AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173700 MtrunA17_Chr1g0193851 97.096 551 10 1 1 545 1 551 0.0 1080
Msa0173700 MtrunA17_Chr7g0226261 29.495 495 306 15 73 541 16 493 8.07e-50 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173700 AT4G01690.1 77.963 540 107 5 12 545 4 537 0.0 837
Msa0173700 AT4G01690.2 73.333 540 101 6 12 545 4 506 0.0 768
Msa0173700 AT5G14220.1 28.163 490 312 13 75 539 21 495 2.23e-48 176
Msa0173700 AT5G14220.4 28.163 490 312 13 75 539 69 543 3.32e-48 176
Msa0173700 AT5G14220.2 28.247 485 288 15 75 539 21 465 2.38e-46 169
Msa0173700 AT5G14220.3 26.622 447 292 12 118 539 2 437 2.02e-39 149
Msa0173700 AT5G14220.5 26.622 447 292 12 118 539 2 437 2.02e-39 149

Find 202 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTCAAAATCTACAAAA+TGG 0.183867 1_4:-59066055 None:intergenic
TGCTCAGGATCCAATTGTTT+TGG 0.225364 1_4:+59065683 Msa0173700:CDS
CAAAATGGTGGTAGCATTAT+TGG 0.232913 1_4:+59063213 Msa0173700:CDS
CCTGAGCATTTGGATTTATA+AGG 0.239671 1_4:-59065668 None:intergenic
ATTGGAGGGGCTACCAATTC+TGG 0.258952 1_4:+59065094 Msa0173700:CDS
GATTTGAGGGGCTGTTCCTT+GGG 0.259606 1_4:+59065796 Msa0173700:CDS
CGGAGAAGGGTTTGAGAGGG+TGG 0.262547 1_4:-59060457 None:intergenic
TGCAAAGAAACAACTCCTTC+TGG 0.269612 1_4:-59063636 None:intergenic
TGGAGAGAGATGGGTTTCTT+TGG 0.273128 1_4:+59060782 Msa0173700:CDS
AGATTTATTGTGTTAGGTTC+TGG 0.274766 1_4:+59065958 Msa0173700:three_prime_UTR
TCTCTCCTGTATTGCTTTGA+AGG 0.274882 1_4:-59063241 None:intergenic
GGCAAGATCAGGGCTGGCTT+TGG 0.280653 1_4:+59061751 Msa0173700:CDS
GGCAAATCAGTTGGCTTTCC+CGG 0.284184 1_4:-59061703 None:intergenic
TTCTGGGTGGCTTCTGTTAC+GGG 0.285192 1_4:+59065975 Msa0173700:three_prime_UTR
TCTGATCTAATGGCTTCTTT+TGG 0.297997 1_4:-59064771 None:intergenic
TCAAATATGCATATTCTGTT+TGG 0.302457 1_4:+59066141 Msa0173700:three_prime_UTR
ACAATTGGATCCTGAGCATT+TGG 0.304286 1_4:-59065678 None:intergenic
GATGGTGAGTTGAAGGGATT+TGG 0.305933 1_4:+59064804 Msa0173700:CDS
TTAAGTATGAAAGCAGCTTT+TGG 0.310156 1_4:+59063171 Msa0173700:CDS
TTTGAAGGACGATCTTGTTT+TGG 0.318825 1_4:+59061627 Msa0173700:intron
GATTTATTGTGTTAGGTTCT+GGG 0.321154 1_4:+59065959 Msa0173700:three_prime_UTR
GCCTCGGTAACAACAACATT+GGG 0.323168 1_4:-59060727 None:intergenic
TCAGAAGGTTGAAAACTATT+AGG 0.342704 1_4:-59060814 None:intergenic
CTTCCAGGTGGTGCTCGGTT+AGG 0.346004 1_4:-59065052 None:intergenic
CCATTCCACAACACAAATCT+AGG 0.348854 1_4:-59061664 None:intergenic
GGATTTGAGGGGCTGTTCCT+TGG 0.351474 1_4:+59065795 Msa0173700:CDS
AATTATTTCAAAACATTGTA+TGG 0.351781 1_4:-59066089 None:intergenic
TTTATCAGATTTATTGTGTT+AGG 0.353203 1_4:+59065952 Msa0173700:three_prime_UTR
ACAGTTTGACCCTTTGGCTT+TGG 0.353786 1_4:-59063380 None:intergenic
TACCTAATGTTTGCACTCCT+TGG 0.364807 1_4:-59064845 None:intergenic
TGAGTATTGGTGGCAAGATC+AGG 0.365761 1_4:+59061740 Msa0173700:CDS
GAGTTCGTGCGTCGAAATCT+TGG 0.366392 1_4:+59061961 Msa0173700:CDS
GTTCTGGGTGGCTTCTGTTA+CGG 0.368455 1_4:+59065974 Msa0173700:three_prime_UTR
TTCTTTGACTTAATGAGTAT+TGG 0.369041 1_4:+59061727 Msa0173700:CDS
GTGAAGGTGGAGAAAGAAGG+AGG 0.371679 1_4:-59060408 None:intergenic
GTTTGCTTGCCACTTGCAAT+TGG 0.372185 1_4:-59060289 None:intergenic
TTGAATTGGAGGAGGGGAAA+GGG 0.374371 1_4:-59060495 None:intergenic
TGTATGGATTTACATATATC+AGG 0.376089 1_4:-59066073 None:intergenic
GTAACAAGGTGAAGTTATCT+TGG 0.380123 1_4:+59063556 Msa0173700:CDS
GCTATTCCACAGTTCTTAGT+TGG 0.382466 1_4:+59065726 Msa0173700:CDS
CAGGTCAAAATCTACAAAAT+GGG 0.383515 1_4:-59066054 None:intergenic
GAAATGGAAACTGCCGCAAC+TGG 0.385344 1_4:-59064744 None:intergenic
GCAAAGAAACAACTCCTTCT+GGG 0.387031 1_4:-59063635 None:intergenic
TATCAAGCATTCTGATCTAA+TGG 0.392972 1_4:-59064781 None:intergenic
GGAGAGAGATGGGTTTCTTT+GGG 0.394520 1_4:+59060783 Msa0173700:CDS
TGGCTCTGACCTGAACAAAA+AGG 0.394707 1_4:-59062012 None:intergenic
CTTTGATAAAATCCCAGAAT+TGG 0.395418 1_4:-59065107 None:intergenic
AGTTCGTGCGTCGAAATCTT+GGG 0.397568 1_4:+59061962 Msa0173700:CDS
TTCAAGAGTAGAACCCTTCC+AGG 0.398239 1_4:-59065067 None:intergenic
TTCCAGGTGGTGCTCGGTTA+GGG 0.398524 1_4:-59065051 None:intergenic
GATCCAACAGTTTGACCCTT+TGG 0.399991 1_4:-59063386 None:intergenic
ACTTTGTCATTACAATGAAA+TGG 0.400400 1_4:-59065930 None:intergenic
GATGGGTTTCTTTGGGAAGA+AGG 0.407260 1_4:+59060790 Msa0173700:CDS
GGTTTGAGAGGGTGGGAAGA+AGG 0.407669 1_4:-59060449 None:intergenic
GGGAAAGGGGAATGGAGATG+AGG 0.409681 1_4:-59060481 None:intergenic
TACTGTTACTGAAACTTAAC+CGG 0.413758 1_4:-59060332 None:intergenic
CTATGTGTTTGGTGTTGCCT+TGG 0.414467 1_4:+59065824 Msa0173700:CDS
ACCACCTCAAAATCAAATTC+CGG 0.416364 1_4:+59060610 Msa0173700:CDS
TTGGAGGGGCTACCAATTCT+GGG 0.425638 1_4:+59065095 Msa0173700:CDS
TGGGAAATTGAGGCCGGTGC+CGG 0.426371 1_4:+59061684 Msa0173700:CDS
GTGGTGCTCGGTTAGGGAAA+AGG 0.428455 1_4:-59065045 None:intergenic
GTCAAACTGTTGGATCATTC+CGG 0.429218 1_4:+59063393 Msa0173700:CDS
GCAACATGGTAAGTCCCTTC+CGG 0.429534 1_4:-59063412 None:intergenic
AATGGAGATGAGGGCGGAGA+AGG 0.430870 1_4:-59060471 None:intergenic
AGTATTAGTAAACTGGATAG+TGG 0.439960 1_4:+59063588 Msa0173700:CDS
CTAGATTTGTGTTGTGGAAT+GGG 0.440359 1_4:+59061665 Msa0173700:CDS
AGGGCTGGCTTTGGAGCACT+TGG 0.442410 1_4:+59061760 Msa0173700:CDS
TACCTAGCAGAAATTGCGTT+TGG 0.443372 1_4:-59063434 None:intergenic
TGGAGGAGGGGAAAGGGGAA+TGG 0.448268 1_4:-59060489 None:intergenic
ATGGAGATGAGGGCGGAGAA+GGG 0.448458 1_4:-59060470 None:intergenic
GGAAAGGGGAATGGAGATGA+GGG 0.452855 1_4:-59060480 None:intergenic
GAAGGTGGAGAAAGAAGGAG+GGG 0.453418 1_4:-59060406 None:intergenic
TTTGAATTGGAGGAGGGGAA+AGG 0.454290 1_4:-59060496 None:intergenic
TGAATTGGAGGAGGGGAAAG+GGG 0.455157 1_4:-59060494 None:intergenic
AAGGGGAATGGAGATGAGGG+CGG 0.459680 1_4:-59060477 None:intergenic
TCAGTTGGCTTTCCCGGCAC+CGG 0.460917 1_4:-59061697 None:intergenic
TACTCTTGAATTACATTGGA+GGG 0.461041 1_4:+59065080 Msa0173700:CDS
GGAGACGGAGAATGGGGTTA+TGG 0.461330 1_4:-59060546 None:intergenic
GTGTGGAGGCTCGAACAAAA+TGG 0.463440 1_4:+59063198 Msa0173700:CDS
GGAGCAACGGAGACGGAGAA+TGG 0.472053 1_4:-59060554 None:intergenic
AAGGAACAGCCCCTCAAATC+CGG 0.472268 1_4:-59065793 None:intergenic
GTTCTACTCTTGAATTACAT+TGG 0.473931 1_4:+59065076 Msa0173700:CDS
TTCTCCACCTTCACCCGCCA+TGG 0.474334 1_4:+59060417 Msa0173700:exon
AGAAAACACACTGGAGGAGG+AGG 0.474459 1_4:-59061790 None:intergenic
AACACAAATCTAGGTGCATC+AGG 0.475052 1_4:-59061655 None:intergenic
GAGCAACGGAGACGGAGAAT+GGG 0.476836 1_4:-59060553 None:intergenic
TGGTGCTCGGTTAGGGAAAA+GGG 0.478452 1_4:-59065044 None:intergenic
TTTGACTTAATGAGTATTGG+TGG 0.479201 1_4:+59061730 Msa0173700:CDS
GAAAGTGCATCTGCAGCAGC+AGG 0.479760 1_4:-59064705 None:intergenic
TATGTGTTTGGTGTTGCCTT+GGG 0.480108 1_4:+59065825 Msa0173700:CDS
GGGAAATTGAGGCCGGTGCC+GGG 0.482439 1_4:+59061685 Msa0173700:CDS
AGATCAGAATGCTTGATAGA+TGG 0.483446 1_4:+59064786 Msa0173700:CDS
CGGGTGAAGGTGGAGAAAGA+AGG 0.486279 1_4:-59060411 None:intergenic
CGCCTCGGTAACAACAACAT+TGG 0.487396 1_4:-59060728 None:intergenic
