AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754880 MtrunA17_Chr5g0399711 81.818 154 20 3 1 151 1 149 2.76e-83 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754880 AT4G17560.1 48.352 91 33 3 62 151 68 145 4.01e-18 79.0
Msa0754880 AT5G47190.1 38.971 136 62 3 31 151 20 149 2.28e-16 74.3

Find 61 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACGGTCTTCCTCCTTA+TGG 0.262331 5_2:+8576776 Msa0754880:exon
CTTCTTCGACCTCAATTTCA+TGG 0.303030 5_2:+8577045 Msa0754880:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 5_2:+8577190 Msa0754880:CDS
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 5_2:+8576797 Msa0754880:CDS
GTAACTTACCCTTCATTTCC+AGG 0.329154 5_2:+8577021 Msa0754880:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 5_2:+8577259 Msa0754880:CDS
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 5_2:-8577120 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 5_2:-8576969 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 5_2:+8577260 Msa0754880:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 5_2:-8577155 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 5_2:-8576954 None:intergenic
GGATAATGCTGATGAAGTTT+CGG 0.394551 5_2:+8577166 Msa0754880:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 5_2:+8577184 Msa0754880:CDS
CCACAATATCTCCAGTCCTT+AGG 0.437951 5_2:-8578313 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 5_2:+8578252 Msa0754880:intron
ACGAGAAGCGAGGGTGGAAG+CGG 0.476314 5_2:-8577000 None:intergenic
TTTCCTCTTCTTCCTCTCTA+CGG 0.477516 5_2:+8576761 Msa0754880:five_prime_UTR
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 5_2:-8577030 None:intergenic
GAAATACTTGGGAAGCCATA+AGG 0.484706 5_2:-8576791 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 5_2:+8577145 Msa0754880:CDS
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 5_2:-8577237 None:intergenic
CAATGTCCTCCAACAAAGCT+AGG 0.507926 5_2:+8576960 Msa0754880:CDS
TTTGGATTCTGCATCTGAGG+TGG 0.512535 5_2:+8577208 Msa0754880:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 5_2:-8578308 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 5_2:+8578313 Msa0754880:CDS
CAGTCCTTCCTTCGCACGTG+TGG 0.528105 5_2:+8576686 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 5_2:-8577126 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 5_2:+8577211 Msa0754880:CDS
TAACTTACCCTTCATTTCCA+GGG 0.543085 5_2:+8577022 Msa0754880:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 5_2:+8578325 Msa0754880:CDS
TATCCGTTCCACACGTGCGA+AGG 0.544362 5_2:-8576694 None:intergenic
TTAAGCTTGGTGATGTTATG+GGG 0.548890 5_2:+8577261 Msa0754880:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 5_2:-8577039 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 5_2:-8577054 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 5_2:-8576966 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 5_2:+8578302 Msa0754880:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 5_2:-8577095 None:intergenic
CTTCCTTCGCACGTGTGGAA+CGG 0.567537 5_2:+8576691 Msa0754880:five_prime_UTR
AGACAAACTCGTGTTAAGCT+TGG 0.574922 5_2:+8577248 Msa0754880:CDS
AGACCGTAGAGAGGAAGAAG+AGG 0.581223 5_2:-8576764 None:intergenic
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 5_2:-8578303 None:intergenic
TGTGGAACGGATAGAAGAAA+CGG 0.583971 5_2:+8576704 Msa0754880:five_prime_UTR
AGCTTAACACGAGTTTGTCT+AGG 0.586483 5_2:-8577245 None:intergenic
CGTTCCACACGTGCGAAGGA+AGG 0.586778 5_2:-8576690 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 5_2:+8578297 Msa0754880:CDS
TAAGTTACGAGAAGCGAGGG+TGG 0.596133 5_2:-8577006 None:intergenic
