AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646410 MtrunA17_Chr4g0034751 96.350 274 10 0 1 274 1 274 0.0 553
Msa0646410 MtrunA17_Chr7g0270061 47.929 169 88 0 102 270 111 279 2.90e-51 170
Msa0646410 MtrunA17_Chr1g0194601 46.746 169 90 0 102 270 114 282 3.75e-49 164
Msa0646410 MtrunA17_Chr5g0409311 39.894 188 113 0 86 273 75 262 2.96e-47 159
Msa0646410 MtrunA17_Chr7g0251451 43.103 174 99 0 98 271 78 251 1.08e-45 155
Msa0646410 MtrunA17_Chr4g0038261 40.000 175 105 0 97 271 43 217 1.09e-43 148
Msa0646410 MtrunA17_Chr4g0056771 33.333 183 118 1 93 271 85 267 1.80e-32 120
Msa0646410 MtrunA17_Chr4g0055551 33.333 183 114 1 99 273 104 286 3.36e-24 99.0
Msa0646410 MtrunA17_Chr4g0015831 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0646410 MtrunA17_CPg0492721 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0646410 MtrunA17_Chr7g0272191 33.908 174 104 3 108 270 119 292 2.35e-23 97.1
Msa0646410 MtrunA17_Chr1g0184041 42.683 82 47 0 113 194 100 181 9.35e-17 76.3
Msa0646410 MtrunA17_Chr1g0207341 26.630 184 125 2 99 272 155 338 2.54e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646410 AT1G11750.1 68.116 276 81 3 1 274 1 271 2.02e-136 386
Msa0646410 AT1G11750.2 65.398 289 85 3 1 274 1 289 1.88e-134 382
Msa0646410 AT1G02560.1 46.154 169 91 0 102 270 117 285 3.65e-48 162
Msa0646410 AT1G66670.1 43.103 174 99 0 98 271 84 257 2.24e-45 155
Msa0646410 AT5G45390.1 37.853 177 110 0 95 271 75 251 5.01e-43 149
Msa0646410 AT5G23140.1 40.000 175 105 0 97 271 46 220 1.45e-42 146
Msa0646410 AT1G12410.1 35.838 173 111 0 98 270 88 260 1.76e-34 126
Msa0646410 ATCG00670.1 32.948 173 115 1 98 269 21 193 1.33e-32 119
Msa0646410 AT4G17040.1 32.787 183 115 1 99 273 105 287 1.26e-31 119
Msa0646410 AT1G09130.2 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0646410 AT1G09130.1 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0646410 AT1G09130.3 35.519 183 107 3 99 270 121 303 4.52e-29 114
Msa0646410 AT1G49970.1 27.027 185 125 2 99 273 171 355 3.09e-17 81.3

Find 88 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAGGCTTTGGAGTT+TGG 0.250950 4_3:-52175053 Msa0646410:intron
ATTGACAATGTGAAGTAGTT+TGG 0.264333 4_3:+52174785 None:intergenic
AATCAACCACAATGTGGATA+TGG 0.278581 4_3:-52177586 Msa0646410:CDS
AGAATTTGAGATTAGATAGA+TGG 0.298287 4_3:-52179609 Msa0646410:five_prime_UTR
TTGGAGTTTGGTCTTATTGA+TGG 0.304151 4_3:-52175041 Msa0646410:CDS
TTGACAATGTGAAGTAGTTT+GGG 0.318141 4_3:+52174786 None:intergenic
GAAGTAGTTTGGGGTATAAC+TGG 0.326493 4_3:+52174796 None:intergenic
AGTTAATGTCAATTTGATAA+TGG 0.341856 4_3:-52174724 Msa0646410:three_prime_UTR
GTCATGATAGCTGGTGTTAT+TGG 0.353594 4_3:+52178190 None:intergenic
ATGGTGAAGGTGGGAGTTGC+AGG 0.355066 4_3:+52179492 None:intergenic
TGATCCAGATGCAGATATAA+TGG 0.359251 4_3:-52178044 Msa0646410:intron
GATTAGATAGATGGAATAAA+AGG 0.364115 4_3:-52179600 Msa0646410:five_prime_UTR
CCCTGGTGGAAGCACTTATT+CGG 0.393075 4_3:-52177914 Msa0646410:CDS
AGATTCAATACTCTGTTTCC+AGG 0.396606 4_3:+52175015 None:intergenic
CAAGGAACACTTCTCCTTGC+CGG 0.401602 4_3:-52177658 Msa0646410:CDS
TTCATCATAATGCGAGCATT+TGG 0.412758 4_3:+52177607 None:intergenic
AAACATACTGTACCAACCTT+TGG 0.421332 4_3:+52177697 None:intergenic
CAATTTATGATTGCATGTCT+TGG 0.426577 4_3:-52177885 Msa0646410:CDS
ATTAACTGCGCCACTTTAGC+AGG 0.426652 4_3:+52174740 None:intergenic
CAAACCATTATATCTGCATC+TGG 0.434951 4_3:+52178040 None:intergenic
ATCAACCACAATGTGGATAT+GGG 0.440932 4_3:-52177585 Msa0646410:CDS
CAAGAAAGAGCCTGCTAAAG+TGG 0.443383 4_3:-52174750 Msa0646410:three_prime_UTR
TGAGCCACTTGTGAGTTAAC+TGG 0.446998 4_3:+52178103 None:intergenic
TATTGGCGGGTTCCCCGTCT+TGG 0.448456 4_3:+52178207 None:intergenic
TCTCCTTGCCGGTGGGGAGA+AGG 0.458468 4_3:-52177647 Msa0646410:CDS
TCTTCCTTGCAAAGCCCCTA+TGG 0.461392 4_3:-52179325 Msa0646410:CDS
TATGGTAGTTCTTCTCAAAT+CGG 0.473212 4_3:-52179307 Msa0646410:intron
AGGAATCGTATAATATTCAT+AGG 0.474892 4_3:-52178130 Msa0646410:CDS
TATATCGCAGCTTGTGACTC+TGG 0.483356 4_3:-52178074 Msa0646410:CDS
AATTTATGATTGCATGTCTT+GGG 0.491253 4_3:-52177884 Msa0646410:intron
AAGATGTTCAGTGCTTTCAC+TGG 0.493292 4_3:-52176181 Msa0646410:CDS
ATGATAGCTGGTGTTATTGG+CGG 0.494864 4_3:+52178193 None:intergenic
TGTGTAATAACGCCTTGTTT+TGG 0.496140 4_3:-52179570 Msa0646410:five_prime_UTR
CTCCTTGCCGGTGGGGAGAA+GGG 0.497877 4_3:-52177646 Msa0646410:CDS
CGGCAAGGAGAAGTGTTCCT+TGG 0.498121 4_3:+52177659 None:intergenic
TGATAGCTGGTGTTATTGGC+GGG 0.501907 4_3:+52178194 None:intergenic
AAGGTTGGTACAGTATGTTT+CGG 0.503063 4_3:-52177694 Msa0646410:CDS
ACACCAGCTATCATGACTCC+TGG 0.503870 4_3:-52178184 Msa0646410:CDS
