AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419150 MtrunA17_Chr3g0116821 97.751 489 8 2 1 486 1 489 0.0 966
Msa0419150 MtrunA17_Chr7g0259481 61.075 465 157 7 26 485 3 448 1.88e-180 513
Msa0419150 MtrunA17_Chr2g0287231 69.643 224 56 2 87 308 14 227 1.81e-103 308
Msa0419150 MtrunA17_Chr2g0287241 54.444 180 75 2 308 485 30 204 3.30e-63 204
Msa0419150 MtrunA17_Chr3g0114371 44.939 247 94 7 244 485 63 272 1.35e-51 176
Msa0419150 MtrunA17_Chr6g0458111 30.787 445 245 16 85 484 3 429 5.67e-46 166
Msa0419150 MtrunA17_Chr6g0458091 30.787 445 245 16 85 484 3 429 5.67e-46 166
Msa0419150 MtrunA17_Chr1g0200071 30.112 445 248 16 85 484 3 429 9.69e-45 162
Msa0419150 MtrunA17_Chr1g0200091 30.112 445 248 16 85 484 3 429 9.69e-45 162
Msa0419150 MtrunA17_Chr1g0200121 29.888 445 249 16 85 484 3 429 1.46e-44 162
Msa0419150 MtrunA17_Chr4g0005781 29.663 445 250 16 85 484 3 429 2.37e-43 159
Msa0419150 MtrunA17_Chr8g0380091 29.663 445 248 16 89 486 275 701 7.93e-42 158
Msa0419150 MtrunA17_Chr1g0150331 29.587 436 239 14 85 484 3 406 1.69e-39 147
Msa0419150 MtrunA17_Chr1g0193591 30.222 450 235 19 85 481 3 426 7.13e-38 144
Msa0419150 MtrunA17_Chr1g0204031 30.512 449 236 22 85 484 3 424 1.57e-35 140
Msa0419150 MtrunA17_Chr1g0156421 28.442 443 252 15 85 481 3 426 3.19e-35 136
Msa0419150 MtrunA17_Chr8g0340771 26.906 446 265 14 84 484 2 431 1.18e-32 129
Msa0419150 MtrunA17_Chr6g0483121 27.009 448 258 13 86 484 88 515 1.62e-32 130
Msa0419150 MtrunA17_Chr8g0336511 30.000 330 185 11 79 379 67 379 2.70e-31 124
Msa0419150 MtrunA17_Chr8g0392641 26.966 445 262 13 86 484 143 570 8.52e-30 122
Msa0419150 MtrunA17_Chr5g0415391 26.933 401 239 13 114 481 9 388 1.32e-25 108
Msa0419150 MtrunA17_Chr2g0318291 31.720 186 103 3 87 248 7 192 3.85e-23 97.8
Msa0419150 MtrunA17_Chr1g0196251 26.166 386 218 14 86 444 5 350 6.68e-22 97.4
Msa0419150 MtrunA17_Chr4g0040791 30.830 253 161 7 91 340 59 300 8.87e-22 99.0
Msa0419150 MtrunA17_Chr1g0204041 32.026 153 82 3 84 214 2 154 4.00e-18 82.0
Msa0419150 MtrunA17_Chr1g0156411 33.557 149 76 3 79 205 2 149 4.41e-17 78.2
Msa0419150 MtrunA17_Chr2g0319341 26.801 347 200 15 169 481 1 327 2.53e-16 81.3
Msa0419150 MtrunA17_Chr8g0340371 26.357 258 133 10 84 304 2 239 9.65e-16 76.6
Msa0419150 MtrunA17_Chr2g0315521 26.690 281 151 9 86 332 29 288 3.21e-14 74.7
Msa0419150 MtrunA17_Chr2g0312061 26.855 283 148 11 86 332 29 288 6.14e-14 73.9
Msa0419150 MtrunA17_Chr1g0173551 24.845 322 220 8 80 393 73 380 2.03e-13 72.8
Msa0419150 MtrunA17_Chr4g0066951 34.518 197 107 8 84 269 10 195 1.31e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419150 AT4G20360.1 84.914 464 60 4 29 486 17 476 0.0 765
Msa0419150 AT4G20360.2 84.914 464 60 4 29 486 17 476 0.0 765
Msa0419150 AT4G02930.1 67.241 406 117 4 83 485 61 453 0.0 515
Msa0419150 AT1G07920.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT1G07940.4 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT1G07940.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT1G07940.2 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT1G07940.3 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT5G60390.3 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT5G60390.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT5G60390.2 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT1G07930.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0419150 AT5G10630.4 29.452 438 258 14 89 486 315 741 3.10e-38 149
Msa0419150 AT5G10630.3 29.452 438 258 14 89 486 310 736 3.67e-38 148
Msa0419150 AT5G10630.1 29.478 441 254 15 89 486 239 665 4.18e-38 148
Msa0419150 AT5G10630.5 29.478 441 254 15 89 486 240 666 4.21e-38 148
Msa0419150 AT5G10630.2 29.478 441 254 15 89 486 240 666 4.21e-38 148
Msa0419150 AT1G18070.1 25.577 477 287 14 60 485 67 526 1.08e-31 128
Msa0419150 AT1G18070.2 25.577 477 287 14 60 485 67 526 1.08e-31 128
Msa0419150 AT1G07930.2 32.075 265 138 9 85 319 3 255 1.28e-30 122
Msa0419150 AT1G18070.3 25.205 488 286 15 60 485 67 537 5.02e-29 120
Msa0419150 AT2G31060.2 32.157 255 155 8 91 340 61 302 4.13e-21 97.1
Msa0419150 AT2G31060.3 32.046 259 154 9 91 340 61 306 3.03e-20 94.4
Msa0419150 AT2G18720.1 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
Msa0419150 AT2G18720.2 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
Msa0419150 AT5G13650.2 24.806 387 253 11 1 374 1 362 5.52e-16 81.3
Msa0419150 AT1G04170.2 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
Msa0419150 AT1G04170.1 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
Msa0419150 AT5G13650.1 24.620 329 214 8 62 374 51 361 1.97e-15 79.7
Msa0419150 AT4G18330.2 27.076 277 147 10 90 332 40 295 3.22e-15 78.2
Msa0419150 AT4G18330.1 29.843 191 105 7 90 254 40 227 9.35e-14 72.0
Msa0419150 AT5G39900.1 25.472 318 194 10 29 334 7 293 1.04e-12 70.9
