AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037780 MtrunA17_Chr1g0212481 96.000 600 22 1 1 598 1 600 0.0 1204
Msa0037780 MtrunA17_Chr1g0152521 74.790 357 31 4 1 347 1 308 0.0 525
Msa0037780 MtrunA17_Chr1g0152511 78.715 249 6 2 350 598 1 202 1.06e-130 381
Msa0037780 MtrunA17_Chr4g0039621 26.930 583 339 23 57 572 19 581 3.47e-47 177
Msa0037780 MtrunA17_Chr4g0068571 27.294 425 257 17 175 565 37 443 8.39e-23 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037780 AT3G55400.1 73.884 605 141 3 1 588 1 605 0.0 927
Msa0037780 AT3G55400.2 75.534 515 111 2 1 500 1 515 0.0 814
Msa0037780 AT4G13780.1 25.874 572 345 19 57 567 20 573 2.04e-46 175

Find 196 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGGCCGTATACCATTT+TGG 0.163191 1_1:-66959552 None:intergenic
CGACGCCATTGCTCGCTTTC+AGG 0.172482 1_1:+66956530 Msa0037780:CDS
AACGATTTGGTTAGTAAGTT+TGG 0.200559 1_1:+66960858 Msa0037780:CDS
GAGATGGAAATAGGGTTTAT+TGG 0.220234 1_1:-66956370 None:intergenic
TTCCTCAGAGAGGTGGAATT+TGG 0.232008 1_1:+66960903 Msa0037780:CDS
AGAAGAAGGGAGATGGAAAT+AGG 0.249938 1_1:-66956379 None:intergenic
TGGCAGGAAATCTTCTTAAT+AGG 0.253659 1_1:+66961135 Msa0037780:intron
TACGTTTCCATGCCGTTTAT+TGG 0.277442 1_1:+66959495 Msa0037780:CDS
TTTAATTTGATAGCGGCTAT+TGG 0.277602 1_1:+66956644 Msa0037780:intron
GAATAAGCTGGATGCATCTA+AGG 0.278513 1_1:+66956193 Msa0037780:five_prime_UTR
AAAGATGGCTGCACAAAGTT+TGG 0.304459 1_1:-66957771 None:intergenic
TTCCCGAGCATCCGTTGATT+GGG 0.310196 1_1:+66958561 Msa0037780:CDS
GTATGGTTTGATGCTTTACT+AGG 0.314469 1_1:+66958622 Msa0037780:CDS
TACGCTTGAACCAAACGATT+TGG 0.323345 1_1:+66960845 Msa0037780:CDS
TTACACAAATATTTATATAT+AGG 0.325314 1_1:+66962775 Msa0037780:three_prime_UTR
ATCAGCTTGTGAGGCTGTTC+TGG 0.327249 1_1:+66961794 Msa0037780:CDS
TACCAAGTGGGGTGGACTTA+AGG 0.328656 1_1:+66962513 Msa0037780:CDS
GAAACGGTGTTTAGTAAATC+AGG 0.339575 1_1:-66958968 None:intergenic
CCCAGGTTGCTGCTTCAAAT+TGG 0.340068 1_1:-66962410 None:intergenic
TTTCCCGAGCATCCGTTGAT+TGG 0.340690 1_1:+66958560 Msa0037780:CDS
TGGGCTAAGCCTTCCCAAAA+TGG 0.344820 1_1:+66959538 Msa0037780:CDS
CGTTAACGCCCCTCCTCATA+TGG 0.346271 1_1:+66956482 Msa0037780:CDS
TCTTTCCCGCAGATAACATT+AGG 0.357272 1_1:-66956240 None:intergenic
ATGCACAGCTTGGCTATTCC+AGG 0.357457 1_1:+66962385 Msa0037780:CDS
CCAGCTATGCTAATGTCTGC+TGG 0.359184 1_1:+66959518 Msa0037780:CDS
GAACTCAAGCTCGGAGTAAC+AGG 0.361149 1_1:-66962354 None:intergenic
ACCTTAAGCCTTGTGTTTCA+AGG 0.361855 1_1:+66957679 Msa0037780:CDS
ACGATTTGGTTAGTAAGTTT+GGG 0.362204 1_1:+66960859 Msa0037780:CDS
TTACTAAACACCGTTTCTTC+AGG 0.362225 1_1:+66958974 Msa0037780:CDS
TCCTTGAAACACAAGGCTTA+AGG 0.367680 1_1:-66957680 None:intergenic
CCAGCTACACTGCACTTGAT+TGG 0.385424 1_1:+66959001 Msa0037780:CDS
TTAATTTGATAGCGGCTATT+GGG 0.387680 1_1:+66956645 Msa0037780:intron
ACCAAGTGGGGTGGACTTAA+GGG 0.391465 1_1:+66962514 Msa0037780:CDS
CACAAGCTTACAAGACGCTT+TGG 0.398442 1_1:+66956772 Msa0037780:CDS
GAGGTGGAATTTGGCAATGA+TGG 0.400433 1_1:+66960912 Msa0037780:CDS
GAAGAAGGGAGATGGAAATA+GGG 0.400944 1_1:-66956378 None:intergenic
ATCAACGGATGCTCGGGAAA+TGG 0.401014 1_1:-66958557 None:intergenic
GTTGAGGTTGAGCCATGGCC+TGG 0.404063 1_1:-66962540 None:intergenic
AACTTACTAACCAAATCGTT+TGG 0.404070 1_1:-66960855 None:intergenic
AAGAAAGTTATATTCATTAC+CGG 0.407015 1_1:+66956669 Msa0037780:CDS
TAATGCTGGTAATTCCTATA+TGG 0.408560 1_1:+66961824 Msa0037780:CDS
TGTGAGGCTGTTCTGGAGAT+TGG 0.410328 1_1:+66961801 Msa0037780:CDS
AGCCTTCCCAAAATGGTATA+CGG 0.411499 1_1:+66959545 Msa0037780:CDS
CAGCCTCACAAGCTGATGTC+AGG 0.412097 1_1:-66961788 None:intergenic
AATAGGGTTTATTGGATTTG+AGG 0.414097 1_1:-66956362 None:intergenic
AGCAATGGCGTCGGCGGCGA+TGG 0.415306 1_1:-66956520 None:intergenic
CCAATCAAGTGCAGTGTAGC+TGG 0.425417 1_1:-66959001 None:intergenic
TGTCAGCTGTGAGGAATATA+AGG 0.426210 1_1:+66957354 Msa0037780:CDS
CATTTACCGAGCTGATTATG+AGG 0.426407 1_1:+66957321 Msa0037780:CDS
TTGCAGAACAGAGCTGGTCT+TGG 0.428986 1_1:-66956402 None:intergenic
ATTCCTTTACCTCGTGTAAA+CGG 0.431671 1_1:-66957794 None:intergenic
GCACATCTTGCCAATACAAT+TGG 0.438695 1_1:+66960972 Msa0037780:CDS
TTCGTCATCATTTGAGGAAG+TGG 0.439070 1_1:-66956430 None:intergenic
CTCACCATGTTCATCGGTGC+CGG 0.442498 1_1:-66956688 None:intergenic
AGAGCTGGTCTTGGAGAAGA+AGG 0.442571 1_1:-66956393 None:intergenic
ACCAATTTGAAGCAGCAACC+TGG 0.444665 1_1:+66962409 Msa0037780:CDS
GCTCAAAGTACCAATTGTAT+TGG 0.446015 1_1:-66960982 None:intergenic
GCCCCAATCAACGGATGCTC+GGG 0.451436 1_1:-66958563 None:intergenic
ACTTAAGGGTGGCCAGGCCA+TGG 0.453301 1_1:+66962528 Msa0037780:CDS
TGAGTCTTGTCACTCGGAAC+AGG 0.454916 1_1:-66958589 None:intergenic
AAACAAGCTCAAGAAGTTGT+TGG 0.459841 1_1:+66962652 Msa0037780:CDS
AGGGGCACGCTCATCCATAT+AGG 0.466606 1_1:-66961838 None:intergenic
TGCTGCTTCAAATTGGTCCC+TGG 0.467272 1_1:-66962403 None:intergenic
CCTCAGGCCACTATTGATCC+AGG 0.467562 1_1:-66958527 None:intergenic
AAACTGAAGTGGAAGACAAA+GGG 0.469002 1_1:+66962587 Msa0037780:CDS
AAGAAGACTCTGAAAAGTAA+AGG 0.472328 1_1:+66962622 Msa0037780:CDS
TAGCATAGCTGGCCAATAAA+CGG 0.473012 1_1:-66959507 None:intergenic
CCAGCAGACATTAGCATAGC+TGG 0.474341 1_1:-66959518 None:intergenic
GTCAAAATATCAGAAGTCAT+TGG 0.475950 1_1:+66957728 Msa0037780:CDS
TGCCCCAATCAACGGATGCT+CGG 0.476088 1_1:-66958564 None:intergenic
TGTTATCTGCGGGAAAGAAA+CGG 0.478038 1_1:+66956245 Msa0037780:five_prime_UTR
GGATTTGAGGTGAGAAACAT+TGG 0.479677 1_1:-66956349 None:intergenic
AGAAGACTCTGAAAAGTAAA+GGG 0.482397 1_1:+66962623 Msa0037780:CDS
GCCTTGTGTTTCAAGGAAAG+AGG 0.485059 1_1:+66957686 Msa0037780:CDS
ATGTTAGGATGGTATGAAGA+TGG 0.485616 1_1:+66960806 Msa0037780:intron
AGGTGGAATTTGGCAATGAT+GGG 0.485834 1_1:+66960913 Msa0037780:CDS
AGGAACATAGTACATATGTA+TGG 0.486000 1_1:+66962795 Msa0037780:three_prime_UTR
CTCCCTGACATCAGCTTGTG+AGG 0.486304 1_1:+66961785 Msa0037780:CDS
TTAGTAAATCAGGTTGCTCC+TGG 0.489812 1_1:-66958958 None:intergenic
GAGTAAGCGCTGCCCATATG+AGG 0.492891 1_1:-66956495 None:intergenic
CAAGGACAATGTAGCGAGGC+TGG 0.493628 1_1:+66961235 Msa0037780:CDS
ATTGGAACGAAGTGAAAGAA+TGG 0.493740 1_1:-66956331 None:intergenic
GGGTGGACTTAAGGGTGGCC+AGG 0.494372 1_1:+66962522 Msa0037780:CDS
ATCCTAGCAAAGATTGGTTG+AGG 0.496658 1_1:-66962556 None:intergenic
GGCTCAAGGTTCCACCCCTA+CGG 0.496674 1_1:+66956731 Msa0037780:CDS
TGCAGAAGGAAATGCATTCA+AGG 0.496773 1_1:+66961217 Msa0037780:CDS
TGTTAGGATGGTATGAAGAT+GGG 0.497162 1_1:+66960807 Msa0037780:intron
AATCCACTGCCAGTGTTGAT+TGG 0.502097 1_1:-66961184 None:intergenic