TGGTCTTATTGATGGTGTCC+TGG 0.508407 4_3:-52175033 Msa0646410:CDS
ACTGGATTCTTAAATCAAAA+CGG 0.511042 4_3:+52174814 None:intergenic
ACCGAATAAGTGCTTCCACC+AGG 0.511860 4_3:+52177913 None:intergenic
GAGAGATCAAGAGCTCCTCC+AGG 0.521114 4_3:+52178166 None:intergenic
CCTCCAGGAGTCATGATAGC+TGG 0.521187 4_3:+52178181 None:intergenic
TTCCCTTCTCCCCACCGGCA+AGG 0.541555 4_3:+52177644 None:intergenic
TGAGAAAACGTAAGTTGAGA+AGG 0.541998 4_3:+52179450 None:intergenic
CGGTGTAATTGAAGCCAAGA+CGG 0.544571 4_3:-52178221 Msa0646410:CDS
GGTGTAATTGAAGCCAAGAC+GGG 0.551793 4_3:-52178220 Msa0646410:CDS
CTTAAATCAAAACGGAAACA+AGG 0.557821 4_3:+52174849 None:intergenic
GTAAGTTGACTTTCATAGAA+CGG 0.558902 4_3:-52174913 Msa0646410:three_prime_UTR
TTTCAGATAAAGCCAAAGGT+TGG 0.559455 4_3:-52177709 Msa0646410:intron
GCGCATTCCCTTCTCCCCAC+CGG 0.570395 4_3:+52177639 None:intergenic
CTTACCCCATATCCACATTG+TGG 0.574250 4_3:+52177580 None:intergenic
GATTTGAGAAGAACTACCAT+AGG 0.577205 4_3:+52179309 None:intergenic
GATTCTTCTGTGAGAAGCGA+TGG 0.577304 4_3:+52179473 None:intergenic
ATTTGAGAAGAACTACCATA+GGG 0.578078 4_3:+52179310 None:intergenic
GAACACTTCTCCTTGCCGGT+GGG 0.588591 4_3:-52177654 Msa0646410:CDS
CACTGGACAGACATTAGAGA+AGG 0.591851 4_3:-52176164 Msa0646410:CDS
GGAAGAAAGACTAACATGGC+GGG 0.596977 4_3:+52176869 None:intergenic
AACACTTCTCCTTGCCGGTG+GGG 0.597362 4_3:-52177653 Msa0646410:CDS
GGCTTATCAAGTAAAACCCA+TGG 0.598446 4_3:-52178895 Msa0646410:CDS
CAGATGTATATAAATTGCCC+TGG 0.599214 4_3:-52177931 Msa0646410:CDS
TCGCGTGAAGCTCCAAAACA+AGG 0.599276 4_3:+52179558 None:intergenic
GGAACACTTCTCCTTGCCGG+TGG 0.600384 4_3:-52177655 Msa0646410:CDS
GTACACATGATGTTGGTACA+AGG 0.602280 4_3:-52178846 Msa0646410:intron
GAGAAAACGTAAGTTGAGAA+GGG 0.606921 4_3:+52179451 None:intergenic
GTGAGAAGCGATGGTGAAGG+TGG 0.617082 4_3:+52179482 None:intergenic
TTAAATCAAAACGGAAACAA+GGG 0.617984 4_3:+52174850 None:intergenic
AAGGAAGAAGATATCGTGCA+AGG 0.618347 4_3:+52179340 None:intergenic
AGGAAGAAGATATCGTGCAA+GGG 0.624121 4_3:+52179341 None:intergenic
TCAACCACAATGTGGATATG+GGG 0.624507 4_3:-52177584 Msa0646410:intron
ATGTATATAAATTGCCCTGG+TGG 0.625092 4_3:-52177928 Msa0646410:CDS
TGACAATGTGAAGTAGTTTG+GGG 0.627479 4_3:+52174787 None:intergenic
TTCGGAGTAGCTGCAAGCCA+AGG 0.633505 4_3:-52177676 Msa0646410:CDS
GAGAAAAGTACACATGATGT+TGG 0.647062 4_3:-52178853 Msa0646410:CDS
GTTTCAAACAAAACAAACAA+TGG 0.650736 4_3:-52179535 Msa0646410:exon
CCGAATAAGTGCTTCCACCA+GGG 0.650767 4_3:+52177914 None:intergenic
ATATTCATTCATGACTCATG+AGG 0.657188 4_3:+52174946 None:intergenic
GGTGCAAGAGTACACAGAGA+GGG 0.660689 4_3:-52176143 Msa0646410:CDS
AGGTGCAAGAGTACACAGAG+AGG 0.664297 4_3:-52176144 Msa0646410:CDS
ACTACCATAGGGGCTTTGCA+AGG 0.666249 4_3:+52179321 None:intergenic
ACAGCCAGTTAACTCACAAG+TGG 0.670821 4_3:-52178107 Msa0646410:CDS
GTGTAATTGAAGCCAAGACG+GGG 0.677616 4_3:-52178219 Msa0646410:CDS
CTGACTGCAGGGTCATGTTG+AGG 0.678728 4_3:-52176925 Msa0646410:intron
TGAGAAGCGATGGTGAAGGT+GGG 0.692078 4_3:+52179483 None:intergenic
ATGATGAATCAACCACAATG+TGG 0.708739 4_3:-52177592 Msa0646410:CDS
CCAGCTATCATGACTCCTGG+AGG 0.717326 4_3:-52178181 Msa0646410:CDS
TCTGTGAGAAGCGATGGTGA+AGG 0.733173 4_3:+52179479 None:intergenic
TTTGAGAAGAACTACCATAG+GGG 0.735308 4_3:+52179311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAATATATTAATTT+AGG - chr4_3:52175241-52175260 Msa0646410:intron 0.0%
!! ATAAAAAATATATTAATTTA+GGG - chr4_3:52175242-52175261 Msa0646410:intron 0.0%
!!! TATATATATTTTTTAACAAG+AGG - chr4_3:52174743-52174762 Msa0646410:three_prime_UTR 10.0%
!! TTGATAAATTTATATACTTT+AGG - chr4_3:52175303-52175322 Msa0646410:intron 10.0%
!! TGATAAATTTATATACTTTA+GGG - chr4_3:52175304-52175323 Msa0646410:intron 10.0%
!!! AATTGAATTATTTTGTAAAT+GGG - chr4_3:52175986-52176005 Msa0646410:intron 10.0%
!!! ATCAAAGTTTTTATATATAT+TGG - chr4_3:52178484-52178503 Msa0646410:intron 10.0%
!!! GAATTGAATTATTTTGTAAA+TGG - chr4_3:52175985-52176004 Msa0646410:intron 15.0%
!!! TTTTAAGTATTAATGAATGA+AGG - chr4_3:52176103-52176122 Msa0646410:intron 15.0%
!! TCATAATAAGTAGTTAAATA+CGG - chr4_3:52176976-52176995 Msa0646410:intron 15.0%
!!! ATTTGTTTTGTTATTTACTT+TGG - chr4_3:52178754-52178773 Msa0646410:intron 15.0%
!!! TTTTCTATTGAGTATTATTA+TGG - chr4_3:52178846-52178865 Msa0646410:intron 15.0%
!! CAAAGAAAATTGGATAAAAT+TGG + chr4_3:52175106-52175125 None:intergenic 20.0%
!! AAATAGTAGACAAAGAAAAT+TGG + chr4_3:52175116-52175135 None:intergenic 20.0%
!! AAACAAAAACTCATTCATTT+GGG + chr4_3:52175163-52175182 None:intergenic 20.0%
!! AAAACAAAAACTCATTCATT+TGG + chr4_3:52175164-52175183 None:intergenic 20.0%
