AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907520 MtrunA17_Chr6g0456031 88.090 487 12 3 1 442 1 486 0.0 835
Msa0907520 MtrunA17_Chr1g0204511 67.139 423 96 1 59 438 38 460 0.0 584
Msa0907520 MtrunA17_Chr6g0456021 96.000 75 3 0 368 442 10 84 2.60e-48 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907520 AT1G19920.1 67.901 486 102 5 1 442 1 476 0.0 662
Msa0907520 AT4G14680.1 64.238 453 110 3 38 438 8 460 0.0 582
Msa0907520 AT3G22890.1 65.455 440 102 3 37 429 13 449 0.0 579
Msa0907520 AT5G43780.1 67.542 419 89 3 58 432 41 456 0.0 570
Msa0907520 AT4G14680.2 63.789 417 99 3 38 402 8 424 0.0 527

Find 140 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAAATTTGATTCTTAAA+AGG 0.151066 6_2:-6148158 None:intergenic
CCAGCTGGAAATTGGCTTAT+TGG 0.189416 6_2:+6150563 Msa0907520:CDS
AGAAACTAATTGTAACTTAA+TGG 0.217487 6_2:-6148541 None:intergenic
CTTAATGGTTAGAGACATTA+TGG 0.240392 6_2:-6148526 None:intergenic
TCTTCTAATGTTGGGTTGAT+TGG 0.284523 6_2:+6149044 Msa0907520:CDS
TCATTACCCCAGCTGGAAAT+TGG 0.286151 6_2:+6150555 Msa0907520:CDS
TGTATTGGTGGGACCATAAT+TGG 0.287618 6_2:-6148260 None:intergenic
AAGTTATCTTGAAGAACTTA+TGG 0.295641 6_2:+6153374 Msa0907520:three_prime_UTR
AAGTTCTTCAAGATAACTTA+TGG 0.300359 6_2:-6153370 None:intergenic
TTAACAAGGCATGACCATTA+TGG 0.305379 6_2:-6150724 None:intergenic
AGATGCATCAAAATATGAAT+TGG 0.307760 6_2:-6148229 None:intergenic
ATAACAACCACCTATGACTA+TGG 0.315948 6_2:-6148392 None:intergenic
TTGGCTTATTGGAGGAGATT+TGG 0.324311 6_2:+6150574 Msa0907520:CDS
TAATGAGTTTAGGCCTTGTT+TGG 0.326623 6_2:+6153221 Msa0907520:three_prime_UTR
GAATTCTTCACGAAGTTGTT+TGG 0.332061 6_2:-6150651 None:intergenic
TGAAAATGAAAGAGAATCTA+AGG 0.339569 6_2:+6148791 Msa0907520:CDS
TTTCATTTCCTAATGAGTTT+AGG 0.340392 6_2:+6153211 Msa0907520:three_prime_UTR
CGCCTTTCAGTTAAGAAATC+CGG 0.363354 6_2:+6150700 Msa0907520:CDS
TTTCTTCCAAAACCCACTTT+TGG 0.368462 6_2:+6148639 Msa0907520:CDS
GTGGAGCAGGGTGAGAATAT+TGG 0.374902 6_2:-6148198 None:intergenic
CAACATCATGATCAAGAATT+CGG 0.380527 6_2:+6153143 Msa0907520:three_prime_UTR
AGACCATCATTGTATTTGAT+AGG 0.381497 6_2:-6150608 None:intergenic
AATTCTTCACGAAGTTGTTT+GGG 0.383556 6_2:-6150650 None:intergenic
ATATTGTTGGTATTCTTAGA+AGG 0.384953 6_2:+6149078 Msa0907520:CDS
TTGTTACCAAAAGTGGGTTT+TGG 0.396011 6_2:-6148645 None:intergenic
AAACAAGGCCTAAACTCATT+AGG 0.402457 6_2:-6153219 None:intergenic
GATGAGACTAAAGAGAGAAT+TGG 0.403307 6_2:+6149017 Msa0907520:CDS
GATTGTTAAGAGTAAAACTT+AGG 0.405988 6_2:+6153093 Msa0907520:three_prime_UTR
GAGACATTATGGGAAATTGA+TGG 0.406457 6_2:-6148515 None:intergenic
TTGGATCTTCTTCTAATGTT+GGG 0.411009 6_2:+6149036 Msa0907520:CDS
TGCATGTGATTGGTGAAGGT+TGG 0.412816 6_2:+6148871 Msa0907520:CDS
GCATGTGATTGGTGAAGGTT+GGG 0.416423 6_2:+6148872 Msa0907520:CDS
TCCTCGACGTAAGGCAATCC+TGG 0.418206 6_2:-6150530 None:intergenic
TAATGGATTGTTACCAAAAG+TGG 0.419831 6_2:-6148652 None:intergenic
GGGTGTATTAGTAGATCTTA+TGG 0.425869 6_2:+6148764 Msa0907520:CDS
ATTGGATCTTCTTCTAATGT+TGG 0.426404 6_2:+6149035 Msa0907520:CDS
TCCTGGAGCGGTTGTTCCCC+AGG 0.427533 6_2:-6150513 None:intergenic
TTATGGGAAATTGATGGTTA+TGG 0.427762 6_2:-6148509 None:intergenic
TTATTGCTTCATCCTCTTGG+AGG 0.441232 6_2:+6150797 Msa0907520:CDS
AGAGGATGAAGCAATAAAAT+CGG 0.442710 6_2:-6150791 None:intergenic
TCCCTCATGAAACCCTTCAA+TGG 0.443998 6_2:-6148900 None:intergenic
TTAAAAGATGCAATTTGTAT+TGG 0.444130 6_2:-6148275 None:intergenic
TGGTCGCGATCCTGCTGGTA+TGG 0.444578 6_2:+6151525 Msa0907520:CDS
GATGCATCAAAATATGAATT+GGG 0.445762 6_2:-6148228 None:intergenic
AAAGATGCAATTTGTATTGG+TGG 0.449349 6_2:-6148272 None:intergenic
TTTGAATGGGTGCATGTGAT+TGG 0.451287 6_2:+6148861 Msa0907520:CDS
TCATCAATAGACAAAACAAT+AGG 0.464015 6_2:-6148996 None:intergenic
GAAATTGATGGTTATGGTGT+TGG 0.467521 6_2:-6148503 None:intergenic
TGGGTCACCCAACCGAGAAA+AGG 0.474264 6_2:+6151545 Msa0907520:CDS
GGTGCCAACTTCTATATTGT+TGG 0.475062 6_2:+6151505 Msa0907520:CDS
ATTGTTGGTCGCGATCCTGC+TGG 0.478353 6_2:+6151520 Msa0907520:CDS
AATTCACTTAGGTTGAATGA+TGG 0.481658 6_2:+6148951 Msa0907520:CDS
ACCTGGGGAACAACCGCTCC+AGG 0.486179 6_2:+6150512 Msa0907520:CDS
ATATGAATTGGGACTGAAAG+TGG 0.491966 6_2:-6148217 None:intergenic
CCAATAAGCCAATTTCCAGC+TGG 0.501071 6_2:-6150563 None:intergenic
CGAATTCTTGATCATGATGT+TGG 0.501090 6_2:-6153142 None:intergenic
CTTGGGCACATAAATCCATC+TGG 0.501128 6_2:-6152939 None:intergenic
GACTTGTATGACCCTGATCA+TGG 0.501622 6_2:+6151568 Msa0907520:CDS
TTAATGGTTAGAGACATTAT+GGG 0.501942 6_2:-6148525 None:intergenic
AACATGTTCGCCATAGTCAT+AGG 0.503235 6_2:+6148382 Msa0907520:five_prime_UTR
GGACCTGATGGGGATATTGT+TGG 0.504304 6_2:+6149065 Msa0907520:CDS
AGAGAGTAAGAGAAGAACGT+GGG 0.505317 6_2:-6148478 None:intergenic