GTAGGGTTCGTCATCATTTG+AGG 0.505930 1_1:-66956436 None:intergenic
AAAAGACCATCTGAATAAGC+TGG 0.507148 1_1:+66956181 None:intergenic
CTGCCAATCAACACTGGCAG+TGG 0.507171 1_1:+66961181 Msa0037780:CDS
GCAACTGCTGCCGTGGCTCA+AGG 0.510640 1_1:+66956717 Msa0037780:CDS
ACCCTTAAGTCCACCCCACT+TGG 0.511818 1_1:-66962515 None:intergenic
AGACTCAGACTATATATGTA+TGG 0.517740 1_1:+66958605 Msa0037780:CDS
CTATTTGATGCAGGATGAGA+AGG 0.520213 1_1:+66957626 Msa0037780:intron
TGAGATTGCAATGGTCCGTA+GGG 0.524472 1_1:-66956746 None:intergenic
AGCTGGCCAACCTGAAGAAA+CGG 0.524943 1_1:-66958984 None:intergenic
TATGGTTTGATGCTTTACTA+GGG 0.525816 1_1:+66958623 Msa0037780:CDS
TAAACACCGTTTCTTCAGGT+TGG 0.526746 1_1:+66958978 Msa0037780:CDS
AATCTTCTTAATAGGACTCT+AGG 0.528211 1_1:+66961143 Msa0037780:CDS
GTTCAAACCTGGATCAATAG+TGG 0.530179 1_1:+66958520 Msa0037780:CDS
CCTTGGTCTCTCTTTAAGCA+AGG 0.530338 1_1:+66961858 Msa0037780:CDS
CAGCTATGCTAATGTCTGCT+GGG 0.530697 1_1:+66959519 Msa0037780:CDS
GTTCTGGAGATTGGTAATGC+TGG 0.538081 1_1:+66961810 Msa0037780:CDS
AATGGCGTCGGCGGCGATGG+TGG 0.539434 1_1:-66956517 None:intergenic
GAGCATTTGCAGAACAGAGC+TGG 0.542714 1_1:-66956408 None:intergenic
CCCAAAATGGTATACGGCCA+TGG 0.542751 1_1:+66959551 Msa0037780:CDS
GATTCCACGGTGGCTGCAGA+AGG 0.543559 1_1:+66961203 Msa0037780:CDS
TGCTTCTGAAGCAGCTGCCA+AGG 0.545752 1_1:+66961887 Msa0037780:CDS
TCCCGAGCATCCGTTGATTG+GGG 0.545821 1_1:+66958562 Msa0037780:CDS
GTCTTGGAGAAGAAGGGAGA+TGG 0.547721 1_1:-66956386 None:intergenic
ATGAAGATGGGCAAGTCACT+AGG 0.550900 1_1:+66960819 Msa0037780:CDS
ATATGGATGAGCGTGCCCCT+TGG 0.551543 1_1:+66961841 Msa0037780:CDS
AGCTCGGTAAATGTCACCAT+TGG 0.558279 1_1:-66957311 None:intergenic
CTGTCTCTAATATAATTACA+AGG 0.560785 1_1:-66962305 None:intergenic
ATGAGATTGCAATGGTCCGT+AGG 0.561506 1_1:-66956747 None:intergenic
TATTCGAGAGTGCTTGCCAA+TGG 0.562606 1_1:+66957295 Msa0037780:CDS
AACAGGTATGCCCCAATCAA+CGG 0.565056 1_1:-66958572 None:intergenic
ACCTCGTGTAAACGGAAAGA+TGG 0.565307 1_1:-66957786 None:intergenic
AACCTCAACCAATCTTTGCT+AGG 0.565548 1_1:+66962554 Msa0037780:CDS
ATCAGCACTAGCTGATGACC+AGG 0.568431 1_1:+66958940 Msa0037780:CDS
ATACTTCTTCCTCAGAGAGG+TGG 0.569549 1_1:+66960896 Msa0037780:CDS
AAAGCGAGCAATGGCGTCGG+CGG 0.570755 1_1:-66956526 None:intergenic
ATTGCAATGGTCCGTAGGGG+TGG 0.570970 1_1:-66956742 None:intergenic
CCAATTTGAAGCAGCAACCT+GGG 0.571584 1_1:+66962410 Msa0037780:CDS
GATTGAAAATCAAACTGAAG+TGG 0.574353 1_1:+66962576 Msa0037780:CDS
TCCTCTTTCCTTGAAACACA+AGG 0.575285 1_1:-66957687 None:intergenic
GGGGCGTTAACGTAGTAAAG+AGG 0.576539 1_1:-66956471 None:intergenic
TAAATTTCTAGGTTCAAACC+TGG 0.577775 1_1:+66958509 Msa0037780:intron
TGCTTCCTAATGTTATCTGC+GGG 0.578122 1_1:+66956235 Msa0037780:five_prime_UTR
TTGAAACACAAGGCTTAAGG+TGG 0.578255 1_1:-66957677 None:intergenic
TACACTGCACTTGATTGGTA+AGG 0.579282 1_1:+66959006 Msa0037780:CDS
TATATTCTCGAACTCAAGCT+CGG 0.581656 1_1:-66962363 None:intergenic
AAGAGGGGTTGTGATGACGT+AGG 0.584740 1_1:-66956454 None:intergenic
AGCGCTGCCCATATGAGGAG+GGG 0.586186 1_1:-66956490 None:intergenic
TAACATTAGGAAGCACACAC+AGG 0.586959 1_1:-66956227 None:intergenic
GTTAACGCCCCTCCTCATAT+GGG 0.587213 1_1:+66956483 Msa0037780:CDS
AAAATATCAGAAGTCATTGG+AGG 0.587646 1_1:+66957731 Msa0037780:CDS
GGGCGTTAACGTAGTAAAGA+GGG 0.589775 1_1:-66956470 None:intergenic
AATAAGCTGGATGCATCTAA+GGG 0.591429 1_1:+66956194 Msa0037780:five_prime_UTR
GGGAAATGGAAAAGTCCCTC+AGG 0.591961 1_1:-66958543 None:intergenic
GAAAATTGCAACTGCTGCCG+TGG 0.592158 1_1:+66956710 Msa0037780:CDS
ATACCTTCGTCAAGAATCCA+TGG 0.594060 1_1:-66959568 None:intergenic
AGCCTCACAAGCTGATGTCA+GGG 0.594895 1_1:-66961787 None:intergenic
AACATTAGGAAGCACACACA+GGG 0.595670 1_1:-66956226 None:intergenic
TCGAGAATATATGCACAGCT+TGG 0.599510 1_1:+66962375 Msa0037780:CDS
TAGCTGGCCAATAAACGGCA+TGG 0.600474 1_1:-66959502 None:intergenic
ACACAAGGCTTAAGGTGGAT+CGG 0.602973 1_1:-66957672 None:intergenic
CAAACTGAAGTGGAAGACAA+AGG 0.603151 1_1:+66962586 Msa0037780:CDS
ATTTACCGAGCTGATTATGA+GGG 0.603837 1_1:+66957322 Msa0037780:CDS
CCTTGCTTAAAGAGAGACCA+AGG 0.604022 1_1:-66961858 None:intergenic
AAAGAACTGCCAATCAACAC+TGG 0.604833 1_1:+66961175 Msa0037780:CDS
CAAGCATGAAGCAATTGTGA+AGG 0.606448 1_1:+66957267 Msa0037780:CDS
CTGGATCAATAGTGGCCTGA+GGG 0.608588 1_1:+66958528 Msa0037780:CDS
AGGGGTGGAACCTTGAGCCA+CGG 0.609720 1_1:-66956727 None:intergenic
AGAGGGGTTGTGATGACGTA+GGG 0.611101 1_1:-66956453 None:intergenic
AAGCGCTGCCCATATGAGGA+GGG 0.613611 1_1:-66956491 None:intergenic
AACACTGGCAGTGGATTCCA+CGG 0.615601 1_1:+66961190 Msa0037780:CDS
AAATTCCCTCATAATCAGCT+CGG 0.616005 1_1:-66957327 None:intergenic
TGCGGGAAAGAAACGGCTTG+AGG 0.621335 1_1:+66956252 Msa0037780:five_prime_UTR
TAAGCGCTGCCCATATGAGG+AGG 0.622703 1_1:-66956492 None:intergenic
ATTACCGGCACCGATGAACA+TGG 0.624333 1_1:+66956684 Msa0037780:CDS
GAGCTGGTCTTGGAGAAGAA+GGG 0.624359 1_1:-66956392 None:intergenic
TGCACAGCTTGGCTATTCCA+GGG 0.630460 1_1:+66962386 Msa0037780:CDS
GTGCTTCCTAATGTTATCTG+CGG 0.630510 1_1:+66956234 Msa0037780:five_prime_UTR
GAAGACAAAGGGGTTGCAGT+CGG 0.633467 1_1:+66962598 Msa0037780:CDS
CTGAAAGCGAGCAATGGCGT+CGG 0.634768 1_1:-66956529 None:intergenic
GCCATCTTTCCGTTTACACG+AGG 0.638336 1_1:+66957785 Msa0037780:CDS
AGGTACCTGAAAGCGAGCAA+TGG 0.639138 1_1:-66956535 None:intergenic
TAGAGAGATACCAAGTGGGG+TGG 0.641306 1_1:+66962505 Msa0037780:intron
AACTGAAGTGGAAGACAAAG+GGG 0.642983 1_1:+66962588 Msa0037780:CDS
ATAGTCTGAGTCTTGTCACT+CGG 0.651357 1_1:-66958595 None:intergenic
CAATGATGGGGACTATTCAG+AGG 0.651752 1_1:+66960926 Msa0037780:CDS
GATTGGTTGAGGTTGAGCCA+TGG 0.658278 1_1:-66962545 None:intergenic
TGCCAAATTCCACCTCTCTG+AGG 0.662782 1_1:-66960905 None:intergenic
GGGAAAGAAACGGCTTGAGG+AGG 0.662942 1_1:+66956255 Msa0037780:five_prime_UTR
ATTGTAGAGAGATACCAAGT+GGG 0.663995 1_1:+66962501 Msa0037780:intron
TGGTCTCTCTTTAAGCAAGG+AGG 0.665745 1_1:+66961861 Msa0037780:CDS
CATTGTAGAGAGATACCAAG+TGG 0.666340 1_1:+66962500 Msa0037780:intron
CTTGCTTAAAGAGAGACCAA+GGG 0.666502 1_1:-66961857 None:intergenic
TAGATACTTCTTCCTCAGAG+AGG 0.671329 1_1:+66960893 Msa0037780:CDS
GGTGGAATTTGGCAATGATG+GGG 0.671855 1_1:+66960914 Msa0037780:CDS
CCTGGATCAATAGTGGCCTG+AGG 0.674293 1_1:+66958527 Msa0037780:CDS
AATTTATTGTGTCAGCTGTG+AGG 0.678267 1_1:+66957345 Msa0037780:CDS
GGCGTTAACGTAGTAAAGAG+GGG 0.684483 1_1:-66956469 None:intergenic
AGTAACAGGAGATAGTGCAA+TGG 0.702926 1_1:-66962340 None:intergenic
TTGTAGAGAGATACCAAGTG+GGG 0.703831 1_1:+66962502 Msa0037780:intron
CGGCCATGGATTCTTGACGA+AGG 0.712399 1_1:+66959565 Msa0037780:CDS