TGTGCAGATATTGCATAAGA+GGG 0.596182 5_2:+8578253 Msa0754880:intron
AAACTAGGTTTAGCAATGAG+AGG 0.610020 5_2:-8577080 None:intergenic
GGGTAAGTTACGAGAAGCGA+GGG 0.612377 5_2:-8577009 None:intergenic
GATGAAGTTTCGGAAACTGA+AGG 0.614399 5_2:+8577176 Msa0754880:CDS
TCGGTTTCTCTCTTACCTTG+CGG 0.621815 5_2:+8578734 Msa0754880:CDS
TAAGGAGGAAGACCGTAGAG+AGG 0.625148 5_2:-8576773 None:intergenic
GAGAGCTGATTCCAATTCCG+AGG 0.627170 5_2:+8577109 Msa0754880:CDS
AGCAAGCAGTGTATACCGCA+AGG 0.627351 5_2:-8578749 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 5_2:-8577077 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 5_2:-8577242 None:intergenic
ATACTTGGGAAGCCATAAGG+AGG 0.658948 5_2:-8576788 None:intergenic
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 5_2:+8578279 Msa0754880:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 5_2:+8577262 Msa0754880:CDS
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 5_2:-8577029 None:intergenic
AGGGTAAGTTACGAGAAGCG+AGG 0.688532 5_2:-8577010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTTATAATAGAAAATT+TGG + chr5_2:8577564-8577583 Msa0754880:intron 15.0%
!!! CTTTTAAATGAGATATTTTT+CGG + chr5_2:8578715-8578734 Msa0754880:CDS 15.0%
!! TATGCTTATAATAGAAAATT+TGG + chr5_2:8577564-8577583 Msa0754880:intron 15.0%
!!! CTTTTAAATGAGATATTTTT+CGG + chr5_2:8578715-8578734 Msa0754880:CDS 15.0%
!!! AAGTATTTGTTACAATGAAT+TGG - chr5_2:8576865-8576884 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG - chr5_2:8577507-8577526 None:intergenic 20.0%
!! AATATTACTTACACATGAAT+AGG + chr5_2:8577608-8577627 Msa0754880:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG - chr5_2:8577848-8577867 None:intergenic 20.0%
!! CAAAAATCCAAATTCTAATA+TGG - chr5_2:8577909-8577928 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG + chr5_2:8577907-8577926 Msa0754880:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG - chr5_2:8578189-8578208 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG + chr5_2:8578188-8578207 Msa0754880:intron 20.0%
!! TCAAATTAATATGTTGAAGA+AGG + chr5_2:8578383-8578402 Msa0754880:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG + chr5_2:8578384-8578403 Msa0754880:intron 20.0%
!! ATAAGATGATATGATTTATG+TGG + chr5_2:8578409-8578428 Msa0754880:intron 20.0%
!!! AAGTATTTGTTACAATGAAT+TGG - chr5_2:8576865-8576884 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG - chr5_2:8577507-8577526 None:intergenic 20.0%
!! AATATTACTTACACATGAAT+AGG + chr5_2:8577608-8577627 Msa0754880:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG - chr5_2:8577848-8577867 None:intergenic 20.0%
!! CAAAAATCCAAATTCTAATA+TGG - chr5_2:8577909-8577928 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG + chr5_2:8577907-8577926 Msa0754880:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG - chr5_2:8578189-8578208 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG + chr5_2:8578188-8578207 Msa0754880:intron 20.0%
!! TCAAATTAATATGTTGAAGA+AGG + chr5_2:8578383-8578402 Msa0754880:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG + chr5_2:8578384-8578403 Msa0754880:intron 20.0%
!! ATAAGATGATATGATTTATG+TGG + chr5_2:8578409-8578428 Msa0754880:intron 20.0%
! AAAAACCTGAAGAAATACTT+GGG - chr5_2:8576805-8576824 None:intergenic 25.0%
! AAAAAACCTGAAGAAATACT+TGG - chr5_2:8576806-8576825 None:intergenic 25.0%
! TTAATAACAGTATAGAGTCA+TGG - chr5_2:8577301-8577320 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG + chr5_2:8577524-8577543 Msa0754880:intron 25.0%