ACACTATCTAATAGAACTTA+CGG 0.505920 6_2:-6153439 None:intergenic
AGGTTGGGCTAGTCCATTGA+AGG 0.507084 6_2:+6148887 Msa0907520:CDS
AAGATGCAATTTGTATTGGT+GGG 0.507311 6_2:-6148271 None:intergenic
AAACCTATCAAATACAATGA+TGG 0.508307 6_2:+6150605 Msa0907520:CDS
AAGAAAGAATAGCTAGAACC+TGG 0.509563 6_2:+6150495 Msa0907520:CDS
GGGTCACCCAACCGAGAAAA+GGG 0.511039 6_2:+6151546 Msa0907520:CDS
GCATGCCATTGAACTTCAGT+TGG 0.512655 6_2:-6151463 None:intergenic
TTAAGAAATCCGGTCCATAA+TGG 0.512744 6_2:+6150710 Msa0907520:CDS
ACAAGAACTTTCCATCCACT+TGG 0.514482 6_2:-6152957 None:intergenic
GTGAGAATATTGGACTGAAA+AGG 0.514930 6_2:-6148188 None:intergenic
CAATAAGCCAATTTCCAGCT+GGG 0.515649 6_2:-6150562 None:intergenic
TTGGGTTGATTGGACCTGAT+GGG 0.520511 6_2:+6149054 Msa0907520:CDS
CAGGTCCAACTGAAGTTCAA+TGG 0.520945 6_2:+6151458 Msa0907520:intron
TGGATTGGATTCACAAGAAG+TGG 0.523625 6_2:-6148360 None:intergenic
GCTGGAAATTGGCTTATTGG+AGG 0.523653 6_2:+6150566 Msa0907520:CDS
GAGGAGGTCATTACCCCAGC+TGG 0.525207 6_2:+6150548 Msa0907520:CDS
ATACCAACAATATCCCCATC+AGG 0.526353 6_2:-6149068 None:intergenic
ATGATGGTCTTGATAACTAC+AGG 0.527746 6_2:+6150621 Msa0907520:CDS
GTTGGGTTGATTGGACCTGA+TGG 0.530522 6_2:+6149053 Msa0907520:CDS
GCGAAGGCACGGATAAATGC+AGG 0.536255 6_2:+6151484 Msa0907520:CDS
GAGAGTAAGAGAAGAACGTG+GGG 0.539321 6_2:-6148477 None:intergenic
AGAAAGAATAGCTAGAACCT+GGG 0.539463 6_2:+6150496 Msa0907520:CDS
GGTCGCGATCCTGCTGGTAT+GGG 0.540104 6_2:+6151526 Msa0907520:CDS
ATGTTAAGCTTCTCGAGACC+AGG 0.540824 6_2:-6151613 None:intergenic
CTATGGCGAACATGTTGGAT+TGG 0.542474 6_2:-6148375 None:intergenic
GAAAATCTTTAGCACGGCTA+GGG 0.547824 6_2:-6152160 None:intergenic
GCTCTTTGATAGAACCAGAT+GGG 0.548424 6_2:+6148742 Msa0907520:CDS
AATGGATTGTTACCAAAAGT+GGG 0.548530 6_2:-6148651 None:intergenic
TTCAATGGCATGCGAAGGCA+CGG 0.550427 6_2:+6151473 Msa0907520:CDS
GATTTATGTGCCCAAGTGGA+TGG 0.551324 6_2:+6152946 Msa0907520:CDS
TCTCTTTATATCTGGAACCA+AGG 0.552725 6_2:+6152181 Msa0907520:CDS
CAAGAACTTTCCATCCACTT+GGG 0.554086 6_2:-6152956 None:intergenic
AAGGTGCTTAGCATGGCTCC+TGG 0.555425 6_2:+6151595 Msa0907520:CDS
ATTGGGACTGAAAGTGGAGC+AGG 0.555886 6_2:-6148211 None:intergenic
TATGACTATGGCGAACATGT+TGG 0.556711 6_2:-6148380 None:intergenic
ATTGTTAAGAGTAAAACTTA+GGG 0.556928 6_2:+6153094 Msa0907520:three_prime_UTR
GCGACCAACAATATAGAAGT+TGG 0.559340 6_2:-6151509 None:intergenic
AAAGTTAAGAGAAGAATGCA+AGG 0.565798 6_2:+6148702 Msa0907520:CDS
GTAATGACCTCCTCGACGTA+AGG 0.566010 6_2:-6150539 None:intergenic
AATATAAGAATAGTTTGACT+TGG 0.566731 6_2:-6153332 None:intergenic
GACCGGATTTCTTAACTGAA+AGG 0.569641 6_2:-6150702 None:intergenic
CTCTTTGATAGAACCAGATG+GGG 0.576508 6_2:+6148743 Msa0907520:CDS
AGAAAATCTTTAGCACGGCT+AGG 0.576934 6_2:-6152161 None:intergenic
GGTTGCAGCTTATGACACTA+AGG 0.577228 6_2:+6152115 Msa0907520:intron
GCAATACTACTTACCCTGAA+AGG 0.578442 6_2:-6151640 None:intergenic
ACGAGTATCGTTCATTAACA+AGG 0.579648 6_2:-6150738 None:intergenic
GTTGGGTGACCCATACCAGC+AGG 0.582204 6_2:-6151535 None:intergenic
GTCCATTGAAGGGTTTCATG+AGG 0.585950 6_2:+6148898 Msa0907520:CDS
TAAAGAGAAAATCTTTAGCA+CGG 0.586779 6_2:-6152166 None:intergenic
AGAATATTGGACTGAAAAGG+AGG 0.590066 6_2:-6148185 None:intergenic
GAGAGAGTAAGAGAAGAACG+TGG 0.592168 6_2:-6148479 None:intergenic
AGTGGAGAGAATCCACCAGA+TGG 0.593721 6_2:+6152924 Msa0907520:CDS
TCCATTGAAGGGTTTCATGA+GGG 0.593890 6_2:+6148899 Msa0907520:CDS
TGACACTAAGGTAAACAAGA+TGG 0.598361 6_2:+6152127 Msa0907520:CDS
TCGTCAACGTCTATTAGACA+TGG 0.599665 6_2:+6150757 Msa0907520:CDS
TGGGTGCATGTGATTGGTGA+AGG 0.599785 6_2:+6148867 Msa0907520:CDS
AAGGCATGACCATTATGGAC+CGG 0.612091 6_2:-6150719 None:intergenic
GGTTGGGCTAGTCCATTGAA+GGG 0.615476 6_2:+6148888 Msa0907520:CDS
TGGGTTGATTGGACCTGATG+GGG 0.619608 6_2:+6149055 Msa0907520:CDS
AGCTCTTTGATAGAACCAGA+TGG 0.623127 6_2:+6148741 Msa0907520:CDS
TCCAGGATTGCCTTACGTCG+AGG 0.628216 6_2:+6150529 Msa0907520:CDS
TGAAGTTCAATGGCATGCGA+AGG 0.632102 6_2:+6151468 Msa0907520:CDS
GAAAGAATAGCTAGAACCTG+GGG 0.638025 6_2:+6150497 Msa0907520:CDS
AACTTCGTGAAGAATTCGAT+AGG 0.647589 6_2:+6150657 Msa0907520:CDS
AATAAGCCAATTTCCAGCTG+GGG 0.648869 6_2:-6150561 None:intergenic
ATGTTCGCCATAGTCATAGG+TGG 0.662506 6_2:+6148385 Msa0907520:five_prime_UTR
TATGTCTAAGCAGATAACAC+AGG 0.664654 6_2:-6153023 None:intergenic
GACGTAAGGCAATCCTGGAG+CGG 0.664765 6_2:-6150525 None:intergenic
CGTCAACGTCTATTAGACAT+GGG 0.666925 6_2:+6150758 Msa0907520:CDS
GGGCACATAAATCCATCTGG+TGG 0.669860 6_2:-6152936 None:intergenic
GATGGATTTATGTGCCCAAG+TGG 0.673535 6_2:+6152942 Msa0907520:CDS
AGGATTGCCTTACGTCGAGG+AGG 0.684280 6_2:+6150532 Msa0907520:CDS
TTAAACTGTATATCCAAACA+AGG 0.686505 6_2:-6153234 None:intergenic