GCCTTGGGAAGGTGTGTTGA+GGG 0.489434 1_4:+59065840 Msa0173700:CDS
CCTTATAAATCCAAATGCTC+AGG 0.489745 1_4:+59065668 Msa0173700:CDS
GCGTCGAAATCTTGGGGCCG+AGG 0.491211 1_4:+59061969 Msa0173700:CDS
AGCCAAGGAGTGCAAACATT+AGG 0.492529 1_4:+59064843 Msa0173700:CDS
GACTGTGTGGTTGTTGGTGG+TGG 0.492721 1_4:+59060649 Msa0173700:CDS
TTCCCTAACCGAGCACCACC+TGG 0.500403 1_4:+59065049 Msa0173700:CDS
CTTGATAGATGGTGAGTTGA+AGG 0.501381 1_4:+59064797 Msa0173700:CDS
CAGACATTGGACAACATATC+CGG 0.501565 1_4:+59060313 Msa0173700:five_prime_UTR
ATTTGAGGGGCTGTTCCTTG+GGG 0.502668 1_4:+59065797 Msa0173700:CDS
AAGCCAAAGGGTCAAACTGT+TGG 0.506404 1_4:+59063383 Msa0173700:CDS
GTGACAGGGTCATGAGGAAT+CGG 0.511762 1_4:+59061933 Msa0173700:intron
TCCGTCGACTGTGTGGTTGT+TGG 0.512497 1_4:+59060643 Msa0173700:CDS
ATTATTACCGTGGAGAGAGA+TGG 0.512962 1_4:+59060772 Msa0173700:CDS
TGCCTTGGGAAGGTGTGTTG+AGG 0.513044 1_4:+59065839 Msa0173700:CDS
TGGAGCCTTCAAAGCAATAC+AGG 0.517480 1_4:+59063236 Msa0173700:CDS
CCTAGATTTGTGTTGTGGAA+TGG 0.519996 1_4:+59061664 Msa0173700:CDS
AGGGCGGAGAAGGGTTTGAG+AGG 0.522166 1_4:-59060461 None:intergenic
TGAAGGTGGAGAAAGAAGGA+GGG 0.523848 1_4:-59060407 None:intergenic
ATACTCATTAAGTCAAAGAA+AGG 0.523934 1_4:-59061724 None:intergenic
ACAGACAGTGGTTGCAGCAA+TGG 0.525178 1_4:-59063702 None:intergenic
TGTTTGGTGTTGCCTTGGGA+AGG 0.525493 1_4:+59065829 Msa0173700:CDS
GTTGTTGGTGGTGGCATCAG+TGG 0.527241 1_4:+59060658 Msa0173700:CDS
CAGTGGACTATGTATTGCTC+AGG 0.529861 1_4:+59060675 Msa0173700:CDS
CTACTCTTGAATTACATTGG+AGG 0.531064 1_4:+59065079 Msa0173700:CDS
TTATTACCGTGGAGAGAGAT+GGG 0.537500 1_4:+59060773 Msa0173700:CDS
CCGCAATGGAGCAACGGAGA+CGG 0.540345 1_4:-59060561 None:intergenic
CAAAGAAACAACTCCTTCTG+GGG 0.540704 1_4:-59063634 None:intergenic
AGAAATTGCGTTTGGCAACA+TGG 0.544410 1_4:-59063426 None:intergenic
TGTTGTGGAATGGGAAATTG+AGG 0.544788 1_4:+59061674 Msa0173700:CDS
AGTGTAACCATGGCGGGTGA+AGG 0.546079 1_4:-59060424 None:intergenic
TCATATACAGGTGTCTATGC+CGG 0.548115 1_4:+59063135 Msa0173700:intron
ATTGGTGGCAAGATCAGGGC+TGG 0.549710 1_4:+59061745 Msa0173700:CDS
ACTCTTGAATTACATTGGAG+GGG 0.550694 1_4:+59065081 Msa0173700:CDS
AAAAGAAAACACACTGGAGG+AGG 0.550713 1_4:-59061793 None:intergenic
GAACCCTTCCAGGTGGTGCT+CGG 0.551325 1_4:-59065057 None:intergenic
GTCGACTGTGTGGTTGTTGG+TGG 0.553915 1_4:+59060646 Msa0173700:CDS
TCAAAGAAAGGCAAATCAGT+TGG 0.554397 1_4:-59061712 None:intergenic
GATTTGGTCAATTGCATCCA+CGG 0.558189 1_4:+59064820 Msa0173700:CDS
GGAGAAGGGTTTGAGAGGGT+GGG 0.559498 1_4:-59060456 None:intergenic
AAGGTGAGTGTAACCATGGC+GGG 0.561866 1_4:-59060430 None:intergenic
GAGTATTGGTGGCAAGATCA+GGG 0.567150 1_4:+59061741 Msa0173700:CDS
TTTGAGGGGCTGTTCCTTGG+GGG 0.567319 1_4:+59065798 Msa0173700:CDS
TGCGGTGGATTCCTCCGCAA+TGG 0.568908 1_4:-59060575 None:intergenic
TAGGCGTCTGCCAAAGCCAA+AGG 0.571021 1_4:+59063370 Msa0173700:intron
AGGTCAAAATCTACAAAATG+GGG 0.571412 1_4:-59066053 None:intergenic
GAGGCGAAAGATCGAGTTGG+TGG 0.572541 1_4:+59060745 Msa0173700:CDS
TGGCAAGCAAACACAGACAT+TGG 0.573803 1_4:+59060300 Msa0173700:five_prime_UTR
GTAACCATGGCGGGTGAAGG+TGG 0.577809 1_4:-59060421 None:intergenic
TTGCTAAATGCATGAGCAAG+TGG 0.580958 1_4:-59066009 None:intergenic
ATGCACCTAGATTTGTGTTG+TGG 0.582787 1_4:+59061659 Msa0173700:CDS
TAACCGAGCACCACCTGGAA+GGG 0.584581 1_4:+59065054 Msa0173700:CDS
CAATTGCATCCACGGAGCCA+AGG 0.584598 1_4:+59064828 Msa0173700:CDS
AACCACACAGTCGACGGATG+AGG 0.587789 1_4:-59060638 None:intergenic
AGGCGTCTGCCAAAGCCAAA+GGG 0.588421 1_4:+59063371 Msa0173700:intron
AATGGTGGTAGCATTATTGG+TGG 0.588539 1_4:+59063216 Msa0173700:CDS
CTAACCGAGCACCACCTGGA+AGG 0.589476 1_4:+59065053 Msa0173700:CDS
AACTGTTGGATCATTCCGGA+AGG 0.589794 1_4:+59063397 Msa0173700:CDS
TGTTGGCAGGTTAGGTAACA+AGG 0.592433 1_4:+59063542 Msa0173700:intron
GTCGACGGATGAGGACTCTC+CGG 0.593499 1_4:-59060629 None:intergenic
GCAGCAATGGACTAGCAACA+TGG 0.594611 1_4:-59063689 None:intergenic
ACTAGCAACATGGGAAGGAA+TGG 0.596346 1_4:-59063679 None:intergenic
CCGTCTCCGTTGCTCCATTG+CGG 0.597409 1_4:+59060561 Msa0173700:CDS
CGCAGAGAGTGTACAAGTAG+CGG 0.598522 1_4:+59065901 Msa0173700:CDS
ACCAACAACCACACAGTCGA+CGG 0.599076 1_4:-59060644 None:intergenic
TCCCTCAACACACCTTCCCA+AGG 0.601614 1_4:-59065841 None:intergenic
CTTTCTACAAAGCATGCTGA+TGG 0.605299 1_4:+59060700 Msa0173700:CDS
TTTGTTTAATTGCAGACGGA+GGG 0.606182 1_4:+59065606 Msa0173700:intron
GGGCGGAGAAGGGTTTGAGA+GGG 0.606191 1_4:-59060460 None:intergenic
GTTTGCACTCCTTGGCTCCG+TGG 0.607612 1_4:-59064837 None:intergenic
TACTTCAGCTGCTATCTCGT+AGG 0.608699 1_4:-59065865 None:intergenic
ACCAACTCGATCTTTCGCCT+CGG 0.609410 1_4:-59060743 None:intergenic
GAAAACACACTGGAGGAGGA+GGG 0.609629 1_4:-59061789 None:intergenic
ATGTAAGAGCCAATTGCAAG+TGG 0.609856 1_4:+59060280 None:intergenic
CCCCAATGTTGTTGTTACCG+AGG 0.610569 1_4:+59060726 Msa0173700:CDS
ATGGTGAGCATAGGATCAGA+AGG 0.615324 1_4:-59060829 None:intergenic
CATACCACCATGGTGAGCAT+AGG 0.615890 1_4:-59060838 None:intergenic
ACTTGCTCATGCATTTAGCA+AGG 0.616451 1_4:+59066011 Msa0173700:three_prime_UTR
ATGGAAACTGCCGCAACTGG+AGG 0.618307 1_4:-59064741 None:intergenic
TCTCCGTTGCTCCATTGCGG+AGG 0.619176 1_4:+59060564 Msa0173700:CDS
TGATCCTATGCTCACCATGG+TGG 0.621350 1_4:+59060834 Msa0173700:CDS
ATTCCTCCGCAATGGAGCAA+CGG 0.621982 1_4:-59060567 None:intergenic
TGCCAAACGCAATTTCTGCT+AGG 0.622423 1_4:+59063432 Msa0173700:CDS
GTCCTCATCCGTCGACTGTG+TGG 0.625269 1_4:+59060636 Msa0173700:CDS
TTATTGTGTTAGGTTCTGGG+TGG 0.627991 1_4:+59065962 Msa0173700:three_prime_UTR
AAGAACTGTGGAATAGCTTG+AGG 0.628529 1_4:-59065720 None:intergenic
TTGATAGATGGTGAGTTGAA+GGG 0.630684 1_4:+59064798 Msa0173700:CDS
ACGAAGGTGACAGGGTCATG+AGG 0.634684 1_4:+59061927 Msa0173700:intron
GTGGAATGGGAAATTGAGGC+CGG 0.635091 1_4:+59061678 Msa0173700:CDS
AAGAAACCCATCTCTCTCCA+CGG 0.637483 1_4:-59060779 None:intergenic
AGGCGAAAGATCGAGTTGGT+GGG 0.637489 1_4:+59060746 Msa0173700:CDS
CAGCAATGGACTAGCAACAT+GGG 0.637669 1_4:-59063688 None:intergenic
TGGTGGGAATATTATTACCG+TGG 0.637750 1_4:+59060762 Msa0173700:CDS
AATGGACTAGCAACATGGGA+AGG 0.638945 1_4:-59063684 None:intergenic
GTTCGTGCGTCGAAATCTTG+GGG 0.639972 1_4:+59061963 Msa0173700:CDS
GTCAAAATCTACAAAATGGG+GGG 0.647394 1_4:-59066051 None:intergenic
GGTCAAAATCTACAAAATGG+GGG 0.651163 1_4:-59066052 None:intergenic
AGATGTCCAACTAAGAACTG+TGG 0.655954 1_4:-59065732 None:intergenic
TTCTGATCCTATGCTCACCA+TGG 0.662399 1_4:+59060831 Msa0173700:CDS
GAAGAAGGTGAGTGTAACCA+TGG 0.663337 1_4:-59060434 None:intergenic
AGCAACGGAGACGGAGAATG+GGG 0.663402 1_4:-59060552 None:intergenic
ACCGAGGCGAAAGATCGAGT+TGG 0.669092 1_4:+59060742 Msa0173700:CDS
TTGACGTATGAAACCCCAGA+AGG 0.670583 1_4:+59063621 Msa0173700:CDS
ACTGTTGGATCATTCCGGAA+GGG 0.675135 1_4:+59063398 Msa0173700:CDS
TGGAGGCTCGAACAAAATGG+TGG 0.692440 1_4:+59063201 Msa0173700:CDS
GAAGGTGAGTGTAACCATGG+CGG 0.701877 1_4:-59060431 None:intergenic
TTGATTACAACATACCACCA+TGG 0.703359 1_4:-59060848 None:intergenic
CCTCGGTAACAACAACATTG+GGG 0.719137 1_4:-59060726 None:intergenic