! TACAACACATTTAATGTGTT+GGG - chr5_2:8577985-8578004 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG - chr5_2:8578078-8578097 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG + chr5_2:8578078-8578097 Msa0754880:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG + chr5_2:8578086-8578105 Msa0754880:intron 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG - chr5_2:8578190-8578209 None:intergenic 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG + chr5_2:8578187-8578206 Msa0754880:intron 25.0%
! AAAAACCTGAAGAAATACTT+GGG - chr5_2:8576805-8576824 None:intergenic 25.0%
! AAAAAACCTGAAGAAATACT+TGG - chr5_2:8576806-8576825 None:intergenic 25.0%
! TTAATAACAGTATAGAGTCA+TGG - chr5_2:8577301-8577320 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG + chr5_2:8577524-8577543 Msa0754880:intron 25.0%
! TACAACACATTTAATGTGTT+GGG - chr5_2:8577985-8578004 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG - chr5_2:8578078-8578097 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG + chr5_2:8578078-8578097 Msa0754880:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG + chr5_2:8578086-8578105 Msa0754880:intron 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG - chr5_2:8578190-8578209 None:intergenic 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG + chr5_2:8578187-8578206 Msa0754880:intron 25.0%
TGGATAATAATGAGATGAGA+GGG - chr5_2:8576845-8576864 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG - chr5_2:8576846-8576865 None:intergenic 30.0%
AAATGAAATCTCATGTGTGT+TGG - chr5_2:8577395-8577414 None:intergenic 30.0%
ATTACTTACACATGAATAGG+AGG + chr5_2:8577611-8577630 Msa0754880:intron 30.0%
TATGAGCTCTCATTTAACAA+AGG - chr5_2:8577886-8577905 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG + chr5_2:8577899-8577918 Msa0754880:intron 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG - chr5_2:8577943-8577962 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG + chr5_2:8577942-8577961 Msa0754880:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG - chr5_2:8577968-8577987 None:intergenic 30.0%
CTACAACACATTTAATGTGT+TGG - chr5_2:8577986-8578005 None:intergenic 30.0%
CATTTCATTTGCCATCATTT+CGG - chr5_2:8578011-8578030 None:intergenic 30.0%
ATCTTCCAACATATTTACCT+TGG + chr5_2:8578058-8578077 Msa0754880:intron 30.0%
TTGATCCAAGGTAAATATGT+TGG - chr5_2:8578066-8578085 None:intergenic 30.0%
AGATATTGTGGAAATCAGAT+TGG + chr5_2:8578325-8578344 Msa0754880:CDS 30.0%
ACTGTCAATTATTCTGTAGA+TGG - chr5_2:8578628-8578647 None:intergenic 30.0%
TGGATAATAATGAGATGAGA+GGG - chr5_2:8576845-8576864 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG - chr5_2:8576846-8576865 None:intergenic 30.0%
AAATGAAATCTCATGTGTGT+TGG - chr5_2:8577395-8577414 None:intergenic 30.0%
ATTACTTACACATGAATAGG+AGG + chr5_2:8577611-8577630 Msa0754880:intron 30.0%
TATGAGCTCTCATTTAACAA+AGG - chr5_2:8577886-8577905 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG + chr5_2:8577899-8577918 Msa0754880:intron 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG - chr5_2:8577943-8577962 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG + chr5_2:8577942-8577961 Msa0754880:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG - chr5_2:8577968-8577987 None:intergenic 30.0%
CTACAACACATTTAATGTGT+TGG - chr5_2:8577986-8578005 None:intergenic 30.0%
CATTTCATTTGCCATCATTT+CGG - chr5_2:8578011-8578030 None:intergenic 30.0%
ATCTTCCAACATATTTACCT+TGG + chr5_2:8578058-8578077 Msa0754880:intron 30.0%
TTGATCCAAGGTAAATATGT+TGG - chr5_2:8578066-8578085 None:intergenic 30.0%
AGATATTGTGGAAATCAGAT+TGG + chr5_2:8578325-8578344 Msa0754880:CDS 30.0%
ACTGTCAATTATTCTGTAGA+TGG - chr5_2:8578628-8578647 None:intergenic 30.0%