TTGGGACTGAAAGTGGAGCA+GGG 0.703184 6_2:-6148210 None:intergenic
ACCTTTGTGAAACCTCCAAG+AGG 0.706301 6_2:-6150809 None:intergenic
GTGTGTGGATGAGAAAAGTG+TGG 0.725231 6_2:-6148313 None:intergenic
AGAGTAAGAGAAGAACGTGG+GGG 0.738834 6_2:-6148476 None:intergenic
TCTTTGATAGAACCAGATGG+GGG 0.759790 6_2:+6148744 Msa0907520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTTGATTCTTAAA+AGG - chr6_2:6148161-6148180 None:intergenic 10.0%
!!! TTTAGATTAATTTTATGAAT+TGG + chr6_2:6149172-6149191 Msa0907520:intron 10.0%
!! AAAAAAATCATATAATAACC+CGG - chr6_2:6149522-6149541 None:intergenic 15.0%
!!! ATAGTCTGTTTTTTTTTTTT+AGG + chr6_2:6152301-6152320 Msa0907520:intron 15.0%
!!! TAGTCTGTTTTTTTTTTTTA+GGG + chr6_2:6152302-6152321 Msa0907520:intron 15.0%
!!! ATCGTTGTTTTTTTTTTTTT+TGG + chr6_2:6152867-6152886 Msa0907520:intron 15.0%
!! TTAAAAGATGCAATTTGTAT+TGG - chr6_2:6148278-6148297 None:intergenic 20.0%
!! AGAAACTAATTGTAACTTAA+TGG - chr6_2:6148544-6148563 None:intergenic 20.0%
!!! TTTTGATTAATTTGTTTGCA+TGG - chr6_2:6148587-6148606 None:intergenic 20.0%
!!! AAAAACAAAAACAACACTTT+TGG + chr6_2:6148603-6148622 Msa0907520:CDS 20.0%
!!! TACTTTTTAGTAACAGTTAA+TGG - chr6_2:6148672-6148691 None:intergenic 20.0%
!!! TAACAAAAGTTGATTTTGAA+TGG + chr6_2:6148847-6148866 Msa0907520:CDS 20.0%
!!! AACAAAAGTTGATTTTGAAT+GGG + chr6_2:6148848-6148867 Msa0907520:CDS 20.0%
!! AATGGAAAAATTAATCAACT+AGG - chr6_2:6149203-6149222 None:intergenic 20.0%
!!! TTTTTCCATTGTTATTATCA+TGG + chr6_2:6149213-6149232 Msa0907520:intron 20.0%
!! TTAAACCATGATAATAACAA+TGG - chr6_2:6149221-6149240 None:intergenic 20.0%
!!! ACATTTTCTCAATCTATTAT+GGG - chr6_2:6149280-6149299 None:intergenic 20.0%
!!! TACATTTTCTCAATCTATTA+TGG - chr6_2:6149281-6149300 None:intergenic 20.0%
!! AAAAAATCATATAATAACCC+GGG - chr6_2:6149521-6149540 None:intergenic 20.0%
!! AATTCTTTACATAGCAAATT+GGG - chr6_2:6149724-6149743 None:intergenic 20.0%
!! AAATTCTTTACATAGCAAAT+TGG - chr6_2:6149725-6149744 None:intergenic 20.0%
!! ATATAAAGATTGAATATCGT+AGG - chr6_2:6150115-6150134 None:intergenic 20.0%
!! AAATTGAACGTGTTAAAAAA+CGG - chr6_2:6150347-6150366 None:intergenic 20.0%
!! AAATGAATAGATAGATGAAA+AGG - chr6_2:6151177-6151196 None:intergenic 20.0%
!! AAACTTTGTACAAAACAAAT+GGG - chr6_2:6151893-6151912 None:intergenic 20.0%
!!! CAATTTATCAGCAAAATTTT+AGG - chr6_2:6152050-6152069 None:intergenic 20.0%
!!! AAAGATTTTCTCTTTATATC+TGG + chr6_2:6152173-6152192 Msa0907520:CDS 20.0%
!! TTCCAACATACTAATATATT+TGG - chr6_2:6152450-6152469 None:intergenic 20.0%
!! GAACAATATTTAAAAGATAC+TGG + chr6_2:6152557-6152576 Msa0907520:intron 20.0%
!!! AGTGTCGAATTTAAAAAAAT+TGG + chr6_2:6152726-6152745 Msa0907520:intron 20.0%
!!! AAAAAATTGGTTTGTTACTT+AGG + chr6_2:6152739-6152758 Msa0907520:intron 20.0%
!! ATAATGAAATTCGATCTTAA+GGG - chr6_2:6152824-6152843 None:intergenic 20.0%
!! TATAATGAAATTCGATCTTA+AGG - chr6_2:6152825-6152844 None:intergenic 20.0%
!! ATTGTTAAGAGTAAAACTTA+GGG + chr6_2:6153094-6153113 Msa0907520:three_prime_UTR 20.0%
!!! TTTATCTTTTGTTATGGAAT+TGG - chr6_2:6153311-6153330 None:intergenic 20.0%
!! AATATAAGAATAGTTTGACT+TGG - chr6_2:6153335-6153354 None:intergenic 20.0%
! GATGCATCAAAATATGAATT+GGG - chr6_2:6148231-6148250 None:intergenic 25.0%
! AGATGCATCAAAATATGAAT+TGG - chr6_2:6148232-6148251 None:intergenic 25.0%
!!! CATATTTTGATGCATCTTTT+TGG + chr6_2:6148235-6148254 Msa0907520:five_prime_UTR 25.0%
!!! ATTATGTTTTTTTGAGTGTG+TGG - chr6_2:6148331-6148350 None:intergenic 25.0%
! TTAATGGTTAGAGACATTAT+GGG - chr6_2:6148528-6148547 None:intergenic 25.0%
!! TTAGATTCTCTTTCATTTTC+AGG - chr6_2:6148792-6148811 None:intergenic 25.0%
! TGAAAATGAAAGAGAATCTA+AGG + chr6_2:6148791-6148810 Msa0907520:CDS 25.0%
!!! ACTTTTGTTAGTTTCACATT+AGG - chr6_2:6148837-6148856 None:intergenic 25.0%
!!! GTTTGCATTTTAATTCACTT+AGG + chr6_2:6148940-6148959 Msa0907520:CDS 25.0%
! TCATCAATAGACAAAACAAT+AGG - chr6_2:6148999-6149018 None:intergenic 25.0%
! ATATTGTTGGTATTCTTAGA+AGG + chr6_2:6149078-6149097 Msa0907520:CDS 25.0%
!! GCATTAATTTTGTGGTTAAT+TGG + chr6_2:6149120-6149139 Msa0907520:intron 25.0%
!! TATCATGGTTTAACATTTTG+TGG + chr6_2:6149228-6149247 Msa0907520:intron 25.0%
! ACTGTCTATTTCATTATGTT+GGG + chr6_2:6149625-6149644 Msa0907520:intron 25.0%
!!! AGTTAGAAGATAATGGAATA+AGG + chr6_2:6149662-6149681 Msa0907520:intron 25.0%
!!! GTTAGAAGATAATGGAATAA+GGG + chr6_2:6149663-6149682 Msa0907520:intron 25.0%
! AAAGAAATTGAACTATGACT+CGG - chr6_2:6150232-6150251 None:intergenic 25.0%
! TTTCTTTAAACTACTCAAAC+TGG + chr6_2:6150245-6150264 Msa0907520:intron 25.0%
! TTCTTTAAACTACTCAAACT+GGG + chr6_2:6150246-6150265 Msa0907520:intron 25.0%
! AAACCTATCAAATACAATGA+TGG + chr6_2:6150605-6150624 Msa0907520:CDS 25.0%