AAGAGTAGAACCCTTCCAGG+TGG 0.742286 1_4:-59065064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTAAATTAAGT+TGG - chr1_4:59062645-59062664 None:intergenic 10.0%
!!! TTGATTAATATTTAAAATAG+AGG + chr1_4:59062852-59062871 Msa0173700:intron 10.0%
!!! TGATTAATATTTAAAATAGA+GGG + chr1_4:59062853-59062872 Msa0173700:intron 10.0%
!!! AATGAATTTTGATTTTGAAT+TGG - chr1_4:59060512-59060531 None:intergenic 15.0%
!! TTGAAATTGAAATTGAAATT+TGG + chr1_4:59060920-59060939 Msa0173700:intron 15.0%
!!! GTCATTTTTTTTAGTAAATT+TGG + chr1_4:59061007-59061026 Msa0173700:intron 15.0%
!!! TTATGTCTTTTCATATTTAT+CGG - chr1_4:59061180-59061199 None:intergenic 15.0%
!! AGAAAATTAAACAAAAGAAA+GGG - chr1_4:59061822-59061841 None:intergenic 15.0%
!! AAGAAAATTAAACAAAAGAA+AGG - chr1_4:59061823-59061842 None:intergenic 15.0%
!! ACTATGTTAAATGAAATATA+TGG + chr1_4:59061843-59061862 Msa0173700:intron 15.0%
!!! TTTTATATAATATAGGAGTT+TGG + chr1_4:59062125-59062144 Msa0173700:intron 15.0%
!!! AAATTAAGTTGGATATTTTT+TGG - chr1_4:59062634-59062653 None:intergenic 15.0%
!! ATGAAGTAATATTAAAGAAA+AGG - chr1_4:59063057-59063076 None:intergenic 15.0%
!!! AGTTTTATTAGTTGAATATT+TGG + chr1_4:59063770-59063789 Msa0173700:intron 15.0%
!! AATTATTTCAAAACATTGTA+TGG - chr1_4:59066092-59066111 None:intergenic 15.0%
!! TAAACGTATCAAAATAGAAA+AGG + chr1_4:59060975-59060994 Msa0173700:intron 20.0%
!!! ATAATTGATTAATTAGCTTC+TGG + chr1_4:59061067-59061086 Msa0173700:intron 20.0%
!!! TAGAGATGTTTTTGTAATTT+TGG + chr1_4:59061521-59061540 Msa0173700:intron 20.0%
!!! TTTTGTAATTTTGGAACATT+TGG + chr1_4:59061530-59061549 Msa0173700:intron 20.0%
!! TTAAATGAAATATATGGAAC+TGG + chr1_4:59061849-59061868 Msa0173700:intron 20.0%
!! ATATGATATAATATTGACGA+AGG + chr1_4:59061911-59061930 Msa0173700:intron 20.0%
!!! CGGAGATTTTTATATAATAT+AGG + chr1_4:59062118-59062137 Msa0173700:intron 20.0%
!! AAGAAACTTCTTATTCTATT+AGG - chr1_4:59062212-59062231 None:intergenic 20.0%
!!! ATGGATTTGAAATATTCTTT+GGG - chr1_4:59062241-59062260 None:intergenic 20.0%
!!! AAATTTCAGTTTTTAAGAGA+CGG - chr1_4:59062272-59062291 None:intergenic 20.0%
!!! TGAGTTTTAAACAAATGAAA+AGG - chr1_4:59062560-59062579 None:intergenic 20.0%
!! TCATTTCATATCAAAATATC+CGG - chr1_4:59062786-59062805 None:intergenic 20.0%
!! TCATTTATAAGAGGAAAAAT+TGG - chr1_4:59062991-59063010 None:intergenic 20.0%
!! TAATGCGAATATTAAAGAAA+AGG - chr1_4:59063083-59063102 None:intergenic 20.0%
!! TTTCTTTAATATTCGCATTA+AGG + chr1_4:59063083-59063102 Msa0173700:intron 20.0%
!!! TCAGAGTAAATGTATTTTTA+CGG - chr1_4:59063294-59063313 None:intergenic 20.0%
!!! GATTTTTCTATAAAAATCAG+AGG - chr1_4:59063991-59064010 None:intergenic 20.0%
!! TGTGATTGATATAATAATAC+TGG - chr1_4:59064238-59064257 None:intergenic 20.0%
!! TATTGCCAATTAAAAAAACA+AGG - chr1_4:59064264-59064283 None:intergenic 20.0%
!!! CATAACTCTAAAATATTACA+AGG - chr1_4:59064356-59064375 None:intergenic 20.0%
!!! ACAAATAAGTTATTTCTGAA+TGG + chr1_4:59064606-59064625 Msa0173700:intron 20.0%
!! TTGAATTTATTATGCAAAAG+TGG + chr1_4:59064873-59064892 Msa0173700:intron 20.0%
!! TACAGTTCATAATTTATACT+TGG - chr1_4:59064947-59064966 None:intergenic 20.0%
!! AAGTATGTAAAATATGTAAC+AGG - chr1_4:59065508-59065527 None:intergenic 20.0%
!! AAAGTTTCTCTTAAAAATAC+CGG + chr1_4:59065774-59065793 Msa0173700:CDS 20.0%
!! TTTATCAGATTTATTGTGTT+AGG + chr1_4:59065952-59065971 Msa0173700:three_prime_UTR 20.0%
!!! GAATTTTGATTTTGAATTGG+AGG - chr1_4:59060509-59060528 None:intergenic 25.0%
!! TTCATATTTATCGGTTAGTT+TGG - chr1_4:59061171-59061190 None:intergenic 25.0%
! CTAGAATCTTGTGAAAAAAT+TGG + chr1_4:59061291-59061310 Msa0173700:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG + chr1_4:59061404-59061423 Msa0173700:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG + chr1_4:59061404-59061423 Msa0173700:intron 25.0%
! ATACTCATTAAGTCAAAGAA+AGG - chr1_4:59061727-59061746 None:intergenic 25.0%
!! TTCTTTGACTTAATGAGTAT+TGG + chr1_4:59061727-59061746 Msa0173700:CDS 25.0%
!! TGGATTTGAAATATTCTTTG+GGG - chr1_4:59062240-59062259 None:intergenic 25.0%
!! GATGGATTTGAAATATTCTT+TGG - chr1_4:59062242-59062261 None:intergenic 25.0%
!!! AATTTCAGTTTTTAAGAGAC+GGG - chr1_4:59062271-59062290 None:intergenic 25.0%
! ATTTGCATAGATTAAGACTT+TGG + chr1_4:59062295-59062314 Msa0173700:intron 25.0%
! TTTGCATAGATTAAGACTTT+GGG + chr1_4:59062296-59062315 Msa0173700:intron 25.0%
! ATGGTGCATTTATCAAATTA+AGG - chr1_4:59062956-59062975 None:intergenic 25.0%
! AAATTGGAAGAAAGGAAAAA+TGG - chr1_4:59062975-59062994 None:intergenic 25.0%
!! GCTTTCATACTTAATTTTGA+AGG - chr1_4:59063165-59063184 None:intergenic 25.0%
!!! AAATGTATTTTTACGGATCA+CGG - chr1_4:59063287-59063306 None:intergenic 25.0%
!! ATACATTTACTCTGAGTTTT+TGG + chr1_4:59063299-59063318 Msa0173700:intron 25.0%
!!! GCTTTTAAGTATTAGTAAAC+TGG + chr1_4:59063581-59063600 Msa0173700:CDS 25.0%
!!! CTGTAAGTTTTTCTAAAAAG+TGG + chr1_4:59063721-59063740 Msa0173700:intron 25.0%
! AAATCAGAGGATGATAAATA+GGG - chr1_4:59063978-59063997 None:intergenic 25.0%
! AAAATCAGAGGATGATAAAT+AGG - chr1_4:59063979-59063998 None:intergenic 25.0%
!! TTTCTTTTCTGTTCAACATA+TGG + chr1_4:59064012-59064031 Msa0173700:intron 25.0%
! TTTCCAAAAACTTACTACTA+CGG + chr1_4:59064070-59064089 Msa0173700:intron 25.0%
!!! TACTACGGATAATTTTGTTT+GGG + chr1_4:59064085-59064104 Msa0173700:intron 25.0%
! CAGAATCAAAGACAAAAATT+TGG + chr1_4:59064155-59064174 Msa0173700:intron 25.0%
! CTTATGGCTGTTAAAATATT+TGG + chr1_4:59064191-59064210 Msa0173700:intron 25.0%
!!! CAGTTCCTTGTTTTTTTAAT+TGG + chr1_4:59064256-59064275 Msa0173700:intron 25.0%
! TTAACAATAATTTCACAGTC+AGG - chr1_4:59064316-59064335 None:intergenic 25.0%
! AAGTAAACAACCGATATTTA+AGG - chr1_4:59064499-59064518 None:intergenic 25.0%
! GTAATTATTAAAAAATCGCG+TGG - chr1_4:59064921-59064940 None:intergenic 25.0%
! GTTCATAATTTATACTTGGA+TGG - chr1_4:59064943-59064962 None:intergenic 25.0%
!! TAAAATGTGTTGTGTAGTTT+TGG + chr1_4:59064965-59064984 Msa0173700:intron 25.0%
!! TGGTAATGATAACATATTTG+TGG + chr1_4:59064994-59065013 Msa0173700:intron 25.0%
! GGTAATGATAACATATTTGT+GGG + chr1_4:59064995-59065014 Msa0173700:intron 25.0%
! AAGTTTAAACACTTGAAACA+AGG - chr1_4:59065313-59065332 None:intergenic 25.0%
! TATATGATCAAATAACAGAG+AGG - chr1_4:59065485-59065504 None:intergenic 25.0%
! ACTTTGTCATTACAATGAAA+TGG - chr1_4:59065933-59065952 None:intergenic 25.0%
! TGTATGGATTTACATATATC+AGG - chr1_4:59066076-59066095 None:intergenic 25.0%
! TCAAATATGCATATTCTGTT+TGG + chr1_4:59066141-59066160 Msa0173700:three_prime_UTR 25.0%
TACTGTTACTGAAACTTAAC+CGG - chr1_4:59060335-59060354 None:intergenic 30.0%
!! TTTGATTTTGAATTGGAGGA+GGG - chr1_4:59060505-59060524 None:intergenic 30.0%
!!! TTTTGATTTTGAATTGGAGG+AGG - chr1_4:59060506-59060525 None:intergenic 30.0%
TCAGAAGGTTGAAAACTATT+AGG - chr1_4:59060817-59060836 None:intergenic 30.0%
!! TTACGAATGAAGCTTTAAAG+AGG - chr1_4:59060882-59060901 None:intergenic 30.0%
TTAAAGCTTCATTCGTAATG+TGG + chr1_4:59060884-59060903 Msa0173700:intron 30.0%