! TTTGTTGGAGGACATTGATT+AGG - chr5_2:8576957-8576976 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG + chr5_2:8577022-8577041 Msa0754880:CDS 35.0%
AAACTAGGTTTAGCAATGAG+AGG - chr5_2:8577083-8577102 None:intergenic 35.0%
TCAGCTCTCACAATAAAACT+AGG - chr5_2:8577098-8577117 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG - chr5_2:8577129-8577148 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG + chr5_2:8577145-8577164 Msa0754880:CDS 35.0%
GGATAATGCTGATGAAGTTT+CGG + chr5_2:8577166-8577185 Msa0754880:CDS 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG + chr5_2:8577259-8577278 Msa0754880:CDS 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG + chr5_2:8577260-8577279 Msa0754880:CDS 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG + chr5_2:8577261-8577280 Msa0754880:CDS 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG - chr5_2:8577665-8577684 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG - chr5_2:8577683-8577702 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG - chr5_2:8577712-8577731 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG - chr5_2:8577741-8577760 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG - chr5_2:8577742-8577761 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+CGG - chr5_2:8577788-8577807 None:intergenic 35.0%
TTATAAGGTCTGGATGCATT+TGG - chr5_2:8577933-8577952 None:intergenic 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG - chr5_2:8577948-8577967 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG + chr5_2:8578009-8578028 Msa0754880:intron 35.0%
!! TCAATGAACTCTGAAATGCA+TGG + chr5_2:8578223-8578242 Msa0754880:intron 35.0%
TTGTGCAGATATTGCATAAG+AGG + chr5_2:8578252-8578271 Msa0754880:intron 35.0%
TGTGCAGATATTGCATAAGA+GGG + chr5_2:8578253-8578272 Msa0754880:intron 35.0%
! TTTGTTGGAGGACATTGATT+AGG - chr5_2:8576957-8576976 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG + chr5_2:8577022-8577041 Msa0754880:CDS 35.0%
AAACTAGGTTTAGCAATGAG+AGG - chr5_2:8577083-8577102 None:intergenic 35.0%
TCAGCTCTCACAATAAAACT+AGG - chr5_2:8577098-8577117 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG - chr5_2:8577129-8577148 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG + chr5_2:8577145-8577164 Msa0754880:CDS 35.0%
GGATAATGCTGATGAAGTTT+CGG + chr5_2:8577166-8577185 Msa0754880:CDS 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG + chr5_2:8577259-8577278 Msa0754880:CDS 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG + chr5_2:8577260-8577279 Msa0754880:CDS 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG + chr5_2:8577261-8577280 Msa0754880:CDS 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG - chr5_2:8577665-8577684 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG - chr5_2:8577683-8577702 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG - chr5_2:8577712-8577731 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG - chr5_2:8577741-8577760 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG - chr5_2:8577742-8577761 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+CGG - chr5_2:8577788-8577807 None:intergenic 35.0%
TTATAAGGTCTGGATGCATT+TGG - chr5_2:8577933-8577952 None:intergenic 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG - chr5_2:8577948-8577967 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG + chr5_2:8578009-8578028 Msa0754880:intron 35.0%
!! TCAATGAACTCTGAAATGCA+TGG + chr5_2:8578223-8578242 Msa0754880:intron 35.0%
TTGTGCAGATATTGCATAAG+AGG + chr5_2:8578252-8578271 Msa0754880:intron 35.0%
TGTGCAGATATTGCATAAGA+GGG + chr5_2:8578253-8578272 Msa0754880:intron 35.0%