!!! TTTTAGTATTTGTTAGTGAT+TGG - chr4_3:52175195-52175214 Msa0646410:intron 20.0%
!! TAGTCAAAAGTCAAATAATA+GGG + chr4_3:52176385-52176404 None:intergenic 20.0%
!! TTAGTCAAAAGTCAAATAAT+AGG + chr4_3:52176386-52176405 None:intergenic 20.0%
!! AAAAACATTGACAACTATTA+AGG + chr4_3:52176622-52176641 None:intergenic 20.0%
!!! AAGCTTTTGAAATTTTGTTA+TGG - chr4_3:52176828-52176847 Msa0646410:intron 20.0%
!!! GACATAACCTTTTAATTTTT+GGG - chr4_3:52177139-52177158 Msa0646410:intron 20.0%
!!! GGAATATCTATAAGTTTTAT+TGG - chr4_3:52177174-52177193 Msa0646410:intron 20.0%
!! ATAGATATACTAAATAACGA+AGG - chr4_3:52177288-52177307 Msa0646410:intron 20.0%
!!! TTTTACATAAAAAAGAGCTA+TGG - chr4_3:52177326-52177345 Msa0646410:intron 20.0%
!!! ATTTTCAATATATGTGAAAC+TGG - chr4_3:52177999-52178018 Msa0646410:intron 20.0%
!!! TTTTATATATATTGGAGAGT+TGG - chr4_3:52178492-52178511 Msa0646410:intron 20.0%
!! TTTATATATATTGGAGAGTT+GGG - chr4_3:52178493-52178512 Msa0646410:intron 20.0%
!! AATACATATTATTATGTGAG+TGG - chr4_3:52178671-52178690 Msa0646410:intron 20.0%
!! ATATGATAAGAACTAACAAT+AGG + chr4_3:52178730-52178749 None:intergenic 20.0%
!!! AAATTTTTAGCAGTAAAACA+AGG + chr4_3:52179277-52179296 None:intergenic 20.0%
!! AGTTAATGTCAATTTGATAA+TGG - chr4_3:52179657-52179676 Msa0646410:five_prime_UTR 20.0%
!! AGAATTTGAGATTAGATAGA+TGG - chr4_3:52174772-52174791 Msa0646410:three_prime_UTR 25.0%
! GATTAGATAGATGGAATAAA+AGG - chr4_3:52174781-52174800 Msa0646410:three_prime_UTR 25.0%
! GTTTCAAACAAAACAAACAA+TGG - chr4_3:52174846-52174865 Msa0646410:intron 25.0%
! AACAAAAACTCATTCATTTG+GGG + chr4_3:52175162-52175181 None:intergenic 25.0%
! ATTACACATTTATGCAGTTT+AGG - chr4_3:52175334-52175353 Msa0646410:intron 25.0%
! TTACACATTTATGCAGTTTA+GGG - chr4_3:52175335-52175354 Msa0646410:intron 25.0%
! GTATAATGTGTTTGTTTAGT+AGG - chr4_3:52175606-52175625 Msa0646410:intron 25.0%
! ATGAAAAAATGGACAATACT+AGG + chr4_3:52175645-52175664 None:intergenic 25.0%
!!! TAGTATTGTCCATTTTTTCA+TGG - chr4_3:52175644-52175663 Msa0646410:intron 25.0%
!! GTAAGGGTATATAAGTAATT+AGG - chr4_3:52175712-52175731 Msa0646410:intron 25.0%
! GTCAATTTATGAGATGTAAT+TGG + chr4_3:52175914-52175933 None:intergenic 25.0%
! TCTTGAACTTTGATACTTTA+AGG - chr4_3:52176042-52176061 Msa0646410:intron 25.0%
! AGGAATCGTATAATATTCAT+AGG - chr4_3:52176251-52176270 Msa0646410:intron 25.0%
!!! ACTTTTGACTAATCTTACAA+TGG - chr4_3:52176394-52176413 Msa0646410:intron 25.0%
! AATTTATGATTGCATGTCTT+GGG - chr4_3:52176497-52176516 Msa0646410:intron 25.0%
!! ATGCACTTTAGATTTTATGA+TGG - chr4_3:52176854-52176873 Msa0646410:intron 25.0%
! GGATAATAACAATGACAATA+TGG - chr4_3:52176928-52176947 Msa0646410:intron 25.0%
! AATTGATAAAAAGTGAGACT+GGG + chr4_3:52176955-52176974 None:intergenic 25.0%
! TAATTGATAAAAAGTGAGAC+TGG + chr4_3:52176956-52176975 None:intergenic 25.0%
!! TATTTTACTCATATGCTAGA+TGG + chr4_3:52177008-52177027 None:intergenic 25.0%
! ATAGAAGTTTGTAAACTGTA+GGG + chr4_3:52177059-52177078 None:intergenic 25.0%
! TATAGAAGTTTGTAAACTGT+AGG + chr4_3:52177060-52177079 None:intergenic 25.0%
! ACAAACTTCTATAAAACTAG+AGG - chr4_3:52177067-52177086 Msa0646410:intron 25.0%
!!! GGACATAACCTTTTAATTTT+TGG - chr4_3:52177138-52177157 Msa0646410:intron 25.0%
! AACTAGTCCCAAAAATTAAA+AGG + chr4_3:52177149-52177168 None:intergenic 25.0%
! AACTCAAACTATTGAACAAT+CGG + chr4_3:52177792-52177811 None:intergenic 25.0%
! AACTTCTATTAACAAGATTG+GGG + chr4_3:52177821-52177840 None:intergenic 25.0%
! CAACTTCTATTAACAAGATT+GGG + chr4_3:52177822-52177841 None:intergenic 25.0%
! TCAACTTCTATTAACAAGAT+TGG + chr4_3:52177823-52177842 None:intergenic 25.0%
! TTGTTAGAAAGAGAATATTC+TGG + chr4_3:52178359-52178378 None:intergenic 25.0%
! TTATATATATTGGAGAGTTG+GGG - chr4_3:52178494-52178513 Msa0646410:intron 25.0%
! CATAAGAACTCTTTACAAAA+GGG + chr4_3:52178641-52178660 None:intergenic 25.0%
! ACATAAGAACTCTTTACAAA+AGG + chr4_3:52178642-52178661 None:intergenic 25.0%
! TAAAGAGTTCTTATGTTGTT+TGG - chr4_3:52178646-52178665 Msa0646410:intron 25.0%
!! AAAGAGTTCTTATGTTGTTT+GGG - chr4_3:52178647-52178666 Msa0646410:intron 25.0%
! GAAGTTTAGTACATTAGTAT+AGG - chr4_3:52178781-52178800 Msa0646410:intron 25.0%
! TTATGATCTTAATAGTTGTC+TGG - chr4_3:52178905-52178924 Msa0646410:intron 25.0%
!!! CAAGTTTTAGTTAAAAGAGA+CGG + chr4_3:52178949-52178968 None:intergenic 25.0%
! ATCCTCTCATTTCTAAATAT+AGG - chr4_3:52178975-52178994 Msa0646410:intron 25.0%
! ATCCTATATTTAGAAATGAG+AGG + chr4_3:52178980-52178999 None:intergenic 25.0%
! ATAAGTCTCAAATTTGATTG+TGG - chr4_3:52179141-52179160 Msa0646410:intron 25.0%