! TTGAACTAAATAAAGAAACG+CGG - chr6_2:6150978-6150997 None:intergenic 25.0%
!!! TTTTTAGCATCTACTGTTAT+AGG - chr6_2:6151121-6151140 None:intergenic 25.0%
! TGCTAAAAAAAATATGTCCT+TGG + chr6_2:6151132-6151151 Msa0907520:intron 25.0%
! TTAAACTTCTTCTTTAAACC+AGG - chr6_2:6151274-6151293 None:intergenic 25.0%
!!! AGGTTAATTTTTCAAAGCAT+TGG + chr6_2:6151326-6151345 Msa0907520:intron 25.0%
!! AAATTCGTTTTCTTCTTCAT+AGG + chr6_2:6151366-6151385 Msa0907520:intron 25.0%
! TGATGGAAATATAGAAACTA+TGG - chr6_2:6151425-6151444 None:intergenic 25.0%
!!! TTGCTTTTACACATGAATTT+AGG + chr6_2:6151659-6151678 Msa0907520:intron 25.0%
! AAGAACATATCTCATATTGA+AGG - chr6_2:6151690-6151709 None:intergenic 25.0%
! TTGAATTGGATCTGTTTATT+CGG - chr6_2:6151738-6151757 None:intergenic 25.0%
! TGCTATTATAATCTTTGGAT+CGG + chr6_2:6151803-6151822 Msa0907520:intron 25.0%
!!! TTCAGATTTTATCGATTTTG+AGG - chr6_2:6151840-6151859 None:intergenic 25.0%
! GAAACTTTGTACAAAACAAA+TGG - chr6_2:6151894-6151913 None:intergenic 25.0%
! CTAAGTATATTTGAGTGATA+AGG - chr6_2:6151930-6151949 None:intergenic 25.0%
! TAAAGAGAAAATCTTTAGCA+CGG - chr6_2:6152169-6152188 None:intergenic 25.0%
!! CATGACAAAGTTTAGATTTT+TGG - chr6_2:6152251-6152270 None:intergenic 25.0%
! GACCAAATATATTAGTATGT+TGG + chr6_2:6152445-6152464 Msa0907520:intron 25.0%
! TATATTAGTATGTTGGAACA+TGG + chr6_2:6152452-6152471 Msa0907520:intron 25.0%
! GATTGTTAAGAGTAAAACTT+AGG + chr6_2:6153093-6153112 Msa0907520:three_prime_UTR 25.0%
! TTTCATTTCCTAATGAGTTT+AGG + chr6_2:6153211-6153230 Msa0907520:three_prime_UTR 25.0%
! TTAAACTGTATATCCAAACA+AGG - chr6_2:6153237-6153256 None:intergenic 25.0%
!!! CTTGGTTTTATCTTTTGTTA+TGG - chr6_2:6153317-6153336 None:intergenic 25.0%
! AAGTTCTTCAAGATAACTTA+TGG - chr6_2:6153373-6153392 None:intergenic 25.0%
! AAGTTATCTTGAAGAACTTA+TGG + chr6_2:6153374-6153393 Msa0907520:three_prime_UTR 25.0%
! ACACTATCTAATAGAACTTA+CGG - chr6_2:6153442-6153461 None:intergenic 25.0%
! AAGATGCAATTTGTATTGGT+GGG - chr6_2:6148274-6148293 None:intergenic 30.0%
AAAGATGCAATTTGTATTGG+TGG - chr6_2:6148275-6148294 None:intergenic 30.0%
! TTATGGGAAATTGATGGTTA+TGG - chr6_2:6148512-6148531 None:intergenic 30.0%
CTTAATGGTTAGAGACATTA+TGG - chr6_2:6148529-6148548 None:intergenic 30.0%
!! AATGGATTGTTACCAAAAGT+GGG - chr6_2:6148654-6148673 None:intergenic 30.0%
!! TAATGGATTGTTACCAAAAG+TGG - chr6_2:6148655-6148674 None:intergenic 30.0%
AAAGTTAAGAGAAGAATGCA+AGG + chr6_2:6148702-6148721 Msa0907520:CDS 30.0%
!! AATTCACTTAGGTTGAATGA+TGG + chr6_2:6148951-6148970 Msa0907520:CDS 30.0%
ATTGGATCTTCTTCTAATGT+TGG + chr6_2:6149035-6149054 Msa0907520:CDS 30.0%
TTGGATCTTCTTCTAATGTT+GGG + chr6_2:6149036-6149055 Msa0907520:CDS 30.0%
! TTCTTCTGGCATTAATTTTG+TGG + chr6_2:6149112-6149131 Msa0907520:intron 30.0%
! ATCAAGGTTTTTAATGTCTC+CGG - chr6_2:6149460-6149479 None:intergenic 30.0%
!!! CACGAAATTTTTTTATAGCC+CGG + chr6_2:6149500-6149519 Msa0907520:intron 30.0%
!!! ACGAAATTTTTTTATAGCCC+GGG + chr6_2:6149501-6149520 Msa0907520:intron 30.0%
GACTGTCTATTTCATTATGT+TGG + chr6_2:6149624-6149643 Msa0907520:intron 30.0%
GTGAAAGAGTTAGAAGATAA+TGG + chr6_2:6149655-6149674 Msa0907520:intron 30.0%
TCTTCAATTCAGTGTATGTT+TGG - chr6_2:6150006-6150025 None:intergenic 30.0%
!!! CAATGTTTTAGAAATCGAAC+CGG + chr6_2:6150186-6150205 Msa0907520:intron 30.0%
ATCTTAGTTCATGGTTTAAC+TGG + chr6_2:6150312-6150331 Msa0907520:intron 30.0%
ATTTAAGTAAACTCCTGTCA+TGG + chr6_2:6150389-6150408 Msa0907520:intron 30.0%
GAAGTTAGATTAATGGTCAT+TGG - chr6_2:6150442-6150461 None:intergenic 30.0%
CTGCAAAGAAGTTAGATTAA+TGG - chr6_2:6150449-6150468 None:intergenic 30.0%
AGACCATCATTGTATTTGAT+AGG - chr6_2:6150611-6150630 None:intergenic 30.0%
AATTCTTCACGAAGTTGTTT+GGG - chr6_2:6150653-6150672 None:intergenic 30.0%
AGAGGATGAAGCAATAAAAT+CGG - chr6_2:6150794-6150813 None:intergenic 30.0%
! ATTTTATTGCTTCATCCTCT+TGG + chr6_2:6150794-6150813 Msa0907520:CDS 30.0%
!!! TTCCATCGTTTTTTCTCATA+TGG + chr6_2:6150880-6150899 Msa0907520:intron 30.0%
AAAAAATATGTCCTTGGAAG+TGG + chr6_2:6151138-6151157 Msa0907520:intron 30.0%
CAATTCAAACTGCACTTAAA+CGG + chr6_2:6151750-6151769 Msa0907520:intron 30.0%
AACGTCAATAATAAGAGACA+TGG - chr6_2:6151962-6151981 None:intergenic 30.0%
ACTTTGTGTACTAAAGAACA+AGG - chr6_2:6152001-6152020 None:intergenic 30.0%
!! TTCTGAAACACATTAGTGAA+CGG - chr6_2:6152221-6152240 None:intergenic 30.0%
TAGTTTACAATGACTGATCT+TGG + chr6_2:6152347-6152366 Msa0907520:intron 30.0%
TTAAATTCGACACTGTTAAG+AGG - chr6_2:6152720-6152739 None:intergenic 30.0%
!!! GTGATTTGTTTTTTCAGATG+AGG + chr6_2:6152889-6152908 Msa0907520:intron 30.0%
CAACATCATGATCAAGAATT+CGG + chr6_2:6153143-6153162 Msa0907520:three_prime_UTR 30.0%
AGAATATTGGACTGAAAAGG+AGG - chr6_2:6148188-6148207 None:intergenic 35.0%