! ATTGATTAATTAGCTTCTGG+CGG + chr1_4:59061070-59061089 Msa0173700:intron 30.0%
GTGTTTGAATTTGTAGTGTT+TGG + chr1_4:59061128-59061147 Msa0173700:intron 30.0%
GTTTGGTAAAATTAACGCTA+CGG + chr1_4:59061145-59061164 Msa0173700:intron 30.0%
GAAAAAATTGGTTACCAAAC+AGG + chr1_4:59061303-59061322 Msa0173700:intron 30.0%
TTATAGCTTATAAGCTCGTA+TGG - chr1_4:59061339-59061358 None:intergenic 30.0%
!! AGACACTTAGTTGTTTTGTT+TGG + chr1_4:59061397-59061416 Msa0173700:intron 30.0%
!! AGATGCTTAGTTGTTTTGTT+TGG + chr1_4:59061430-59061449 Msa0173700:intron 30.0%
GTTGTTACTATTAATCAGCT+TGG + chr1_4:59061464-59061483 Msa0173700:intron 30.0%
!!! ACATGTTGGTAATATGGTTT+TGG + chr1_4:59061576-59061595 Msa0173700:intron 30.0%
!!! TTTGGTTGTTTTATTTGTGC+AGG + chr1_4:59061594-59061613 Msa0173700:intron 30.0%
!! TTTGACTTAATGAGTATTGG+TGG + chr1_4:59061730-59061749 Msa0173700:CDS 30.0%
AAACAGGACAATGAAAAAGT+TGG - chr1_4:59062038-59062057 None:intergenic 30.0%
AGAACATAAAAGTAGGTAGT+TGG - chr1_4:59062096-59062115 None:intergenic 30.0%
!! AACTACCTACTTTTATGTTC+TGG + chr1_4:59062095-59062114 Msa0173700:intron 30.0%
ACCCTATAATATTCAGTTCT+TGG + chr1_4:59062148-59062167 Msa0173700:intron 30.0%
GCCAAGAACTGAATATTATA+GGG - chr1_4:59062152-59062171 None:intergenic 30.0%
! GCAATATTTCTATGTTCATG+CGG + chr1_4:59062345-59062364 Msa0173700:intron 30.0%
!! ATAAGTGGCTACACTTTTTA+GGG + chr1_4:59062378-59062397 Msa0173700:intron 30.0%
! TCTGCATATTGTGTTAGTTT+AGG + chr1_4:59062415-59062434 Msa0173700:intron 30.0%
! CTGCATATTGTGTTAGTTTA+GGG + chr1_4:59062416-59062435 Msa0173700:intron 30.0%
! TTAGGGCGTAATTACAATTT+TGG + chr1_4:59062433-59062452 Msa0173700:intron 30.0%
AGGATTTCAAGAGAAGATTT+GGG - chr1_4:59062669-59062688 None:intergenic 30.0%
TAGGATTTCAAGAGAAGATT+TGG - chr1_4:59062670-59062689 None:intergenic 30.0%
! ATTTTGTAGAATGCGAGATT+AGG - chr1_4:59062689-59062708 None:intergenic 30.0%
GATATGAAATGAGACTTTAG+AGG + chr1_4:59062794-59062813 Msa0173700:intron 30.0%
TCACACATAACTCAAACTAT+AGG + chr1_4:59062912-59062931 Msa0173700:intron 30.0%
CACACATAACTCAAACTATA+GGG + chr1_4:59062913-59062932 Msa0173700:intron 30.0%
AAGAGGAAAAATTGGAAGAA+AGG - chr1_4:59062983-59063002 None:intergenic 30.0%
TGCTTGTCATCATTTATAAG+AGG - chr1_4:59063000-59063019 None:intergenic 30.0%
!! AGCTGATTTTTGTCATATAC+AGG + chr1_4:59063123-59063142 Msa0173700:intron 30.0%
! TTAAGTATGAAAGCAGCTTT+TGG + chr1_4:59063171-59063190 Msa0173700:CDS 30.0%
! TAAGTATGAAAGCAGCTTTT+GGG + chr1_4:59063172-59063191 Msa0173700:CDS 30.0%
!! AATGTATTTTTACGGATCAC+GGG - chr1_4:59063286-59063305 None:intergenic 30.0%
! GATATTTTGCCATAGTTGAT+GGG + chr1_4:59063321-59063340 Msa0173700:intron 30.0%
ACTGATTGCAACAATTATGT+AGG + chr1_4:59063351-59063370 Msa0173700:intron 30.0%
AGTATTAGTAAACTGGATAG+TGG + chr1_4:59063588-59063607 Msa0173700:CDS 30.0%
TTAGAAAAACTTACAGACAG+TGG - chr1_4:59063717-59063736 None:intergenic 30.0%
ATTAGTTGAATATTTGGACC+TGG + chr1_4:59063776-59063795 Msa0173700:intron 30.0%
TTAGTTGAATATTTGGACCT+GGG + chr1_4:59063777-59063796 Msa0173700:intron 30.0%
! TTTTGTAAGTATACACGTCT+TGG + chr1_4:59063824-59063843 Msa0173700:intron 30.0%
AAACACTCAAACAATCAAAG+AGG - chr1_4:59063895-59063914 None:intergenic 30.0%
AATAGGGAAATGTGAAATCA+TGG - chr1_4:59063962-59063981 None:intergenic 30.0%
! TATCCGTAGTAGTAAGTTTT+TGG - chr1_4:59064076-59064095 None:intergenic 30.0%
! CTACTACGGATAATTTTGTT+TGG + chr1_4:59064084-59064103 Msa0173700:intron 30.0%
! TTGATTCTGAAAACTGTCTA+TGG - chr1_4:59064144-59064163 None:intergenic 30.0%
GAACTAGGTTCCTTAAATAT+CGG + chr1_4:59064486-59064505 Msa0173700:intron 30.0%
AAATGCCTCAACTTATATGA+TGG - chr1_4:59064654-59064673 None:intergenic 30.0%
AGAGATATTGAAATGTAGTC+AGG - chr1_4:59064680-59064699 None:intergenic 30.0%
TATCAAGCATTCTGATCTAA+TGG - chr1_4:59064784-59064803 None:intergenic 30.0%
GTTCTACTCTTGAATTACAT+TGG + chr1_4:59065076-59065095 Msa0173700:CDS 30.0%
TACTCTTGAATTACATTGGA+GGG + chr1_4:59065080-59065099 Msa0173700:CDS 30.0%
CTTTGATAAAATCCCAGAAT+TGG - chr1_4:59065110-59065129 None:intergenic 30.0%
!!! CAATTCTGGGATTTTATCAA+AGG + chr1_4:59065108-59065127 Msa0173700:CDS 30.0%
!! GAAGAGAATCTTTGAAATCT+TGG + chr1_4:59065369-59065388 Msa0173700:intron 30.0%
!! ATCTTTGAAATCTTGGTCAA+AGG + chr1_4:59065376-59065395 Msa0173700:intron 30.0%
GCAATTAAACAAAAGGCTTT+AGG - chr1_4:59065599-59065618 None:intergenic 30.0%
TCTTAAAAATACCGGATTTG+AGG + chr1_4:59065782-59065801 Msa0173700:CDS 30.0%
CTTAAAAATACCGGATTTGA+GGG + chr1_4:59065783-59065802 Msa0173700:CDS 30.0%
TTAAAAATACCGGATTTGAG+GGG + chr1_4:59065784-59065803 Msa0173700:CDS 30.0%
AGATTTATTGTGTTAGGTTC+TGG + chr1_4:59065958-59065977 Msa0173700:three_prime_UTR 30.0%
GATTTATTGTGTTAGGTTCT+GGG + chr1_4:59065959-59065978 Msa0173700:three_prime_UTR 30.0%
AGGTCAAAATCTACAAAATG+GGG - chr1_4:59066056-59066075 None:intergenic 30.0%
CAGGTCAAAATCTACAAAAT+GGG - chr1_4:59066057-59066076 None:intergenic 30.0%
TCAGGTCAAAATCTACAAAA+TGG - chr1_4:59066058-59066077 None:intergenic 30.0%
! TTGATTTTGAATTGGAGGAG+GGG - chr1_4:59060504-59060523 None:intergenic 35.0%
!!! GATTTTGAGGTGGTTTTAGT+CGG - chr1_4:59060604-59060623 None:intergenic 35.0%
ACCACCTCAAAATCAAATTC+CGG + chr1_4:59060610-59060629 Msa0173700:CDS 35.0%
TTGATTACAACATACCACCA+TGG - chr1_4:59060851-59060870 None:intergenic 35.0%
TTTAGGCTCTGTCAAAATAG+CGG + chr1_4:59061044-59061063 Msa0173700:intron 35.0%
ACACATAGTTTATCCGCTAT+CGG - chr1_4:59061112-59061131 None:intergenic 35.0%
!! AAGCTTTAAGCTACTTGAAG+TGG + chr1_4:59061234-59061253 Msa0173700:intron 35.0%
GTTACCAAACAGGTCTAATT+TGG + chr1_4:59061313-59061332 Msa0173700:intron 35.0%
! CATTTTGAGCTTATAGCAGA+TGG - chr1_4:59061363-59061382 None:intergenic 35.0%
!! TTTGAAGGACGATCTTGTTT+TGG + chr1_4:59061627-59061646 Msa0173700:intron 35.0%
!!! TTGAAGGACGATCTTGTTTT+GGG + chr1_4:59061628-59061647 Msa0173700:intron 35.0%
CTAGATTTGTGTTGTGGAAT+GGG + chr1_4:59061665-59061684 Msa0173700:CDS 35.0%
TCAAAGAAAGGCAAATCAGT+TGG - chr1_4:59061715-59061734 None:intergenic 35.0%
ATCAAAAGAAAACACACTGG+AGG - chr1_4:59061799-59061818 None:intergenic 35.0%
ATGAAATATATGGAACTGGC+AGG + chr1_4:59061853-59061872 Msa0173700:intron 35.0%
ATAATATTGACGAAGGTGAC+AGG + chr1_4:59061918-59061937 Msa0173700:intron 35.0%
TAATATTGACGAAGGTGACA+GGG + chr1_4:59061919-59061938 Msa0173700:intron 35.0%
AACAACTGAGAGTGAAAAAC+AGG - chr1_4:59062054-59062073 None:intergenic 35.0%
!! TACCTACTTTTATGTTCTGG+CGG + chr1_4:59062098-59062117 Msa0173700:intron 35.0%
CGCCAAGAACTGAATATTAT+AGG - chr1_4:59062153-59062172 None:intergenic 35.0%
CCAAAAAGCAGTTATCATGA+TGG - chr1_4:59062189-59062208 None:intergenic 35.0%
!! CCATCATGATAACTGCTTTT+TGG + chr1_4:59062186-59062205 Msa0173700:intron 35.0%
TGCGGAATTTGTAACATAAG+TGG + chr1_4:59062363-59062382 Msa0173700:intron 35.0%
!! CATAAGTGGCTACACTTTTT+AGG + chr1_4:59062377-59062396 Msa0173700:intron 35.0%
!!! GTCTCTGTAGTTTTTTTCGA+GGG - chr1_4:59062887-59062906 None:intergenic 35.0%
! GTTTGAGTTATGTGTGACTT+TGG - chr1_4:59062909-59062928 None:intergenic 35.0%