! TAAGTCTCAAATTTGATTGT+GGG - chr4_3:52179142-52179161 Msa0646410:intron 25.0%
! AATATCTGGATTTAGAAATG+AGG - chr4_3:52179199-52179218 Msa0646410:intron 25.0%
! ATATCTGGATTTAGAAATGA+GGG - chr4_3:52179200-52179219 Msa0646410:intron 25.0%
! TTAAATCAAAACGGAAACAA+GGG + chr4_3:52179534-52179553 None:intergenic 25.0%
! TTAAATCAAAACGGAAACAA+GGG + chr4_3:52179534-52179553 None:intergenic 25.0%
! ACTGGATTCTTAAATCAAAA+CGG + chr4_3:52179570-52179589 None:intergenic 25.0%
ATTTGAGAAGAACTACCATA+GGG + chr4_3:52175074-52175093 None:intergenic 30.0%
TATGGTAGTTCTTCTCAAAT+CGG - chr4_3:52175074-52175093 Msa0646410:intron 30.0%
TAATTTAGGGACTGAATTGA+TGG - chr4_3:52175255-52175274 Msa0646410:intron 30.0%
ATGCAGTTTAGGGATTAAAT+TGG - chr4_3:52175345-52175364 Msa0646410:intron 30.0%
TAAAGCATGTTATGACATGT+AGG - chr4_3:52175448-52175467 Msa0646410:intron 30.0%
!!! AAGTTTTAAGCGAAAACCAT+GGG + chr4_3:52175505-52175524 None:intergenic 30.0%
TACTGGGAAAATAAGTGTAA+GGG - chr4_3:52175696-52175715 Msa0646410:intron 30.0%
! GTAATTAGGTTGTAAAGTAG+TGG - chr4_3:52175726-52175745 Msa0646410:intron 30.0%
TTTCCATAGACTACATAGAT+AGG + chr4_3:52175821-52175840 None:intergenic 30.0%
ACGTAACAATGTGATATGTA+GGG - chr4_3:52175932-52175951 Msa0646410:intron 30.0%
! TTTCAGTTTGCTTGTAGTTA+CGG - chr4_3:52176140-52176159 Msa0646410:CDS 30.0%
CAATTTATGATTGCATGTCT+TGG - chr4_3:52176496-52176515 Msa0646410:intron 30.0%
!!! TTTTTTTGTGTGTGTGTGTA+AGG + chr4_3:52176553-52176572 None:intergenic 30.0%
GGAATTAAAGTAGCTAACAA+AGG + chr4_3:52176601-52176620 None:intergenic 30.0%
!!! GTTTTTACCTTGAAAGCATT+TGG - chr4_3:52176636-52176655 Msa0646410:intron 30.0%
GCTTTATCTGAAAACAAATG+TGG + chr4_3:52176665-52176684 None:intergenic 30.0%
! TTGTTTTCAGATAAAGCCAA+AGG - chr4_3:52176668-52176687 Msa0646410:intron 30.0%
! AGAAAAAGACGATACTGATT+TGG - chr4_3:52176895-52176914 Msa0646410:CDS 30.0%
!! AATTTTCAGCATTGAGATTG+AGG - chr4_3:52177095-52177114 Msa0646410:intron 30.0%
ATAGAATGCACTATGTAGTT+TGG - chr4_3:52177255-52177274 Msa0646410:intron 30.0%
! TAAAAAAGAGCTATGGACTA+TGG - chr4_3:52177333-52177352 Msa0646410:intron 30.0%
!! TATGGACTATGGTGTATTTT+TGG - chr4_3:52177344-52177363 Msa0646410:intron 30.0%
! TTATGTGATGTGAAGTGTTT+CGG - chr4_3:52177393-52177412 Msa0646410:intron 30.0%
!! TTTGTTATTAATCTGACTGC+AGG - chr4_3:52177444-52177463 Msa0646410:intron 30.0%
! TTGTTATTAATCTGACTGCA+GGG - chr4_3:52177445-52177464 Msa0646410:intron 30.0%
TAAAAATCATGCAACTTCAG+AGG + chr4_3:52177536-52177555 None:intergenic 30.0%
!!! AACTTAGTTTTGCTGAAAGT+AGG - chr4_3:52177588-52177607 Msa0646410:CDS 30.0%
GAACAATAGATACATGACTT+TGG - chr4_3:52177729-52177748 Msa0646410:intron 30.0%
!! ATAGAAGTTGAATTTTAGCG+CGG - chr4_3:52177832-52177851 Msa0646410:intron 30.0%
!! AGAATGGACTATTGGAAATT+TGG - chr4_3:52177949-52177968 Msa0646410:intron 30.0%
ATAGTTTATCTGACAGTTCT+TGG - chr4_3:52178120-52178139 Msa0646410:CDS 30.0%
TTTCTGTACTCCAAAAAGAA+GGG + chr4_3:52178174-52178193 None:intergenic 30.0%
! TTTTCTGTACTCCAAAAAGA+AGG + chr4_3:52178175-52178194 None:intergenic 30.0%
!!! TCTTTTTGGAGTACAGAAAA+TGG - chr4_3:52178175-52178194 Msa0646410:CDS 30.0%
TATATATATTGGAGAGTTGG+GGG - chr4_3:52178495-52178514 Msa0646410:intron 30.0%
CAGAAAATGATAAACCTGAT+GGG + chr4_3:52178594-52178613 None:intergenic 30.0%
ACAGAAAATGATAAACCTGA+TGG + chr4_3:52178595-52178614 None:intergenic 30.0%
TTACAAAAGGGTTGTAGAAA+TGG + chr4_3:52178629-52178648 None:intergenic 30.0%
AAAACAGACAAATGGACAAA+TGG + chr4_3:52178830-52178849 None:intergenic 30.0%
CTCAATAGAAAACAGACAAA+TGG + chr4_3:52178838-52178857 None:intergenic 30.0%
AAGTCTCAAATTTGATTGTG+GGG - chr4_3:52179143-52179162 Msa0646410:intron 30.0%
AAACATGAGGACTAAATATC+TGG - chr4_3:52179185-52179204 Msa0646410:intron 30.0%
TATCTGGATTTAGAAATGAG+GGG - chr4_3:52179201-52179220 Msa0646410:intron 30.0%
! CTGCTAAAAATTTTCTTACC+CGG - chr4_3:52179284-52179303 Msa0646410:intron 30.0%
ATATTCATTCATGACTCATG+AGG + chr4_3:52179438-52179457 None:intergenic 30.0%
! GTAAGTTGACTTTCATAGAA+CGG - chr4_3:52179468-52179487 Msa0646410:CDS 30.0%
!!! TCTAGTTTTGTCTGCTATTA+TGG - chr4_3:52179495-52179514 Msa0646410:CDS 30.0%
CTTAAATCAAAACGGAAACA+AGG + chr4_3:52179535-52179554 None:intergenic 30.0%
AAGGGACTCTTAAATCAAAA+CGG + chr4_3:52179543-52179562 None:intergenic 30.0%
CTTAAATCAAAACGGAAACA+AGG + chr4_3:52179535-52179554 None:intergenic 30.0%
TTGACAATGTGAAGTAGTTT+GGG + chr4_3:52179598-52179617 None:intergenic 30.0%
ATTGACAATGTGAAGTAGTT+TGG + chr4_3:52179599-52179618 None:intergenic 30.0%
!!! CACATTGTCAATTTTGAAGT+AGG - chr4_3:52179607-52179626 Msa0646410:five_prime_UTR 30.0%