GTGAGAATATTGGACTGAAA+AGG - chr6_2:6148191-6148210 None:intergenic 35.0%
ATATGAATTGGGACTGAAAG+TGG - chr6_2:6148220-6148239 None:intergenic 35.0%
!! CATCTTTTTGGCACCAATTA+TGG + chr6_2:6148247-6148266 Msa0907520:five_prime_UTR 35.0%
ATAACAACCACCTATGACTA+TGG - chr6_2:6148395-6148414 None:intergenic 35.0%
! GAAATTGATGGTTATGGTGT+TGG - chr6_2:6148506-6148525 None:intergenic 35.0%
GAGACATTATGGGAAATTGA+TGG - chr6_2:6148518-6148537 None:intergenic 35.0%
! TTTCTTCCAAAACCCACTTT+TGG + chr6_2:6148639-6148658 Msa0907520:CDS 35.0%
!! TTGTTACCAAAAGTGGGTTT+TGG - chr6_2:6148648-6148667 None:intergenic 35.0%
GGGTGTATTAGTAGATCTTA+TGG + chr6_2:6148764-6148783 Msa0907520:CDS 35.0%
GATGAGACTAAAGAGAGAAT+TGG + chr6_2:6149017-6149036 Msa0907520:CDS 35.0%
!! TCTTCTAATGTTGGGTTGAT+TGG + chr6_2:6149044-6149063 Msa0907520:CDS 35.0%
AGGTTAGTATAGTCTTCTTC+TGG + chr6_2:6149098-6149117 Msa0907520:intron 35.0%
ATGACTTCAACCTGAAATGT+CGG + chr6_2:6149359-6149378 Msa0907520:intron 35.0%
GCTATATAGGTCACGATATT+TGG + chr6_2:6149383-6149402 Msa0907520:intron 35.0%
! TCAAGGTTTTTAATGTCTCC+GGG - chr6_2:6149459-6149478 None:intergenic 35.0%
CATTAAAAACCTTGATGTCG+AGG + chr6_2:6149464-6149483 Msa0907520:intron 35.0%
ATAAGTCCAAGAACCTCAAT+TGG + chr6_2:6149835-6149854 Msa0907520:intron 35.0%
! CTTTTATCACCTTCCAATTG+AGG - chr6_2:6149851-6149870 None:intergenic 35.0%
CTCAATTGGAAGGTGATAAA+AGG + chr6_2:6149849-6149868 Msa0907520:intron 35.0%
CGGTAAGTTTGATGAAATCA+TGG + chr6_2:6149893-6149912 Msa0907520:intron 35.0%
! TGTAGCTTTTGCCAAAATCA+GGG + chr6_2:6149945-6149964 Msa0907520:intron 35.0%
! CCATGATTTTGCCTAACTTA+CGG + chr6_2:6149975-6149994 Msa0907520:intron 35.0%
GTTTGGATTAACCGTAAGTT+AGG - chr6_2:6149989-6150008 None:intergenic 35.0%
AGCGTTTCGATGAACTATAA+TGG + chr6_2:6150033-6150052 Msa0907520:intron 35.0%
TTATTTGGGAGGTTCAACTA+CGG - chr6_2:6150278-6150297 None:intergenic 35.0%
TGAACGTGTTAAAAAACGGA+CGG - chr6_2:6150343-6150362 None:intergenic 35.0%
AAGAAAGAATAGCTAGAACC+TGG + chr6_2:6150495-6150514 Msa0907520:CDS 35.0%
AGAAAGAATAGCTAGAACCT+GGG + chr6_2:6150496-6150515 Msa0907520:CDS 35.0%
! ATGATGGTCTTGATAACTAC+AGG + chr6_2:6150621-6150640 Msa0907520:CDS 35.0%
GAATTCTTCACGAAGTTGTT+TGG - chr6_2:6150654-6150673 None:intergenic 35.0%
AACTTCGTGAAGAATTCGAT+AGG + chr6_2:6150657-6150676 Msa0907520:CDS 35.0%
TTAAGAAATCCGGTCCATAA+TGG + chr6_2:6150710-6150729 Msa0907520:CDS 35.0%
TTAACAAGGCATGACCATTA+TGG - chr6_2:6150727-6150746 None:intergenic 35.0%
! ACGAGTATCGTTCATTAACA+AGG - chr6_2:6150741-6150760 None:intergenic 35.0%
CACCATATGAGAAAAAACGA+TGG - chr6_2:6150885-6150904 None:intergenic 35.0%
CTATTTGAGAAGTTCAACTG+TGG + chr6_2:6151242-6151261 Msa0907520:intron 35.0%
AGCAAACAAGCAAGATCTAT+AGG - chr6_2:6151303-6151322 None:intergenic 35.0%
! AGCTTAACATTTTGCCTTTC+AGG + chr6_2:6151626-6151645 Msa0907520:CDS 35.0%
! GCTTAACATTTTGCCTTTCA+GGG + chr6_2:6151627-6151646 Msa0907520:CDS 35.0%
CGTTTAAGTGCAGTTTGAAT+TGG - chr6_2:6151752-6151771 None:intergenic 35.0%
GATTATAATAGCACGCAGTT+CGG - chr6_2:6151796-6151815 None:intergenic 35.0%
! CTGCGTGCTATTATAATCTT+TGG + chr6_2:6151798-6151817 Msa0907520:intron 35.0%
GGCAGTGTTATGAAGATTAA+GGG - chr6_2:6151872-6151891 None:intergenic 35.0%
TGTTTGCCATTGTACATTAC+AGG + chr6_2:6152094-6152113 Msa0907520:intron 35.0%
TGACACTAAGGTAAACAAGA+TGG + chr6_2:6152127-6152146 Msa0907520:CDS 35.0%
! TCTCTTTATATCTGGAACCA+AGG + chr6_2:6152181-6152200 Msa0907520:CDS 35.0%
CGGTTGAGAATAAAATACCT+TGG - chr6_2:6152201-6152220 None:intergenic 35.0%
!! AGGTGTCTAACATGTTTTGA+GGG - chr6_2:6152700-6152719 None:intergenic 35.0%
ATGTTCAAGACATGTGTAAC+AGG - chr6_2:6152768-6152787 None:intergenic 35.0%
! ATGAGGTCTTATGCAAAAAG+TGG + chr6_2:6152906-6152925 Msa0907520:CDS 35.0%
TATGTCTAAGCAGATAACAC+AGG - chr6_2:6153026-6153045 None:intergenic 35.0%
GGAAGACCATGCATAAAAAT+TGG - chr6_2:6153124-6153143 None:intergenic 35.0%
CGAATTCTTGATCATGATGT+TGG - chr6_2:6153145-6153164 None:intergenic 35.0%
AAACAAGGCCTAAACTCATT+AGG - chr6_2:6153222-6153241 None:intergenic 35.0%
!! TAATGAGTTTAGGCCTTGTT+TGG + chr6_2:6153221-6153240 Msa0907520:three_prime_UTR 35.0%
! TGTATTGGTGGGACCATAAT+TGG - chr6_2:6148263-6148282 None:intergenic 40.0%
! TGGATTGGATTCACAAGAAG+TGG - chr6_2:6148363-6148382 None:intergenic 40.0%
TATGACTATGGCGAACATGT+TGG - chr6_2:6148383-6148402 None:intergenic 40.0%
AACATGTTCGCCATAGTCAT+AGG + chr6_2:6148382-6148401 Msa0907520:five_prime_UTR 40.0%
AGAGAGTAAGAGAAGAACGT+GGG - chr6_2:6148481-6148500 None:intergenic 40.0%
AGCTCTTTGATAGAACCAGA+TGG + chr6_2:6148741-6148760 Msa0907520:CDS 40.0%
GCTCTTTGATAGAACCAGAT+GGG + chr6_2:6148742-6148761 Msa0907520:CDS 40.0%
CTCTTTGATAGAACCAGATG+GGG + chr6_2:6148743-6148762 Msa0907520:CDS 40.0%