ATGACAAAAATCAGCTAAGC+AGG - chr1_4:59063119-59063138 None:intergenic 35.0%
!! ACTTAATTTTGAAGGATCGC+CGG - chr1_4:59063157-59063176 None:intergenic 35.0%
CAAAATGGTGGTAGCATTAT+TGG + chr1_4:59063213-59063232 Msa0173700:CDS 35.0%
!! ATGTATTTTTACGGATCACG+GGG - chr1_4:59063285-59063304 None:intergenic 35.0%
! GGATATTTTGCCATAGTTGA+TGG + chr1_4:59063320-59063339 Msa0173700:intron 35.0%
GTAAACTAACCCATCAACTA+TGG - chr1_4:59063333-59063352 None:intergenic 35.0%
TGGTGAAACAACTAGAACAA+TGG - chr1_4:59063477-59063496 None:intergenic 35.0%
GTAACAAGGTGAAGTTATCT+TGG + chr1_4:59063556-59063575 Msa0173700:CDS 35.0%
TTCAATAAGACAAATGACCC+AGG - chr1_4:59063797-59063816 None:intergenic 35.0%
AAAACTAAAGACCTGCAGTA+AGG - chr1_4:59063852-59063871 None:intergenic 35.0%
!!! GGTTTTGTTTAGTGATTAGC+AGG + chr1_4:59064106-59064125 Msa0173700:intron 35.0%
TTTAGTGATTAGCAGGTTCT+AGG + chr1_4:59064113-59064132 Msa0173700:intron 35.0%
TTAGTGATTAGCAGGTTCTA+GGG + chr1_4:59064114-59064133 Msa0173700:intron 35.0%
! ACTGGTTTCTTCAGACTTAT+AGG - chr1_4:59064220-59064239 None:intergenic 35.0%
CAAAAAACCCGTAATGTTTC+CGG + chr1_4:59064428-59064447 Msa0173700:intron 35.0%
CTATATAGCTTCTGCTATGT+AGG - chr1_4:59064467-59064486 None:intergenic 35.0%
AGCAGAAGCTATATAGAACT+AGG + chr1_4:59064471-59064490 Msa0173700:intron 35.0%
ATTTCTGAATGGCCAATTTC+TGG + chr1_4:59064617-59064636 Msa0173700:intron 35.0%
!! GTTTTATTATCCTCCAGTTG+CGG + chr1_4:59064731-59064750 Msa0173700:CDS 35.0%
! TCTAATGGCTTCTTTTGGAT+AGG - chr1_4:59064769-59064788 None:intergenic 35.0%
! TCTGATCTAATGGCTTCTTT+TGG - chr1_4:59064774-59064793 None:intergenic 35.0%
AGATCAGAATGCTTGATAGA+TGG + chr1_4:59064786-59064805 Msa0173700:CDS 35.0%
! TTGATAGATGGTGAGTTGAA+GGG + chr1_4:59064798-59064817 Msa0173700:CDS 35.0%
!!! ATGTGTTGTGTAGTTTTGGA+AGG + chr1_4:59064969-59064988 Msa0173700:intron 35.0%
!!! TTGTGTAGTTTTGGAAGGTA+TGG + chr1_4:59064974-59064993 Msa0173700:intron 35.0%
AACATATTTGTGGGTTTGAC+AGG + chr1_4:59065004-59065023 Msa0173700:intron 35.0%
CTACTCTTGAATTACATTGG+AGG + chr1_4:59065079-59065098 Msa0173700:CDS 35.0%
ACTCTTGAATTACATTGGAG+GGG + chr1_4:59065081-59065100 Msa0173700:CDS 35.0%
!! TCTGGGATTTTATCAAAGGT+AGG + chr1_4:59065112-59065131 Msa0173700:intron 35.0%
TGCAATTGTTTGAGCTGTTA+TGG + chr1_4:59065168-59065187 Msa0173700:intron 35.0%
! AGCTGTTATGGTGTCAAATA+AGG + chr1_4:59065180-59065199 Msa0173700:intron 35.0%
AAATAAGGCGAAAGTGAAAG+AGG + chr1_4:59065195-59065214 Msa0173700:intron 35.0%
! TTTTCCTTCTTCGTTGTTGT+TGG + chr1_4:59065221-59065240 Msa0173700:intron 35.0%
! CTTCATCATGTCTTGATGAT+TGG + chr1_4:59065439-59065458 Msa0173700:intron 35.0%
!! GCCTTTTGTTTAATTGCAGA+CGG + chr1_4:59065602-59065621 Msa0173700:intron 35.0%
TCCGTCTGCAATTAAACAAA+AGG - chr1_4:59065606-59065625 None:intergenic 35.0%
!! TTTTGTTTAATTGCAGACGG+AGG + chr1_4:59065605-59065624 Msa0173700:intron 35.0%
TTTGTTTAATTGCAGACGGA+GGG + chr1_4:59065606-59065625 Msa0173700:intron 35.0%
CCTGAGCATTTGGATTTATA+AGG - chr1_4:59065671-59065690 None:intergenic 35.0%
CCTTATAAATCCAAATGCTC+AGG + chr1_4:59065668-59065687 Msa0173700:CDS 35.0%
GTCAAAATCTACAAAATGGG+GGG - chr1_4:59066054-59066073 None:intergenic 35.0%
GGTCAAAATCTACAAAATGG+GGG - chr1_4:59066055-59066074 None:intergenic 35.0%
CAGACATTGGACAACATATC+CGG + chr1_4:59060313-59060332 Msa0173700:five_prime_UTR 40.0%
! GGGGGTGTAGAAATGAATAA+CGG - chr1_4:59060390-59060409 None:intergenic 40.0%
!! TCCGGAATTTGATTTTGAGG+TGG - chr1_4:59060614-59060633 None:intergenic 40.0%
!! CTCTCCGGAATTTGATTTTG+AGG - chr1_4:59060617-59060636 None:intergenic 40.0%
CTTTCTACAAAGCATGCTGA+TGG + chr1_4:59060700-59060719 Msa0173700:CDS 40.0%
TGGTGGGAATATTATTACCG+TGG + chr1_4:59060762-59060781 Msa0173700:CDS 40.0%
ATTATTACCGTGGAGAGAGA+TGG + chr1_4:59060772-59060791 Msa0173700:CDS 40.0%
TTATTACCGTGGAGAGAGAT+GGG + chr1_4:59060773-59060792 Msa0173700:CDS 40.0%
TGGTCCTCGAATGTGTATTT+AGG + chr1_4:59061027-59061046 Msa0173700:intron 40.0%
AGAGCCTAAATACACATTCG+AGG - chr1_4:59061034-59061053 None:intergenic 40.0%
ATGGCCAAATTAGACCTGTT+TGG - chr1_4:59061320-59061339 None:intergenic 40.0%
TATTACCAACATGTGTGAGG+CGG - chr1_4:59061570-59061589 None:intergenic 40.0%
CCATATTACCAACATGTGTG+AGG - chr1_4:59061573-59061592 None:intergenic 40.0%
!! CCTCACACATGTTGGTAATA+TGG + chr1_4:59061570-59061589 Msa0173700:intron 40.0%
!!! GGTTGTTTTATTTGTGCAGG+TGG + chr1_4:59061597-59061616 Msa0173700:intron 40.0%
AACACAAATCTAGGTGCATC+AGG - chr1_4:59061658-59061677 None:intergenic 40.0%
ATGCACCTAGATTTGTGTTG+TGG + chr1_4:59061659-59061678 Msa0173700:CDS 40.0%
CCATTCCACAACACAAATCT+AGG - chr1_4:59061667-59061686 None:intergenic 40.0%
CCTAGATTTGTGTTGTGGAA+TGG + chr1_4:59061664-59061683 Msa0173700:CDS 40.0%
TGTTGTGGAATGGGAAATTG+AGG + chr1_4:59061674-59061693 Msa0173700:CDS 40.0%
AAAAGAAAACACACTGGAGG+AGG - chr1_4:59061796-59061815 None:intergenic 40.0%
GGGATCAAAAGAAAACACAC+TGG - chr1_4:59061802-59061821 None:intergenic 40.0%
ACTGGCAGGATAAATAATGC+AGG + chr1_4:59061867-59061886 Msa0173700:intron 40.0%
TATCAGGCGTTCAAAAACCT+CGG - chr1_4:59061989-59062008 None:intergenic 40.0%
CTGAACAAAAAGGCTCTATC+AGG - chr1_4:59062005-59062024 None:intergenic 40.0%
! CTGATAGAGCCTTTTTGTTC+AGG + chr1_4:59062003-59062022 Msa0173700:CDS 40.0%
CAGGACAATGAAAAAGTTGG+TGG - chr1_4:59062035-59062054 None:intergenic 40.0%
AAAGTAGGTAGTTGGCTGAA+AGG - chr1_4:59062088-59062107 None:intergenic 40.0%
TCAGTTCTTGGCGAATGAAA+TGG + chr1_4:59062160-59062179 Msa0173700:intron 40.0%
!!! AGTTTTTAAGAGACGGGTTG+GGG - chr1_4:59062265-59062284 None:intergenic 40.0%
!! CAGTTTTTAAGAGACGGGTT+GGG - chr1_4:59062266-59062285 None:intergenic 40.0%
!! TCAGTTTTTAAGAGACGGGT+TGG - chr1_4:59062267-59062286 None:intergenic 40.0%
! GCTTGAGCTATGTGTGATTT+TGG + chr1_4:59062464-59062483 Msa0173700:intron 40.0%
! AACAAATGAAAAGGAGCGCA+AGG - chr1_4:59062551-59062570 None:intergenic 40.0%
!!! GGTCTCTGTAGTTTTTTTCG+AGG - chr1_4:59062888-59062907 None:intergenic 40.0%
TCATATACAGGTGTCTATGC+CGG + chr1_4:59063135-59063154 Msa0173700:intron 40.0%
AATGGTGGTAGCATTATTGG+TGG + chr1_4:59063216-59063235 Msa0173700:CDS 40.0%
TCTCTCCTGTATTGCTTTGA+AGG - chr1_4:59063244-59063263 None:intergenic 40.0%
GTCAAACTGTTGGATCATTC+CGG + chr1_4:59063393-59063412 Msa0173700:CDS 40.0%
AGAAATTGCGTTTGGCAACA+TGG - chr1_4:59063429-59063448 None:intergenic 40.0%
TACCTAGCAGAAATTGCGTT+TGG - chr1_4:59063437-59063456 None:intergenic 40.0%
TGTTTCACCAGTATTCACGT+TGG + chr1_4:59063487-59063506 Msa0173700:intron 40.0%
AACATCACCAACGTGAATAC+TGG - chr1_4:59063497-59063516 None:intergenic 40.0%
TTACAGGAACACGATTCACT+AGG - chr1_4:59063520-59063539 None:intergenic 40.0%
CAAAGAAACAACTCCTTCTG+GGG - chr1_4:59063637-59063656 None:intergenic 40.0%
GCAAAGAAACAACTCCTTCT+GGG - chr1_4:59063638-59063657 None:intergenic 40.0%
TGCAAAGAAACAACTCCTTC+TGG - chr1_4:59063639-59063658 None:intergenic 40.0%
CAGTCAGGCACAAATAAACA+AGG - chr1_4:59064301-59064320 None:intergenic 40.0%