!!! TGTGTAATAACGCCTTGTTT+TGG - chr4_3:52174811-52174830 Msa0646410:three_prime_UTR 35.0%
! GAGAAAACGTAAGTTGAGAA+GGG + chr4_3:52174933-52174952 None:intergenic 35.0%
! TGAGAAAACGTAAGTTGAGA+AGG + chr4_3:52174934-52174953 None:intergenic 35.0%
GTGAAAGCGAAAGTTGAAAT+GGG + chr4_3:52174980-52174999 None:intergenic 35.0%
AGTGAAAGCGAAAGTTGAAA+TGG + chr4_3:52174981-52175000 None:intergenic 35.0%
TTTGAGAAGAACTACCATAG+GGG + chr4_3:52175073-52175092 None:intergenic 35.0%
GATTTGAGAAGAACTACCAT+AGG + chr4_3:52175075-52175094 None:intergenic 35.0%
GGAAAGAAAGTGATAGTTTG+AGG - chr4_3:52175366-52175385 Msa0646410:intron 35.0%
!!! TGTAGGTTTTTGTTTTACGC+AGG - chr4_3:52175465-52175484 Msa0646410:intron 35.0%
!!! CAAGTTTTAAGCGAAAACCA+TGG + chr4_3:52175506-52175525 None:intergenic 35.0%
! GAGAAAAGTACACATGATGT+TGG - chr4_3:52175528-52175547 Msa0646410:intron 35.0%
AGCACTTGAAAGAGTAACAA+GGG + chr4_3:52175576-52175595 None:intergenic 35.0%
AAGCACTTGAAAGAGTAACA+AGG + chr4_3:52175577-52175596 None:intergenic 35.0%
TCGGTTGAACCATGAAAAAA+TGG + chr4_3:52175656-52175675 None:intergenic 35.0%
TGACTTTCTGTGATTGTACT+GGG - chr4_3:52175680-52175699 Msa0646410:intron 35.0%
GTACTGGGAAAATAAGTGTA+AGG - chr4_3:52175695-52175714 Msa0646410:intron 35.0%
! GGTCTATAAGCTGAATGTTT+TGG + chr4_3:52175766-52175785 None:intergenic 35.0%
TGACCTATCTATGTAGTCTA+TGG - chr4_3:52175815-52175834 Msa0646410:intron 35.0%
GACGTAACAATGTGATATGT+AGG - chr4_3:52175931-52175950 Msa0646410:intron 35.0%
!! ATCTCTCATCTGTTTTGTTC+AGG - chr4_3:52176231-52176250 Msa0646410:intron 35.0%
TGATCCAGATGCAGATATAA+TGG - chr4_3:52176337-52176356 Msa0646410:intron 35.0%
CAAACCATTATATCTGCATC+TGG + chr4_3:52176344-52176363 None:intergenic 35.0%
CAGATGTATATAAATTGCCC+TGG - chr4_3:52176450-52176469 Msa0646410:intron 35.0%
ATGTATATAAATTGCCCTGG+TGG - chr4_3:52176453-52176472 Msa0646410:intron 35.0%
!! TTTACCTTGAAAGCATTTGG+TGG - chr4_3:52176639-52176658 Msa0646410:intron 35.0%
TTTCAGATAAAGCCAAAGGT+TGG - chr4_3:52176672-52176691 Msa0646410:intron 35.0%
AAACATACTGTACCAACCTT+TGG + chr4_3:52176687-52176706 None:intergenic 35.0%
!! AAGGTTGGTACAGTATGTTT+CGG - chr4_3:52176687-52176706 Msa0646410:intron 35.0%
TTCATCATAATGCGAGCATT+TGG + chr4_3:52176777-52176796 None:intergenic 35.0%
ATGATGAATCAACCACAATG+TGG - chr4_3:52176789-52176808 Msa0646410:intron 35.0%
AATCAACCACAATGTGGATA+TGG - chr4_3:52176795-52176814 Msa0646410:intron 35.0%
ATCAACCACAATGTGGATAT+GGG - chr4_3:52176796-52176815 Msa0646410:intron 35.0%
!!! ATTTTTGGGACTAGTTGCAA+TGG - chr4_3:52177153-52177172 Msa0646410:intron 35.0%
TGTTTCGGTCAATACTCAAT+AGG - chr4_3:52177408-52177427 Msa0646410:intron 35.0%
TTCAGCAAAACTAAGTTCAC+AGG + chr4_3:52177585-52177604 None:intergenic 35.0%
AACCCTTGAATGTATAGTGT+TGG - chr4_3:52177658-52177677 Msa0646410:CDS 35.0%
ACCCTTGAATGTATAGTGTT+GGG - chr4_3:52177659-52177678 Msa0646410:CDS 35.0%
TCCCAACACTATACATTCAA+GGG + chr4_3:52177663-52177682 None:intergenic 35.0%
AGTCATGTATCTATTGTTCC+AGG + chr4_3:52177728-52177747 None:intergenic 35.0%
!! TGTTCAATAGTTTGAGTTGC+CGG - chr4_3:52177794-52177813 Msa0646410:intron 35.0%
!! TAGAAGTTGAATTTTAGCGC+GGG - chr4_3:52177833-52177852 Msa0646410:intron 35.0%
! CTCATCAATGGTTTAAAACC+AGG + chr4_3:52177920-52177939 None:intergenic 35.0%
TTTCCAATAGTCCATTCTGT+TGG + chr4_3:52177947-52177966 None:intergenic 35.0%
TTCTGTACTCCAAAAAGAAG+GGG + chr4_3:52178173-52178192 None:intergenic 35.0%
!!! CAGTTTTCTTTCTGTTTCTG+AGG - chr4_3:52178262-52178281 Msa0646410:intron 35.0%
TAAGTTAATGCGACTGAGAA+TGG - chr4_3:52178320-52178339 Msa0646410:intron 35.0%
ATATATATTGGAGAGTTGGG+GGG - chr4_3:52178496-52178515 Msa0646410:intron 35.0%
CCAGAATTGAGAGGAATATT+GGG - chr4_3:52178533-52178552 Msa0646410:intron 35.0%
AATTGAGAGGAATATTGGGT+TGG - chr4_3:52178537-52178556 Msa0646410:intron 35.0%
ATTGAGAGGAATATTGGGTT+GGG - chr4_3:52178538-52178557 Msa0646410:intron 35.0%
AAATGATAAACCTGATGGGA+AGG + chr4_3:52178590-52178609 None:intergenic 35.0%
CAAATGGACAAATGGCTAAA+GGG + chr4_3:52178822-52178841 None:intergenic 35.0%
ACAAATGGACAAATGGCTAA+AGG + chr4_3:52178823-52178842 None:intergenic 35.0%
GAGGAAAAATCCTGAAACTT+GGG + chr4_3:52179009-52179028 None:intergenic 35.0%
AGAGGAAAAATCCTGAAACT+TGG + chr4_3:52179010-52179029 None:intergenic 35.0%
GGAAAAATAAGTCCCAAACT+GGG + chr4_3:52179036-52179055 None:intergenic 35.0%
!! GAGACTTATTTTTCATGACG+TGG + chr4_3:52179130-52179149 None:intergenic 35.0%
AGTCTCAAATTTGATTGTGG+GGG - chr4_3:52179144-52179163 Msa0646410:intron 35.0%
! CTTGTAACTTGTGAAACATG+AGG - chr4_3:52179172-52179191 Msa0646410:intron 35.0%
