - chr4_1:75891026-75891045 Msa0572880:three_prime_UTR 55.0%
AACCCGGTTCCAGGAGTAAC+CGG + chr4_1:75891089-75891108 None:intergenic 55.0%
CTCTTCCACAGCAGTGAACC+CGG + chr4_1:75891105-75891124 None:intergenic 55.0%
GAAGAACCGCAATGTCCACC+TGG - chr4_1:75891128-75891147 Msa0572880:CDS 55.0%
CTGAGTCCAGGTGGACATTG+CGG + chr4_1:75891137-75891156 None:intergenic 55.0%
TCGTACTGTCTGAGTCCAGG+TGG + chr4_1:75891146-75891165 None:intergenic 55.0%
CGCTCATCCTCAGACATGTC+AGG + chr4_1:75891188-75891207 None:intergenic 55.0%
! TGCACTCACCCAGAAGTACG+AGG - chr4_1:75891211-75891230 Msa0572880:CDS 55.0%
! ACTCACCCAGAAGTACGAGG+AGG - chr4_1:75891214-75891233 Msa0572880:CDS 55.0%
!! ATTGCTCTGCTTTGGAGGGG+AGG - chr4_1:75891545-75891564 Msa0572880:intron 55.0%
!! TTGCTCTGCTTTGGAGGGGA+GGG - chr4_1:75891546-75891565 Msa0572880:intron 55.0%
! GGAGGGGAAGGGAGGATTTT+GGG - chr4_1:75891563-75891582 Msa0572880:intron 55.0%
! GAGGGGAAGGGAGGATTTTG+GGG - chr4_1:75891564-75891583 Msa0572880:intron 55.0%
!! GGAAGGGAGGATTTTGGGGA+TGG - chr4_1:75891568-75891587 Msa0572880:intron 55.0%
ATGGAAGGGGAGGGATTTGG+GGG + chr4_1:75891830-75891849 None:intergenic 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr4_1:75891899-75891918 None:intergenic 55.0%
CGAGTTTGGAGGGAAAGGGA+GGG + chr4_1:75891900-75891919 None:intergenic 55.0%
GTGCAGCTTCTTGTTGCTGG+AGG - chr4_1:75892461-75892480 Msa0572880:intron 55.0%
CAGCTTCTTGTTGCTGGAGG+TGG - chr4_1:75892464-75892483 Msa0572880:intron 55.0%
GGACTCAGGCTTCGTGAAGT+AGG + chr4_1:75892603-75892622 None:intergenic 55.0%
TCAAGGGCGGTTATGGACTC+AGG + chr4_1:75892617-75892636 None:intergenic 55.0%
GCTGTGTGCACGCACTGAGT+TGG - chr4_1:75890779-75890798 Msa0572880:three_prime_UTR 60.0%
GGTGATGACCCGGTTACTCC+TGG - chr4_1:75891077-75891096 Msa0572880:three_prime_UTR 60.0%
GACCCGGTTACTCCTGGAAC+CGG - chr4_1:75891083-75891102 Msa0572880:three_prime_UTR 60.0%
ACCCGGTTACTCCTGGAACC+GGG - chr4_1:75891084-75891103 Msa0572880:three_prime_UTR 60.0%
ACCCGGTTCCAGGAGTAACC+GGG + chr4_1:75891088-75891107 None:intergenic 60.0%
ACAGCAGTGAACCCGGTTCC+AGG + chr4_1:75891098-75891117 None:intergenic 60.0%
TGGAACCGGGTTCACTGCTG+TGG - chr4_1:75891097-75891116 Msa0572880:exon 60.0%
!! TGCTCTGCTTTGGAGGGGAG+GGG - chr4_1:75891547-75891566 Msa0572880:intron 60.0%
!! TGCTTTGGAGGGGAGGGGAA+GGG - chr4_1:75891552-75891571 Msa0572880:intron 60.0%
! GGGAGGGGAAGGGAGGATTT+TGG - chr4_1:75891562-75891581 Msa0572880:intron 60.0%
TGGAAGGGGAGGGATTTGGG+GGG + chr4_1:75891829-75891848 None:intergenic 60.0%
! GGAAAGGGAGGGGAGGGTTT+TGG + chr4_1:75891889-75891908 None:intergenic 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr4_1:75891895-75891914 None:intergenic 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr4_1:75891896-75891915 None:intergenic 60.0%
GCGAGTTTGGAGGGAAAGGG+AGG + chr4_1:75891901-75891920 None:intergenic 60.0%
GCTGTGTGCACGCACTGAGT+TGG - chr4_1:75890779-75890798 Msa0572880:three_prime_UTR 60.0%
GGTGATGACCCGGTTACTCC+TGG - chr4_1:75891077-75891096 Msa0572880:three_prime_UTR 60.0%
GACCCGGTTACTCCTGGAAC+CGG - chr4_1:75891083-75891102 Msa0572880:three_prime_UTR 60.0%
ACCCGGTTACTCCTGGAACC+GGG - chr4_1:75891084-75891103 Msa0572880:three_prime_UTR 60.0%
ACCCGGTTCCAGGAGTAACC+GGG + chr4_1:75891088-75891107 None:intergenic 60.0%
ACAGCAGTGAACCCGGTTCC+AGG + chr4_1:75891098-75891117 None:intergenic 60.0%
TGGAACCGGGTTCACTGCTG+TGG - chr4_1:75891097-75891116 Msa0572880:exon 60.0%
!! TGCTCTGCTTTGGAGGGGAG+GGG - chr4_1:75891547-75891566 Msa0572880:intron 60.0%
!! TGCTTTGGAGGGGAGGGGAA+GGG - chr4_1:75891552-75891571 Msa0572880:intron 60.0%
! GGGAGGGGAAGGGAGGATTT+TGG - chr4_1:75891562-75891581 Msa0572880:intron 60.0%
TGGAAGGGGAGGGATTTGGG+GGG + chr4_1:75891829-75891848 None:intergenic 60.0%
! GGAAAGGGAGGGGAGGGTTT+TGG + chr4_1:75891889-75891908 None:intergenic 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr4_1:75891895-75891914 None:intergenic 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr4_1:75891896-75891915 None:intergenic 60.0%
GCGAGTTTGGAGGGAAAGGG+AGG + chr4_1:75891901-75891920 None:intergenic 60.0%
!! CTGCTTTGGAGGGGAGGGGA+AGG - chr4_1:75891551-75891570 Msa0572880:intron 65.0%
TTTGGAGGGGAGGGGAAGGG+AGG - chr4_1:75891555-75891574 Msa0572880:intron 65.0%
!! CTGCTTTGGAGGGGAGGGGA+AGG - chr4_1:75891551-75891570 Msa0572880:intron 65.0%
TTTGGAGGGGAGGGGAAGGG+AGG - chr4_1:75891555-75891574 Msa0572880:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75890748 75893067 75890748 ID=Msa0572880;Name=Msa0572880
chr4_1 mRNA 75890748 75893067 75890748 ID=Msa0572880-mRNA-1;Parent=Msa0572880;Name=Msa0572880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=140|1|1|1|1|1|2|361|195
chr4_1 exon 75890748 75891348 75890748 ID=Msa0572880-mRNA-1:exon:26369;Parent=Msa0572880-mRNA-1
chr4_1 exon 75892580 75893067 75892580 ID=Msa0572880-mRNA-1:exon:26368;Parent=Msa0572880-mRNA-1
chr4_1 five_prime_UTR 75892928 75893067 75892928 ID=Msa0572880-mRNA-1:five_prime_utr;Parent=Msa0572880-mRNA-1
chr4_1 CDS 75892580 75892927 75892580 ID=Msa0572880-mRNA-1:cds;Parent=Msa0572880-mRNA-1
chr4_1 CDS 75891109 75891348 75891109 ID=Msa0572880-mRNA-1:cds;Parent=Msa0572880-mRNA-1
chr4_1 three_prime_UTR 75890748 75891108 75890748 ID=Msa0572880-mRNA-1:three_prime_utr;Parent=Msa0572880-mRNA-1
Gene Sequence