TCTTTGATAGAACCAGATGG+GGG + chr6_2:6148744-6148763 Msa0907520:CDS 40.0%
TTTGAATGGGTGCATGTGAT+TGG + chr6_2:6148861-6148880 Msa0907520:CDS 40.0%
TCCATTGAAGGGTTTCATGA+GGG + chr6_2:6148899-6148918 Msa0907520:CDS 40.0%
ATACCAACAATATCCCCATC+AGG - chr6_2:6149071-6149090 None:intergenic 40.0%
!! CTATATAGCACCGACATTTC+AGG - chr6_2:6149372-6149391 None:intergenic 40.0%
!! CTGAAATGTCGGTGCTATAT+AGG + chr6_2:6149370-6149389 Msa0907520:intron 40.0%
TTTGACATCAATTGCAGTCC+CGG + chr6_2:6149438-6149457 Msa0907520:intron 40.0%
TGAGTGCATGTTTAGATTGG+CGG + chr6_2:6149873-6149892 Msa0907520:intron 40.0%
! CTGTAGCTTTTGCCAAAATC+AGG + chr6_2:6149944-6149963 Msa0907520:intron 40.0%
CCGTAAGTTAGGCAAAATCA+TGG - chr6_2:6149978-6149997 None:intergenic 40.0%
! GAAATTGAACTATGACTCGG+AGG - chr6_2:6150229-6150248 None:intergenic 40.0%
AACCTCCCAAATAACTGAAC+CGG + chr6_2:6150284-6150303 Msa0907520:intron 40.0%
TGTCTCCGGTTCAGTTATTT+GGG - chr6_2:6150292-6150311 None:intergenic 40.0%
TTGTCTCCGGTTCAGTTATT+TGG - chr6_2:6150293-6150312 None:intergenic 40.0%
CCATGAACTAAGATTGTCTC+CGG - chr6_2:6150306-6150325 None:intergenic 40.0%
GAAAGAATAGCTAGAACCTG+GGG + chr6_2:6150497-6150516 Msa0907520:CDS 40.0%
AATAAGCCAATTTCCAGCTG+GGG - chr6_2:6150564-6150583 None:intergenic 40.0%
CAATAAGCCAATTTCCAGCT+GGG - chr6_2:6150565-6150584 None:intergenic 40.0%
TTGGCTTATTGGAGGAGATT+TGG + chr6_2:6150574-6150593 Msa0907520:CDS 40.0%
CGCCTTTCAGTTAAGAAATC+CGG + chr6_2:6150700-6150719 Msa0907520:CDS 40.0%
GACCGGATTTCTTAACTGAA+AGG - chr6_2:6150705-6150724 None:intergenic 40.0%
TCGTCAACGTCTATTAGACA+TGG + chr6_2:6150757-6150776 Msa0907520:CDS 40.0%
CGTCAACGTCTATTAGACAT+GGG + chr6_2:6150758-6150777 Msa0907520:CDS 40.0%
TTATTGCTTCATCCTCTTGG+AGG + chr6_2:6150797-6150816 Msa0907520:CDS 40.0%
ACATCGATGCTATAGAGTGA+AGG + chr6_2:6150929-6150948 Msa0907520:intron 40.0%
TTACAGTTCATCCACTTCCA+AGG - chr6_2:6151152-6151171 None:intergenic 40.0%
CAAGCAAGATCTATAGGTCA+TGG - chr6_2:6151297-6151316 None:intergenic 40.0%
TCTTCATAGGTCCTAGAAGA+TGG + chr6_2:6151379-6151398 Msa0907520:intron 40.0%
GATCAAGAACACCATCTTCT+AGG - chr6_2:6151393-6151412 None:intergenic 40.0%
ATAGAAACTATGGTCGTCTC+AGG - chr6_2:6151415-6151434 None:intergenic 40.0%
GGTGCCAACTTCTATATTGT+TGG + chr6_2:6151505-6151524 Msa0907520:CDS 40.0%
GCGACCAACAATATAGAAGT+TGG - chr6_2:6151512-6151531 None:intergenic 40.0%
! GTCATACAAGTCCCTTTTCT+CGG - chr6_2:6151560-6151579 None:intergenic 40.0%
TGACCCTGATCATGGAAAAA+AGG + chr6_2:6151576-6151595 Msa0907520:CDS 40.0%
!!! GCACCTTTTTTCCATGATCA+GGG - chr6_2:6151582-6151601 None:intergenic 40.0%
!!! AGCACCTTTTTTCCATGATC+AGG - chr6_2:6151583-6151602 None:intergenic 40.0%
!! TGGAAAAAAGGTGCTTAGCA+TGG + chr6_2:6151588-6151607 Msa0907520:CDS 40.0%
GCAATACTACTTACCCTGAA+AGG - chr6_2:6151643-6151662 None:intergenic 40.0%
GGGCAGTGTTATGAAGATTA+AGG - chr6_2:6151873-6151892 None:intergenic 40.0%
CTGCAACCTGTAATGTACAA+TGG - chr6_2:6152103-6152122 None:intergenic 40.0%
GAAAATCTTTAGCACGGCTA+GGG - chr6_2:6152163-6152182 None:intergenic 40.0%
AGAAAATCTTTAGCACGGCT+AGG - chr6_2:6152164-6152183 None:intergenic 40.0%
!! GAGGTGTCTAACATGTTTTG+AGG - chr6_2:6152701-6152720 None:intergenic 40.0%
CAAGAACTTTCCATCCACTT+GGG - chr6_2:6152959-6152978 None:intergenic 40.0%
ACAAGAACTTTCCATCCACT+TGG - chr6_2:6152960-6152979 None:intergenic 40.0%
!! GGAGTGCCAATTTTTATGCA+TGG + chr6_2:6153115-6153134 Msa0907520:three_prime_UTR 40.0%
GTGTGTGGATGAGAAAAGTG+TGG - chr6_2:6148316-6148335 None:intergenic 45.0%
CTATGGCGAACATGTTGGAT+TGG - chr6_2:6148378-6148397 None:intergenic 45.0%
ATGTTCGCCATAGTCATAGG+TGG + chr6_2:6148385-6148404 Msa0907520:five_prime_UTR 45.0%
AGAGTAAGAGAAGAACGTGG+GGG - chr6_2:6148479-6148498 None:intergenic 45.0%
GAGAGTAAGAGAAGAACGTG+GGG - chr6_2:6148480-6148499 None:intergenic 45.0%
GAGAGAGTAAGAGAAGAACG+TGG - chr6_2:6148482-6148501 None:intergenic 45.0%
TCTACTAATACACCCCCATC+TGG - chr6_2:6148759-6148778 None:intergenic 45.0%
TGCATGTGATTGGTGAAGGT+TGG + chr6_2:6148871-6148890 Msa0907520:CDS 45.0%
GCATGTGATTGGTGAAGGTT+GGG + chr6_2:6148872-6148891 Msa0907520:CDS 45.0%
GTCCATTGAAGGGTTTCATG+AGG + chr6_2:6148898-6148917 Msa0907520:CDS 45.0%
TCCCTCATGAAACCCTTCAA+TGG - chr6_2:6148903-6148922 None:intergenic 45.0%
!! TTGGGTTGATTGGACCTGAT+GGG + chr6_2:6149054-6149073 Msa0907520:CDS 45.0%
CAATTTGAGCCTCGACATCA+AGG - chr6_2:6149476-6149495 None:intergenic 45.0%
GTCCAAGAACCTCAATTGGA+AGG + chr6_2:6149839-6149858 Msa0907520:intron 45.0%
CACCTTCCAATTGAGGTTCT+TGG - chr6_2:6149844-6149863 None:intergenic 45.0%
GGCTGAGTGCATGTTTAGAT+TGG + chr6_2:6149870-6149889 Msa0907520:intron 45.0%
! AGCTTTTGCCAAAATCAGGG+CGG + chr6_2:6149948-6149967 Msa0907520:intron 45.0%