Msa0419150 AT2G18720.3 27.368 190 108 5 152 332 33 201 1.06e-12 70.1

Find 181 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGATGCAATTTA+AGG 0.087502 3_2:-67058163 None:intergenic
GATGACATTCCGATTGTTTC+TGG 0.182010 3_2:+67057181 Msa0419150:CDS
GGAAATGTTTCAGAAGATTT+TGG 0.183773 3_2:+67057492 Msa0419150:CDS
CATTCAACTCTATCTAATTA+AGG 0.190638 3_2:-67058219 None:intergenic
TTGTGTTATCCTCTCACTTT+TGG 0.213891 3_2:-67055979 None:intergenic
CACCTTTCTTTGCTGGTTAT+AGG 0.252585 3_2:+67057677 Msa0419150:CDS
TGTTTCTGGTTCAGCGCTAT+TGG 0.258255 3_2:+67057195 Msa0419150:CDS
GGATAAGATTTATAAACTTA+TGG 0.261517 3_2:+67057273 Msa0419150:CDS
ATCCTCAATAGCTAGCAAAA+AGG 0.263547 3_2:-67057344 None:intergenic
GAGGCGAGTTAGGGTTAGTT+TGG 0.273503 3_2:-67056273 None:intergenic
AGGAAGAGGAGAGGCGAGTT+AGG 0.275765 3_2:-67056283 None:intergenic
CGGATTGTCTTTAGTCGAAT+TGG 0.292281 3_2:+67058061 Msa0419150:three_prime_UTR
GCCTCATATGCGTGCTATAA+TGG 0.308463 3_2:+67058264 Msa0419150:three_prime_UTR
CGCTGCTCTCACCATGGCTT+TGG 0.310361 3_2:+67056472 Msa0419150:CDS
GGAGCGAGTGGTGGTTGGTT+TGG 0.311291 3_2:-67056345 None:intergenic
ATTGGTGGAAGGGGAGGAAA+TGG 0.323140 3_2:-67056243 None:intergenic
AGCGAGAAGGATGTGTTCTT+TGG 0.340715 3_2:-67056732 None:intergenic
ACTTGTGGAGCTTGAAGTTC+GGG 0.340961 3_2:+67057129 Msa0419150:CDS
GAGTGAGGAGTGATAGTTCC+AGG 0.341582 3_2:-67057601 None:intergenic
AGACATTCACCTTTCTTTGC+TGG 0.352845 3_2:+67057670 Msa0419150:CDS
CTCTCGTCTTACGAATTTCC+TGG 0.356869 3_2:+67057157 Msa0419150:CDS
TGAAGGTGTGGGTGTGTGGT+GGG 0.357080 3_2:-67056208 None:intergenic
GGGCGGCACGGACGGTGAAA+GGG 0.362945 3_2:-67056370 None:intergenic
ACCGTTGGAGCTGGTGTTAT+CGG 0.367859 3_2:+67057877 Msa0419150:CDS
ATAGGGTTAAATTTAACTTT+CGG 0.368400 3_2:+67058041 Msa0419150:three_prime_UTR
GGAGGATTGTGGAGGGGTTG+AGG 0.370592 3_2:-67056307 None:intergenic
AACTTGTGGAGCTTGAAGTT+CGG 0.370653 3_2:+67057128 Msa0419150:CDS
TTATCACCACGTTTAATAGT+AGG 0.374526 3_2:-67057241 None:intergenic
GGGAGATCTGTTTGTCTTTG+AGG 0.374733 3_2:-67057322 None:intergenic
TGGAGGAGGGAGTGAGGTGG+AGG 0.376046 3_2:-67056325 None:intergenic
GCGAGTGGTGGTTGGTTTGG+AGG 0.378352 3_2:-67056342 None:intergenic
GGTTAGTTTGGGACGGAGAT+TGG 0.379136 3_2:-67056261 None:intergenic
TCTGTTTGTCTTTGAGGGAT+TGG 0.380993 3_2:-67057316 None:intergenic
GGAGATCTGTTTGTCTTTGA+GGG 0.382317 3_2:-67057321 None:intergenic
GGGAGTGAGGTGGAGGATTG+TGG 0.385366 3_2:-67056318 None:intergenic
TATTCAAAGAGGGATGGTTT+TGG 0.389492 3_2:+67057573 Msa0419150:CDS
TGTTCTTTGGTTTGAGGCAT+AGG 0.393640 3_2:-67056719 None:intergenic
CGGGCGGCACGGACGGTGAA+AGG 0.394872 3_2:-67056371 None:intergenic
ATACCACGAGCACGTTCTTC+AGG 0.396105 3_2:-67056545 None:intergenic
AGTGGTGGTTGGTTTGGAGG+AGG 0.397013 3_2:-67056339 None:intergenic
ATTCAACTCTATCTAATTAA+GGG 0.403038 3_2:-67058218 None:intergenic
GTGAAGGTGTGGGTGTGTGG+TGG 0.407058 3_2:-67056209 None:intergenic
ACGGAGATTGGTGGAAGGGG+AGG 0.407272 3_2:-67056249 None:intergenic
GGAGGAAATGGAAGCGGAAG+TGG 0.408836 3_2:-67056231 None:intergenic
GGAAGAGGAGAGGCGAGTTA+GGG 0.409378 3_2:-67056282 None:intergenic
AGGCGAGTTAGGGTTAGTTT+GGG 0.417120 3_2:-67056272 None:intergenic
GTGGTGAAGGTGTGGGTGTG+TGG 0.422895 3_2:-67056212 None:intergenic
GGGACGGAGATTGGTGGAAG+GGG 0.423977 3_2:-67056252 None:intergenic
GTGGTGGTTGGTTTGGAGGA+GGG 0.429456 3_2:-67056338 None:intergenic
CTGCATCATCACTCTTCAAA+TGG 0.430090 3_2:+67057937 Msa0419150:three_prime_UTR
GTGTTGTGAGAGTTTGAGTT+TGG 0.431138 3_2:-67056186 None:intergenic
AATTGAGAGTGAAGAGAGAA+AGG 0.432632 3_2:-67056117 None:intergenic
GGCGGCACGGACGGTGAAAG+GGG 0.436818 3_2:-67056369 None:intergenic
AGTGAGGTGGAGGATTGTGG+AGG 0.438490 3_2:-67056315 None:intergenic
ATTGGCGTTGGAAGCATTAG+TGG 0.440962 3_2:+67057213 Msa0419150:CDS
TATGTCAAGAATATGATTAC+TGG 0.446601 3_2:+67056647 Msa0419150:CDS
AAGAGTGATGATGCAGCAAC+TGG 0.446921 3_2:-67057930 None:intergenic
GTGAGGTGGAGGATTGTGGA+GGG 0.458086 3_2:-67056314 None:intergenic
GATTGTGGAGGGGTTGAGGA+AGG 0.459794 3_2:-67056303 None:intergenic
GGAGGGGTTGAGGAAGGAAG+AGG 0.461332 3_2:-67056297 None:intergenic
ATGAGGTTTGCTATTAGAGA+AGG 0.465146 3_2:+67057847 Msa0419150:CDS
TTGTGAGAGTTTGAGTTTGG+TGG 0.467241 3_2:-67056183 None:intergenic
GGTGATGTAGTTGACCTTGT+TGG 0.469409 3_2:+67057433 Msa0419150:CDS
GTTTGGAGGAGGGAGTGAGG+TGG 0.474912 3_2:-67056328 None:intergenic
TTGGTTTGGAGGAGGGAGTG+AGG 0.480763 3_2:-67056331 None:intergenic
CACCATCTTAACACGATCAC+CGG 0.483098 3_2:-67057788 None:intergenic
GGCACGGACGGTGAAAGGGG+AGG 0.483277 3_2:-67056366 None:intergenic
CTCGTTGTCTCCGGTGCCGA+TGG 0.486396 3_2:+67056695 Msa0419150:CDS
CAGAAGATTGATATTCAAAG+AGG 0.486716 3_2:+67057562 Msa0419150:CDS
AGGTTTGCTATTAGAGAAGG+AGG 0.486983 3_2:+67057850 Msa0419150:CDS