GTTATGTAGTTGTAGTGCAG+TGG + chr1_4:59064370-59064389 Msa0173700:intron 40.0%
GCTATGTAGGATCTAAGGAA+TGG - chr1_4:59064454-59064473 None:intergenic 40.0%
CTTCTGCTATGTAGGATCTA+AGG - chr1_4:59064459-59064478 None:intergenic 40.0%
GGTTGTTTACTTCAAAGCCA+GGG + chr1_4:59064507-59064526 Msa0173700:intron 40.0%
CATCATATCCCTTGTGAGAT+AGG + chr1_4:59064544-59064563 Msa0173700:intron 40.0%
! GGCTTCTTTTGGATAGGAAA+TGG - chr1_4:59064763-59064782 None:intergenic 40.0%
! CTTGATAGATGGTGAGTTGA+AGG + chr1_4:59064797-59064816 Msa0173700:CDS 40.0%
! GATTTGGTCAATTGCATCCA+CGG + chr1_4:59064820-59064839 Msa0173700:CDS 40.0%
TACCTAATGTTTGCACTCCT+TGG - chr1_4:59064848-59064867 None:intergenic 40.0%
GTTTCCAACAACAACGAAGA+AGG - chr1_4:59065228-59065247 None:intergenic 40.0%
TAGTCGTTCTTTACTATCCC+TGG - chr1_4:59065252-59065271 None:intergenic 40.0%
AACACTTGAAACAAGGTCAC+TGG - chr1_4:59065306-59065325 None:intergenic 40.0%
!! CTTCCATAGAAGAGTACTAC+AGG + chr1_4:59065405-59065424 Msa0173700:intron 40.0%
! CATCATGTCTTGATGATTGG+TGG + chr1_4:59065442-59065461 Msa0173700:intron 40.0%
! TCTTGATGATTGGTGGTTCT+GGG + chr1_4:59065449-59065468 Msa0173700:intron 40.0%
ACAATTGGATCCTGAGCATT+TGG - chr1_4:59065681-59065700 None:intergenic 40.0%
! TGCTCAGGATCCAATTGTTT+TGG + chr1_4:59065683-59065702 Msa0173700:CDS 40.0%
! GCTCAGGATCCAATTGTTTT+GGG + chr1_4:59065684-59065703 Msa0173700:CDS 40.0%
!! CTCAGGATCCAATTGTTTTG+GGG + chr1_4:59065685-59065704 Msa0173700:CDS 40.0%
!!! TCAGGATCCAATTGTTTTGG+GGG + chr1_4:59065686-59065705 Msa0173700:CDS 40.0%
ACTCTAACCCCCAAAACAAT+TGG - chr1_4:59065696-59065715 None:intergenic 40.0%
AAGAACTGTGGAATAGCTTG+AGG - chr1_4:59065723-59065742 None:intergenic 40.0%
GCTATTCCACAGTTCTTAGT+TGG + chr1_4:59065726-59065745 Msa0173700:CDS 40.0%
AGATGTCCAACTAAGAACTG+TGG - chr1_4:59065735-59065754 None:intergenic 40.0%
!! TATGTGTTTGGTGTTGCCTT+GGG + chr1_4:59065825-59065844 Msa0173700:CDS 40.0%
!! TTATTGTGTTAGGTTCTGGG+TGG + chr1_4:59065962-59065981 Msa0173700:three_prime_UTR 40.0%
TTGCTAAATGCATGAGCAAG+TGG - chr1_4:59066012-59066031 None:intergenic 40.0%
ACTTGCTCATGCATTTAGCA+AGG + chr1_4:59066011-59066030 Msa0173700:three_prime_UTR 40.0%
AAAATCTACAAAATGGGGGG+TGG - chr1_4:59066051-59066070 None:intergenic 40.0%
! GTTTGCTTGCCACTTGCAAT+TGG - chr1_4:59060292-59060311 None:intergenic 45.0%
TGGCAAGCAAACACAGACAT+TGG + chr1_4:59060300-59060319 Msa0173700:five_prime_UTR 45.0%
TGAAGGTGGAGAAAGAAGGA+GGG - chr1_4:59060410-59060429 None:intergenic 45.0%
GAAGAAGGTGAGTGTAACCA+TGG - chr1_4:59060437-59060456 None:intergenic 45.0%
TTGAATTGGAGGAGGGGAAA+GGG - chr1_4:59060498-59060517 None:intergenic 45.0%
TTTGAATTGGAGGAGGGGAA+AGG - chr1_4:59060499-59060518 None:intergenic 45.0%
!! CAGTGGACTATGTATTGCTC+AGG + chr1_4:59060675-59060694 Msa0173700:CDS 45.0%
CCTCGGTAACAACAACATTG+GGG - chr1_4:59060729-59060748 None:intergenic 45.0%
GCCTCGGTAACAACAACATT+GGG - chr1_4:59060730-59060749 None:intergenic 45.0%
AAGAAACCCATCTCTCTCCA+CGG - chr1_4:59060782-59060801 None:intergenic 45.0%
! TGGAGAGAGATGGGTTTCTT+TGG + chr1_4:59060782-59060801 Msa0173700:CDS 45.0%
! GGAGAGAGATGGGTTTCTTT+GGG + chr1_4:59060783-59060802 Msa0173700:CDS 45.0%
! GATGGGTTTCTTTGGGAAGA+AGG + chr1_4:59060790-59060809 Msa0173700:CDS 45.0%
ATGGTGAGCATAGGATCAGA+AGG - chr1_4:59060832-59060851 None:intergenic 45.0%
TTCTGATCCTATGCTCACCA+TGG + chr1_4:59060831-59060850 Msa0173700:CDS 45.0%
GTAGATAAGCTAGCCGATAG+CGG + chr1_4:59061096-59061115 Msa0173700:intron 45.0%
TTATTTGTGCAGGTGGACAG+TGG + chr1_4:59061604-59061623 Msa0173700:intron 45.0%
!! TGAGTATTGGTGGCAAGATC+AGG + chr1_4:59061740-59061759 Msa0173700:CDS 45.0%
!! GAGTATTGGTGGCAAGATCA+GGG + chr1_4:59061741-59061760 Msa0173700:CDS 45.0%
AGTTCGTGCGTCGAAATCTT+GGG + chr1_4:59061962-59061981 Msa0173700:CDS 45.0%
!! TGGCTCTGACCTGAACAAAA+AGG - chr1_4:59062015-59062034 None:intergenic 45.0%
CTCCGCCAGAACATAAAAGT+AGG - chr1_4:59062103-59062122 None:intergenic 45.0%
!!! GTTTTTAAGAGACGGGTTGG+GGG - chr1_4:59062264-59062283 None:intergenic 45.0%
! GAAGTAAGCTTGTCGCTTCT+TGG - chr1_4:59063029-59063048 None:intergenic 45.0%
!! AAGCAGCTTTTGGGAAAGTG+TGG + chr1_4:59063181-59063200 Msa0173700:CDS 45.0%
TGGAGCCTTCAAAGCAATAC+AGG + chr1_4:59063236-59063255 Msa0173700:CDS 45.0%
!! TATTTTTACGGATCACGGGG+TGG - chr1_4:59063282-59063301 None:intergenic 45.0%
! ACAGTTTGACCCTTTGGCTT+TGG - chr1_4:59063383-59063402 None:intergenic 45.0%
AAGCCAAAGGGTCAAACTGT+TGG + chr1_4:59063383-59063402 Msa0173700:CDS 45.0%
GATCCAACAGTTTGACCCTT+TGG - chr1_4:59063389-59063408 None:intergenic 45.0%
AACTGTTGGATCATTCCGGA+AGG + chr1_4:59063397-59063416 Msa0173700:CDS 45.0%
ACTGTTGGATCATTCCGGAA+GGG + chr1_4:59063398-59063417 Msa0173700:CDS 45.0%
TGCCAAACGCAATTTCTGCT+AGG + chr1_4:59063432-59063451 Msa0173700:CDS 45.0%
ATCGTGTTCCTGTAACCTGT+TGG + chr1_4:59063525-59063544 Msa0173700:intron 45.0%
TTGTTACCTAACCTGCCAAC+AGG - chr1_4:59063543-59063562 None:intergenic 45.0%
TGTTGGCAGGTTAGGTAACA+AGG + chr1_4:59063542-59063561 Msa0173700:intron 45.0%
TTGACGTATGAAACCCCAGA+AGG + chr1_4:59063621-59063640 Msa0173700:CDS 45.0%
ACTAGCAACATGGGAAGGAA+TGG - chr1_4:59063682-59063701 None:intergenic 45.0%
!! AATGGACTAGCAACATGGGA+AGG - chr1_4:59063687-59063706 None:intergenic 45.0%
!! CAGCAATGGACTAGCAACAT+GGG - chr1_4:59063691-59063710 None:intergenic 45.0%
AGGAATGGCCGGAAACATTA+CGG - chr1_4:59064439-59064458 None:intergenic 45.0%
TGTAGGATCTAAGGAATGGC+CGG - chr1_4:59064450-59064469 None:intergenic 45.0%
CGGTTGTTTACTTCAAAGCC+AGG + chr1_4:59064506-59064525 Msa0173700:intron 45.0%
TACTTCAAAGCCAGGGTTTC+AGG + chr1_4:59064514-59064533 Msa0173700:intron 45.0%
ATCCCTTGTGAGATAGGCTT+TGG + chr1_4:59064550-59064569 Msa0173700:intron 45.0%
AGCCAAAGCCTATCTCACAA+GGG - chr1_4:59064555-59064574 None:intergenic 45.0%
AAGCCAAAGCCTATCTCACA+AGG - chr1_4:59064556-59064575 None:intergenic 45.0%
!! TGGCCAATTTCTGGCATGAT+AGG + chr1_4:59064626-59064645 Msa0173700:intron 45.0%
AGGCGCCATCATATAAGTTG+AGG + chr1_4:59064646-59064665 Msa0173700:intron 45.0%
! GATGGTGAGTTGAAGGGATT+TGG + chr1_4:59064804-59064823 Msa0173700:CDS 45.0%
! AGCCAAGGAGTGCAAACATT+AGG + chr1_4:59064843-59064862 Msa0173700:CDS 45.0%
AATCGCGTGGCAACTTAAAG+TGG - chr1_4:59064908-59064927 None:intergenic 45.0%
TTCAAGAGTAGAACCCTTCC+AGG - chr1_4:59065070-59065089 None:intergenic 45.0%
! TCGTTGTTGTTGGAAACTCC+AGG + chr1_4:59065231-59065250 Msa0173700:intron 45.0%
! CGTTGTTGTTGGAAACTCCA+GGG + chr1_4:59065232-59065251 Msa0173700:intron 45.0%
GACATGATGAAGCAGTACAG+CGG - chr1_4:59065431-59065450 None:intergenic 45.0%
! GTCTTGATGATTGGTGGTTC+TGG + chr1_4:59065448-59065467 Msa0173700:intron 45.0%
!!! GATTGGTGGTTCTGGGTTTT+AGG + chr1_4:59065456-59065475 Msa0173700:intron 45.0%
!!! TTGTTTTGGGGGTTAGAGTG+TGG + chr1_4:59065697-59065716 Msa0173700:CDS 45.0%
!! CTATGTGTTTGGTGTTGCCT+TGG + chr1_4:59065824-59065843 Msa0173700:CDS 45.0%
TACTTCAGCTGCTATCTCGT+AGG - chr1_4:59065868-59065887 None:intergenic 45.0%