GAAATGAGGGGAATAAAATC+CGG - chr4_3:52179213-52179232 Msa0646410:intron 35.0%
! ATCCGGCTCTAGTTAAAAAT+AGG - chr4_3:52179230-52179249 Msa0646410:intron 35.0%
! TCCGGCTCTAGTTAAAAATA+GGG - chr4_3:52179231-52179250 Msa0646410:intron 35.0%
!!! TCCCTATTTTTAACTAGAGC+CGG + chr4_3:52179235-52179254 None:intergenic 35.0%
AGAGGCAGATACAAAAATAC+CGG + chr4_3:52179306-52179325 None:intergenic 35.0%
!! TTGGAGTTTGGTCTTATTGA+TGG - chr4_3:52179340-52179359 Msa0646410:CDS 35.0%
AGATTCAATACTCTGTTTCC+AGG + chr4_3:52179369-52179388 None:intergenic 35.0%
TGACAATGTGAAGTAGTTTG+GGG + chr4_3:52179597-52179616 None:intergenic 35.0%
! CTCAACTTACGTTTTCTCAC+AGG - chr4_3:52174935-52174954 Msa0646410:three_prime_UTR 40.0%
AGGAAGAAGATATCGTGCAA+GGG + chr4_3:52175043-52175062 None:intergenic 40.0%
AAGGAAGAAGATATCGTGCA+AGG + chr4_3:52175044-52175063 None:intergenic 40.0%
GGCTTATCAAGTAAAACCCA+TGG - chr4_3:52175486-52175505 Msa0646410:intron 40.0%
GTACACATGATGTTGGTACA+AGG - chr4_3:52175535-52175554 Msa0646410:intron 40.0%
AATCACAGAAAGTCAGGCTT+CGG + chr4_3:52175675-52175694 None:intergenic 40.0%
CAGTACAATCACAGAAAGTC+AGG + chr4_3:52175681-52175700 None:intergenic 40.0%
CTGACTTTCTGTGATTGTAC+TGG - chr4_3:52175679-52175698 Msa0646410:intron 40.0%
AACATTCAGCTTATAGACCG+TGG - chr4_3:52175767-52175786 Msa0646410:intron 40.0%
ATTCTAAATACGCCATGCCA+CGG + chr4_3:52175787-52175806 None:intergenic 40.0%
!!! GGGGTTTTAACTCATTTCAG+AGG + chr4_3:52176070-52176089 None:intergenic 40.0%
! TTAAAAGAGTGCAGAGACTG+GGG + chr4_3:52176089-52176108 None:intergenic 40.0%
! CTTAAAAGAGTGCAGAGACT+GGG + chr4_3:52176090-52176109 None:intergenic 40.0%
! ACTTAAAAGAGTGCAGAGAC+TGG + chr4_3:52176091-52176110 None:intergenic 40.0%
!! ATGATAGCTGGTGTTATTGG+CGG + chr4_3:52176191-52176210 None:intergenic 40.0%
!! GTCATGATAGCTGGTGTTAT+TGG + chr4_3:52176194-52176213 None:intergenic 40.0%
TTTGTGTGTGTGTGTAAGGT+AGG + chr4_3:52176549-52176568 None:intergenic 40.0%
TCAACCACAATGTGGATATG+GGG - chr4_3:52176797-52176816 Msa0646410:intron 40.0%
!! AGACGATACTGATTTGGTGT+AGG - chr4_3:52176901-52176920 Msa0646410:CDS 40.0%
!! TACTGATTTGGTGTAGGAAG+AGG - chr4_3:52176907-52176926 Msa0646410:CDS 40.0%
GAAGTTTGTAAACTGTAGGG+AGG + chr4_3:52177056-52177075 None:intergenic 40.0%
AGGTTATGTCCAATGCAACT+TGG + chr4_3:52177129-52177148 None:intergenic 40.0%
AGGAAGAAAGACTAACATGG+CGG + chr4_3:52177516-52177535 None:intergenic 40.0%
CAGAGGAAGAAAGACTAACA+TGG + chr4_3:52177519-52177538 None:intergenic 40.0%
GTCCCAACACTATACATTCA+AGG + chr4_3:52177664-52177683 None:intergenic 40.0%
TCCAGGTAAAGAATTCAACG+AGG + chr4_3:52177711-52177730 None:intergenic 40.0%
CTATTAACAAGATTGGGGAC+CGG + chr4_3:52177816-52177835 None:intergenic 40.0%
! CATTTGGGCTTTTAGCAAGA+TGG + chr4_3:52177878-52177897 None:intergenic 40.0%
CTCCTCACACAAAGTCATTT+GGG + chr4_3:52177893-52177912 None:intergenic 40.0%
ACTCCTCACACAAAGTCATT+TGG + chr4_3:52177894-52177913 None:intergenic 40.0%
CAATAGTCCATTCTGTTGGA+TGG + chr4_3:52177943-52177962 None:intergenic 40.0%
!! CATCCAACAGAATGGACTAT+TGG - chr4_3:52177941-52177960 Msa0646410:intron 40.0%
TCTTCATGCTCAAGTTACCA+TGG - chr4_3:52178042-52178061 Msa0646410:intron 40.0%
TCTGTACTCCAAAAAGAAGG+GGG + chr4_3:52178172-52178191 None:intergenic 40.0%
AAGATGTTCAGTGCTTTCAC+TGG - chr4_3:52178200-52178219 Msa0646410:CDS 40.0%
GCCAGAATTGAGAGGAATAT+TGG - chr4_3:52178532-52178551 Msa0646410:intron 40.0%
CCCAATATTCCTCTCAATTC+TGG + chr4_3:52178536-52178555 None:intergenic 40.0%
!! GAATATTGGGTTGGGTAAGT+CGG - chr4_3:52178546-52178565 Msa0646410:intron 40.0%
!! AATATTGGGTTGGGTAAGTC+GGG - chr4_3:52178547-52178566 Msa0646410:intron 40.0%
! TTTTTCCTCTCAACCCAGTT+TGG - chr4_3:52179020-52179039 Msa0646410:intron 40.0%
! TTTTCCTCTCAACCCAGTTT+GGG - chr4_3:52179021-52179040 Msa0646410:intron 40.0%
GGGAAAAATAAGTCCCAAAC+TGG + chr4_3:52179037-52179056 None:intergenic 40.0%
! TCCTAATTTGCACCAGAAGT+GGG + chr4_3:52179065-52179084 None:intergenic 40.0%
! TTCCTAATTTGCACCAGAAG+TGG + chr4_3:52179066-52179085 None:intergenic 40.0%
GAGGCAGATACAAAAATACC+GGG + chr4_3:52179305-52179324 None:intergenic 40.0%
TATCTGCCTCTTCTCATTTC+AGG - chr4_3:52179315-52179334 Msa0646410:CDS 40.0%
!! TCATTTCAGGCTTTGGAGTT+TGG - chr4_3:52179328-52179347 Msa0646410:CDS 40.0%
! GAAGTAGTTTGGGGTATAAC+TGG + chr4_3:52179588-52179607 None:intergenic 40.0%
GATTCTTCTGTGAGAAGCGA+TGG + chr4_3:52174911-52174930 None:intergenic 45.0%
CGGTGTAATTGAAGCCAAGA+CGG - chr4_3:52176160-52176179 Msa0646410:CDS 45.0%
GGTGTAATTGAAGCCAAGAC+GGG - chr4_3:52176161-52176180 Msa0646410:CDS 45.0%
GTGTAATTGAAGCCAAGACG+GGG - chr4_3:52176162-52176181 Msa0646410:CDS 45.0%