ATGAGAACCACAGATGTTAC+CGG 0.488905 3_2:+67057712 Msa0419150:CDS
GGCGCTATTCTCGTTGTCTC+CGG 0.489588 3_2:+67056686 Msa0419150:CDS
TAGTTGACCTTGTTGGTTTG+AGG 0.490161 3_2:+67057440 Msa0419150:CDS
TATCACCACGTTTAATAGTA+GGG 0.492921 3_2:-67057240 None:intergenic
TGCCACCGGAAGAATTGAAA+GGG 0.496315 3_2:+67057396 Msa0419150:CDS
AGTTGACCTTGTTGGTTTGA+GGG 0.496349 3_2:+67057441 Msa0419150:CDS
GGGGAGGAGCGAGTGGTGGT+TGG 0.499727 3_2:-67056350 None:intergenic
CGAATTTGCCACGGGCGGCA+CGG 0.503769 3_2:-67056382 None:intergenic
TTTGCCACGGGCGGCACGGA+CGG 0.506319 3_2:-67056378 None:intergenic
TTTGCGCTCGAATTTGCCAC+GGG 0.508126 3_2:-67056390 None:intergenic
TCCATTATAGCACGCATATG+AGG 0.508261 3_2:-67058265 None:intergenic
GATTACTGGTGCTGCTCAGA+TGG 0.508789 3_2:+67056661 Msa0419150:CDS
AGGATGTGTTCTTTGGTTTG+AGG 0.511066 3_2:-67056725 None:intergenic
ACACATCCTTCTCGCTAAGC+AGG 0.511666 3_2:+67056739 Msa0419150:CDS
TGGTTCAGCGCTATTGGCGT+TGG 0.516474 3_2:+67057201 Msa0419150:CDS
GCCATGGTCGACGTGGCCGA+TGG 0.516822 3_2:-67056435 None:intergenic
TAGTTTGGGACGGAGATTGG+TGG 0.518165 3_2:-67056258 None:intergenic
CAATGATGAGATTGTGTTGA+GGG 0.519612 3_2:+67058176 Msa0419150:three_prime_UTR
ATTCCTTGTTCAATAGCCAC+AGG 0.523741 3_2:-67057826 None:intergenic
ACCGCAGACAAGTTGTATGA+AGG 0.526503 3_2:-67058012 None:intergenic
TGAGGAGCTTCTTGAACTTG+TGG 0.528672 3_2:+67057114 Msa0419150:CDS
AGAGAAGGAGGGAAGACCGT+TGG 0.533076 3_2:+67057862 Msa0419150:CDS
ACAATCGGAATGTCATCTCC+AGG 0.533175 3_2:-67057175 None:intergenic
CTTGACATAATCAGCGTGAC+CGG 0.533310 3_2:-67056633 None:intergenic
TTCAAGAACACAACCACACT+CGG 0.534270 3_2:-67057070 None:intergenic
TTCACCGTCCGTGCCGCCCG+TGG 0.534451 3_2:+67056374 Msa0419150:CDS
TGGGACGGAGATTGGTGGAA+GGG 0.535402 3_2:-67056253 None:intergenic
TTGACATAATCAGCGTGACC+GGG 0.536185 3_2:-67056632 None:intergenic
GGAGGGAAGACCGTTGGAGC+TGG 0.536449 3_2:+67057868 Msa0419150:CDS
GGCCTATAACCAGCAAAGAA+AGG 0.537786 3_2:-67057679 None:intergenic
GGTGAAAGGGGAGGAGCGAG+TGG 0.540841 3_2:-67056357 None:intergenic
AAGCGGAAGTGGTGAAGGTG+TGG 0.545502 3_2:-67056220 None:intergenic
TATGCTCATGTTGATTGCCC+CGG 0.546751 3_2:+67056614 Msa0419150:CDS
AATGGAAGCGGAAGTGGTGA+AGG 0.549887 3_2:-67056225 None:intergenic
GGTGAGAGCAGCGGTTAAAG+TGG 0.550233 3_2:-67056462 None:intergenic
CAAGGATGAGGAGTCGAAGA+TGG 0.551958 3_2:+67057759 Msa0419150:CDS
CAATTCATTTCGATAAGAAG+AGG 0.553893 3_2:+67055999 Msa0419150:five_prime_UTR
GGTTTGAGGCATAGGACCAT+CGG 0.555353 3_2:-67056711 None:intergenic
ACCATGGCTTTGGCTTCTCT+AGG 0.555375 3_2:+67056482 Msa0419150:CDS
TAATTACCTGCTTAGCGAGA+AGG 0.556327 3_2:-67056745 None:intergenic
ACGAGGAGCACTACAGTGAC+CGG 0.557284 3_2:+67057466 Msa0419150:CDS
CCGCAGACAAGTTGTATGAA+GGG 0.558624 3_2:-67058011 None:intergenic
TGAGGTGGAGGATTGTGGAG+GGG 0.559874 3_2:-67056313 None:intergenic
AGCGGAAGTGGTGAAGGTGT+GGG 0.561639 3_2:-67056219 None:intergenic
GGTTTGCTATTAGAGAAGGA+GGG 0.562103 3_2:+67057851 Msa0419150:CDS
AGCGCTGAACCAGAAACAAT+CGG 0.562250 3_2:-67057190 None:intergenic
GGAAGGGGAGGAAATGGAAG+CGG 0.564051 3_2:-67056237 None:intergenic
CATCTCAACATCGGAACCAT+CGG 0.564830 3_2:+67056419 Msa0419150:CDS
TTGGGACGGAGATTGGTGGA+AGG 0.565908 3_2:-67056254 None:intergenic
AGGCATAGGACCATCGGCAC+CGG 0.568713 3_2:-67056705 None:intergenic
GAGTTAGGGTTAGTTTGGGA+CGG 0.569223 3_2:-67056268 None:intergenic
AATTCTCTTCAATTCAACCA+TGG 0.570496 3_2:+67056136 Msa0419150:exon
GATTGATATTCAAAGAGGGA+TGG 0.573204 3_2:+67057567 Msa0419150:CDS
TCCGATAACACCAGCTCCAA+CGG 0.573833 3_2:-67057878 None:intergenic
GAAAGGGGAGGAGCGAGTGG+TGG 0.575537 3_2:-67056354 None:intergenic
TTGCCACCGGAAGAATTGAA+AGG 0.577024 3_2:+67057395 Msa0419150:CDS
GTCCCTGTGGCTATTGAACA+AGG 0.580048 3_2:+67057823 Msa0419150:CDS
GGTTGAGGAAGGAAGAGGAG+AGG 0.580563 3_2:-67056292 None:intergenic
TGCTATGGCTGGTGATAACG+TGG 0.580824 3_2:+67057519 Msa0419150:CDS
AAAGGAGAAGAGAAGAGAAG+AGG 0.581182 3_2:-67056099 None:intergenic
TTAAACGTGGTGATAACGAG+TGG 0.581448 3_2:+67057248 Msa0419150:CDS
TGGCTATTGAACAAGGAATG+AGG 0.586309 3_2:+67057830 Msa0419150:CDS
TCTTTCGGAGTGAAGAGAAG+AGG 0.587110 3_2:-67056058 None:intergenic
TTCTCTTCACTCCGAAAGAG+AGG 0.587313 3_2:+67056062 Msa0419150:five_prime_UTR
TATCATGAATGACAAGGATG+AGG 0.592077 3_2:+67057747 Msa0419150:CDS
GCCCGGTGATCGTGTTAAGA+TGG 0.593994 3_2:+67057786 Msa0419150:CDS
AATTAAGGGTAAAACTGTAA+CGG 0.602876 3_2:-67058204 None:intergenic
GAAGCTCCTCATCATCCACT+TGG 0.605442 3_2:-67057102 None:intergenic
ACCATCTTAACACGATCACC+GGG 0.606257 3_2:-67057787 None:intergenic
ACCATCGGCCACGTCGACCA+TGG 0.607333 3_2:+67056434 Msa0419150:CDS
AGAAGATTGATATTCAAAGA+GGG 0.608439 3_2:+67057563 Msa0419150:CDS
CAACTTACAAAACATCCCGA+TGG 0.612642 3_2:-67058095 None:intergenic
TTAGGTTGGTGTTCCGAGTG+TGG 0.613093 3_2:+67057057 Msa0419150:intron
GCGCTCGAATTTGCCACGGG+CGG 0.613444 3_2:-67056387 None:intergenic