!!! TTTTCTAAAAAAAAAAAATA+TGG + chr1_4:59062323-59062342 Msa0173700:intron 5.0%
!!! TTTTAAATATTAATCAAATA+TGG - chr1_4:59062849-59062868 None:intergenic 5.0%
AAGGTGGAGAAAGAAGGAGG+GGG - chr1_4:59060408-59060427 None:intergenic 50.0%
GAAGGTGGAGAAAGAAGGAG+GGG - chr1_4:59060409-59060428 None:intergenic 50.0%
GTGAAGGTGGAGAAAGAAGG+AGG - chr1_4:59060411-59060430 None:intergenic 50.0%
AAGGTGAGTGTAACCATGGC+GGG - chr1_4:59060433-59060452 None:intergenic 50.0%
GAAGGTGAGTGTAACCATGG+CGG - chr1_4:59060434-59060453 None:intergenic 50.0%
GGAAAGGGGAATGGAGATGA+GGG - chr1_4:59060483-59060502 None:intergenic 50.0%
TGAATTGGAGGAGGGGAAAG+GGG - chr1_4:59060497-59060516 None:intergenic 50.0%
ATTCCTCCGCAATGGAGCAA+CGG - chr1_4:59060570-59060589 None:intergenic 50.0%
!!! GGTGGTTTTAGTCGGAGATG+CGG - chr1_4:59060596-59060615 None:intergenic 50.0%
ACCAACAACCACACAGTCGA+CGG - chr1_4:59060647-59060666 None:intergenic 50.0%
! CCCCAATGTTGTTGTTACCG+AGG + chr1_4:59060726-59060745 Msa0173700:CDS 50.0%
CGCCTCGGTAACAACAACAT+TGG - chr1_4:59060731-59060750 None:intergenic 50.0%
ACCAACTCGATCTTTCGCCT+CGG - chr1_4:59060746-59060765 None:intergenic 50.0%
!! AGGCGAAAGATCGAGTTGGT+GGG + chr1_4:59060746-59060765 Msa0173700:CDS 50.0%
TGATCCTATGCTCACCATGG+TGG + chr1_4:59060834-59060853 Msa0173700:CDS 50.0%
CATACCACCATGGTGAGCAT+AGG - chr1_4:59060841-59060860 None:intergenic 50.0%
CGTAATGTGGCGCATGCAAT+TGG + chr1_4:59060897-59060916 Msa0173700:intron 50.0%
GTGGAATGGGAAATTGAGGC+CGG + chr1_4:59061678-59061697 Msa0173700:CDS 50.0%
!! GGCAAATCAGTTGGCTTTCC+CGG - chr1_4:59061706-59061725 None:intergenic 50.0%
GAAAACACACTGGAGGAGGA+GGG - chr1_4:59061792-59061811 None:intergenic 50.0%
AGAAAACACACTGGAGGAGG+AGG - chr1_4:59061793-59061812 None:intergenic 50.0%
GTGACAGGGTCATGAGGAAT+CGG + chr1_4:59061933-59061952 Msa0173700:intron 50.0%
GAGTTCGTGCGTCGAAATCT+TGG + chr1_4:59061961-59061980 Msa0173700:CDS 50.0%
GTTCGTGCGTCGAAATCTTG+GGG + chr1_4:59061963-59061982 Msa0173700:CDS 50.0%
TCAAATCCATCGTTGAGCGC+CGG + chr1_4:59062764-59062783 Msa0173700:intron 50.0%
AAATATCCGGCGCTCAACGA+TGG - chr1_4:59062773-59062792 None:intergenic 50.0%
!! CAGCTTTTGGGAAAGTGTGG+AGG + chr1_4:59063184-59063203 Msa0173700:CDS 50.0%
GTGTGGAGGCTCGAACAAAA+TGG + chr1_4:59063198-59063217 Msa0173700:CDS 50.0%
TGGAGGCTCGAACAAAATGG+TGG + chr1_4:59063201-59063220 Msa0173700:CDS 50.0%
GCAACATGGTAAGTCCCTTC+CGG - chr1_4:59063415-59063434 None:intergenic 50.0%
TGTTCCTGTAACCTGTTGGC+AGG + chr1_4:59063529-59063548 Msa0173700:intron 50.0%
CTAACCTGCCAACAGGTTAC+AGG - chr1_4:59063536-59063555 None:intergenic 50.0%
CTGTAACCTGTTGGCAGGTT+AGG + chr1_4:59063534-59063553 Msa0173700:intron 50.0%
!! GCAGCAATGGACTAGCAACA+TGG - chr1_4:59063692-59063711 None:intergenic 50.0%
ACAGACAGTGGTTGCAGCAA+TGG - chr1_4:59063705-59063724 None:intergenic 50.0%
ACGTCTTGGTACCTTACTGC+AGG + chr1_4:59063838-59063857 Msa0173700:intron 50.0%
TGGCCTACTGCAAGAGCTTA+TGG + chr1_4:59064175-59064194 Msa0173700:intron 50.0%
CAGCCATAAGCTCTTGCAGT+AGG - chr1_4:59064181-59064200 None:intergenic 50.0%
GGAATGGCCGGAAACATTAC+GGG - chr1_4:59064438-59064457 None:intergenic 50.0%
AAAGCCAGGGTTTCAGGATC+AGG + chr1_4:59064520-59064539 Msa0173700:intron 50.0%
ATGTCCTGATCCTGAAACCC+TGG - chr1_4:59064527-59064546 None:intergenic 50.0%
GCGCCTATCATGCCAGAAAT+TGG - chr1_4:59064632-59064651 None:intergenic 50.0%
GAAATGGAAACTGCCGCAAC+TGG - chr1_4:59064747-59064766 None:intergenic 50.0%
TGGTGCTCGGTTAGGGAAAA+GGG - chr1_4:59065047-59065066 None:intergenic 50.0%
AAGAGTAGAACCCTTCCAGG+TGG - chr1_4:59065067-59065086 None:intergenic 50.0%
ATTGGAGGGGCTACCAATTC+TGG + chr1_4:59065094-59065113 Msa0173700:CDS 50.0%
TTGGAGGGGCTACCAATTCT+GGG + chr1_4:59065095-59065114 Msa0173700:CDS 50.0%
AAACAAGGTCACTGGACGTC+TGG - chr1_4:59065298-59065317 None:intergenic 50.0%
CGGCCTGTAGTACTCTTCTA+TGG - chr1_4:59065411-59065430 None:intergenic 50.0%
AAGGAACAGCCCCTCAAATC+CGG - chr1_4:59065796-59065815 None:intergenic 50.0%
GATTTGAGGGGCTGTTCCTT+GGG + chr1_4:59065796-59065815 Msa0173700:CDS 50.0%
ATTTGAGGGGCTGTTCCTTG+GGG + chr1_4:59065797-59065816 Msa0173700:CDS 50.0%
CAAACACATAGTTGCCCCCA+AGG - chr1_4:59065815-59065834 None:intergenic 50.0%
CTTGGGGGCAACTATGTGTT+TGG + chr1_4:59065813-59065832 Msa0173700:CDS 50.0%
!! TGTTTGGTGTTGCCTTGGGA+AGG + chr1_4:59065829-59065848 Msa0173700:CDS 50.0%
! CGCAGAGAGTGTACAAGTAG+CGG + chr1_4:59065901-59065920 Msa0173700:CDS 50.0%
! GTTCTGGGTGGCTTCTGTTA+CGG + chr1_4:59065974-59065993 Msa0173700:three_prime_UTR 50.0%
TTCTGGGTGGCTTCTGTTAC+GGG + chr1_4:59065975-59065994 Msa0173700:three_prime_UTR 50.0%
CGGGTGAAGGTGGAGAAAGA+AGG - chr1_4:59060414-59060433 None:intergenic 55.0%
!! AGTGTAACCATGGCGGGTGA+AGG - chr1_4:59060427-59060446 None:intergenic 55.0%
GGTTTGAGAGGGTGGGAAGA+AGG - chr1_4:59060452-59060471 None:intergenic 55.0%
GGAGAAGGGTTTGAGAGGGT+GGG - chr1_4:59060459-59060478 None:intergenic 55.0%
ATGGAGATGAGGGCGGAGAA+GGG - chr1_4:59060473-59060492 None:intergenic 55.0%
AATGGAGATGAGGGCGGAGA+AGG - chr1_4:59060474-59060493 None:intergenic 55.0%
AAGGGGAATGGAGATGAGGG+CGG - chr1_4:59060480-59060499 None:intergenic 55.0%
GGGAAAGGGGAATGGAGATG+AGG - chr1_4:59060484-59060503 None:intergenic 55.0%
GGAGACGGAGAATGGGGTTA+TGG - chr1_4:59060549-59060568 None:intergenic 55.0%
AGCAACGGAGACGGAGAATG+GGG - chr1_4:59060555-59060574 None:intergenic 55.0%
GAGCAACGGAGACGGAGAAT+GGG - chr1_4:59060556-59060575 None:intergenic 55.0%
!! GGTTTTAGTCGGAGATGCGG+TGG - chr1_4:59060593-59060612 None:intergenic 55.0%
AACCACACAGTCGACGGATG+AGG - chr1_4:59060641-59060660 None:intergenic 55.0%
! TCCGTCGACTGTGTGGTTGT+TGG + chr1_4:59060643-59060662 Msa0173700:CDS 55.0%
GTCGACTGTGTGGTTGTTGG+TGG + chr1_4:59060646-59060665 Msa0173700:CDS 55.0%
! GACTGTGTGGTTGTTGGTGG+TGG + chr1_4:59060649-59060668 Msa0173700:CDS 55.0%
!! GTTGTTGGTGGTGGCATCAG+TGG + chr1_4:59060658-59060677 Msa0173700:CDS 55.0%
ACCGAGGCGAAAGATCGAGT+TGG + chr1_4:59060742-59060761 Msa0173700:CDS 55.0%
!! GAGGCGAAAGATCGAGTTGG+TGG + chr1_4:59060745-59060764 Msa0173700:CDS 55.0%
TGACACCGCCTCACACATGT+TGG + chr1_4:59061562-59061581 Msa0173700:intron 55.0%
GCAGGTGGACAGTGGTTTGA+AGG + chr1_4:59061612-59061631 Msa0173700:intron 55.0%
! ATTGGTGGCAAGATCAGGGC+TGG + chr1_4:59061745-59061764 Msa0173700:CDS 55.0%
ACGAAGGTGACAGGGTCATG+AGG + chr1_4:59061927-59061946 Msa0173700:intron 55.0%
!! TTAAGAGACGGGTTGGGGGA+TGG - chr1_4:59062260-59062279 None:intergenic 55.0%
TAGGCGTCTGCCAAAGCCAA+AGG + chr1_4:59063370-59063389 Msa0173700:intron 55.0%
AGGCGTCTGCCAAAGCCAAA+GGG + chr1_4:59063371-59063390 Msa0173700:intron 55.0%
! GAAAGTGCATCTGCAGCAGC+AGG - chr1_4:59064708-59064727 None:intergenic 55.0%
ATGGAAACTGCCGCAACTGG+AGG - chr1_4:59064744-59064763 None:intergenic 55.0%
CAATTGCATCCACGGAGCCA+AGG + chr1_4:59064828-59064847 Msa0173700:CDS 55.0%
GTGGTGCTCGGTTAGGGAAA+AGG - chr1_4:59065048-59065067 None:intergenic 55.0%
TTCCAGGTGGTGCTCGGTTA+GGG - chr1_4:59065054-59065073 None:intergenic 55.0%
TAACCGAGCACCACCTGGAA+GGG + chr1_4:59065054-59065073 Msa0173700:CDS 55.0%