>Msa0572880

ATGGCATCCTCTTTACTCAATTCAATTCCACTTTCATCTTCTTCTTTTCTTTGCGCTCCTCAGTCATCTTCTCCATTTCGTGCATTTCCTGAATCAATTTCCCACTTTCACCAAAACAGGAACAACTTTTCCGTTAAAGCAGAAACCCTAGGCTTCTCTGGTTCTTTCTTTGAAGGTGGATTTGGTTCGGGTGATGACCCGGTTACTCCTGGAACCGGGTTCACTGCTGTGGAAGAGAAAGAAGAACCGCAATGTCCACCTGGACTCAGACAGTACGAAACTATGGTTGTTTTAAGGCCTGACATGTCTGAGGATGAGCGTCTTGCACTCACCCAGAAGTACGAGGAGCTTCTTGTTGCTGGAGGTGGCATGTATGTAGAGGTTTTTAACAGAGGTGTTATTCCACTAGCATATAGCATCCAGAAGAAAAACAAGGAAGGAGAAACCAACACGTATATGGACGGCATCTACCTCCTATTCACCTACTTCACGAAGCCTGAGTCCATAACCGCCCTTGAGCAAACACTATTGACGGATGATAATGTTATCCGATCAACAAGCTTCAAAATCAGAAAAAGGAAATATTAG

Protein sequence

>Msa0572880

MASSLLNSIPLSSSSFLCAPQSSSPFRAFPESISHFHQNRNNFSVKAETLGFSGSFFEGGFGSGDDPVTPGTGFTAVEEKEEPQCPPGLRQYETMVVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIQKKNKEGETNTYMDGIYLLFTYFTKPESITALEQTLLTDDNVIRSTSFKIRKRKY*