GGTTGTGTTCTTGAACAAGC+AGG 0.616431 3_2:+67057078 Msa0419150:CDS
CTTCTGAAACATTTCCACTC+CGG 0.617102 3_2:-67057485 None:intergenic
GCAGGACCAAGTGGATGATG+AGG 0.618136 3_2:+67057096 Msa0419150:CDS
CCCTTCATACAACTTGTCTG+CGG 0.619908 3_2:+67058011 Msa0419150:three_prime_UTR
CGCGTCACTCCAAAAGTGAG+AGG 0.622139 3_2:+67055970 Msa0419150:five_prime_UTR
ATGGTTCCGATGTTGAGATG+AGG 0.622236 3_2:-67056416 None:intergenic
ACCTAGAGAAGCCAAAGCCA+TGG 0.627081 3_2:-67056483 None:intergenic
AGAAGAAATTGAAATTGCCA+TGG 0.628092 3_2:-67056153 None:intergenic
ACTGGTGCTGCTCAGATGGA+CGG 0.628856 3_2:+67056665 Msa0419150:CDS
CAAAGCCATGGTGAGAGCAG+CGG 0.629976 3_2:-67056471 None:intergenic
TTTAACCGCTGCTCTCACCA+TGG 0.631615 3_2:+67056466 Msa0419150:CDS
GGTCGTGGAACAGTTGCCAC+CGG 0.632950 3_2:+67057382 Msa0419150:CDS
GCTCCTGAAGAACGTGCTCG+TGG 0.633471 3_2:+67056542 Msa0419150:CDS
TTGTTGGTTTGAGGGAAACG+AGG 0.634090 3_2:+67057449 Msa0419150:CDS
GAGTCGAAGATGGTGATGCC+CGG 0.639572 3_2:+67057769 Msa0419150:CDS
CGGTGATCGTGTTAAGATGG+TGG 0.643732 3_2:+67057789 Msa0419150:CDS
TCGTTTCCCTCAAACCAACA+AGG 0.646895 3_2:-67057447 None:intergenic
ACGTGGTGATAACGAGTGGG+TGG 0.647355 3_2:+67057252 Msa0419150:CDS
GCATGAACATCGATCAGAGG+AGG 0.647518 3_2:-67058353 None:intergenic
TGACATAATCAGCGTGACCG+GGG 0.648541 3_2:-67056631 None:intergenic
GGTTGAACTCATTGTCCCTG+TGG 0.649883 3_2:+67057810 Msa0419150:CDS
TTCCTTGTTCAATAGCCACA+GGG 0.659471 3_2:-67057825 None:intergenic
ATACATTCAAACTTAGAGTG+AGG 0.660448 3_2:-67057616 None:intergenic
CTTGAACAAGCAGGACCAAG+TGG 0.660677 3_2:+67057087 Msa0419150:CDS
TAAACGTGGTGATAACGAGT+GGG 0.671761 3_2:+67057249 Msa0419150:CDS
ATAGCATGAACATCGATCAG+AGG 0.673196 3_2:-67058356 None:intergenic
CCACCGGAAGAATTGAAAGG+GGG 0.679857 3_2:+67057398 Msa0419150:CDS
AACGTGGGTTTGTTGCTGAG+AGG 0.684650 3_2:+67057535 Msa0419150:CDS
GCCACCGGAAGAATTGAAAG+GGG 0.695004 3_2:+67057397 Msa0419150:CDS
GTGGTTCTCATGTAAAACTG+AGG 0.696417 3_2:-67057700 None:intergenic
TACATCTATCATGAATGACA+AGG 0.699849 3_2:+67057741 Msa0419150:CDS
TGAATGTTACTCATAATCTG+TGG 0.702965 3_2:+67058236 Msa0419150:three_prime_UTR
TCAATGATGAGATTGTGTTG+AGG 0.708905 3_2:+67058175 Msa0419150:three_prime_UTR
GAGCACTACAGTGACCGGAG+TGG 0.711476 3_2:+67057471 Msa0419150:CDS
GCAAACCCTACTATTAAACG+TGG 0.729265 3_2:+67057235 Msa0419150:CDS
GCTATGGCTGGTGATAACGT+GGG 0.737390 3_2:+67057520 Msa0419150:CDS
TGAAGCAAAGTAGTGCACCG+CGG 0.776250 3_2:+67055947 Msa0419150:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTAGTATTAATACT+AGG - chr3_2:67056815-67056834 None:intergenic 10.0%
!!! TAATACTAATAATTTTAGTT+AGG + chr3_2:67056820-67056839 Msa0419150:intron 10.0%
!!! AATTTCATCGTATTTTTTAG+GGG - chr3_2:67056516-67056535 None:intergenic 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG - chr3_2:67056517-67056536 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG - chr3_2:67056518-67056537 None:intergenic 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG + chr3_2:67056955-67056974 Msa0419150:intron 20.0%
!!! ATGTTTGTTTGTTTTTTGAT+TGG + chr3_2:67057026-67057045 Msa0419150:intron 20.0%
!! GGATAAGATTTATAAACTTA+TGG + chr3_2:67057273-67057292 Msa0419150:CDS 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG + chr3_2:67058041-67058060 Msa0419150:three_prime_UTR 20.0%
!! ATTCAACTCTATCTAATTAA+GGG - chr3_2:67058221-67058240 None:intergenic 20.0%
! TATGTCAAGAATATGATTAC+TGG + chr3_2:67056647-67056666 Msa0419150:CDS 25.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG + chr3_2:67056998-67057017 Msa0419150:intron 25.0%
!!! TTGTTTGTTTTTTGATTGGT+TGG + chr3_2:67057030-67057049 Msa0419150:intron 25.0%
! AGAAGATTGATATTCAAAGA+GGG + chr3_2:67057563-67057582 Msa0419150:CDS 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG + chr3_2:67057636-67057655 Msa0419150:CDS 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG + chr3_2:67058079-67058098 Msa0419150:three_prime_UTR 25.0%
! AATTAAGGGTAAAACTGTAA+CGG - chr3_2:67058207-67058226 None:intergenic 25.0%
! CATTCAACTCTATCTAATTA+AGG - chr3_2:67058222-67058241 None:intergenic 25.0%
TTGAAAAATCTAATCTGCAG+TGG + chr3_2:67055913-67055932 Msa0419150:five_prime_UTR 30.0%
TGAAAAATCTAATCTGCAGT+GGG + chr3_2:67055914-67055933 Msa0419150:five_prime_UTR 30.0%
CAATTCATTTCGATAAGAAG+AGG + chr3_2:67055999-67056018 Msa0419150:five_prime_UTR 30.0%
! GGATTTTGTATTGTATTGTG+TGG - chr3_2:67056040-67056059 None:intergenic 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG - chr3_2:67056076-67056095 None:intergenic 30.0%
AATTCTCTTCAATTCAACCA+TGG + chr3_2:67056136-67056155 Msa0419150:exon 30.0%
AGAAGAAATTGAAATTGCCA+TGG - chr3_2:67056156-67056175 None:intergenic 30.0%
! TTGGTGATTATCGTTATGTA+TGG + chr3_2:67056974-67056993 Msa0419150:intron 30.0%