! GGTCTTGTCAGTTTGATGTC+CGG - chr6_2:6150208-6150227 None:intergenic 45.0%
CCGGAGACAATCTTAGTTCA+TGG + chr6_2:6150303-6150322 Msa0907520:intron 45.0%
AAACTCCTGTCATGGTGTCT+CGG + chr6_2:6150397-6150416 Msa0907520:intron 45.0%
TCATTACCCCAGCTGGAAAT+TGG + chr6_2:6150555-6150574 Msa0907520:CDS 45.0%
CCAATAAGCCAATTTCCAGC+TGG - chr6_2:6150566-6150585 None:intergenic 45.0%
! CCAGCTGGAAATTGGCTTAT+TGG + chr6_2:6150563-6150582 Msa0907520:CDS 45.0%
! GCTGGAAATTGGCTTATTGG+AGG + chr6_2:6150566-6150585 Msa0907520:CDS 45.0%
AAGGCATGACCATTATGGAC+CGG - chr6_2:6150722-6150741 None:intergenic 45.0%
TCCTCTTGGAGGTTTCACAA+AGG + chr6_2:6150808-6150827 Msa0907520:intron 45.0%
ACCTTTGTGAAACCTCCAAG+AGG - chr6_2:6150812-6150831 None:intergenic 45.0%
ACGATGTTCCGTTAGATGTC+AGG + chr6_2:6150834-6150853 Msa0907520:intron 45.0%
TGTTCCGTTAGATGTCAGGA+TGG + chr6_2:6150838-6150857 Msa0907520:intron 45.0%
TGCTCCATCCTGACATCTAA+CGG - chr6_2:6150845-6150864 None:intergenic 45.0%
GCTATGCAACAGTTCTACAG+CGG - chr6_2:6151027-6151046 None:intergenic 45.0%
!! GATCTTGCTTGTTTGCTGTG+AGG + chr6_2:6151306-6151325 Msa0907520:intron 45.0%
CCTGCATAATGCATAGGTGA+TGG - chr6_2:6151442-6151461 None:intergenic 45.0%
CCATCACCTATGCATTATGC+AGG + chr6_2:6151439-6151458 Msa0907520:intron 45.0%
GTTGGACCTGCATAATGCAT+AGG - chr6_2:6151448-6151467 None:intergenic 45.0%
CAGGTCCAACTGAAGTTCAA+TGG + chr6_2:6151458-6151477 Msa0907520:intron 45.0%
GCATGCCATTGAACTTCAGT+TGG - chr6_2:6151466-6151485 None:intergenic 45.0%
TGAAGTTCAATGGCATGCGA+AGG + chr6_2:6151468-6151487 Msa0907520:CDS 45.0%
! ACAAGTCCCTTTTCTCGGTT+GGG - chr6_2:6151555-6151574 None:intergenic 45.0%
! TACAAGTCCCTTTTCTCGGT+TGG - chr6_2:6151556-6151575 None:intergenic 45.0%
GACTTGTATGACCCTGATCA+TGG + chr6_2:6151568-6151587 Msa0907520:CDS 45.0%
ATGTTAAGCTTCTCGAGACC+AGG - chr6_2:6151616-6151635 None:intergenic 45.0%
TAATAGCACGCAGTTCGGAT+TGG - chr6_2:6151791-6151810 None:intergenic 45.0%
GGTTGCAGCTTATGACACTA+AGG + chr6_2:6152115-6152134 Msa0907520:intron 45.0%
CTGATCTTGGTTCCTACATC+TGG + chr6_2:6152360-6152379 Msa0907520:intron 45.0%
GCTGTGATAAAGCCAGATGT+AGG - chr6_2:6152375-6152394 None:intergenic 45.0%
! GCAGAAACAACACTTTGGAG+AGG - chr6_2:6152637-6152656 None:intergenic 45.0%
GACACGCAGAAACAACACTT+TGG - chr6_2:6152642-6152661 None:intergenic 45.0%
TCTGCGTGTCAGACACATTT+CGG + chr6_2:6152652-6152671 Msa0907520:intron 45.0%
TTGAACATGCACCAAGAGAC+TGG + chr6_2:6152780-6152799 Msa0907520:intron 45.0%
TGAACATGCACCAAGAGACT+GGG + chr6_2:6152781-6152800 Msa0907520:intron 45.0%
CTTGGGCACATAAATCCATC+TGG - chr6_2:6152942-6152961 None:intergenic 45.0%
! GATGGATTTATGTGCCCAAG+TGG + chr6_2:6152942-6152961 Msa0907520:CDS 45.0%
GATTTATGTGCCCAAGTGGA+TGG + chr6_2:6152946-6152965 Msa0907520:CDS 45.0%
!!! TATTATATGATTTTTTTTTA+CGG + chr6_2:6149525-6149544 Msa0907520:intron 5.0%
GTGGAGCAGGGTGAGAATAT+TGG - chr6_2:6148201-6148220 None:intergenic 50.0%
TTGGGACTGAAAGTGGAGCA+GGG - chr6_2:6148213-6148232 None:intergenic 50.0%
ATTGGGACTGAAAGTGGAGC+AGG - chr6_2:6148214-6148233 None:intergenic 50.0%
TGGGTGCATGTGATTGGTGA+AGG + chr6_2:6148867-6148886 Msa0907520:CDS 50.0%
!! AGGTTGGGCTAGTCCATTGA+AGG + chr6_2:6148887-6148906 Msa0907520:CDS 50.0%
!! GGTTGGGCTAGTCCATTGAA+GGG + chr6_2:6148888-6148907 Msa0907520:CDS 50.0%
!! GTTGGGTTGATTGGACCTGA+TGG + chr6_2:6149053-6149072 Msa0907520:CDS 50.0%
!! TGGGTTGATTGGACCTGATG+GGG + chr6_2:6149055-6149074 Msa0907520:CDS 50.0%
GGACCTGATGGGGATATTGT+TGG + chr6_2:6149065-6149084 Msa0907520:CDS 50.0%
! ATGGTGTTCCGCCCTGATTT+TGG - chr6_2:6149959-6149978 None:intergenic 50.0%
CTCCGGTTCAGTTATTTGGG+AGG - chr6_2:6150289-6150308 None:intergenic 50.0%
AAACTCCGAGACACCATGAC+AGG - chr6_2:6150405-6150424 None:intergenic 50.0%
GTAATGACCTCCTCGACGTA+AGG - chr6_2:6150542-6150561 None:intergenic 50.0%
CAGGATGGAGCAACATAGCA+AGG + chr6_2:6150853-6150872 Msa0907520:intron 50.0%
GTTCAACTGTGGTTTCGTCC+TGG + chr6_2:6151253-6151272 Msa0907520:intron 50.0%
TTCAATGGCATGCGAAGGCA+CGG + chr6_2:6151473-6151492 Msa0907520:CDS 50.0%
! AGGGTGTGTCTGAGAAGTGT+CGG - chr6_2:6152681-6152700 None:intergenic 50.0%
AGTGGAGAGAATCCACCAGA+TGG + chr6_2:6152924-6152943 Msa0907520:CDS 50.0%
GGGCACATAAATCCATCTGG+TGG - chr6_2:6152939-6152958 None:intergenic 50.0%
GACGTAAGGCAATCCTGGAG+CGG - chr6_2:6150528-6150547 None:intergenic 55.0%
TCCAGGATTGCCTTACGTCG+AGG + chr6_2:6150529-6150548 Msa0907520:CDS 55.0%
TCCTCGACGTAAGGCAATCC+TGG - chr6_2:6150533-6150552 None:intergenic 55.0%
AGGATTGCCTTACGTCGAGG+AGG + chr6_2:6150532-6150551 Msa0907520:CDS 55.0%
!! GCGCTATTTTCCGCGATCTG+CGG + chr6_2:6151063-6151082 Msa0907520:intron 55.0%
! GCGAAGGCACGGATAAATGC+AGG + chr6_2:6151484-6151503 Msa0907520:CDS 55.0%