TTGCTTAAAGAGAGACCAAG+GGG 0.714060 1_1:-66961856 None:intergenic
CATTCAAGGACAATGTAGCG+AGG 0.714076 1_1:+66961231 Msa0037780:CDS
AAGTGGGGTGGACTTAAGGG+TGG 0.714266 1_1:+66962517 Msa0037780:CDS
GAGATTGCAATGGTCCGTAG+GGG 0.717593 1_1:-66956745 None:intergenic
ATTTCCTTCTGCAGCCACCG+TGG 0.736364 1_1:-66961207 None:intergenic
CTTGTGAAATGAGATTGCAA+TGG 0.748586 1_1:-66956755 None:intergenic
ACATTAGGAAGCACACACAG+GGG 0.765019 1_1:-66956225 None:intergenic
ACTGGCAGTGGATTCCACGG+TGG 0.777092 1_1:+66961193 Msa0037780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTCTTTAATAATTTATT+TGG + chr1_1:66958463-66958482 Msa0037780:intron 10.0%
!!! AAAAAATATATAAAGCATTA+AGG - chr1_1:66960403-66960422 None:intergenic 10.0%
!! TTACACAAATATTTATATAT+AGG + chr1_1:66962775-66962794 Msa0037780:three_prime_UTR 10.0%
!! AAAAAGTTATTATCTAACTT+TGG + chr1_1:66956603-66956622 Msa0037780:intron 15.0%
!!! GATTATATTTAATTTGATAG+CGG + chr1_1:66956637-66956656 Msa0037780:intron 15.0%
!!! AAAAGAGTTAATGAAAATTT+TGG - chr1_1:66957157-66957176 None:intergenic 15.0%
!! TAAGAAACTTAAAAGAAAAA+AGG - chr1_1:66957571-66957590 None:intergenic 15.0%
!!! TTTTCATTAAAATGATTTTG+TGG + chr1_1:66958099-66958118 Msa0037780:intron 15.0%
!! TGAAATCTAATTTAATCATT+TGG + chr1_1:66958235-66958254 Msa0037780:intron 15.0%
!! TTTCTTCTATATAAATTTCT+AGG + chr1_1:66958498-66958517 Msa0037780:intron 15.0%
!! AAAAAAATATGAAAGAAAAG+AGG - chr1_1:66959039-66959058 None:intergenic 15.0%
!!! TAATTCCTTTTTATTTTCTA+TGG + chr1_1:66959184-66959203 Msa0037780:intron 15.0%
!! CAATGATTAATAACTATAAA+GGG - chr1_1:66959379-66959398 None:intergenic 15.0%
!! AGAAACATAAGATAATAAAT+AGG - chr1_1:66959605-66959624 None:intergenic 15.0%
!!! TTTTTAAAGATACTACTATT+AGG - chr1_1:66960106-66960125 None:intergenic 15.0%
!!! CTTTTTATTTTGAAAATGTT+AGG + chr1_1:66960791-66960810 Msa0037780:intron 15.0%
!!! ATAACTATTTCATTTTTGTT+AGG - chr1_1:66961529-66961548 None:intergenic 15.0%
!! TATAATGCTACAAATATTAT+TGG - chr1_1:66962026-66962045 None:intergenic 15.0%
!! AACAAAAATAATTCAGAATA+GGG - chr1_1:66962693-66962712 None:intergenic 15.0%
!! AAACAAAAATAATTCAGAAT+AGG - chr1_1:66962694-66962713 None:intergenic 15.0%
!! AAGAAAGTTATATTCATTAC+CGG + chr1_1:66956669-66956688 Msa0037780:CDS 20.0%
!!! TAGCAATTTTGTAAATTTGA+GGG - chr1_1:66956873-66956892 None:intergenic 20.0%
!!! ATAGCAATTTTGTAAATTTG+AGG - chr1_1:66956874-66956893 None:intergenic 20.0%
!!! TGATACATTTTTAGTAAAGA+TGG + chr1_1:66957039-66957058 Msa0037780:intron 20.0%
!!! AAACAATCTGAATTTTGATT+TGG + chr1_1:66958309-66958328 Msa0037780:intron 20.0%
!! AACATTATCATTATCATCAT+CGG + chr1_1:66958724-66958743 Msa0037780:intron 20.0%
!! TATTTCTCACTTAAAAGAAA+AGG - chr1_1:66959121-66959140 None:intergenic 20.0%
!! CCAATGATTAATAACTATAA+AGG - chr1_1:66959380-66959399 None:intergenic 20.0%
!! CCTTTATAGTTATTAATCAT+TGG + chr1_1:66959377-66959396 Msa0037780:intron 20.0%
!! CAAGTTCATTATTTCATTAA+TGG + chr1_1:66959449-66959468 Msa0037780:intron 20.0%
!!! ACCATATTTTTAGTTCAATA+CGG - chr1_1:66959741-66959760 None:intergenic 20.0%
!! TTCATTCCATTTATTGAATT+TGG + chr1_1:66960021-66960040 Msa0037780:intron 20.0%
!! ATAGATCCAAATTCAATAAA+TGG - chr1_1:66960030-66960049 None:intergenic 20.0%
!! ATAATCTTAACAAGTTTACA+AGG - chr1_1:66960601-66960620 None:intergenic 20.0%
!!! TGTAAACTTGTTAAGATTAT+CGG + chr1_1:66960601-66960620 Msa0037780:intron 20.0%
!!! AGTAAAAGTAATTTGATAGT+TGG + chr1_1:66960677-66960696 Msa0037780:intron 20.0%
!! TGAAAACTATAAACTAAACT+TGG + chr1_1:66960702-66960721 Msa0037780:intron 20.0%
!!! TTATTTTGAAAATGTTAGGA+TGG + chr1_1:66960795-66960814 Msa0037780:intron 20.0%
!! AGATGAAAAGAAGAAAAATA+TGG + chr1_1:66961403-66961422 Msa0037780:intron 20.0%
!!! TGATCAATATTTACTTTTGT+AGG + chr1_1:66961731-66961750 Msa0037780:intron 20.0%
!! GTTTATGTAATATATGTTCT+AGG - chr1_1:66961919-66961938 None:intergenic 20.0%
!! ATTATAAAAGATAGATTCTG+TGG + chr1_1:66962040-66962059 Msa0037780:intron 20.0%
!! AATTTGATCAAATATCAATC+AGG - chr1_1:66962087-66962106 None:intergenic 20.0%
!! ATTAATGTGAGAAAAGAAAA+AGG - chr1_1:66962128-66962147 None:intergenic 20.0%
!! ATAAGTGAAAATTCTTTCTT+AGG - chr1_1:66962270-66962289 None:intergenic 20.0%
! CTATAACGATGATTTACTAA+GGG - chr1_1:66956819-66956838 None:intergenic 25.0%
! ACTATAACGATGATTTACTA+AGG - chr1_1:66956820-66956839 None:intergenic 25.0%
!! ATTGACGTTCTTTGATTTAT+GGG + chr1_1:66957072-66957091 Msa0037780:intron 25.0%
!! TTTTGGTCCTCAAAATTTTA+GGG - chr1_1:66957140-66957159 None:intergenic 25.0%
!!! ATTTTGGTCCTCAAAATTTT+AGG - chr1_1:66957141-66957160 None:intergenic 25.0%
! ATACAAGATCTTTACTTAGA+AGG + chr1_1:66957434-66957453 Msa0037780:intron 25.0%
! TACAAGATCTTTACTTAGAA+GGG + chr1_1:66957435-66957454 Msa0037780:intron 25.0%
! TCTATTTACCATCCTTTATT+TGG + chr1_1:66957490-66957509 Msa0037780:intron 25.0%
! GTTATCTATCTTCCAAATAA+AGG - chr1_1:66957505-66957524 None:intergenic 25.0%
! ATGATTCAAATTGATAGAGT+AGG + chr1_1:66957970-66957989 Msa0037780:intron 25.0%
!!! TTTATATGCTTTTCAAGTCT+TGG + chr1_1:66958016-66958035 Msa0037780:intron 25.0%
!! TTTTTACAATCTTCTATACC+GGG - chr1_1:66958133-66958152 None:intergenic 25.0%
!! GTTTTTACAATCTTCTATAC+CGG - chr1_1:66958134-66958153 None:intergenic 25.0%
!! TAATCAATTTTGGATGCTAT+TGG - chr1_1:66958156-66958175 None:intergenic 25.0%
!! AAGTGAGAGTTAATCAATTT+TGG - chr1_1:66958166-66958185 None:intergenic 25.0%
! ATACATTAAGTGATCGAATT+CGG - chr1_1:66958275-66958294 None:intergenic 25.0%
!!! AGCATTATTCCACTATTTTT+GGG - chr1_1:66958370-66958389 None:intergenic 25.0%
!! AAGCATTATTCCACTATTTT+TGG - chr1_1:66958371-66958390 None:intergenic 25.0%
! ATTATGCACGATTATTTGTA+TGG + chr1_1:66958787-66958806 Msa0037780:intron 25.0%
! CCAAACCATAGAAAATAAAA+AGG - chr1_1:66959192-66959211 None:intergenic 25.0%
!!! CCTTTTTATTTTCTATGGTT+TGG + chr1_1:66959189-66959208 Msa0037780:intron 25.0%
! TTATGACAAGTGGATAAAAA+TGG - chr1_1:66959218-66959237 None:intergenic 25.0%
! AATAATGAACTTGAATGCTT+TGG - chr1_1:66959442-66959461 None:intergenic 25.0%
! TTATCTTATGTTTCTTCTTG+AGG + chr1_1:66959610-66959629 Msa0037780:intron 25.0%
! CATTTCTTGTAAATAAGAGA+CGG - chr1_1:66959669-66959688 None:intergenic 25.0%
! ACCGTATTGAACTAAAAATA+TGG + chr1_1:66959737-66959756 Msa0037780:intron 25.0%
!!! TATTGAGCTCTTATTTTCTA+AGG - chr1_1:66960449-66960468 None:intergenic 25.0%
! TGACATTACTTCTTAAATTC+TGG + chr1_1:66960537-66960556 Msa0037780:intron 25.0%
!! CTTAAATTCTGGTTAAAATG+TGG + chr1_1:66960548-66960567 Msa0037780:intron 25.0%
! GAAACAGATTTATAAGACTT+TGG - chr1_1:66960742-66960761 None:intergenic 25.0%