! ATGTATGGTTTTTGAATCGT+TGG + chr3_2:67056989-67057008 Msa0419150:intron 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG + chr3_2:67057039-67057058 Msa0419150:intron 30.0%
TATCACCACGTTTAATAGTA+GGG - chr3_2:67057243-67057262 None:intergenic 30.0%
TTATCACCACGTTTAATAGT+AGG - chr3_2:67057244-67057263 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG + chr3_2:67057492-67057511 Msa0419150:CDS 30.0%
CAGAAGATTGATATTCAAAG+AGG + chr3_2:67057562-67057581 Msa0419150:CDS 30.0%
ATACATTCAAACTTAGAGTG+AGG - chr3_2:67057619-67057638 None:intergenic 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG + chr3_2:67057643-67057662 Msa0419150:CDS 30.0%
! CATGATAGATGTAACTTTTC+CGG - chr3_2:67057734-67057753 None:intergenic 30.0%
TACATCTATCATGAATGACA+AGG + chr3_2:67057741-67057760 Msa0419150:CDS 30.0%
! TTGTCTGCGGTAATTTTATA+GGG + chr3_2:67058024-67058043 Msa0419150:three_prime_UTR 30.0%
!! TTGGATACTATTTTTCCATC+GGG + chr3_2:67058080-67058099 Msa0419150:three_prime_UTR 30.0%
CTCATCATTGATGCAATTTA+AGG - chr3_2:67058166-67058185 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG + chr3_2:67058236-67058255 Msa0419150:three_prime_UTR 30.0%
! TTGTGTTATCCTCTCACTTT+TGG - chr3_2:67055982-67056001 None:intergenic 35.0%
AATTGAGAGTGAAGAGAGAA+AGG - chr3_2:67056120-67056139 None:intergenic 35.0%
AAAAAGCCTCATCTCAACAT+CGG + chr3_2:67056410-67056429 Msa0419150:CDS 35.0%
GAATTAATGCAACAGCTGTA+TGG + chr3_2:67056897-67056916 Msa0419150:intron 35.0%
TCCTCAATAGCTAGCAAAAA+GGG - chr3_2:67057346-67057365 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG - chr3_2:67057347-67057366 None:intergenic 35.0%
GATTGATATTCAAAGAGGGA+TGG + chr3_2:67057567-67057586 Msa0419150:CDS 35.0%
! TATTCAAAGAGGGATGGTTT+TGG + chr3_2:67057573-67057592 Msa0419150:CDS 35.0%
TATCATGAATGACAAGGATG+AGG + chr3_2:67057747-67057766 Msa0419150:CDS 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG + chr3_2:67057847-67057866 Msa0419150:CDS 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG + chr3_2:67058023-67058042 Msa0419150:three_prime_UTR 35.0%
TCAATGATGAGATTGTGTTG+AGG + chr3_2:67058175-67058194 Msa0419150:three_prime_UTR 35.0%
CAATGATGAGATTGTGTTGA+GGG + chr3_2:67058176-67058195 Msa0419150:three_prime_UTR 35.0%
AAAGGAGAAGAGAAGAGAAG+AGG - chr3_2:67056102-67056121 None:intergenic 40.0%
! TTGTGAGAGTTTGAGTTTGG+TGG - chr3_2:67056186-67056205 None:intergenic 40.0%
! GTGTTGTGAGAGTTTGAGTT+TGG - chr3_2:67056189-67056208 None:intergenic 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG - chr3_2:67056722-67056741 None:intergenic 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG - chr3_2:67056728-67056747 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG - chr3_2:67056748-67056767 None:intergenic 40.0%
GCAACAGCTGTATGGAATTT+AGG + chr3_2:67056905-67056924 Msa0419150:intron 40.0%
! GATTGGTTGGTATCTTAGGT+TGG + chr3_2:67057043-67057062 Msa0419150:intron 40.0%
TTCAAGAACACAACCACACT+CGG - chr3_2:67057073-67057092 None:intergenic 40.0%
AACTTGTGGAGCTTGAAGTT+CGG + chr3_2:67057128-67057147 Msa0419150:CDS 40.0%
GATGACATTCCGATTGTTTC+TGG + chr3_2:67057181-67057200 Msa0419150:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG + chr3_2:67057235-67057254 Msa0419150:CDS 40.0%
! TTAAACGTGGTGATAACGAG+TGG + chr3_2:67057248-67057267 Msa0419150:CDS 40.0%
! TAAACGTGGTGATAACGAGT+GGG + chr3_2:67057249-67057268 Msa0419150:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG - chr3_2:67057319-67057338 None:intergenic 40.0%
GGAGATCTGTTTGTCTTTGA+GGG - chr3_2:67057324-67057343 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG - chr3_2:67057345-67057364 None:intergenic 40.0%
! GAGGATGTGTTTTCAATCAC+TGG + chr3_2:67057361-67057380 Msa0419150:CDS 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG + chr3_2:67057408-67057427 Msa0419150:CDS 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG + chr3_2:67057440-67057459 Msa0419150:CDS 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG + chr3_2:67057441-67057460 Msa0419150:CDS 40.0%
!! CTTCTGAAACATTTCCACTC+CGG - chr3_2:67057488-67057507 None:intergenic 40.0%
! GAAGATTTTGGACGATGCTA+TGG + chr3_2:67057504-67057523 Msa0419150:CDS 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG + chr3_2:67057646-67057665 Msa0419150:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG + chr3_2:67057670-67057689 Msa0419150:CDS 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG + chr3_2:67057677-67057696 Msa0419150:CDS 40.0%
GTGGTTCTCATGTAAAACTG+AGG - chr3_2:67057703-67057722 None:intergenic 40.0%
ATGAGAACCACAGATGTTAC+CGG + chr3_2:67057712-67057731 Msa0419150:CDS 40.0%
! AACTTTTCCGGTAACATCTG+TGG - chr3_2:67057722-67057741 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG - chr3_2:67057828-67057847 None:intergenic 40.0%