TGTGGAACGGATAGAAGAAA+CGG + chr5_2:8576704-8576723 Msa0754880:five_prime_UTR 40.0%
TTTCCTCTTCTTCCTCTCTA+CGG + chr5_2:8576761-8576780 Msa0754880:five_prime_UTR 40.0%
GAAATACTTGGGAAGCCATA+AGG - chr5_2:8576794-8576813 None:intergenic 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG - chr5_2:8576972-8576991 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG + chr5_2:8577021-8577040 Msa0754880:CDS 40.0%
CTTCTTCGACCTCAATTTCA+TGG + chr5_2:8577045-8577064 Msa0754880:CDS 40.0%
ATTACAGCGCCATGAAATTG+AGG - chr5_2:8577057-8577076 None:intergenic 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG - chr5_2:8577123-8577142 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG + chr5_2:8577176-8577195 Msa0754880:CDS 40.0%
! AACTGAAGGAGAACAGGTTT+TGG + chr5_2:8577190-8577209 Msa0754880:CDS 40.0%
TTAACACGAGTTTGTCTAGG+CGG - chr5_2:8577245-8577264 None:intergenic 40.0%
AGCTTAACACGAGTTTGTCT+AGG - chr5_2:8577248-8577267 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG + chr5_2:8577248-8577267 Msa0754880:CDS 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG + chr5_2:8577262-8577281 Msa0754880:CDS 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr5_2:8577688-8577707 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG + chr5_2:8577685-8577704 Msa0754880:intron 40.0%
AACACAACATTCATGGACCT+AGG + chr5_2:8577692-8577711 Msa0754880:intron 40.0%
CATTGCTATGCATAACCCTT+TGG + chr5_2:8577723-8577742 Msa0754880:intron 40.0%
CCCTTTGGATTCTATGTAGA+AGG + chr5_2:8577738-8577757 Msa0754880:intron 40.0%
!! CCGAAAGTGTCAAAAGCAAA+TGG + chr5_2:8577785-8577804 Msa0754880:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG + chr5_2:8577820-8577839 Msa0754880:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG - chr5_2:8577824-8577843 None:intergenic 40.0%
GGTACCAATTCATCTCTGTA+AGG - chr5_2:8577827-8577846 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG + chr5_2:8578017-8578036 Msa0754880:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG + chr5_2:8578020-8578039 Msa0754880:intron 40.0%
TGGAAGATCTGCCTTAATTG+CGG - chr5_2:8578046-8578065 None:intergenic 40.0%
AACAAAAAAGGCGAAGCTGA+GGG - chr5_2:8578554-8578573 None:intergenic 40.0%
TCCAAGGAGACCAACAAAAA+AGG - chr5_2:8578566-8578585 None:intergenic 40.0%
GAAAGCCAAGCAAAAATCCA+AGG - chr5_2:8578582-8578601 None:intergenic 40.0%
TGTGGAACGGATAGAAGAAA+CGG + chr5_2:8576704-8576723 Msa0754880:five_prime_UTR 40.0%
TTTCCTCTTCTTCCTCTCTA+CGG + chr5_2:8576761-8576780 Msa0754880:five_prime_UTR 40.0%
GAAATACTTGGGAAGCCATA+AGG - chr5_2:8576794-8576813 None:intergenic 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG - chr5_2:8576972-8576991 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG + chr5_2:8577021-8577040 Msa0754880:CDS 40.0%
CTTCTTCGACCTCAATTTCA+TGG + chr5_2:8577045-8577064 Msa0754880:CDS 40.0%
ATTACAGCGCCATGAAATTG+AGG - chr5_2:8577057-8577076 None:intergenic 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG - chr5_2:8577123-8577142 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG + chr5_2:8577176-8577195 Msa0754880:CDS 40.0%
! AACTGAAGGAGAACAGGTTT+TGG + chr5_2:8577190-8577209 Msa0754880:CDS 40.0%
TTAACACGAGTTTGTCTAGG+CGG - chr5_2:8577245-8577264 None:intergenic 40.0%
AGCTTAACACGAGTTTGTCT+AGG - chr5_2:8577248-8577267 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG + chr5_2:8577248-8577267 Msa0754880:CDS 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG + chr5_2:8577262-8577281 Msa0754880:CDS 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr5_2:8577688-8577707 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG + chr5_2:8577685-8577704 Msa0754880:intron 40.0%