ATTGTTGGTCGCGATCCTGC+TGG + chr6_2:6151520-6151539 Msa0907520:CDS 55.0%
TGGGTCACCCAACCGAGAAA+AGG + chr6_2:6151545-6151564 Msa0907520:CDS 55.0%
GGGTCACCCAACCGAGAAAA+GGG + chr6_2:6151546-6151565 Msa0907520:CDS 55.0%
! AAGGTGCTTAGCATGGCTCC+TGG + chr6_2:6151595-6151614 Msa0907520:CDS 55.0%
!! GAGAGGTGTCTGTGCTTCTG+AGG - chr6_2:6152620-6152639 None:intergenic 55.0%
GAGGAGGTCATTACCCCAGC+TGG + chr6_2:6150548-6150567 Msa0907520:CDS 60.0%
CTGCTGTCAACCGCAGATCG+CGG - chr6_2:6151076-6151095 None:intergenic 60.0%
CGATCTGCGGTTGACAGCAG+TGG + chr6_2:6151076-6151095 Msa0907520:intron 60.0%
TGGTCGCGATCCTGCTGGTA+TGG + chr6_2:6151525-6151544 Msa0907520:CDS 60.0%
GGTCGCGATCCTGCTGGTAT+GGG + chr6_2:6151526-6151545 Msa0907520:CDS 60.0%
GTTGGGTGACCCATACCAGC+AGG - chr6_2:6151538-6151557 None:intergenic 60.0%
TAAGGGCCCTGACCAGGTGT+CGG - chr6_2:6152807-6152826 None:intergenic 60.0%
CGATCTTAAGGGCCCTGACC+AGG - chr6_2:6152813-6152832 None:intergenic 60.0%
ACCTGGGGAACAACCGCTCC+AGG + chr6_2:6150512-6150531 Msa0907520:CDS 65.0%
TCCTGGAGCGGTTGTTCCCC+AGG - chr6_2:6150516-6150535 None:intergenic 65.0%
!! CAGGTGTCGGCCCAGTCTCT+TGG - chr6_2:6152794-6152813 None:intergenic 65.0%
CAAGAGACTGGGCCGACACC+TGG + chr6_2:6152792-6152811 Msa0907520:intron 65.0%
ACTGGGCCGACACCTGGTCA+GGG + chr6_2:6152798-6152817 Msa0907520:intron 65.0%
GACTGGGCCGACACCTGGTC+AGG + chr6_2:6152797-6152816 Msa0907520:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6148088 6153504 6148088 ID=Msa0907520;Name=Msa0907520
chr6_2 mRNA 6148088 6153504 6148088 ID=Msa0907520-mRNA-1;Parent=Msa0907520;Name=Msa0907520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=443|0.75|0.6|1|1|1|5|464|442
chr6_2 exon 6148088 6149099 6148088 ID=Msa0907520-mRNA-1:exon:1950;Parent=Msa0907520-mRNA-1
chr6_2 exon 6150469 6150818 6150469 ID=Msa0907520-mRNA-1:exon:1951;Parent=Msa0907520-mRNA-1
chr6_2 exon 6151461 6151648 6151461 ID=Msa0907520-mRNA-1:exon:1952;Parent=Msa0907520-mRNA-1
chr6_2 exon 6152116 6152202 6152116 ID=Msa0907520-mRNA-1:exon:1953;Parent=Msa0907520-mRNA-1
chr6_2 exon 6152906 6153504 6152906 ID=Msa0907520-mRNA-1:exon:1954;Parent=Msa0907520-mRNA-1
chr6_2 five_prime_UTR 6148088 6148530 6148088 ID=Msa0907520-mRNA-1:five_prime_utr;Parent=Msa0907520-mRNA-1
chr6_2 CDS 6148531 6149099 6148531 ID=Msa0907520-mRNA-1:cds;Parent=Msa0907520-mRNA-1
chr6_2 CDS 6150469 6150818 6150469 ID=Msa0907520-mRNA-1:cds;Parent=Msa0907520-mRNA-1
chr6_2 CDS 6151461 6151648 6151461 ID=Msa0907520-mRNA-1:cds;Parent=Msa0907520-mRNA-1
chr6_2 CDS 6152116 6152202 6152116 ID=Msa0907520-mRNA-1:cds;Parent=Msa0907520-mRNA-1
chr6_2 CDS 6152906 6153040 6152906 ID=Msa0907520-mRNA-1:cds;Parent=Msa0907520-mRNA-1
chr6_2 three_prime_UTR 6153041 6153504 6153041 ID=Msa0907520-mRNA-1:three_prime_utr;Parent=Msa0907520-mRNA-1
Gene Sequence

>Msa0907520

ATGTCTCTAACCATTAAGTTACAATTAGTTTCTCATCTTAACATCAACAAAAACCATGCAAACAAATTAATCAAAAACAAAAACAACACTTTTGGTAACACTTTAAAGTTTCTTCCAAAACCCACTTTTGGTAACAATCCATTAACTGTTACTAAAAAGTATAATAGTAATAAAGTTAAGAGAAGAATGCAAGGAAATATCATGATCAAAAGCTCTTTGATAGAACCAGATGGGGGTGTATTAGTAGATCTTATGGTGCCTGAAAATGAAAGAGAATCTAAGGTACTTGAAGCTAAGTCACTTCCTAATGTGAAACTAACAAAAGTTGATTTTGAATGGGTGCATGTGATTGGTGAAGGTTGGGCTAGTCCATTGAAGGGTTTCATGAGGGAAAATGAATATCTTCAAAGTTTGCATTTTAATTCACTTAGGTTGAATGATGGTTCTTTTGTTAATATGTCACTTCCTATTGTTTTGTCTATTGATGATGAGACTAAAGAGAGAATTGGATCTTCTTCTAATGTTGGGTTGATTGGACCTGATGGGGATATTGTTGGTATTCTTAGAAGCATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCTGGGGAACAACCGCTCCAGGATTGCCTTACGTCGAGGAGGTCATTACCCCAGCTGGAAATTGGCTTATTGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGATGGTCTTGATAACTACAGGCTCTCTCCCAAACAACTTCGTGAAGAATTCGATAGGCGTAAAGCTGATGCAGTTTTCGCCTTTCAGTTAAGAAATCCGGTCCATAATGGTCATGCCTTGTTAATGAACGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCGATTTTATTGCTTCATCCTCTTGGAGGTCCAACTGAAGTTCAATGGCATGCGAAGGCACGGATAAATGCAGGTGCCAACTTCTATATTGTTGGTCGCGATCCTGCTGGTATGGGTCACCCAACCGAGAAAAGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCTTAGCATGGCTCCTGGTCTCGAGAAGCTTAACATTTTGCCTTTCAGGGTTGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTCGACCCTAGCCGTGCTAAAGATTTTCTCTTTATATCTGGAACCAAGATGAGGTCTTATGCAAAAAGTGGAGAGAATCCACCAGATGGATTTATGTGCCCAAGTGGATGGAAAGTTCTTGTCAATTATTATGAAAGTTTGCAGACAGAAGAAGCATCACAACAGCCTGTGTTATCTGCTTAG

Protein sequence

>Msa0907520

MSLTIKLQLVSHLNINKNHANKLIKNKNNTFGNTLKFLPKPTFGNNPLTVTKKYNSNKVKRRMQGNIMIKSSLIEPDGGVLVDLMVPENERESKVLEAKSLPNVKLTKVDFEWVHVIGEGWASPLKGFMRENEYLQSLHFNSLRLNDGSFVNMSLPIVLSIDDETKERIGSSSNVGLIGPDGDIVGILRSIEIYKHNKEERIARTWGTTAPGLPYVEEVITPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPLGGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTKVNKMAFFDPSRAKDFLFISGTKMRSYAKSGENPPDGFMCPSGWKVLVNYYESLQTEEASQQPVLSA*