ATTCCTTGTTCAATAGCCAC+AGG - chr3_2:67057829-67057848 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG + chr3_2:67057830-67057849 Msa0419150:CDS 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG + chr3_2:67057850-67057869 Msa0419150:CDS 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG + chr3_2:67057851-67057870 Msa0419150:CDS 40.0%
CTGCATCATCACTCTTCAAA+TGG + chr3_2:67057937-67057956 Msa0419150:three_prime_UTR 40.0%
CGGATTGTCTTTAGTCGAAT+TGG + chr3_2:67058061-67058080 Msa0419150:three_prime_UTR 40.0%
CAACTTACAAAACATCCCGA+TGG - chr3_2:67058098-67058117 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG - chr3_2:67058268-67058287 None:intergenic 40.0%
TCTTTCGGAGTGAAGAGAAG+AGG - chr3_2:67056061-67056080 None:intergenic 45.0%
TTCTCTTCACTCCGAAAGAG+AGG + chr3_2:67056062-67056081 Msa0419150:five_prime_UTR 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG - chr3_2:67056271-67056290 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG - chr3_2:67056275-67056294 None:intergenic 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG - chr3_2:67056394-67056413 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG - chr3_2:67056419-67056438 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG + chr3_2:67056419-67056438 Msa0419150:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG - chr3_2:67056454-67056473 None:intergenic 45.0%
! TATGCTCATGTTGATTGCCC+CGG + chr3_2:67056614-67056633 Msa0419150:CDS 45.0%
TTGACATAATCAGCGTGACC+GGG - chr3_2:67056635-67056654 None:intergenic 45.0%
CTTGACATAATCAGCGTGAC+CGG - chr3_2:67056636-67056655 None:intergenic 45.0%
AGCGAGAAGGATGTGTTCTT+TGG - chr3_2:67056735-67056754 None:intergenic 45.0%
GGTTGTGTTCTTGAACAAGC+AGG + chr3_2:67057078-67057097 Msa0419150:CDS 45.0%
TGAGGAGCTTCTTGAACTTG+TGG + chr3_2:67057114-67057133 Msa0419150:CDS 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG + chr3_2:67057129-67057148 Msa0419150:CDS 45.0%
CTCTCGTCTTACGAATTTCC+TGG + chr3_2:67057157-67057176 Msa0419150:CDS 45.0%
ACAATCGGAATGTCATCTCC+AGG - chr3_2:67057178-67057197 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG - chr3_2:67057193-67057212 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG + chr3_2:67057195-67057214 Msa0419150:CDS 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG + chr3_2:67057213-67057232 Msa0419150:CDS 45.0%
GGGAGATCTGTTTGTCTTTG+AGG - chr3_2:67057325-67057344 None:intergenic 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG + chr3_2:67057342-67057361 Msa0419150:CDS 45.0%
! GTGTTTTCAATCACTGGTCG+TGG + chr3_2:67057367-67057386 Msa0419150:CDS 45.0%
TTGCCACCGGAAGAATTGAA+AGG + chr3_2:67057395-67057414 Msa0419150:CDS 45.0%
TGCCACCGGAAGAATTGAAA+GGG + chr3_2:67057396-67057415 Msa0419150:CDS 45.0%
AAGCCCCCTTTCAATTCTTC+CGG - chr3_2:67057404-67057423 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG + chr3_2:67057433-67057452 Msa0419150:CDS 45.0%
TCGTTTCCCTCAAACCAACA+AGG - chr3_2:67057450-67057469 None:intergenic 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG + chr3_2:67057449-67057468 Msa0419150:CDS 45.0%
! ATTTTGGACGATGCTATGGC+TGG + chr3_2:67057508-67057527 Msa0419150:CDS 45.0%
GGCCTATAACCAGCAAAGAA+AGG - chr3_2:67057682-67057701 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG - chr3_2:67057790-67057809 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG - chr3_2:67057791-67057810 None:intergenic 45.0%
! AAGAGTGATGATGCAGCAAC+TGG - chr3_2:67057933-67057952 None:intergenic 45.0%
CCGCAGACAAGTTGTATGAA+GGG - chr3_2:67058014-67058033 None:intergenic 45.0%
CCCTTCATACAACTTGTCTG+CGG + chr3_2:67058011-67058030 Msa0419150:three_prime_UTR 45.0%
ACCGCAGACAAGTTGTATGA+AGG - chr3_2:67058015-67058034 None:intergenic 45.0%
GCCTCATATGCGTGCTATAA+TGG + chr3_2:67058264-67058283 Msa0419150:three_prime_UTR 45.0%
TGAAGCAAAGTAGTGCACCG+CGG + chr3_2:67055947-67055966 Msa0419150:five_prime_UTR 50.0%
AATGGAAGCGGAAGTGGTGA+AGG - chr3_2:67056228-67056247 None:intergenic 50.0%
ATTGGTGGAAGGGGAGGAAA+TGG - chr3_2:67056246-67056265 None:intergenic 50.0%
! TAGTTTGGGACGGAGATTGG+TGG - chr3_2:67056261-67056280 None:intergenic 50.0%
!! GGTTAGTTTGGGACGGAGAT+TGG - chr3_2:67056264-67056283 None:intergenic 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG - chr3_2:67056276-67056295 None:intergenic 50.0%
TTTGCGCTCGAATTTGCCAC+GGG - chr3_2:67056393-67056412 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG + chr3_2:67056466-67056485 Msa0419150:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG + chr3_2:67056482-67056501 Msa0419150:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG - chr3_2:67056486-67056505 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG - chr3_2:67056548-67056567 None:intergenic 50.0%