AACACAACATTCATGGACCT+AGG + chr5_2:8577692-8577711 Msa0754880:intron 40.0%
CATTGCTATGCATAACCCTT+TGG + chr5_2:8577723-8577742 Msa0754880:intron 40.0%
CCCTTTGGATTCTATGTAGA+AGG + chr5_2:8577738-8577757 Msa0754880:intron 40.0%
!! CCGAAAGTGTCAAAAGCAAA+TGG + chr5_2:8577785-8577804 Msa0754880:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG + chr5_2:8577820-8577839 Msa0754880:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG - chr5_2:8577824-8577843 None:intergenic 40.0%
GGTACCAATTCATCTCTGTA+AGG - chr5_2:8577827-8577846 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG + chr5_2:8578017-8578036 Msa0754880:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG + chr5_2:8578020-8578039 Msa0754880:intron 40.0%
TGGAAGATCTGCCTTAATTG+CGG - chr5_2:8578046-8578065 None:intergenic 40.0%
AACAAAAAAGGCGAAGCTGA+GGG - chr5_2:8578554-8578573 None:intergenic 40.0%
TCCAAGGAGACCAACAAAAA+AGG - chr5_2:8578566-8578585 None:intergenic 40.0%
GAAAGCCAAGCAAAAATCCA+AGG - chr5_2:8578582-8578601 None:intergenic 40.0%
ATACTTGGGAAGCCATAAGG+AGG - chr5_2:8576791-8576810 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG + chr5_2:8576797-8576816 Msa0754880:CDS 45.0%
CAATGTCCTCCAACAAAGCT+AGG + chr5_2:8576960-8576979 Msa0754880:CDS 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG - chr5_2:8576969-8576988 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG - chr5_2:8577032-8577051 None:intergenic 45.0%
CTAGGTTTAGCAATGAGAGG+AGG - chr5_2:8577080-8577099 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG - chr5_2:8577158-8577177 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG + chr5_2:8577184-8577203 Msa0754880:CDS 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG + chr5_2:8577205-8577224 Msa0754880:CDS 45.0%
TTTGGATTCTGCATCTGAGG+TGG + chr5_2:8577208-8577227 Msa0754880:CDS 45.0%
! GCACTGACACTTCAGATCAA+AGG + chr5_2:8577364-8577383 Msa0754880:intron 45.0%
ACACAAACACGAACACCAGA+CGG - chr5_2:8577446-8577465 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG + chr5_2:8577618-8577637 Msa0754880:intron 45.0%
TGCCATCCAAAAAGGTCTAG+CGG - chr5_2:8577657-8577676 None:intergenic 45.0%
TTGCAGCTTCAGATGAAGTG+AGG + chr5_2:8578279-8578298 Msa0754880:CDS 45.0%
ATATCTCCAGTCCTTAGGTC+AGG - chr5_2:8578311-8578330 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG - chr5_2:8578316-8578335 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG + chr5_2:8578313-8578332 Msa0754880:CDS 45.0%
CAACAAAAAAGGCGAAGCTG+AGG - chr5_2:8578555-8578574 None:intergenic 45.0%
!!! CTCAGCTTCGCCTTTTTTGT+TGG + chr5_2:8578553-8578572 Msa0754880:intron 45.0%
!!! GCCTTTTTTGTTGGTCTCCT+TGG + chr5_2:8578562-8578581 Msa0754880:intron 45.0%
! GGTCTCCTTGGATTTTTGCT+TGG + chr5_2:8578574-8578593 Msa0754880:intron 45.0%
GAAAGTCTGCATGCATGCAA+AGG - chr5_2:8578659-8578678 None:intergenic 45.0%
TCGGTTTCTCTCTTACCTTG+CGG + chr5_2:8578734-8578753 Msa0754880:CDS 45.0%
ATACTTGGGAAGCCATAAGG+AGG - chr5_2:8576791-8576810 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG + chr5_2:8576797-8576816 Msa0754880:CDS 45.0%
CAATGTCCTCCAACAAAGCT+AGG + chr5_2:8576960-8576979 Msa0754880:CDS 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG - chr5_2:8576969-8576988 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG - chr5_2:8577032-8577051 None:intergenic 45.0%
CTAGGTTTAGCAATGAGAGG+AGG - chr5_2:8577080-8577099 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG - chr5_2:8577158-8577177 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG + chr5_2:8577184-8577203 Msa0754880:CDS 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG + chr5_2:8577205-8577224 Msa0754880:CDS 45.0%