GGATTTGAGGGGCTGTTCCT+TGG + chr1_4:59065795-59065814 Msa0173700:CDS 55.0%
TTTGAGGGGCTGTTCCTTGG+GGG + chr1_4:59065798-59065817 Msa0173700:CDS 55.0%
! TGCCTTGGGAAGGTGTGTTG+AGG + chr1_4:59065839-59065858 Msa0173700:CDS 55.0%
! GCCTTGGGAAGGTGTGTTGA+GGG + chr1_4:59065840-59065859 Msa0173700:CDS 55.0%
TCCCTCAACACACCTTCCCA+AGG - chr1_4:59065844-59065863 None:intergenic 55.0%
TTCTCCACCTTCACCCGCCA+TGG + chr1_4:59060417-59060436 Msa0173700:exon 60.0%
!! GTAACCATGGCGGGTGAAGG+TGG - chr1_4:59060424-59060443 None:intergenic 60.0%
CGGAGAAGGGTTTGAGAGGG+TGG - chr1_4:59060460-59060479 None:intergenic 60.0%
GGGCGGAGAAGGGTTTGAGA+GGG - chr1_4:59060463-59060482 None:intergenic 60.0%
AGGGCGGAGAAGGGTTTGAG+AGG - chr1_4:59060464-59060483 None:intergenic 60.0%
TGGAGGAGGGGAAAGGGGAA+TGG - chr1_4:59060492-59060511 None:intergenic 60.0%
GGAGCAACGGAGACGGAGAA+TGG - chr1_4:59060557-59060576 None:intergenic 60.0%
CCGCAATGGAGCAACGGAGA+CGG - chr1_4:59060564-59060583 None:intergenic 60.0%
CCGTCTCCGTTGCTCCATTG+CGG + chr1_4:59060561-59060580 Msa0173700:CDS 60.0%
TCTCCGTTGCTCCATTGCGG+AGG + chr1_4:59060564-59060583 Msa0173700:CDS 60.0%
! TGCGGTGGATTCCTCCGCAA+TGG - chr1_4:59060578-59060597 None:intergenic 60.0%
GTCGACGGATGAGGACTCTC+CGG - chr1_4:59060632-59060651 None:intergenic 60.0%
! GTCCTCATCCGTCGACTGTG+TGG + chr1_4:59060636-59060655 Msa0173700:CDS 60.0%
TGGGAAATTGAGGCCGGTGC+CGG + chr1_4:59061684-59061703 Msa0173700:CDS 60.0%
!! TCAGTTGGCTTTCCCGGCAC+CGG - chr1_4:59061700-59061719 None:intergenic 60.0%
!! GGCAAGATCAGGGCTGGCTT+TGG + chr1_4:59061751-59061770 Msa0173700:CDS 60.0%
!! AGGGCTGGCTTTGGAGCACT+TGG + chr1_4:59061760-59061779 Msa0173700:CDS 60.0%
GTTTGCACTCCTTGGCTCCG+TGG - chr1_4:59064840-59064859 None:intergenic 60.0%
TTCCCTAACCGAGCACCACC+TGG + chr1_4:59065049-59065068 Msa0173700:CDS 60.0%
CTTCCAGGTGGTGCTCGGTT+AGG - chr1_4:59065055-59065074 None:intergenic 60.0%
CTAACCGAGCACCACCTGGA+AGG + chr1_4:59065053-59065072 Msa0173700:CDS 60.0%
GAACCCTTCCAGGTGGTGCT+CGG - chr1_4:59065060-59065079 None:intergenic 60.0%
GGGAAATTGAGGCCGGTGCC+GGG + chr1_4:59061685-59061704 Msa0173700:CDS 65.0%
GCGTCGAAATCTTGGGGCCG+AGG + chr1_4:59061969-59061988 Msa0173700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59060282 59066184 59060282 ID=Msa0173700;Name=Msa0173700
chr1_4 mRNA 59060282 59066184 59060282 ID=Msa0173700-mRNA-1;Parent=Msa0173700;Name=Msa0173700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=134|0.88|0.9|1|0.88|0.8|10|264|545
chr1_4 exon 59060282 59060388 59060282 ID=Msa0173700-mRNA-1:exon:18440;Parent=Msa0173700-mRNA-1
chr1_4 exon 59060409 59060855 59060409 ID=Msa0173700-mRNA-1:exon:18441;Parent=Msa0173700-mRNA-1
chr1_4 exon 59061634 59061801 59061634 ID=Msa0173700-mRNA-1:exon:18442;Parent=Msa0173700-mRNA-1
chr1_4 exon 59061940 59062024 59061940 ID=Msa0173700-mRNA-1:exon:18443;Parent=Msa0173700-mRNA-1
chr1_4 exon 59063145 59063292 59063145 ID=Msa0173700-mRNA-1:exon:18444;Parent=Msa0173700-mRNA-1
chr1_4 exon 59063373 59063453 59063373 ID=Msa0173700-mRNA-1:exon:18445;Parent=Msa0173700-mRNA-1
chr1_4 exon 59063551 59063722 59063551 ID=Msa0173700-mRNA-1:exon:18446;Parent=Msa0173700-mRNA-1
chr1_4 exon 59064705 59064864 59064705 ID=Msa0173700-mRNA-1:exon:18447;Parent=Msa0173700-mRNA-1
chr1_4 exon 59065026 59065129 59065026 ID=Msa0173700-mRNA-1:exon:18448;Parent=Msa0173700-mRNA-1
chr1_4 exon 59065621 59066184 59065621 ID=Msa0173700-mRNA-1:exon:18449;Parent=Msa0173700-mRNA-1
chr1_4 five_prime_UTR 59060282 59060388 59060282 ID=Msa0173700-mRNA-1:five_prime_utr;Parent=Msa0173700-mRNA-1
chr1_4 five_prime_UTR 59060409 59060435 59060409 ID=Msa0173700-mRNA-1:five_prime_utr;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59060436 59060855 59060436 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59061634 59061801 59061634 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59061940 59062024 59061940 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59063145 59063292 59063145 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59063373 59063453 59063373 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59063551 59063722 59063551 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59064705 59064864 59064705 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59065026 59065129 59065026 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 CDS 59065621 59065920 59065621 ID=Msa0173700-mRNA-1:cds;Parent=Msa0173700-mRNA-1
chr1_4 three_prime_UTR 59065921 59066184 59065921 ID=Msa0173700-mRNA-1:three_prime_utr;Parent=Msa0173700-mRNA-1
Gene Sequence

>Msa0173700

ATGGTTACACTCACCTTCTTCCCACCCTCTCAAACCCTTCTCCGCCCTCATCTCCATTCCCCTTTCCCCTCCTCCAATTCAAAATCAAAATTCATTCGCAATCGCAGTCACCATAACCCCATTCTCCGTCTCCGTTGCTCCATTGCGGAGGAATCCACCGCATCTCCGACTAAAACCACCTCAAAATCAAATTCCGGAGAGTCCTCATCCGTCGACTGTGTGGTTGTTGGTGGTGGCATCAGTGGACTATGTATTGCTCAGGCTCTTTCTACAAAGCATGCTGATGGTGTCCCCAATGTTGTTGTTACCGAGGCGAAAGATCGAGTTGGTGGGAATATTATTACCGTGGAGAGAGATGGGTTTCTTTGGGAAGAAGGTCCTAATAGTTTTCAACCTTCTGATCCTATGCTCACCATGGTGGACGATCTTGTTTTGGGTGATCCTGATGCACCTAGATTTGTGTTGTGGAATGGGAAATTGAGGCCGGTGCCGGGAAAGCCAACTGATTTGCCTTTCTTTGACTTAATGAGTATTGGTGGCAAGATCAGGGCTGGCTTTGGAGCACTTGGAATTCGCCCTCCTCCTCCAGGTCATGAGGAATCGGTTGAAGAGTTCGTGCGTCGAAATCTTGGGGCCGAGGTTTTTGAACGCCTGATAGAGCCTTTTTGTTCAGGTGTCTATGCCGGCGATCCTTCAAAATTAAGTATGAAAGCAGCTTTTGGGAAAGTGTGGAGGCTCGAACAAAATGGTGGTAGCATTATTGGTGGAGCCTTCAAAGCAATACAGGAGAGAAATAAAGCTTCAAAACCACCCCGTGATCCGCGTCTGCCAAAGCCAAAGGGTCAAACTGTTGGATCATTCCGGAAGGGACTTACCATGTTGCCAAACGCAATTTCTGCTAGGTTAGGTAACAAGGTGAAGTTATCTTGGAAGCTTTTAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACGTATGAAACCCCAGAAGGAGTTGTTTCTTTGCAAAGCAAGACTGTTATCATGACCATTCCTTCCCATGTTGCTAGTCCATTGCTGCAACCACTGTCTCCTGCTGCTGCAGATGCACTTTCAAAGTTTTATTATCCTCCAGTTGCGGCAGTTTCCATTTCCTATCCAAAAGAAGCCATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGATTTGGTCAATTGCATCCACGGAGCCAAGGAGTGCAAACATTAGGAACTATATACAGCTCATCCCTTTTCCCTAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGGGCTACCAATTCTGGGATTTTATCAAAGACGGAGGGTGAACTTGTTGAAGCAGTTGATCGAGATTTGAGAAAAATCCTTATAAATCCAAATGCTCAGGATCCAATTGTTTTGGGGGTTAGAGTGTGGCCTCAAGCTATTCCACAGTTCTTAGTTGGACATCTTGATCTTCTAGATGCTGCTAAAGTTTCTCTTAAAAATACCGGATTTGAGGGGCTGTTCCTTGGGGGCAACTATGTGTTTGGTGTTGCCTTGGGAAGGTGTGTTGAGGGAGCCTACGAGATAGCAGCTGAAGTAAATGATTTTCTCTCGCAGAGAGTGTACAAGTAG
Protein sequence

>Msa0173700

MVTLTFFPPSQTLLRPHLHSPFPSSNSKSKFIRNRSHHNPILRLRCSIAEESTASPTKTTSKSNSGESSSVDCVVVGGGISGLCIAQALSTKHADGVPNVVVTEAKDRVGGNIITVERDGFLWEEGPNSFQPSDPMLTMVDDLVLGDPDAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKIRAGFGALGIRPPPPGHEESVEEFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEQNGGSIIGGAFKAIQERNKASKPPRDPRLPKPKGQTVGSFRKGLTMLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASPLLQPLSPAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVQTLGTIYSSSLFPNRAPPGRVLLLNYIGGATNSGILSKTEGELVEAVDRDLRKILINPNAQDPIVLGVRVWPQAIPQFLVGHLDLLDAAKVSLKNTGFEGLFLGGNYVFGVALGRCVEGAYEIAAEVNDFLSQRVYK*