! TAACATGAATACAACTTTCT+GGG - chr1_1:66961486-66961505 None:intergenic 25.0%
! AACTTCATACACTAAAATGT+TGG + chr1_1:66961936-66961955 Msa0037780:intron 25.0%
!!! AGAAAAAGGTGTTTAGTATT+TGG - chr1_1:66962114-66962133 None:intergenic 25.0%
! TGCTTATTATACTTGGTTAA+GGG - chr1_1:66962200-66962219 None:intergenic 25.0%
! ATGCTTATTATACTTGGTTA+AGG - chr1_1:66962201-66962220 None:intergenic 25.0%
! TGGAATATGCTTATTATACT+TGG - chr1_1:66962207-66962226 None:intergenic 25.0%
!! AGAATTTTCACTTATGATGT+TGG + chr1_1:66962275-66962294 Msa0037780:intron 25.0%
! CTGTCTCTAATATAATTACA+AGG - chr1_1:66962308-66962327 None:intergenic 25.0%
!!! TAGTTTTACATTACAGAAGT+TGG - chr1_1:66962720-66962739 None:intergenic 25.0%
AATAGGGTTTATTGGATTTG+AGG - chr1_1:66956365-66956384 None:intergenic 30.0%
TACCTATTATCTAACTTCTG+TGG + chr1_1:66956553-66956572 Msa0037780:intron 30.0%
ACCTATTATCTAACTTCTGT+GGG + chr1_1:66956554-66956573 Msa0037780:intron 30.0%
!! TTTAATTTGATAGCGGCTAT+TGG + chr1_1:66956644-66956663 Msa0037780:intron 30.0%
!! TTAATTTGATAGCGGCTATT+GGG + chr1_1:66956645-66956664 Msa0037780:intron 30.0%
! AATTTTCTCACCATGTTCAT+CGG - chr1_1:66956697-66956716 None:intergenic 30.0%
TGATTTACTAAGGGATGAAA+TGG - chr1_1:66956810-66956829 None:intergenic 30.0%
ATTTACCATCACAAGTTTAG+AGG + chr1_1:66956940-66956959 Msa0037780:intron 30.0%
GTATCAAAAGTTCAAAACCA+CGG - chr1_1:66957025-66957044 None:intergenic 30.0%
! GATTGACGTTCTTTGATTTA+TGG + chr1_1:66957071-66957090 Msa0037780:intron 30.0%
! AGAACTATTTGAAGTTCTAG+AGG - chr1_1:66957473-66957492 None:intergenic 30.0%
TCTATCTTCCAAATAAAGGA+TGG - chr1_1:66957501-66957520 None:intergenic 30.0%
!! AATGTATTGCTATTTGATGC+AGG + chr1_1:66957617-66957636 Msa0037780:intron 30.0%
GTCAAAATATCAGAAGTCAT+TGG + chr1_1:66957728-66957747 Msa0037780:CDS 30.0%
AAAATATCAGAAGTCATTGG+AGG + chr1_1:66957731-66957750 Msa0037780:CDS 30.0%
GTAAGAAATGTAACAGATAG+AGG - chr1_1:66957861-66957880 None:intergenic 30.0%
!!! GCATTATTCCACTATTTTTG+GGG - chr1_1:66958369-66958388 None:intergenic 30.0%
! TAAATTTCTAGGTTCAAACC+TGG + chr1_1:66958509-66958528 Msa0037780:intron 30.0%
AGACTCAGACTATATATGTA+TGG + chr1_1:66958605-66958624 Msa0037780:CDS 30.0%
TATGGTTTGATGCTTTACTA+GGG + chr1_1:66958623-66958642 Msa0037780:CDS 30.0%
TGTTCAACAAGAGTTTAGTA+AGG - chr1_1:66958884-66958903 None:intergenic 30.0%
!! GTTGTACTCATAACTTGTTA+AGG + chr1_1:66959148-66959167 Msa0037780:intron 30.0%
!! TCATAACTTGTTAAGGTAGA+AGG + chr1_1:66959155-66959174 Msa0037780:intron 30.0%
TAAGAGAGAATTATGACAAG+TGG - chr1_1:66959228-66959247 None:intergenic 30.0%
! ATAGCCTTTTCCTAGTATTT+GGG - chr1_1:66959259-66959278 None:intergenic 30.0%
! CACAAAAATACAGATGGATT+TGG - chr1_1:66959342-66959361 None:intergenic 30.0%
!! ATCCATCTGTATTTTTGTGA+TGG + chr1_1:66959343-66959362 Msa0037780:intron 30.0%
AACCATCACAAAAATACAGA+TGG - chr1_1:66959348-66959367 None:intergenic 30.0%
!!! TAATGGTTTTGTTACTCTGT+AGG + chr1_1:66959466-66959485 Msa0037780:intron 30.0%
ATTTACAAGAAATGCTGAGT+AGG + chr1_1:66959675-66959694 Msa0037780:intron 30.0%
GAAATGTACTTTACAGACAT+AGG - chr1_1:66960004-66960023 None:intergenic 30.0%
! GGAATACATTTGAAGCATTA+CGG - chr1_1:66960428-66960447 None:intergenic 30.0%
!! ATAAAACTTGCTAACACTGT+TGG - chr1_1:66960480-66960499 None:intergenic 30.0%
TAATGTCATGATGTAGAAGA+TGG - chr1_1:66960525-66960544 None:intergenic 30.0%
! ATTCTGGTTAAAATGTGGTT+AGG + chr1_1:66960553-66960572 Msa0037780:intron 30.0%
! TTCTGGTTAAAATGTGGTTA+GGG + chr1_1:66960554-66960573 Msa0037780:intron 30.0%
AACTTACTAACCAAATCGTT+TGG - chr1_1:66960858-66960877 None:intergenic 30.0%
!! AACGATTTGGTTAGTAAGTT+TGG + chr1_1:66960858-66960877 Msa0037780:CDS 30.0%
!! ACGATTTGGTTAGTAAGTTT+GGG + chr1_1:66960859-66960878 Msa0037780:CDS 30.0%
TGTTACAAGCAATGAAAGTA+AGG - chr1_1:66961043-66961062 None:intergenic 30.0%
! CAAAACCTCTTTCACTATTT+TGG + chr1_1:66961115-66961134 Msa0037780:intron 30.0%
AATCTTCTTAATAGGACTCT+AGG + chr1_1:66961143-66961162 Msa0037780:CDS 30.0%
TCTGTTTAGATTGTCTTATC+CGG - chr1_1:66961386-66961405 None:intergenic 30.0%
! CAACTTAGATAGATCGTTTT+AGG + chr1_1:66961430-66961449 Msa0037780:intron 30.0%
GTAACATGAATACAACTTTC+TGG - chr1_1:66961487-66961506 None:intergenic 30.0%
ATTACAGAAACACAATCCAA+GGG - chr1_1:66961635-66961654 None:intergenic 30.0%
AATTACAGAAACACAATCCA+AGG - chr1_1:66961636-66961655 None:intergenic 30.0%
TATCTACAATGGTTGAAAGA+TGG - chr1_1:66961681-66961700 None:intergenic 30.0%
AACCATTGTAGATAAGTTGT+GGG + chr1_1:66961687-66961706 Msa0037780:intron 30.0%
TAATGCTGGTAATTCCTATA+TGG + chr1_1:66961824-66961843 Msa0037780:CDS 30.0%
TCAATCAGGTAAAGATTTAG+TGG - chr1_1:66962073-66962092 None:intergenic 30.0%
AAACGAAAAGAAGTGACATA+TGG - chr1_1:66962227-66962246 None:intergenic 30.0%
!! ATATGTCACTTCTTTTCGTT+TGG + chr1_1:66962226-66962245 Msa0037780:intron 30.0%
!! TATGTCACTTCTTTTCGTTT+GGG + chr1_1:66962227-66962246 Msa0037780:intron 30.0%
! TTTTCAATCCTAGCAAAGAT+TGG - chr1_1:66962565-66962584 None:intergenic 30.0%
GATTGAAAATCAAACTGAAG+TGG + chr1_1:66962576-66962595 Msa0037780:CDS 30.0%
! AAGAAGACTCTGAAAAGTAA+AGG + chr1_1:66962622-66962641 Msa0037780:CDS 30.0%
! AGAAGACTCTGAAAAGTAAA+GGG + chr1_1:66962623-66962642 Msa0037780:CDS 30.0%
AGGAACATAGTACATATGTA+TGG + chr1_1:66962795-66962814 Msa0037780:three_prime_UTR 30.0%
!! CTTTTTGAGAATAAAGTTCG+TGG + chr1_1:66962846-66962865 Msa0037780:three_prime_UTR 30.0%
AATAAGCTGGATGCATCTAA+GGG + chr1_1:66956194-66956213 Msa0037780:five_prime_UTR 35.0%
ATTGGAACGAAGTGAAAGAA+TGG - chr1_1:66956334-66956353 None:intergenic 35.0%
GAGATGGAAATAGGGTTTAT+TGG - chr1_1:66956373-66956392 None:intergenic 35.0%
ACCCACAGAAGTTAGATAAT+AGG - chr1_1:66956558-66956577 None:intergenic 35.0%
CTTGTGAAATGAGATTGCAA+TGG - chr1_1:66956758-66956777 None:intergenic 35.0%
TTTGAGGGACTAAATTGATG+AGG - chr1_1:66956858-66956877 None:intergenic 35.0%
TAGAACCTCTAAACTTGTGA+TGG - chr1_1:66956948-66956967 None:intergenic 35.0%
GGCTACTCAAGTAAAACATT+AGG + chr1_1:66956994-66957013 Msa0037780:intron 35.0%
TAAAACATTAGGTCTTTCCG+TGG + chr1_1:66957005-66957024 Msa0037780:intron 35.0%
!! TTTGCTGTTTCGTAAAATCG+AGG + chr1_1:66957100-66957119 Msa0037780:intron 35.0%
!!! AATTTTAGGGTGGAGCAATT+TGG - chr1_1:66957127-66957146 None:intergenic 35.0%
ATTTACCGAGCTGATTATGA+GGG + chr1_1:66957322-66957341 Msa0037780:CDS 35.0%
AAATTCCCTCATAATCAGCT+CGG - chr1_1:66957330-66957349 None:intergenic 35.0%
AATTTATTGTGTCAGCTGTG+AGG + chr1_1:66957345-66957364 Msa0037780:CDS 35.0%
!!! AAGGTGATAGTTTTAACTCG+AGG + chr1_1:66957373-66957392 Msa0037780:intron 35.0%