TTTGGATTCTGCATCTGAGG+TGG + chr5_2:8577208-8577227 Msa0754880:CDS 45.0%
! GCACTGACACTTCAGATCAA+AGG + chr5_2:8577364-8577383 Msa0754880:intron 45.0%
ACACAAACACGAACACCAGA+CGG - chr5_2:8577446-8577465 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG + chr5_2:8577618-8577637 Msa0754880:intron 45.0%
TGCCATCCAAAAAGGTCTAG+CGG - chr5_2:8577657-8577676 None:intergenic 45.0%
TTGCAGCTTCAGATGAAGTG+AGG + chr5_2:8578279-8578298 Msa0754880:CDS 45.0%
ATATCTCCAGTCCTTAGGTC+AGG - chr5_2:8578311-8578330 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG - chr5_2:8578316-8578335 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG + chr5_2:8578313-8578332 Msa0754880:CDS 45.0%
CAACAAAAAAGGCGAAGCTG+AGG - chr5_2:8578555-8578574 None:intergenic 45.0%
!!! CTCAGCTTCGCCTTTTTTGT+TGG + chr5_2:8578553-8578572 Msa0754880:intron 45.0%
!!! GCCTTTTTTGTTGGTCTCCT+TGG + chr5_2:8578562-8578581 Msa0754880:intron 45.0%
! GGTCTCCTTGGATTTTTGCT+TGG + chr5_2:8578574-8578593 Msa0754880:intron 45.0%
GAAAGTCTGCATGCATGCAA+AGG - chr5_2:8578659-8578678 None:intergenic 45.0%
TCGGTTTCTCTCTTACCTTG+CGG + chr5_2:8578734-8578753 Msa0754880:CDS 45.0%
AGACCGTAGAGAGGAAGAAG+AGG - chr5_2:8576767-8576786 None:intergenic 50.0%
TAAGGAGGAAGACCGTAGAG+AGG - chr5_2:8576776-8576795 None:intergenic 50.0%
CTCTACGGTCTTCCTCCTTA+TGG + chr5_2:8576776-8576795 Msa0754880:exon 50.0%
TAAGTTACGAGAAGCGAGGG+TGG - chr5_2:8577009-8577028 None:intergenic 50.0%
GGGTAAGTTACGAGAAGCGA+GGG - chr5_2:8577012-8577031 None:intergenic 50.0%
AGGGTAAGTTACGAGAAGCG+AGG - chr5_2:8577013-8577032 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG - chr5_2:8577033-8577052 None:intergenic 50.0%
AATTGAGGTCGAAGAAGCCC+TGG - chr5_2:8577042-8577061 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG + chr5_2:8577109-8577128 Msa0754880:CDS 50.0%
CACATGAATAGGAGGCAAGC+GGG + chr5_2:8577619-8577638 Msa0754880:intron 50.0%
GGTCAACATCCTCTGATGCT+AGG + chr5_2:8577759-8577778 Msa0754880:intron 50.0%
TTTCGGCTTCCTAGCATCAG+AGG - chr5_2:8577771-8577790 None:intergenic 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG + chr5_2:8577997-8578016 Msa0754880:intron 50.0%
CCTTAATTGCGGCCACCTTT+AGG - chr5_2:8578035-8578054 None:intergenic 50.0%
CCTAAAGGTGGCCGCAATTA+AGG + chr5_2:8578032-8578051 Msa0754880:intron 50.0%
AGCAAGCAGTGTATACCGCA+AGG - chr5_2:8578752-8578771 None:intergenic 50.0%
AGACCGTAGAGAGGAAGAAG+AGG - chr5_2:8576767-8576786 None:intergenic 50.0%
TAAGGAGGAAGACCGTAGAG+AGG - chr5_2:8576776-8576795 None:intergenic 50.0%
CTCTACGGTCTTCCTCCTTA+TGG + chr5_2:8576776-8576795 Msa0754880:exon 50.0%
TAAGTTACGAGAAGCGAGGG+TGG - chr5_2:8577009-8577028 None:intergenic 50.0%
GGGTAAGTTACGAGAAGCGA+GGG - chr5_2:8577012-8577031 None:intergenic 50.0%
AGGGTAAGTTACGAGAAGCG+AGG - chr5_2:8577013-8577032 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG - chr5_2:8577033-8577052 None:intergenic 50.0%
AATTGAGGTCGAAGAAGCCC+TGG - chr5_2:8577042-8577061 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG + chr5_2:8577109-8577128 Msa0754880:CDS 50.0%
CACATGAATAGGAGGCAAGC+GGG + chr5_2:8577619-8577638 Msa0754880:intron 50.0%
GGTCAACATCCTCTGATGCT+AGG + chr5_2:8577759-8577778 Msa0754880:intron 50.0%
TTTCGGCTTCCTAGCATCAG+AGG - chr5_2:8577771-8577790 None:intergenic 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG + chr5_2:8577997-8578016 Msa0754880:intron 50.0%
CCTTAATTGCGGCCACCTTT+AGG - chr5_2:8578035-8578054 None:intergenic 50.0%
CCTAAAGGTGGCCGCAATTA+AGG + chr5_2:8578032-8578051 Msa0754880:intron 50.0%
AGCAAGCAGTGTATACCGCA+AGG - chr5_2:8578752-8578771 None:intergenic 50.0%