!! TGATAGCTGGTGTTATTGGC+GGG + chr4_3:52176190-52176209 None:intergenic 45.0%
ACAGCCAGTTAACTCACAAG+TGG - chr4_3:52176274-52176293 Msa0646410:intron 45.0%
TGAGCCACTTGTGAGTTAAC+TGG + chr4_3:52176281-52176300 None:intergenic 45.0%
TATATCGCAGCTTGTGACTC+TGG - chr4_3:52176307-52176326 Msa0646410:intron 45.0%
TGTGTGTGTAAGGTAGGATG+GGG + chr4_3:52176543-52176562 None:intergenic 45.0%
GTGTGTGTGTAAGGTAGGAT+GGG + chr4_3:52176544-52176563 None:intergenic 45.0%
TGTGTGTGTGTAAGGTAGGA+TGG + chr4_3:52176545-52176564 None:intergenic 45.0%
CTTACCCCATATCCACATTG+TGG + chr4_3:52176804-52176823 None:intergenic 45.0%
GGAAGAAAGACTAACATGGC+GGG + chr4_3:52177515-52177534 None:intergenic 45.0%
GCCTCGTTGAATTCTTTACC+TGG - chr4_3:52177707-52177726 Msa0646410:intron 45.0%
AGCCCAAATGACTTTGTGTG+AGG - chr4_3:52177888-52177907 Msa0646410:CDS 45.0%
TCTGTTGGATGGCTCATCAA+TGG + chr4_3:52177932-52177951 None:intergenic 45.0%
TGATGAGCCATCCAACAGAA+TGG - chr4_3:52177933-52177952 Msa0646410:intron 45.0%
TAACTAAGTAGCAGCTGCCA+TGG + chr4_3:52178062-52178081 None:intergenic 45.0%
AGGGGGAAGAAGAGGAAAAT+AGG + chr4_3:52178155-52178174 None:intergenic 45.0%
CAAAAAGAAGGGGGAAGAAG+AGG + chr4_3:52178163-52178182 None:intergenic 45.0%
! CTCTTCTTCCCCCTTCTTTT+TGG - chr4_3:52178161-52178180 Msa0646410:CDS 45.0%
CACTGGACAGACATTAGAGA+AGG - chr4_3:52178217-52178236 Msa0646410:CDS 45.0%
!! ATATTGGGTTGGGTAAGTCG+GGG - chr4_3:52178548-52178567 Msa0646410:intron 45.0%
! GTCTGGCTTAAATGCACTTC+TGG - chr4_3:52178922-52178941 Msa0646410:intron 45.0%
! GGATTTTCGTCCCAAGTTTC+AGG - chr4_3:52178996-52179015 Msa0646410:intron 45.0%
! TTTTCCCAACAACCCACTTC+TGG - chr4_3:52179050-52179069 Msa0646410:intron 45.0%
ACCCACTTCTGGTGCAAATT+AGG - chr4_3:52179061-52179080 Msa0646410:intron 45.0%
CCAAAGCCTGAAATGAGAAG+AGG + chr4_3:52179324-52179343 None:intergenic 45.0%
CCTCTTCTCATTTCAGGCTT+TGG - chr4_3:52179321-52179340 Msa0646410:CDS 45.0%
!! TGGTCTTATTGATGGTGTCC+TGG - chr4_3:52179348-52179367 Msa0646410:intron 45.0%
CAAGAAAGAGCCTGCTAAAG+TGG - chr4_3:52179631-52179650 Msa0646410:five_prime_UTR 45.0%
! ATTAACTGCGCCACTTTAGC+AGG + chr4_3:52179644-52179663 None:intergenic 45.0%
TCGCGTGAAGCTCCAAAACA+AGG + chr4_3:52174826-52174845 None:intergenic 50.0%
TGAGAAGCGATGGTGAAGGT+GGG + chr4_3:52174901-52174920 None:intergenic 50.0%
TCTGTGAGAAGCGATGGTGA+AGG + chr4_3:52174905-52174924 None:intergenic 50.0%
TCTTCCTTGCAAAGCCCCTA+TGG - chr4_3:52175056-52175075 Msa0646410:intron 50.0%
ACTACCATAGGGGCTTTGCA+AGG + chr4_3:52175063-52175082 None:intergenic 50.0%
TCAGCTTATAGACCGTGGCA+TGG - chr4_3:52175772-52175791 Msa0646410:intron 50.0%
ACACCAGCTATCATGACTCC+TGG - chr4_3:52176197-52176216 Msa0646410:intron 50.0%
CCGAATAAGTGCTTCCACCA+GGG + chr4_3:52176470-52176489 None:intergenic 50.0%
!! CCCTGGTGGAAGCACTTATT+CGG - chr4_3:52176467-52176486 Msa0646410:intron 50.0%
ACCGAATAAGTGCTTCCACC+AGG + chr4_3:52176471-52176490 None:intergenic 50.0%
GTGGCCACCAAATGCTTTCA+AGG + chr4_3:52176646-52176665 None:intergenic 50.0%
CAAGGAACACTTCTCCTTGC+CGG - chr4_3:52176723-52176742 Msa0646410:intron 50.0%
GCTGATGTGCCAAGTTGCAT+TGG - chr4_3:52177117-52177136 Msa0646410:intron 50.0%
!! AGTTGAATTTTAGCGCGGGC+AGG - chr4_3:52177837-52177856 Msa0646410:intron 50.0%
CTTTGTGTGAGGAGTTGTCC+TGG - chr4_3:52177899-52177918 Msa0646410:CDS 50.0%
! AGGTGCAAGAGTACACAGAG+AGG - chr4_3:52178237-52178256 Msa0646410:intron 50.0%
! GGTGCAAGAGTACACAGAGA+GGG - chr4_3:52178238-52178257 Msa0646410:intron 50.0%
CTGATGGGAAGGAACCTAGA+GGG + chr4_3:52178579-52178598 None:intergenic 50.0%
! AAGTCCCAAACTGGGTTGAG+AGG + chr4_3:52179028-52179047 None:intergenic 50.0%
!! TGCACCAGAAGTGGGTTGTT+GGG + chr4_3:52179057-52179076 None:intergenic 50.0%
!! TTGCACCAGAAGTGGGTTGT+TGG + chr4_3:52179058-52179077 None:intergenic 50.0%
ATGGTGAAGGTGGGAGTTGC+AGG + chr4_3:52174892-52174911 None:intergenic 55.0%
GTGAGAAGCGATGGTGAAGG+TGG + chr4_3:52174902-52174921 None:intergenic 55.0%
CCTCCAGGAGTCATGATAGC+TGG + chr4_3:52176203-52176222 None:intergenic 55.0%
CCAGCTATCATGACTCCTGG+AGG - chr4_3:52176200-52176219 Msa0646410:intron 55.0%
GAGAGATCAAGAGCTCCTCC+AGG + chr4_3:52176218-52176237 None:intergenic 55.0%
TTCGGAGTAGCTGCAAGCCA+AGG - chr4_3:52176705-52176724 Msa0646410:intron 55.0%
!! CGGCAAGGAGAAGTGTTCCT+TGG + chr4_3:52176725-52176744 None:intergenic 55.0%
GAACACTTCTCCTTGCCGGT+GGG - chr4_3:52176727-52176746 Msa0646410:intron 55.0%
AACACTTCTCCTTGCCGGTG+GGG - chr4_3:52176728-52176747 Msa0646410:intron 55.0%
CTGACTGCAGGGTCATGTTG+AGG - chr4_3:52177456-52177475 Msa0646410:intron 55.0%
GGGGGTAAGCCAGAATTGAG+AGG - chr4_3:52178524-52178543 Msa0646410:intron 55.0%
CCTGATGGGAAGGAACCTAG+AGG + chr4_3:52178580-52178599 None:intergenic 55.0%
CCTCTAGGTTCCTTCCCATC+AGG - chr4_3:52178577-52178596 Msa0646410:intron 55.0%
!! TATTGGCGGGTTCCCCGTCT+TGG + chr4_3:52176177-52176196 None:intergenic 60.0%
GGAACACTTCTCCTTGCCGG+TGG - chr4_3:52176726-52176745 Msa0646410:intron 60.0%
TTGGAGAGTTGGGGGGTCGA+TGG - chr4_3:52178503-52178522 Msa0646410:intron 60.0%
TGGAGAGTTGGGGGGTCGAT+GGG - chr4_3:52178504-52178523 Msa0646410:intron 60.0%
TCTCCTTGCCGGTGGGGAGA+AGG - chr4_3:52176734-52176753 Msa0646410:intron 65.0%
CTCCTTGCCGGTGGGGAGAA+GGG - chr4_3:52176735-52176754 Msa0646410:intron 65.0%
TTCCCTTCTCCCCACCGGCA+AGG + chr4_3:52176740-52176759 None:intergenic 65.0%
GCGCATTCCCTTCTCCCCAC+CGG + chr4_3:52176745-52176764 None:intergenic 65.0%
GGAGAGTTGGGGGGTCGATG+GGG - chr4_3:52178505-52178524 Msa0646410:intron 65.0%
GAGAGTTGGGGGGTCGATGG+GGG - chr4_3:52178506-52178525 Msa0646410:intron 65.0%
GGGTTGGGTAAGTCGGGGCA+AGG - chr4_3:52178553-52178572 Msa0646410:intron 65.0%
AAGTCGGGGCAAGGCCCTCT+AGG - chr4_3:52178562-52178581 Msa0646410:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52174714 52179689 52174714 ID=Msa0646410;Name=Msa0646410
chr4_3 mRNA 52174714 52179689 52174714 ID=Msa0646410-mRNA-1;Parent=Msa0646410;Name=Msa0646410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=151|1|1|1|0.77|0.7|10|278|274
chr4_3 exon 52174714 52174833 52174714 ID=Msa0646410-mRNA-1:exon:12734;Parent=Msa0646410-mRNA-1
chr4_3 exon 52174861 52175066 52174861 ID=Msa0646410-mRNA-1:exon:12733;Parent=Msa0646410-mRNA-1
chr4_3 exon 52176120 52176212 52176120 ID=Msa0646410-mRNA-1:exon:12732;Parent=Msa0646410-mRNA-1
chr4_3 exon 52176884 52176937 52176884 ID=Msa0646410-mRNA-1:exon:12731;Parent=Msa0646410-mRNA-1
chr4_3 exon 52177585 52177725 52177585 ID=Msa0646410-mRNA-1:exon:12730;Parent=Msa0646410-mRNA-1
chr4_3 exon 52177885 52177950 52177885 ID=Msa0646410-mRNA-1:exon:12729;Parent=Msa0646410-mRNA-1
chr4_3 exon 52178045 52178246 52178045 ID=Msa0646410-mRNA-1:exon:12728;Parent=Msa0646410-mRNA-1
chr4_3 exon 52178847 52178916 52178847 ID=Msa0646410-mRNA-1:exon:12727;Parent=Msa0646410-mRNA-1
chr4_3 exon 52179308 52179366 52179308 ID=Msa0646410-mRNA-1:exon:12726;Parent=Msa0646410-mRNA-1
chr4_3 exon 52179447 52179689 52179447 ID=Msa0646410-mRNA-1:exon:12725;Parent=Msa0646410-mRNA-1
chr4_3 five_prime_UTR 52179539 52179689 52179539 ID=Msa0646410-mRNA-1:five_prime_utr;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52179447 52179538 52179447 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52179308 52179366 52179308 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52178847 52178916 52178847 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52178045 52178246 52178045 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52177885 52177950 52177885 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52177585 52177725 52177585 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52176884 52176937 52176884 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52176120 52176212 52176120 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 CDS 52175019 52175066 52175019 ID=Msa0646410-mRNA-1:cds;Parent=Msa0646410-mRNA-1
chr4_3 three_prime_UTR 52174861 52175018 52174861 ID=Msa0646410-mRNA-1:three_prime_utr;Parent=Msa0646410-mRNA-1
chr4_3 three_prime_UTR 52174714 52174833 52174714 ID=Msa0646410-mRNA-1:three_prime_utr;Parent=Msa0646410-mRNA-1
Gene Sequence

>Msa0646410

ATGGTATCTCAAGCGCTATCAGTTCCTGCAACTCCCACCTTCACCATCGCTTCTCACAGAAGAATCCCTTCTCAACTTACGTTTTCTCACAGAAACCCTTGCACGATATCTTCTTCCTTGCAAAGCCCCTATGGTAGTTCTTCTCAAATCGGCTTATCAAGTAAAACCCATGGTTTTCGCTTAAAACTTGATGAGAAAAGTACACATGATGTTGGTACAAGTTACGGTGTAATTGAAGCCAAGACGGGGAACCCGCCAATAACACCAGCTATCATGACTCCTGGAGGAGCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTACTATTGATCCAGATGCAGATATAATGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCGGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCCGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCTCGCATTATGATGAATCAACCACAATGTGGATATGGGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCCCGCCATAAAATGGAGAAGATGTTCAGTGCTTTCACTGGACAGACATTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

Protein sequence

>Msa0646410

MVSQALSVPATPTFTIASHRRIPSQLTFSHRNPCTISSSLQSPYGSSSQIGLSSKTHGFRLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADIMMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMMNQPQCGYGGHVEDVRRLVNEAVQSRHKMEKMFSAFTGQTLEKVQEYTERDSFLSVSEALEFGLIDGVLETEY*