TGACATAATCAGCGTGACCG+GGG - chr3_2:67056634-67056653 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG + chr3_2:67056661-67056680 Msa0419150:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG - chr3_2:67056714-67056733 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG + chr3_2:67056739-67056758 Msa0419150:CDS 50.0%
!! TTAGGTTGGTGTTCCGAGTG+TGG + chr3_2:67057057-67057076 Msa0419150:intron 50.0%
CTTGAACAAGCAGGACCAAG+TGG + chr3_2:67057087-67057106 Msa0419150:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG - chr3_2:67057105-67057124 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG + chr3_2:67057397-67057416 Msa0419150:CDS 50.0%
CCACCGGAAGAATTGAAAGG+GGG + chr3_2:67057398-67057417 Msa0419150:CDS 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG + chr3_2:67057412-67057431 Msa0419150:CDS 50.0%
! TGCTATGGCTGGTGATAACG+TGG + chr3_2:67057519-67057538 Msa0419150:CDS 50.0%
! GCTATGGCTGGTGATAACGT+GGG + chr3_2:67057520-67057539 Msa0419150:CDS 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG + chr3_2:67057535-67057554 Msa0419150:CDS 50.0%
GAGTGAGGAGTGATAGTTCC+AGG - chr3_2:67057604-67057623 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG + chr3_2:67057759-67057778 Msa0419150:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG + chr3_2:67057789-67057808 Msa0419150:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG + chr3_2:67057810-67057829 Msa0419150:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG + chr3_2:67057823-67057842 Msa0419150:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG + chr3_2:67057877-67057896 Msa0419150:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG - chr3_2:67057881-67057900 None:intergenic 50.0%
CGCGTCACTCCAAAAGTGAG+AGG + chr3_2:67055970-67055989 Msa0419150:five_prime_UTR 55.0%
! TGAAGGTGTGGGTGTGTGGT+GGG - chr3_2:67056211-67056230 None:intergenic 55.0%
! AGCGGAAGTGGTGAAGGTGT+GGG - chr3_2:67056222-67056241 None:intergenic 55.0%
AAGCGGAAGTGGTGAAGGTG+TGG - chr3_2:67056223-67056242 None:intergenic 55.0%
GGAGGAAATGGAAGCGGAAG+TGG - chr3_2:67056234-67056253 None:intergenic 55.0%
GGAAGGGGAGGAAATGGAAG+CGG - chr3_2:67056240-67056259 None:intergenic 55.0%
TGGGACGGAGATTGGTGGAA+GGG - chr3_2:67056256-67056275 None:intergenic 55.0%
TTGGGACGGAGATTGGTGGA+AGG - chr3_2:67056257-67056276 None:intergenic 55.0%
GGAAGAGGAGAGGCGAGTTA+GGG - chr3_2:67056285-67056304 None:intergenic 55.0%
AGGAAGAGGAGAGGCGAGTT+AGG - chr3_2:67056286-67056305 None:intergenic 55.0%
GGTTGAGGAAGGAAGAGGAG+AGG - chr3_2:67056295-67056314 None:intergenic 55.0%
GATTGTGGAGGGGTTGAGGA+AGG - chr3_2:67056306-67056325 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG - chr3_2:67056316-67056335 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG - chr3_2:67056317-67056336 None:intergenic 55.0%
AGTGAGGTGGAGGATTGTGG+AGG - chr3_2:67056318-67056337 None:intergenic 55.0%
!! TTGGTTTGGAGGAGGGAGTG+AGG - chr3_2:67056334-67056353 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+GGG - chr3_2:67056341-67056360 None:intergenic 55.0%
!! AGTGGTGGTTGGTTTGGAGG+AGG - chr3_2:67056342-67056361 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG - chr3_2:67056445-67056464 None:intergenic 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG - chr3_2:67056465-67056484 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG - chr3_2:67056474-67056493 None:intergenic 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG + chr3_2:67056665-67056684 Msa0419150:CDS 55.0%
GGCGCTATTCTCGTTGTCTC+CGG + chr3_2:67056686-67056705 Msa0419150:CDS 55.0%
GCAGGACCAAGTGGATGATG+AGG + chr3_2:67057096-67057115 Msa0419150:CDS 55.0%
TGGTTCAGCGCTATTGGCGT+TGG + chr3_2:67057201-67057220 Msa0419150:CDS 55.0%
! ACGTGGTGATAACGAGTGGG+TGG + chr3_2:67057252-67057271 Msa0419150:CDS 55.0%
CCCCCTTTCAATTCTTCCGG+TGG - chr3_2:67057401-67057420 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG + chr3_2:67057466-67057485 Msa0419150:CDS 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG + chr3_2:67057583-67057602 Msa0419150:CDS 55.0%
! GAGTCGAAGATGGTGATGCC+CGG + chr3_2:67057769-67057788 Msa0419150:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG + chr3_2:67057786-67057805 Msa0419150:CDS 55.0%
AGAGAAGGAGGGAAGACCGT+TGG + chr3_2:67057862-67057881 Msa0419150:CDS 55.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG - chr3_2:67055967-67055986 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG - chr3_2:67056212-67056231 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG - chr3_2:67056215-67056234 None:intergenic 60.0%
ACGGAGATTGGTGGAAGGGG+AGG - chr3_2:67056252-67056271 None:intergenic 60.0%
GGGACGGAGATTGGTGGAAG+GGG - chr3_2:67056255-67056274 None:intergenic 60.0%
GGAGGGGTTGAGGAAGGAAG+AGG - chr3_2:67056300-67056319 None:intergenic 60.0%
GGAGGATTGTGGAGGGGTTG+AGG - chr3_2:67056310-67056329 None:intergenic 60.0%