ATTCCTTTACCTCGTGTAAA+CGG - chr1_1:66957797-66957816 None:intergenic 35.0%
TTACACGAGGTAAAGGAATA+TGG + chr1_1:66957798-66957817 Msa0037780:intron 35.0%
CTTACATACTGCAATTCAAG+CGG + chr1_1:66957876-66957895 Msa0037780:intron 35.0%
TTACATACTGCAATTCAAGC+GGG + chr1_1:66957877-66957896 Msa0037780:intron 35.0%
TATGTAGTTACACGACCTTA+AGG - chr1_1:66958078-66958097 None:intergenic 35.0%
TTAAGTGATCGAATTCGGAT+TGG - chr1_1:66958270-66958289 None:intergenic 35.0%
TCGTGAAATACCTATATCAC+AGG - chr1_1:66958407-66958426 None:intergenic 35.0%
AACTGCATATCATCTCTTTC+AGG + chr1_1:66958426-66958445 Msa0037780:intron 35.0%
TCTTTCAGGAGAACTTCAAA+TGG + chr1_1:66958440-66958459 Msa0037780:intron 35.0%
CTTTCAGGAGAACTTCAAAT+GGG + chr1_1:66958441-66958460 Msa0037780:intron 35.0%
GTATGGTTTGATGCTTTACT+AGG + chr1_1:66958622-66958641 Msa0037780:CDS 35.0%
AAGCTAATAGAATAGAGCCA+GGG - chr1_1:66958691-66958710 None:intergenic 35.0%
AAAGCTAATAGAATAGAGCC+AGG - chr1_1:66958692-66958711 None:intergenic 35.0%
AGCTGCACATACAAAAAGAA+AGG - chr1_1:66958916-66958935 None:intergenic 35.0%
GAAACGGTGTTTAGTAAATC+AGG - chr1_1:66958971-66958990 None:intergenic 35.0%
TTACTAAACACCGTTTCTTC+AGG + chr1_1:66958974-66958993 Msa0037780:CDS 35.0%
TATAGTCAACCCCAAATACT+AGG + chr1_1:66959246-66959265 Msa0037780:intron 35.0%
! TAGCCTTTTCCTAGTATTTG+GGG - chr1_1:66959258-66959277 None:intergenic 35.0%
! GATAGCCTTTTCCTAGTATT+TGG - chr1_1:66959260-66959279 None:intergenic 35.0%
AGTCAAAATCTCGTTCTACT+CGG + chr1_1:66959290-66959309 Msa0037780:intron 35.0%
!! TTGACGAAGGTATTAGTACT+CGG + chr1_1:66959578-66959597 Msa0037780:intron 35.0%
!!! AGTTCACAATGGTTTTGGTT+TGG - chr1_1:66959823-66959842 None:intergenic 35.0%
! TGTACAGTTCACAATGGTTT+TGG - chr1_1:66959828-66959847 None:intergenic 35.0%
TGCATGATTGAAAACTGAAG+TGG - chr1_1:66959872-66959891 None:intergenic 35.0%
! ACTTCAGTTTTCAATCATGC+AGG + chr1_1:66959871-66959890 Msa0037780:intron 35.0%
AATAAAACGAGAATGCTGCT+CGG + chr1_1:66959961-66959980 Msa0037780:intron 35.0%
TTTACAGACATAGGAGAGAT+TGG - chr1_1:66959995-66960014 None:intergenic 35.0%
ATGTTAGGATGGTATGAAGA+TGG + chr1_1:66960806-66960825 Msa0037780:intron 35.0%
TGTTAGGATGGTATGAAGAT+GGG + chr1_1:66960807-66960826 Msa0037780:intron 35.0%
! GCTCAAAGTACCAATTGTAT+TGG - chr1_1:66960985-66961004 None:intergenic 35.0%
TGTTACAAGCAATGAAAGCA+AGG - chr1_1:66961007-66961026 None:intergenic 35.0%
TGGCAGGAAATCTTCTTAAT+AGG + chr1_1:66961135-66961154 Msa0037780:intron 35.0%
CAACCATTGTAGATAAGTTG+TGG + chr1_1:66961686-66961705 Msa0037780:intron 35.0%
TTGATCAACCTTTGTGTTAC+AGG - chr1_1:66961718-66961737 None:intergenic 35.0%
!! TATGTTCTAGGAGAATACCT+TGG - chr1_1:66961907-66961926 None:intergenic 35.0%
TATATTCTCGAACTCAAGCT+CGG - chr1_1:66962366-66962385 None:intergenic 35.0%
ATTGTAGAGAGATACCAAGT+GGG + chr1_1:66962501-66962520 Msa0037780:intron 35.0%
AAACTGAAGTGGAAGACAAA+GGG + chr1_1:66962587-66962606 Msa0037780:CDS 35.0%
AAACAAGCTCAAGAAGTTGT+TGG + chr1_1:66962652-66962671 Msa0037780:CDS 35.0%
GAATAAGCTGGATGCATCTA+AGG + chr1_1:66956193-66956212 Msa0037780:five_prime_UTR 40.0%
! AACATTAGGAAGCACACACA+GGG - chr1_1:66956229-66956248 None:intergenic 40.0%
! TAACATTAGGAAGCACACAC+AGG - chr1_1:66956230-66956249 None:intergenic 40.0%
GTGCTTCCTAATGTTATCTG+CGG + chr1_1:66956234-66956253 Msa0037780:five_prime_UTR 40.0%
TGCTTCCTAATGTTATCTGC+GGG + chr1_1:66956235-66956254 Msa0037780:five_prime_UTR 40.0%
TCTTTCCCGCAGATAACATT+AGG - chr1_1:66956243-66956262 None:intergenic 40.0%
TGTTATCTGCGGGAAAGAAA+CGG + chr1_1:66956245-66956264 Msa0037780:five_prime_UTR 40.0%
AGGAGGCAGCATCAAAAAAA+TGG + chr1_1:66956272-66956291 Msa0037780:exon 40.0%
! GGATTTGAGGTGAGAAACAT+TGG - chr1_1:66956352-66956371 None:intergenic 40.0%
GAAGAAGGGAGATGGAAATA+GGG - chr1_1:66956381-66956400 None:intergenic 40.0%
AGAAGAAGGGAGATGGAAAT+AGG - chr1_1:66956382-66956401 None:intergenic 40.0%
TTCGTCATCATTTGAGGAAG+TGG - chr1_1:66956433-66956452 None:intergenic 40.0%
!! GTTTTGATGCAGCAAGAGAT+CGG + chr1_1:66956973-66956992 Msa0037780:intron 40.0%
! TGCTCCACCCTAAAATTTTG+AGG + chr1_1:66957130-66957149 Msa0037780:intron 40.0%
!! TGGTCCTCAAAATTTTAGGG+TGG - chr1_1:66957137-66957156 None:intergenic 40.0%
CAAGCATGAAGCAATTGTGA+AGG + chr1_1:66957267-66957286 Msa0037780:CDS 40.0%
CATTTACCGAGCTGATTATG+AGG + chr1_1:66957321-66957340 Msa0037780:CDS 40.0%
TGTCAGCTGTGAGGAATATA+AGG + chr1_1:66957354-66957373 Msa0037780:CDS 40.0%
CTATTTGATGCAGGATGAGA+AGG + chr1_1:66957626-66957645 Msa0037780:intron 40.0%
TTGAAACACAAGGCTTAAGG+TGG - chr1_1:66957680-66957699 None:intergenic 40.0%
! ACCTTAAGCCTTGTGTTTCA+AGG + chr1_1:66957679-66957698 Msa0037780:CDS 40.0%
TCCTTGAAACACAAGGCTTA+AGG - chr1_1:66957683-66957702 None:intergenic 40.0%
TCCTCTTTCCTTGAAACACA+AGG - chr1_1:66957690-66957709 None:intergenic 40.0%
AAAGATGGCTGCACAAAGTT+TGG - chr1_1:66957774-66957793 None:intergenic 40.0%
TTTCCGTTTACACGAGGTAA+AGG + chr1_1:66957791-66957810 Msa0037780:intron 40.0%
TGAACAGTCTCTAGTGAATG+TGG - chr1_1:66957936-66957955 None:intergenic 40.0%
! GATTTTGTGGTCATACATCC+CGG + chr1_1:66958112-66958131 Msa0037780:intron 40.0%
! CTTTTTCTGTCTTCCCTTGT+CGG + chr1_1:66958183-66958202 Msa0037780:intron 40.0%
TAAAACAAGCCTACCGACAA+GGG - chr1_1:66958199-66958218 None:intergenic 40.0%
ATAAAACAAGCCTACCGACA+AGG - chr1_1:66958200-66958219 None:intergenic 40.0%
!! ATTTTTGGGGAAGCATGCAT+GGG - chr1_1:66958356-66958375 None:intergenic 40.0%
!!! TATTTTTGGGGAAGCATGCA+TGG - chr1_1:66958357-66958376 None:intergenic 40.0%
AGCAGTTTCACCTGTGATAT+AGG + chr1_1:66958394-66958413 Msa0037780:intron 40.0%
GTTCAAACCTGGATCAATAG+TGG + chr1_1:66958520-66958539 Msa0037780:CDS 40.0%
! ATAGTCTGAGTCTTGTCACT+CGG - chr1_1:66958598-66958617 None:intergenic 40.0%
! TTAGTAAATCAGGTTGCTCC+TGG - chr1_1:66958961-66958980 None:intergenic 40.0%
TAAACACCGTTTCTTCAGGT+TGG + chr1_1:66958978-66958997 Msa0037780:CDS 40.0%
TACACTGCACTTGATTGGTA+AGG + chr1_1:66959006-66959025 Msa0037780:CDS 40.0%
CAACCCCAAATACTAGGAAA+AGG + chr1_1:66959252-66959271 Msa0037780:intron 40.0%
! TACGTTTCCATGCCGTTTAT+TGG + chr1_1:66959495-66959514 Msa0037780:CDS 40.0%
TAGCATAGCTGGCCAATAAA+CGG - chr1_1:66959510-66959529 None:intergenic 40.0%
AGCCTTCCCAAAATGGTATA+CGG + chr1_1:66959545-66959564 Msa0037780:CDS 40.0%
ATACCTTCGTCAAGAATCCA+TGG - chr1_1:66959571-66959590 None:intergenic 40.0%
!! TGACGAAGGTATTAGTACTC+GGG + chr1_1:66959579-66959598 Msa0037780:intron 40.0%
!! GTTTGGTGTACAGTTCACAA+TGG - chr1_1:66959834-66959853 None:intergenic 40.0%
GAAGTGGTAATTGAGCAGTT+CGG - chr1_1:66959856-66959875 None:intergenic 40.0%
AGACATAGGAGAGATTGGAA+TGG - chr1_1:66959990-66960009 None:intergenic 40.0%
! TCCTGAACTTTGAAGGAAAC+TGG + chr1_1:66960163-66960182 Msa0037780:intron 40.0%
! CCTGAACTTTGAAGGAAACT+GGG + chr1_1:66960164-66960183 Msa0037780:intron 40.0%
TCACTGCTTCTTTGTTGCAT+TGG + chr1_1:66960306-66960325 Msa0037780:intron 40.0%
! TGAAAGCATGTCAATCCAAG+TGG - chr1_1:66960332-66960351 None:intergenic 40.0%
ACTTGGATTGACATGCTTTC+AGG + chr1_1:66960331-66960350 Msa0037780:intron 40.0%
TTGACATGCTTTCAGGCTAT+TGG + chr1_1:66960338-66960357 Msa0037780:intron 40.0%
TGGTTAAAATGTGGTTAGGG+TGG + chr1_1:66960557-66960576 Msa0037780:intron 40.0%
TTAAAATGTGGTTAGGGTGG+TGG + chr1_1:66960560-66960579 Msa0037780:intron 40.0%
! TTAGGGTGGTGGTATATGAT+TGG + chr1_1:66960571-66960590 Msa0037780:intron 40.0%
! AGACTTTGGTTAGTCACAGA+AGG - chr1_1:66960728-66960747 None:intergenic 40.0%
TACGCTTGAACCAAACGATT+TGG + chr1_1:66960845-66960864 Msa0037780:CDS 40.0%
TAGATACTTCTTCCTCAGAG+AGG + chr1_1:66960893-66960912 Msa0037780:CDS 40.0%
AGGTGGAATTTGGCAATGAT+GGG + chr1_1:66960913-66960932 Msa0037780:CDS 40.0%
GCACATCTTGCCAATACAAT+TGG + chr1_1:66960972-66960991 Msa0037780:CDS 40.0%
!!! ACCTCTTTCACTATTTTGGC+AGG + chr1_1:66961119-66961138 Msa0037780:intron 40.0%
TCCTGCCAAAATAGTGAAAG+AGG - chr1_1:66961123-66961142 None:intergenic 40.0%
AAAGAACTGCCAATCAACAC+TGG + chr1_1:66961175-66961194 Msa0037780:CDS 40.0%
TGCAGAAGGAAATGCATTCA+AGG + chr1_1:66961217-66961236 Msa0037780:CDS 40.0%
TAACCTCAAACTGCTGCATA+AGG - chr1_1:66961317-66961336 None:intergenic 40.0%
GTTTAGATTGTCTTATCCGG+TGG - chr1_1:66961383-66961402 None:intergenic 40.0%
TGAATACAACTTTCTGGGCA+GGG - chr1_1:66961481-66961500 None:intergenic 40.0%
ATGAATACAACTTTCTGGGC+AGG - chr1_1:66961482-66961501 None:intergenic 40.0%
CTCCCACAACTTATCTACAA+TGG - chr1_1:66961692-66961711 None:intergenic 40.0%
TTGCTTAAAGAGAGACCAAG+GGG - chr1_1:66961859-66961878 None:intergenic 40.0%
CTTGCTTAAAGAGAGACCAA+GGG - chr1_1:66961860-66961879 None:intergenic 40.0%
TTCACTTATGATGTTGGAGC+AGG + chr1_1:66962281-66962300 Msa0037780:intron 40.0%
AGTAACAGGAGATAGTGCAA+TGG - chr1_1:66962343-66962362 None:intergenic 40.0%
TCGAGAATATATGCACAGCT+TGG + chr1_1:66962375-66962394 Msa0037780:CDS 40.0%
TAAGATAGAGAGAGATACCC+AGG - chr1_1:66962430-66962449 None:intergenic 40.0%
CATTGTAGAGAGATACCAAG+TGG + chr1_1:66962500-66962519 Msa0037780:intron 40.0%
TTGTAGAGAGATACCAAGTG+GGG + chr1_1:66962502-66962521 Msa0037780:intron 40.0%
AACCTCAACCAATCTTTGCT+AGG + chr1_1:66962554-66962573 Msa0037780:CDS 40.0%
! ATCCTAGCAAAGATTGGTTG+AGG - chr1_1:66962559-66962578 None:intergenic 40.0%
CAAACTGAAGTGGAAGACAA+AGG + chr1_1:66962586-66962605 Msa0037780:CDS 40.0%
AACTGAAGTGGAAGACAAAG+GGG + chr1_1:66962588-66962607 Msa0037780:CDS 40.0%
! ACATTAGGAAGCACACACAG+GGG - chr1_1:66956228-66956247 None:intergenic 45.0%
GTAGGGTTCGTCATCATTTG+AGG - chr1_1:66956439-66956458 None:intergenic 45.0%
GGCGTTAACGTAGTAAAGAG+GGG - chr1_1:66956472-66956491 None:intergenic 45.0%
GGGCGTTAACGTAGTAAAGA+GGG - chr1_1:66956473-66956492 None:intergenic 45.0%
!! CTAACTTCTGTGGGTTAGTC+TGG + chr1_1:66956563-66956582 Msa0037780:intron 45.0%
TGAGATTGCAATGGTCCGTA+GGG - chr1_1:66956749-66956768 None:intergenic 45.0%
ATGAGATTGCAATGGTCCGT+AGG - chr1_1:66956750-66956769 None:intergenic 45.0%
CACAAGCTTACAAGACGCTT+TGG + chr1_1:66956772-66956791 Msa0037780:CDS 45.0%
GACAGACACTGTTGCGTTAA+GGG - chr1_1:66956902-66956921 None:intergenic 45.0%
!! TATTCGAGAGTGCTTGCCAA+TGG + chr1_1:66957295-66957314 Msa0037780:CDS 45.0%
AGCTCGGTAAATGTCACCAT+TGG - chr1_1:66957314-66957333 None:intergenic 45.0%
ACTGCCTCTCAATCTGATGA+TGG + chr1_1:66957523-66957542 Msa0037780:intron 45.0%
CTGCCTCTCAATCTGATGAT+GGG + chr1_1:66957524-66957543 Msa0037780:intron 45.0%
TCTCCCATCATCAGATTGAG+AGG - chr1_1:66957530-66957549 None:intergenic 45.0%
ACACAAGGCTTAAGGTGGAT+CGG - chr1_1:66957675-66957694 None:intergenic 45.0%
GCCTTGTGTTTCAAGGAAAG+AGG + chr1_1:66957686-66957705 Msa0037780:CDS 45.0%
ACCTCGTGTAAACGGAAAGA+TGG - chr1_1:66957789-66957808 None:intergenic 45.0%
!! CTTAAGGAGTGCTAACTGGT+TGG - chr1_1:66958062-66958081 None:intergenic 45.0%
CAACCAGTTAGCACTCCTTA+AGG + chr1_1:66958060-66958079 Msa0037780:intron 45.0%
GCATGCTTCCCCAAAAATAG+TGG + chr1_1:66958358-66958377 Msa0037780:intron 45.0%
AACAGGTATGCCCCAATCAA+CGG - chr1_1:66958575-66958594 None:intergenic 45.0%
TGTGCATCTCTAACTTTCCC+TGG + chr1_1:66958671-66958690 Msa0037780:intron 45.0%
TCTACTCGGTAATCTCCATC+TGG + chr1_1:66959304-66959323 Msa0037780:intron 45.0%
TGGTGTGTAAGTACTCCAGA+TGG - chr1_1:66959322-66959341 None:intergenic 45.0%
CAGCTATGCTAATGTCTGCT+GGG + chr1_1:66959519-66959538 Msa0037780:CDS 45.0%
! CCATGGCCGTATACCATTTT+GGG - chr1_1:66959554-66959573 None:intergenic 45.0%
! TCCATGGCCGTATACCATTT+TGG - chr1_1:66959555-66959574 None:intergenic 45.0%
CCTGTTCATGGTTCAGTCAT+GGG + chr1_1:66959698-66959717 Msa0037780:intron 45.0%
AGTTCATCGCACAATTGCAG+CGG - chr1_1:66959783-66959802 None:intergenic 45.0%
GCAATTGTGCGATGAACTGT+CGG + chr1_1:66959785-66959804 Msa0037780:intron 45.0%
GGTAATTGAGCAGTTCGGTT+TGG - chr1_1:66959851-66959870 None:intergenic 45.0%
CAACGACTCCTGAACTTTGA+AGG + chr1_1:66960156-66960175 Msa0037780:intron 45.0%
CCCAGTTTCCTTCAAAGTTC+AGG - chr1_1:66960167-66960186 None:intergenic 45.0%
! TCTTTGTTGCATTGGCCACT+TGG + chr1_1:66960314-66960333 Msa0037780:intron 45.0%
ATGAAGATGGGCAAGTCACT+AGG + chr1_1:66960819-66960838 Msa0037780:CDS 45.0%
ATACTTCTTCCTCAGAGAGG+TGG + chr1_1:66960896-66960915 Msa0037780:CDS 45.0%
TTCCTCAGAGAGGTGGAATT+TGG + chr1_1:66960903-66960922 Msa0037780:CDS 45.0%
GAGGTGGAATTTGGCAATGA+TGG + chr1_1:66960912-66960931 Msa0037780:CDS 45.0%
GGTGGAATTTGGCAATGATG+GGG + chr1_1:66960914-66960933 Msa0037780:CDS 45.0%
! CAATGATGGGGACTATTCAG+AGG + chr1_1:66960926-66960945 Msa0037780:CDS 45.0%
!! AATCCACTGCCAGTGTTGAT+TGG - chr1_1:66961187-66961206 None:intergenic 45.0%
CATTCAAGGACAATGTAGCG+AGG + chr1_1:66961231-66961250 Msa0037780:CDS 45.0%
ATGCCTTATGCAGCAGTTTG+AGG + chr1_1:66961311-66961330 Msa0037780:intron 45.0%
GTGGCAGGTGAATTAAACAC+AGG - chr1_1:66961364-66961383 None:intergenic 45.0%
GTGTTTAATTCACCTGCCAC+CGG + chr1_1:66961364-66961383 Msa0037780:intron 45.0%
GAACAGAACAAACTGACCCT+TGG + chr1_1:66961616-66961635 Msa0037780:intron 45.0%
!! GTTCTGGAGATTGGTAATGC+TGG + chr1_1:66961810-66961829 Msa0037780:CDS 45.0%
CCTTGCTTAAAGAGAGACCA+AGG - chr1_1:66961861-66961880 None:intergenic 45.0%
CCTTGGTCTCTCTTTAAGCA+AGG + chr1_1:66961858-66961877 Msa0037780:CDS 45.0%
TGGTCTCTCTTTAAGCAAGG+AGG + chr1_1:66961861-66961880 Msa0037780:CDS 45.0%
! ACCAATTTGAAGCAGCAACC+TGG + chr1_1:66962409-66962428 Msa0037780:CDS 45.0%
! CCAATTTGAAGCAGCAACCT+GGG + chr1_1:66962410-66962429 Msa0037780:CDS 45.0%
!!! TATCTTTAAAAAATAATTAT+CGG + chr1_1:66960114-66960133 Msa0037780:intron 5.0%
GTCTTGGAGAAGAAGGGAGA+TGG - chr1_1:66956389-66956408 None:intergenic 50.0%
!! GAGCTGGTCTTGGAGAAGAA+GGG - chr1_1:66956395-66956414 None:intergenic 50.0%
!! AGAGCTGGTCTTGGAGAAGA+AGG - chr1_1:66956396-66956415 None:intergenic 50.0%
! TTGCAGAACAGAGCTGGTCT+TGG - chr1_1:66956405-66956424 None:intergenic 50.0%
GAGCATTTGCAGAACAGAGC+TGG - chr1_1:66956411-66956430 None:intergenic 50.0%
! AGAGGGGTTGTGATGACGTA+GGG - chr1_1:66956456-66956475 None:intergenic 50.0%
! AAGAGGGGTTGTGATGACGT+AGG - chr1_1:66956457-66956476 None:intergenic 50.0%
! GGGGCGTTAACGTAGTAAAG+AGG - chr1_1:66956474-66956493 None:intergenic 50.0%
GTTAACGCCCCTCCTCATAT+GGG + chr1_1:66956483-66956502 Msa0037780:CDS 50.0%
AGGTACCTGAAAGCGAGCAA+TGG - chr1_1:66956538-66956557 None:intergenic 50.0%
!! ATTACCGGCACCGATGAACA+TGG + chr1_1:66956684-66956703 Msa0037780:CDS 50.0%
GAAAATTGCAACTGCTGCCG+TGG + chr1_1:66956710-66956729 Msa0037780:CDS 50.0%
GAGATTGCAATGGTCCGTAG+GGG - chr1_1:66956748-66956767 None:intergenic 50.0%
CGACAGACACTGTTGCGTTA+AGG - chr1_1:66956903-66956922 None:intergenic 50.0%
GCCATCTTTCCGTTTACACG+AGG + chr1_1:66957785-66957804 Msa0037780:CDS 50.0%
!! CGACCTTAAGGAGTGCTAAC+TGG - chr1_1:66958066-66958085 None:intergenic 50.0%
TTCTGTCTTCCCTTGTCGGT+AGG + chr1_1:66958187-66958206 Msa0037780:intron 50.0%
CTGGATCAATAGTGGCCTGA+GGG + chr1_1:66958528-66958547 Msa0037780:CDS 50.0%
GGGAAATGGAAAAGTCCCTC+AGG - chr1_1:66958546-66958565 None:intergenic 50.0%
ATCAACGGATGCTCGGGAAA+TGG - chr1_1:66958560-66958579 None:intergenic 50.0%
TTTCCCGAGCATCCGTTGAT+TGG + chr1_1:66958560-66958579 Msa0037780:CDS 50.0%
! TTCCCGAGCATCCGTTGATT+GGG + chr1_1:66958561-66958580 Msa0037780:CDS 50.0%
! TGAGTCTTGTCACTCGGAAC+AGG - chr1_1:66958592-66958611 None:intergenic 50.0%
ATCAGCACTAGCTGATGACC+AGG + chr1_1:66958940-66958959 Msa0037780:CDS 50.0%
AGCTGGCCAACCTGAAGAAA+CGG - chr1_1:66958987-66959006 None:intergenic 50.0%
CCAATCAAGTGCAGTGTAGC+TGG - chr1_1:66959004-66959023 None:intergenic 50.0%
CCAGCTACACTGCACTTGAT+TGG + chr1_1:66959001-66959020 Msa0037780:CDS 50.0%
TAGCTGGCCAATAAACGGCA+TGG - chr1_1:66959505-66959524 None:intergenic 50.0%
CCAGCAGACATTAGCATAGC+TGG - chr1_1:66959521-66959540 None:intergenic 50.0%
CCAGCTATGCTAATGTCTGC+TGG + chr1_1:66959518-66959537 Msa0037780:CDS 50.0%
TGGGCTAAGCCTTCCCAAAA+TGG + chr1_1:66959538-66959557 Msa0037780:CDS 50.0%
!! GGCCGTATACCATTTTGGGA+AGG - chr1_1:66959550-66959569 None:intergenic 50.0%
CCCAAAATGGTATACGGCCA+TGG + chr1_1:66959551-66959570 Msa0037780:CDS 50.0%
ATGCTGAGTAGGCCTGTTCA+TGG + chr1_1:66959686-66959705 Msa0037780:intron 50.0%
GCCTGTTCATGGTTCAGTCA+TGG + chr1_1:66959697-66959716 Msa0037780:intron 50.0%
CCCATGACTGAACCATGAAC+AGG - chr1_1:66959701-66959720 None:intergenic 50.0%
ATCGCACAATTGCAGCGGTT+TGG - chr1_1:66959778-66959797 None:intergenic 50.0%
TCAACCGTGTGCTCAATGCT+AGG - chr1_1:66960366-66960385 None:intergenic 50.0%
TGCCAAATTCCACCTCTCTG+AGG - chr1_1:66960908-66960927 None:intergenic 50.0%
! AACACTGGCAGTGGATTCCA+CGG + chr1_1:66961190-66961209 Msa0037780:CDS 50.0%
TAGCGAGGCTGGTAAAGTCT+AGG + chr1_1:66961246-66961265 Msa0037780:intron 50.0%
AGATTGTCTTATCCGGTGGC+AGG - chr1_1:66961379-66961398 None:intergenic 50.0%
AGCCTCACAAGCTGATGTCA+GGG - chr1_1:66961790-66961809 None:intergenic 50.0%
ATCAGCTTGTGAGGCTGTTC+TGG + chr1_1:66961794-66961813 Msa0037780:CDS 50.0%
!! TGTGAGGCTGTTCTGGAGAT+TGG + chr1_1:66961801-66961820 Msa0037780:CDS 50.0%
GAACTCAAGCTCGGAGTAAC+AGG - chr1_1:66962357-66962376 None:intergenic 50.0%
ATGCACAGCTTGGCTATTCC+AGG + chr1_1:66962385-66962404 Msa0037780:CDS 50.0%
TGCACAGCTTGGCTATTCCA+GGG + chr1_1:66962386-66962405 Msa0037780:CDS 50.0%
! TGCTGCTTCAAATTGGTCCC+TGG - chr1_1:66962406-66962425 None:intergenic 50.0%
! CCCAGGTTGCTGCTTCAAAT+TGG - chr1_1:66962413-66962432 None:intergenic 50.0%
TAGAGAGATACCAAGTGGGG+TGG + chr1_1:66962505-66962524 Msa0037780:intron 50.0%
! TACCAAGTGGGGTGGACTTA+AGG + chr1_1:66962513-66962532 Msa0037780:CDS 50.0%
! ACCAAGTGGGGTGGACTTAA+GGG + chr1_1:66962514-66962533 Msa0037780:CDS 50.0%
! GATTGGTTGAGGTTGAGCCA+TGG - chr1_1:66962548-66962567 None:intergenic 50.0%
GAAGACAAAGGGGTTGCAGT+CGG + chr1_1:66962598-66962617 Msa0037780:CDS 50.0%
TGCGGGAAAGAAACGGCTTG+AGG + chr1_1:66956252-66956271 Msa0037780:five_prime_UTR 55.0%
GGGAAAGAAACGGCTTGAGG+AGG + chr1_1:66956255-66956274 Msa0037780:five_prime_UTR 55.0%
CGTTAACGCCCCTCCTCATA+TGG + chr1_1:66956482-66956501 Msa0037780:CDS 55.0%
! AAGCGCTGCCCATATGAGGA+GGG - chr1_1:66956494-66956513 None:intergenic 55.0%
! TAAGCGCTGCCCATATGAGG+AGG - chr1_1:66956495-66956514 None:intergenic 55.0%
! GAGTAAGCGCTGCCCATATG+AGG - chr1_1:66956498-66956517 None:intergenic 55.0%
CTGAAAGCGAGCAATGGCGT+CGG - chr1_1:66956532-66956551 None:intergenic 55.0%
CTCACCATGTTCATCGGTGC+CGG - chr1_1:66956691-66956710 None:intergenic 55.0%
ATTGCAATGGTCCGTAGGGG+TGG - chr1_1:66956745-66956764 None:intergenic 55.0%
! TTGGGGAAGCATGCATGGGT+GGG - chr1_1:66958352-66958371 None:intergenic 55.0%
! TTTGGGGAAGCATGCATGGG+TGG - chr1_1:66958353-66958372 None:intergenic 55.0%
CCTCAGGCCACTATTGATCC+AGG - chr1_1:66958530-66958549 None:intergenic 55.0%
CCTGGATCAATAGTGGCCTG+AGG + chr1_1:66958527-66958546 Msa0037780:CDS 55.0%
! TCCCGAGCATCCGTTGATTG+GGG + chr1_1:66958562-66958581 Msa0037780:CDS 55.0%
TGCCCCAATCAACGGATGCT+CGG - chr1_1:66958567-66958586 None:intergenic 55.0%
CGGCCATGGATTCTTGACGA+AGG + chr1_1:66959565-66959584 Msa0037780:CDS 55.0%
! GGCACCTAGCATTGAGCACA+CGG + chr1_1:66960359-66960378 Msa0037780:intron 55.0%
CTGCCAATCAACACTGGCAG+TGG + chr1_1:66961181-66961200 Msa0037780:CDS 55.0%
ATTTCCTTCTGCAGCCACCG+TGG - chr1_1:66961210-66961229 None:intergenic 55.0%
CAAGGACAATGTAGCGAGGC+TGG + chr1_1:66961235-66961254 Msa0037780:CDS 55.0%
GGGAGCTGCCTGTAACACAA+AGG + chr1_1:66961707-66961726 Msa0037780:intron 55.0%
CTCCCTGACATCAGCTTGTG+AGG + chr1_1:66961785-66961804 Msa0037780:CDS 55.0%
CAGCCTCACAAGCTGATGTC+AGG - chr1_1:66961791-66961810 None:intergenic 55.0%
! AGGGGCACGCTCATCCATAT+AGG - chr1_1:66961841-66961860 None:intergenic 55.0%
ATATGGATGAGCGTGCCCCT+TGG + chr1_1:66961841-66961860 Msa0037780:CDS 55.0%
!! TGCTTCTGAAGCAGCTGCCA+AGG + chr1_1:66961887-66961906 Msa0037780:CDS 55.0%
ACCCTTAAGTCCACCCCACT+TGG - chr1_1:66962518-66962537 None:intergenic 55.0%
! AAGTGGGGTGGACTTAAGGG+TGG + chr1_1:66962517-66962536 Msa0037780:CDS 55.0%
AGCGCTGCCCATATGAGGAG+GGG - chr1_1:66956493-66956512 None:intergenic 60.0%
! AAAGCGAGCAATGGCGTCGG+CGG - chr1_1:66956529-66956548 None:intergenic 60.0%
CGACGCCATTGCTCGCTTTC+AGG + chr1_1:66956530-66956549 Msa0037780:CDS 60.0%
AGGGGTGGAACCTTGAGCCA+CGG - chr1_1:66956730-66956749 None:intergenic 60.0%
GGCTCAAGGTTCCACCCCTA+CGG + chr1_1:66956731-66956750 Msa0037780:CDS 60.0%
! TGGGGAAGCATGCATGGGTG+GGG - chr1_1:66958351-66958370 None:intergenic 60.0%
GCCCCAATCAACGGATGCTC+GGG - chr1_1:66958566-66958585 None:intergenic 60.0%
! ACTGGCAGTGGATTCCACGG+TGG + chr1_1:66961193-66961212 Msa0037780:CDS 60.0%
GATTCCACGGTGGCTGCAGA+AGG + chr1_1:66961203-66961222 Msa0037780:CDS 60.0%
ACTTAAGGGTGGCCAGGCCA+TGG + chr1_1:66962528-66962547 Msa0037780:CDS 60.0%
GTTGAGGTTGAGCCATGGCC+TGG - chr1_1:66962543-66962562 None:intergenic 60.0%
GCAACTGCTGCCGTGGCTCA+AGG + chr1_1:66956717-66956736 Msa0037780:CDS 65.0%
! GGGTGGACTTAAGGGTGGCC+AGG + chr1_1:66962522-66962541 Msa0037780:CDS 65.0%
!! AATGGCGTCGGCGGCGATGG+TGG - chr1_1:66956520-66956539 None:intergenic 70.0%
!! AGCAATGGCGTCGGCGGCGA+TGG - chr1_1:66956523-66956542 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66956191 66962879 66956191 ID=Msa0037780;Name=Msa0037780
chr1_1 mRNA 66956191 66962879 66956191 ID=Msa0037780-mRNA-1;Parent=Msa0037780;Name=Msa0037780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=100|1|1|1|1|1|12|198|598
chr1_1 exon 66956191 66956551 66956191 ID=Msa0037780-mRNA-1:exon:21661;Parent=Msa0037780-mRNA-1
chr1_1 exon 66956657 66956800 66956657 ID=Msa0037780-mRNA-1:exon:21662;Parent=Msa0037780-mRNA-1
chr1_1 exon 66957226 66957375 66957226 ID=Msa0037780-mRNA-1:exon:21663;Parent=Msa0037780-mRNA-1
chr1_1 exon 66957639 66957806 66957639 ID=Msa0037780-mRNA-1:exon:21664;Parent=Msa0037780-mRNA-1
chr1_1 exon 66958520 66958644 66958520 ID=Msa0037780-mRNA-1:exon:21665;Parent=Msa0037780-mRNA-1
chr1_1 exon 66958934 66959027 66958934 ID=Msa0037780-mRNA-1:exon:21666;Parent=Msa0037780-mRNA-1
chr1_1 exon 66959488 66959586 66959488 ID=Msa0037780-mRNA-1:exon:21667;Parent=Msa0037780-mRNA-1
chr1_1 exon 66960813 66960993 66960813 ID=Msa0037780-mRNA-1:exon:21668;Parent=Msa0037780-mRNA-1
chr1_1 exon 66961141 66961256 66961141 ID=Msa0037780-mRNA-1:exon:21669;Parent=Msa0037780-mRNA-1
chr1_1 exon 66961753 66961908 66961753 ID=Msa0037780-mRNA-1:exon:21670;Parent=Msa0037780-mRNA-1
chr1_1 exon 66962303 66962431 66962303 ID=Msa0037780-mRNA-1:exon:21671;Parent=Msa0037780-mRNA-1
chr1_1 exon 66962508 66962879 66962508 ID=Msa0037780-mRNA-1:exon:21672;Parent=Msa0037780-mRNA-1
chr1_1 five_prime_UTR 66956191 66956290 66956191 ID=Msa0037780-mRNA-1:five_prime_utr;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66956291 66956551 66956291 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66956657 66956800 66956657 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66957226 66957375 66957226 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66957639 66957806 66957639 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66958520 66958644 66958520 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66958934 66959027 66958934 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66959488 66959586 66959488 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66960813 66960993 66960813 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66961141 66961256 66961141 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66961753 66961908 66961753 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66962303 66962431 66962303 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 CDS 66962508 66962681 66962508 ID=Msa0037780-mRNA-1:cds;Parent=Msa0037780-mRNA-1
chr1_1 three_prime_UTR 66962682 66962879 66962682 ID=Msa0037780-mRNA-1:three_prime_utr;Parent=Msa0037780-mRNA-1
Gene Sequence

>Msa0037780

ATGGCAGTGAGAATGAACTGTTCGTTGCAGAACACACTCTCCATTCTTTCACTTCGTTCCAATGTTTCTCACCTCAAATCCAATAAACCCTATTTCCATCTCCCTTCTTCTCCAAGACCAGCTCTGTTCTGCAAATGCTCCACTTCCTCAAATGATGACGAACCCTACGTCATCACAACCCCTCTTTACTACGTTAACGCCCCTCCTCATATGGGCAGCGCTTACTCCACCATCGCCGCCGACGCCATTGCTCGCTTTCAGCGGCTATTGGGAAAGAAAGTTATATTCATTACCGGCACCGATGAACATGGTGAGAAAATTGCAACTGCTGCCGTGGCTCAAGGTTCCACCCCTACGGACCATTGCAATCTCATTTCACAAGCTTACAAGACGCTTTGGAATGATCTAGATATTTCGTACGATAAGTTCATTAGAACAACAGATAGCAAGCATGAAGCAATTGTGAAGGAATTTTATTCGAGAGTGCTTGCCAATGGTGACATTTACCGAGCTGATTATGAGGGAATTTATTGTGTCAGCTGTGAGGAATATAAGGATGAGAAGGAACTGCTTGAAAATAATTGTTGTCCGATCCACCTTAAGCCTTGTGTTTCAAGGAAAGAGGACAATTATTTTTTCGCACTGTCAAAATATCAGAAGTCATTGGAGGAAATTTTGAATAAAAATCCAAACTTTGTGCAGCCATCTTTCCGTTTACACGAGGTTCAAACCTGGATCAATAGTGGCCTGAGGGACTTTTCCATTTCCCGAGCATCCGTTGATTGGGGCATACCTGTTCCGAGTGACAAGACTCAGACTATATATGTATGGTTTGATGCTTTACTAGGCTACATATCAGCACTAGCTGATGACCAGGAGCAACCTGATTTACTAAACACCGTTTCTTCAGGTTGGCCAGCTACACTGCACTTGATTGGTAAGGATATTCTACGTTTCCATGCCGTTTATTGGCCAGCTATGCTAATGTCTGCTGGGCTAAGCCTTCCCAAAATGGTATACGGCCATGGATTCTTGACGAAGGATGGTATGAAGATGGGCAAGTCACTAGGAAATACGCTTGAACCAAACGATTTGGTTAGTAAGTTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAGAGGTGGAATTTGGCAATGATGGGGACTATTCAGAGGAACGCTTCATCAATATTGTAAATGCACATCTTGCCAATACAATTGGAAATCTTCTTAATAGGACTCTAGGACTTCTGAAAAAGAACTGCCAATCAACACTGGCAGTGGATTCCACGGTGGCTGCAGAAGGAAATGCATTCAAGGACAATGTAGCGAGGCTGGTTGATAAAGCTCATATGCACTATGAAAATCTCTCCCTGACATCAGCTTGTGAGGCTGTTCTGGAGATTGGTAATGCTGGTAATTCCTATATGGATGAGCGTGCCCCTTGGTCTCTCTTTAAGCAAGGAGGTACTGCTTCTGAAGCAGCTGCCAAGGACCTTGTAATTATATTAGAGACAGTGAGAATTATTGCCATTGCACTATCTCCTGTTACTCCGAGCTTGAGTTCGAGAATATATGCACAGCTTGGCTATTCCAGGGACCAATTTGAAGCAGCAACCTGGAGAGATACCAAGTGGGGTGGACTTAAGGGTGGCCAGGCCATGGCTCAACCTCAACCAATCTTTGCTAGGATTGAAAATCAAACTGAAGTGGAAGACAAAGGGGTTGCAGTCGGTAAGAAGACTCTGAAAAGTAAAGGGAAGTCGAAACAAGCTCAAGAAGTTGTTGGAGCTTAG
Protein sequence

>Msa0037780

MAVRMNCSLQNTLSILSLRSNVSHLKSNKPYFHLPSSPRPALFCKCSTSSNDDEPYVITTPLYYVNAPPHMGSAYSTIAADAIARFQRLLGKKVIFITGTDEHGEKIATAAVAQGSTPTDHCNLISQAYKTLWNDLDISYDKFIRTTDSKHEAIVKEFYSRVLANGDIYRADYEGIYCVSCEEYKDEKELLENNCCPIHLKPCVSRKEDNYFFALSKYQKSLEEILNKNPNFVQPSFRLHEVQTWINSGLRDFSISRASVDWGIPVPSDKTQTIYVWFDALLGYISALADDQEQPDLLNTVSSGWPATLHLIGKDILRFHAVYWPAMLMSAGLSLPKMVYGHGFLTKDGMKMGKSLGNTLEPNDLVSKFGTDAVRYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLAVDSTVAAEGNAFKDNVARLVDKAHMHYENLSLTSACEAVLEIGNAGNSYMDERAPWSLFKQGGTASEAAAKDLVIILETVRIIAIALSPVTPSLSSRIYAQLGYSRDQFEAATWRDTKWGGLKGGQAMAQPQPIFARIENQTEVEDKGVAVGKKTLKSKGKSKQAQEVVGA*