CTTCCTTCGCACGTGTGGAA+CGG + chr5_2:8576691-8576710 Msa0754880:five_prime_UTR 55.0%
TATCCGTTCCACACGTGCGA+AGG - chr5_2:8576697-8576716 None:intergenic 55.0%
! GGATTCTGCATCTGAGGTGG+AGG + chr5_2:8577211-8577230 Msa0754880:CDS 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG - chr5_2:8577240-8577259 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG + chr5_2:8577652-8577671 Msa0754880:intron 55.0%
TGAGGACCACTCCTGACCTA+AGG + chr5_2:8578297-8578316 Msa0754880:CDS 55.0%
ACCACTCCTGACCTAAGGAC+TGG + chr5_2:8578302-8578321 Msa0754880:CDS 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG - chr5_2:8578306-8578325 None:intergenic 55.0%
CTTCCTTCGCACGTGTGGAA+CGG + chr5_2:8576691-8576710 Msa0754880:five_prime_UTR 55.0%
TATCCGTTCCACACGTGCGA+AGG - chr5_2:8576697-8576716 None:intergenic 55.0%
! GGATTCTGCATCTGAGGTGG+AGG + chr5_2:8577211-8577230 Msa0754880:CDS 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG - chr5_2:8577240-8577259 None:intergenic 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG + chr5_2:8577652-8577671 Msa0754880:intron 55.0%
TGAGGACCACTCCTGACCTA+AGG + chr5_2:8578297-8578316 Msa0754880:CDS 55.0%
ACCACTCCTGACCTAAGGAC+TGG + chr5_2:8578302-8578321 Msa0754880:CDS 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG - chr5_2:8578306-8578325 None:intergenic 55.0%
CGTTCCACACGTGCGAAGGA+AGG - chr5_2:8576693-8576712 None:intergenic 60.0%
ACGAGAAGCGAGGGTGGAAG+CGG - chr5_2:8577003-8577022 None:intergenic 60.0%
CGAGAGTTGTCGTGTCCGTC+TGG + chr5_2:8577428-8577447 Msa0754880:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG + chr5_2:8577648-8577667 Msa0754880:intron 60.0%
GCGAAGCTGAGGGAAAAGCC+AGG - chr5_2:8578544-8578563 None:intergenic 60.0%
CGTTCCACACGTGCGAAGGA+AGG - chr5_2:8576693-8576712 None:intergenic 60.0%
ACGAGAAGCGAGGGTGGAAG+CGG - chr5_2:8577003-8577022 None:intergenic 60.0%
CGAGAGTTGTCGTGTCCGTC+TGG + chr5_2:8577428-8577447 Msa0754880:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG + chr5_2:8577648-8577667 Msa0754880:intron 60.0%
GCGAAGCTGAGGGAAAAGCC+AGG - chr5_2:8578544-8578563 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8576690 8578774 8576690 ID=Msa0754880;Name=Msa0754880
chr5_2 mRNA 8576690 8578774 8576690 ID=Msa0754880-mRNA-1;Parent=Msa0754880;Name=Msa0754880-mRNA-1;_AED=0.26;_eAED=0.26;_QI=105|0.33|0.25|0.75|1|1|4|0|184
chr5_2 exon 8576690 8576818 8576690 ID=Msa0754880-mRNA-1:exon:3871;Parent=Msa0754880-mRNA-1
chr5_2 exon 8576942 8577283 8576942 ID=Msa0754880-mRNA-1:exon:3872;Parent=Msa0754880-mRNA-1
chr5_2 exon 8578260 8578346 8578260 ID=Msa0754880-mRNA-1:exon:3873;Parent=Msa0754880-mRNA-1
chr5_2 exon 8578673 8578774 8578673 ID=Msa0754880-mRNA-1:exon:3874;Parent=Msa0754880-mRNA-1
chr5_2 five_prime_UTR 8576690 8576794 8576690 ID=Msa0754880-mRNA-1:five_prime_utr;Parent=Msa0754880-mRNA-1
chr5_2 CDS 8576795 8576818 8576795 ID=Msa0754880-mRNA-1:cds;Parent=Msa0754880-mRNA-1
chr5_2 CDS 8576942 8577283 8576942 ID=Msa0754880-mRNA-1:cds;Parent=Msa0754880-mRNA-1
chr5_2 CDS 8578260 8578346 8578260 ID=Msa0754880-mRNA-1:cds;Parent=Msa0754880-mRNA-1
chr5_2 CDS 8578673 8578774 8578673 ID=Msa0754880-mRNA-1:cds;Parent=Msa0754880-mRNA-1
Gene Sequence

>Msa0754880

ATGGCTTCCCAAGTATTTCTTCAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCCTCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGACTTTCAGAGTTGTTCACTGTAAAAGTGTAAAGTTCTATATTCTTTTAAATGAGATATTTTTCGGTTTCTCTCTTACCTTGCGGTATACACTGCTTGCTTAA

Protein sequence

>Msa0754880

MASQVFLQTLFAPNQCPPTKLGFSSACSASTLASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLTFRVVHCKSVKFYILLNEIFFGFSLTLRYTLLA*