GGGAGTGAGGTGGAGGATTG+TGG - chr3_2:67056321-67056340 None:intergenic 60.0%
GTTTGGAGGAGGGAGTGAGG+TGG - chr3_2:67056331-67056350 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG - chr3_2:67056345-67056364 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG - chr3_2:67056348-67056367 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG + chr3_2:67056472-67056491 Msa0419150:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG + chr3_2:67056542-67056561 Msa0419150:CDS 60.0%
AGGCATAGGACCATCGGCAC+CGG - chr3_2:67056708-67056727 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG + chr3_2:67057382-67057401 Msa0419150:CDS 60.0%
GAGCACTACAGTGACCGGAG+TGG + chr3_2:67057471-67057490 Msa0419150:CDS 60.0%
TGGAGGAGGGAGTGAGGTGG+AGG - chr3_2:67056328-67056347 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG - chr3_2:67056357-67056376 None:intergenic 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG - chr3_2:67056360-67056379 None:intergenic 65.0%
CGAATTTGCCACGGGCGGCA+CGG - chr3_2:67056385-67056404 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG - chr3_2:67056390-67056409 None:intergenic 65.0%
ACCATCGGCCACGTCGACCA+TGG + chr3_2:67056434-67056453 Msa0419150:CDS 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG + chr3_2:67056695-67056714 Msa0419150:CDS 65.0%
GGAGGGAAGACCGTTGGAGC+TGG + chr3_2:67057868-67057887 Msa0419150:CDS 65.0%
GGGGAGGAGCGAGTGGTGGT+TGG - chr3_2:67056353-67056372 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG - chr3_2:67056369-67056388 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG - chr3_2:67056372-67056391 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG - chr3_2:67056373-67056392 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG - chr3_2:67056381-67056400 None:intergenic 70.0%
GCCATGGTCGACGTGGCCGA+TGG - chr3_2:67056438-67056457 None:intergenic 70.0%
CGGGCGGCACGGACGGTGAA+AGG - chr3_2:67056374-67056393 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG + chr3_2:67056374-67056393 Msa0419150:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67055912 67058371 67055912 ID=Msa0419150;Name=Msa0419150
chr3_2 mRNA 67055912 67058371 67055912 ID=Msa0419150-mRNA-1;Parent=Msa0419150;Name=Msa0419150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|2|456|486
chr3_2 exon 67055912 67056760 67055912 ID=Msa0419150-mRNA-1:exon:15513;Parent=Msa0419150-mRNA-1
chr3_2 exon 67057061 67058371 67057061 ID=Msa0419150-mRNA-1:exon:15514;Parent=Msa0419150-mRNA-1
chr3_2 five_prime_UTR 67055912 67056154 67055912 ID=Msa0419150-mRNA-1:five_prime_utr;Parent=Msa0419150-mRNA-1
chr3_2 CDS 67056155 67056760 67056155 ID=Msa0419150-mRNA-1:cds;Parent=Msa0419150-mRNA-1
chr3_2 CDS 67057061 67057915 67057061 ID=Msa0419150-mRNA-1:cds;Parent=Msa0419150-mRNA-1
chr3_2 three_prime_UTR 67057916 67058371 67057916 ID=Msa0419150-mRNA-1:three_prime_utr;Parent=Msa0419150-mRNA-1
Gene Sequence

>Msa0419150

ATGGCAATTTCAATTTCTTCTTCATCTTCCACCAAACTCAAACTCTCACAACACCCACCACACACCCACACCTTCACCACTTCCGCTTCCATTTCCTCCCCTTCCACCAATCTCCGTCCCAAACTAACCCTAACTCGCCTCTCCTCTTCCTTCCTCAACCCCTCCACAATCCTCCACCTCACTCCCTCCTCCAAACCAACCACCACTCGCTCCTCCCCTTTCACCGTCCGTGCCGCCCGTGGCAAATTCGAGCGCAAAAAGCCTCATCTCAACATCGGAACCATCGGCCACGTCGACCATGGCAAAACCACTTTAACCGCTGCTCTCACCATGGCTTTGGCTTCTCTAGGTAACAGTGCCCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAACGTGCTCGTGGTATTACAATTAATACTGCTACTGTTGAATATGAGACTGAAACTCGTCATTATGCTCATGTTGATTGCCCCGGTCACGCTGATTATGTCAAGAATATGATTACTGGTGCTGCTCAGATGGACGGCGCTATTCTCGTTGTCTCCGGTGCCGATGGTCCTATGCCTCAAACCAAAGAACACATCCTTCTCGCTAAGCAGGTTGGTGTTCCGAGTGTGGTTGTGTTCTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGAGCTTGAAGTTCGGGAGCTACTCTCGTCTTACGAATTTCCTGGAGATGACATTCCGATTGTTTCTGGTTCAGCGCTATTGGCGTTGGAAGCATTAGTGGCAAACCCTACTATTAAACGTGGTGATAACGAGTGGGTGGATAAGATTTATAAACTTATGGATGAAGTTGACAACTATATACCAATCCCTCAAAGACAAACAGATCTCCCCTTTTTGCTAGCTATTGAGGATGTGTTTTCAATCACTGGTCGTGGAACAGTTGCCACCGGAAGAATTGAAAGGGGGCTTGTTAAGGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGGAAACGAGGAGCACTACAGTGACCGGAGTGGAAATGTTTCAGAAGATTTTGGACGATGCTATGGCTGGTGATAACGTGGGTTTGTTGCTGAGAGGTGTTCAGAAGATTGATATTCAAAGAGGGATGGTTTTGGCTAAGCCTGGAACTATCACTCCTCACTCTAAGTTTGAATGTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACATTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTACATGAGAACCACAGATGTTACCGGAAAAGTTACATCTATCATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA
Protein sequence

>Msa0419150

MAISISSSSSTKLKLSQHPPHTHTFTTSASISSPSTNLRPKLTLTRLSSSFLNPSTILHLTPSSKPTTTRSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALVANPTIKRGDNEWVDKIYKLMDEVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGLVKVGDVVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKIDIQRGMVLAKPGTITPHSKFECIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE*