Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981900 | XP_003593210.1 | 93.668 | 379 | 19 | 2 | 1 | 379 | 1 | 374 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981900 | G7INX2 | 93.668 | 379 | 19 | 2 | 1 | 379 | 1 | 374 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006820 | Msa0981900 | 0.818028 | 2.427140e-52 | -8.615850e-47 |
| Msa0035090 | Msa0981900 | 0.817219 | 3.694300e-52 | -8.615850e-47 |
| Msa0039200 | Msa0981900 | 0.827344 | 1.647508e-54 | -8.615850e-47 |
| Msa0040190 | Msa0981900 | 0.807977 | 3.882374e-50 | -8.615850e-47 |
| Msa0050500 | Msa0981900 | 0.821083 | 4.875725e-53 | -8.615850e-47 |
| Msa0086820 | Msa0981900 | 0.830649 | 2.607815e-55 | -8.615850e-47 |
| Msa0095140 | Msa0981900 | 0.802160 | 6.399854e-49 | -8.615850e-47 |
| Msa0095270 | Msa0981900 | 0.802603 | 5.187376e-49 | -8.615850e-47 |
| Msa0100910 | Msa0981900 | 0.806416 | 8.312900e-50 | -8.615850e-47 |
| Msa0615850 | Msa0981900 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0620750 | Msa0981900 | 0.806976 | 6.330782e-50 | -8.615850e-47 |
| Msa0653710 | Msa0981900 | 0.816176 | 6.329582e-52 | -8.615850e-47 |
| Msa0662850 | Msa0981900 | 0.866155 | 3.506175e-65 | -8.615850e-47 |
| Msa0698900 | Msa0981900 | 0.813362 | 2.659472e-51 | -8.615850e-47 |
| Msa0706530 | Msa0981900 | 0.820468 | 6.750492e-53 | -8.615850e-47 |
| Msa0706710 | Msa0981900 | 0.804464 | 2.133094e-49 | -8.615850e-47 |
| Msa0729780 | Msa0981900 | 0.803399 | 3.551808e-49 | -8.615850e-47 |
| Msa0731740 | Msa0981900 | 0.824265 | 8.861940e-54 | -8.615850e-47 |
| Msa0733570 | Msa0981900 | 0.833271 | 5.870937e-56 | -8.615850e-47 |
| Msa0736930 | Msa0981900 | 0.869087 | 4.027235e-66 | -8.615850e-47 |
| Msa0739570 | Msa0981900 | 0.819419 | 1.173254e-52 | -8.615850e-47 |
| Msa0739610 | Msa0981900 | 0.805477 | 1.309994e-49 | -8.615850e-47 |
| Msa0751000 | Msa0981900 | 0.845541 | 3.808780e-59 | -8.615850e-47 |
| Msa0766880 | Msa0981900 | 0.834792 | 2.441373e-56 | -8.615850e-47 |
| Msa0771960 | Msa0981900 | 0.840415 | 8.813967e-58 | -8.615850e-47 |
| Msa0772040 | Msa0981900 | 0.842771 | 2.110018e-58 | -8.615850e-47 |
| Msa0774680 | Msa0981900 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0778060 | Msa0981900 | 0.816805 | 4.574871e-52 | -8.615850e-47 |
| Msa0782030 | Msa0981900 | 0.825853 | 3.736664e-54 | -8.615850e-47 |
| Msa0782330 | Msa0981900 | 0.822427 | 2.382324e-53 | -8.615850e-47 |
| Msa0786970 | Msa0981900 | 0.800619 | 1.324085e-48 | -8.615850e-47 |
| Msa0794040 | Msa0981900 | 0.859496 | 3.972275e-63 | -8.615850e-47 |
| Msa0796450 | Msa0981900 | 0.831418 | 1.688373e-55 | -8.615850e-47 |
| Msa0812230 | Msa0981900 | 0.800552 | 1.365886e-48 | -8.615850e-47 |
| Msa0815950 | Msa0981900 | 0.817447 | 3.282557e-52 | -8.615850e-47 |
| Msa0130120 | Msa0981900 | 0.817332 | 3.483607e-52 | -8.615850e-47 |
| Msa0133670 | Msa0981900 | 0.831622 | 1.503764e-55 | -8.615850e-47 |
| Msa0133880 | Msa0981900 | 0.838818 | 2.293536e-57 | -8.615850e-47 |
| Msa0134550 | Msa0981900 | 0.807740 | 4.359986e-50 | -8.615850e-47 |
| Msa0139740 | Msa0981900 | 0.821310 | 4.322033e-53 | -8.615850e-47 |
| Msa0175480 | Msa0981900 | 0.815825 | 7.581910e-52 | -8.615850e-47 |
| Msa0175900 | Msa0981900 | 0.816861 | 4.445214e-52 | -8.615850e-47 |
| Msa0184120 | Msa0981900 | 0.832199 | 1.083070e-55 | -8.615850e-47 |
| Msa0189880 | Msa0981900 | 0.849702 | 2.729689e-60 | -8.615850e-47 |
| Msa0207530 | Msa0981900 | 0.808692 | 2.733124e-50 | -8.615850e-47 |
| Msa0216010 | Msa0981900 | 0.846962 | 1.561524e-59 | -8.615850e-47 |
| Msa0216560 | Msa0981900 | 0.843887 | 1.062828e-58 | -8.615850e-47 |
| Msa0369750 | Msa0981900 | 0.854754 | 9.970885e-62 | -8.615850e-47 |
| Msa0377460 | Msa0981900 | 0.818456 | 1.942240e-52 | -8.615850e-47 |
| Msa0381370 | Msa0981900 | 0.808775 | 2.623564e-50 | -8.615850e-47 |
| Msa0390950 | Msa0981900 | 0.801841 | 7.444050e-49 | -8.615850e-47 |
| Msa0416990 | Msa0981900 | 0.809765 | 1.609770e-50 | -8.615850e-47 |
| Msa0422520 | Msa0981900 | 0.800785 | 1.224809e-48 | -8.615850e-47 |
| Msa0426860 | Msa0981900 | 0.809170 | 2.160049e-50 | -8.615850e-47 |
| Msa0426890 | Msa0981900 | 0.801461 | 8.907960e-49 | -8.615850e-47 |
| Msa0427050 | Msa0981900 | 0.835512 | 1.606864e-56 | -8.615850e-47 |
| Msa0429130 | Msa0981900 | 0.813299 | 2.745769e-51 | -8.615850e-47 |
| Msa0448400 | Msa0981900 | 0.819270 | 1.268132e-52 | -8.615850e-47 |
| Msa0456480 | Msa0981900 | 0.814222 | 1.719382e-51 | -8.615850e-47 |
| Msa0463540 | Msa0981900 | 0.805244 | 1.465945e-49 | -8.615850e-47 |
| Msa0463960 | Msa0981900 | 0.850665 | 1.466105e-60 | -8.615850e-47 |
| Msa0471790 | Msa0981900 | 0.805890 | 1.073097e-49 | -8.615850e-47 |
| Msa0473450 | Msa0981900 | 0.855465 | 6.196598e-62 | -8.615850e-47 |
| Msa0475360 | Msa0981900 | 0.811200 | 7.886676e-51 | -8.615850e-47 |
| Msa0981900 | Msa0982590 | 0.807544 | 4.800338e-50 | -8.615850e-47 |
| Msa0981900 | Msa0988990 | 0.803460 | 3.448777e-49 | -8.615850e-47 |
| Msa0981900 | Msa1016130 | 0.831942 | 1.254002e-55 | -8.615850e-47 |
| Msa0981900 | Msa1024580 | 0.822676 | 2.085412e-53 | -8.615850e-47 |
| Msa0981900 | Msa1030280 | 0.821963 | 3.053501e-53 | -8.615850e-47 |
| Msa0981900 | Msa1049440 | 0.852926 | 3.349867e-61 | -8.615850e-47 |
| Msa0981900 | Msa1063180 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0981900 | Msa1079610 | 0.815695 | 8.102483e-52 | -8.615850e-47 |
| Msa0981900 | Msa1086630 | 0.801228 | 9.940313e-49 | -8.615850e-47 |
| Msa0981900 | Msa1102180 | 0.845375 | 4.224228e-59 | -8.615850e-47 |
| Msa0981900 | Msa1108530 | 0.814269 | 1.678869e-51 | -8.615850e-47 |
| Msa0981900 | Msa1122480 | 0.831954 | 1.245309e-55 | -8.615850e-47 |
| Msa0981900 | Msa1123340 | 0.838833 | 2.273733e-57 | -8.615850e-47 |
| Msa0981900 | Msa1124440 | 0.814926 | 1.201445e-51 | -8.615850e-47 |
| Msa0981900 | Msa1132320 | 0.838102 | 3.509111e-57 | -8.615850e-47 |
| Msa0981900 | Msa1152280 | 0.816651 | 4.955241e-52 | -8.615850e-47 |
| Msa0981900 | Msa1157160 | 0.809370 | 1.956528e-50 | -8.615850e-47 |
| Msa0981900 | Msa1161120 | 0.809281 | 2.044579e-50 | -8.615850e-47 |
| Msa0981900 | Msa1166450 | 0.803529 | 3.338209e-49 | -8.615850e-47 |
| Msa0981900 | Msa1168130 | 0.800002 | 1.767715e-48 | -8.615850e-47 |
| Msa0981900 | Msa1175970 | 0.800096 | 1.691343e-48 | -8.615850e-47 |
| Msa0981900 | Msa1195860 | 0.817805 | 2.725581e-52 | -8.615850e-47 |
| Msa0981900 | Msa1220740 | 0.805050 | 1.609554e-49 | -8.615850e-47 |
| Msa0981900 | Msa1232640 | 0.804530 | 2.067066e-49 | -8.615850e-47 |
| Msa0981900 | Msa1235050 | 0.802767 | 4.797466e-49 | -8.615850e-47 |
| Msa0981900 | Msa1248400 | 0.839577 | 1.458362e-57 | -8.615850e-47 |
| Msa0981900 | Msa1264230 | 0.812285 | 4.578848e-51 | -8.615850e-47 |
| Msa0981900 | Msa1265250 | 0.827880 | 1.225388e-54 | -8.615850e-47 |
| Msa0981900 | Msa1284390 | 0.806827 | 6.806957e-50 | -8.615850e-47 |
| Msa0981900 | Msa1302920 | 0.820598 | 6.302552e-53 | -8.615850e-47 |
| Msa0981900 | Msa1306700 | 0.807027 | 6.175953e-50 | -8.615850e-47 |
| Msa0981900 | Msa1310260 | 0.823533 | 1.315785e-53 | -8.615850e-47 |
| Msa0981900 | Msa1316160 | 0.838605 | 2.603522e-57 | -8.615850e-47 |
| Msa0981900 | Msa1323920 | 0.834474 | 2.935119e-56 | -8.615850e-47 |
| Msa0981900 | Msa1327820 | 0.818546 | 1.852704e-52 | -8.615850e-47 |
| Msa0981900 | Msa1334650 | 0.805432 | 1.339030e-49 | -8.615850e-47 |
| Msa0981900 | Msa1346540 | 0.815556 | 8.700708e-52 | -8.615850e-47 |
| Msa0981900 | Msa1357720 | 0.811167 | 8.017240e-51 | -8.615850e-47 |
| Msa0981900 | Msa1365210 | 0.801298 | 9.618383e-49 | -8.615850e-47 |
| Msa0981900 | Msa1368180 | 0.807109 | 5.934403e-50 | -8.615850e-47 |
| Msa0981900 | Msa1371250 | 0.815903 | 7.283845e-52 | -8.615850e-47 |
| Msa0981900 | Msa1373590 | 0.985767 | 1.334960e-164 | -8.615850e-47 |
| Msa0981900 | Msa1380540 | 0.801747 | 7.782838e-49 | -8.615850e-47 |
| Msa0981900 | Msa1385940 | 0.845975 | 2.904105e-59 | -8.615850e-47 |
| Msa0981900 | Msa1387090 | 0.809638 | 1.713973e-50 | -8.615850e-47 |
| Msa0981900 | Msa1393600 | 0.806954 | 6.400509e-50 | -8.615850e-47 |
| Msa0981900 | Msa1394090 | 0.805194 | 1.501660e-49 | -8.615850e-47 |
| Msa0981900 | Msa1394280 | 0.802556 | 5.305229e-49 | -8.615850e-47 |
| Msa0981900 | Msa1404720 | 0.809167 | 2.163007e-50 | -8.615850e-47 |
| Msa0981900 | Msa1415120 | 0.828862 | 7.098467e-55 | -8.615850e-47 |
| Msa0981900 | Msa1422750 | 0.865222 | 6.903615e-65 | -8.615850e-47 |
| Msa0981900 | Msa1435470 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0981900 | Msa1438420 | 0.806688 | 7.283208e-50 | -8.615850e-47 |
| Msa0981900 | Msa1452200 | 0.804006 | 2.657391e-49 | -8.615850e-47 |
| Msa0256170 | Msa0981900 | 0.833880 | 4.135498e-56 | -8.615850e-47 |
| Msa0268180 | Msa0981900 | 0.803394 | 3.559089e-49 | -8.615850e-47 |
| Msa0270610 | Msa0981900 | 0.817097 | 3.935492e-52 | -8.615850e-47 |
| Msa0288320 | Msa0981900 | 0.802911 | 4.480230e-49 | -8.615850e-47 |
| Msa0295270 | Msa0981900 | 0.822656 | 2.108331e-53 | -8.615850e-47 |
| Msa0295840 | Msa0981900 | 0.839322 | 1.698052e-57 | -8.615850e-47 |
| Msa0301800 | Msa0981900 | 0.824500 | 7.806109e-54 | -8.615850e-47 |
| Msa0306130 | Msa0981900 | 0.821682 | 3.546080e-53 | -8.615850e-47 |
| Msa0310490 | Msa0981900 | 0.854615 | 1.093656e-61 | -8.615850e-47 |
| Msa0338570 | Msa0981900 | 0.808335 | 3.257613e-50 | -8.615850e-47 |
| Msa0509500 | Msa0981900 | 0.854261 | 1.384365e-61 | -8.615850e-47 |
| Msa0509510 | Msa0981900 | 0.829056 | 6.373254e-55 | -8.615850e-47 |
| Msa0512770 | Msa0981900 | 0.811066 | 8.432057e-51 | -8.615850e-47 |
| Msa0517400 | Msa0981900 | 0.818349 | 2.053793e-52 | -8.615850e-47 |
| Msa0547050 | Msa0981900 | 0.811524 | 6.706428e-51 | -8.615850e-47 |
| Msa0549330 | Msa0981900 | 0.810244 | 1.269571e-50 | -8.615850e-47 |
| Msa0558890 | Msa0981900 | 0.839040 | 2.009444e-57 | -8.615850e-47 |
| Msa0568490 | Msa0981900 | 0.802516 | 5.406505e-49 | -8.615850e-47 |
| Msa0582570 | Msa0981900 | 0.801738 | 7.815948e-49 | -8.615850e-47 |
| Msa0601780 | Msa0981900 | 0.805057 | 1.604195e-49 | -8.615850e-47 |
| Msa0850520 | Msa0981900 | 0.803398 | 3.553979e-49 | -8.615850e-47 |
| Msa0855490 | Msa0981900 | 0.810969 | 8.846978e-51 | -8.615850e-47 |
| Msa0860270 | Msa0981900 | 0.812438 | 4.239137e-51 | -8.615850e-47 |
| Msa0887070 | Msa0981900 | 0.812817 | 3.502767e-51 | -8.615850e-47 |
| Msa0897390 | Msa0981900 | 0.848438 | 6.128719e-60 | -8.615850e-47 |
| Msa0923910 | Msa0981900 | 0.810303 | 1.232403e-50 | -8.615850e-47 |
| Msa0975970 | Msa0981900 | 0.805770 | 1.137145e-49 | -8.615850e-47 |
| Msa0978000 | Msa0981900 | 0.845866 | 3.108866e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981900 | MtrunA17_Chr2g0279241 | 93.668 | 379 | 19 | 2 | 1 | 379 | 1 | 374 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981900 | AT5G64230.1 | 42.010 | 388 | 176 | 7 | 18 | 375 | 10 | 378 | 9.35e-89 | 273 |
| Msa0981900 | AT3G19920.1 | 32.911 | 316 | 163 | 5 | 92 | 371 | 111 | 413 | 3.23e-43 | 155 |
| Msa0981900 | AT3G19920.2 | 32.911 | 316 | 163 | 5 | 92 | 371 | 152 | 454 | 3.96e-43 | 156 |
Find 140 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGCGGTGGCGGATAATTT+AGG | 0.162639 | 6_4:+21500663 | Msa0981900:CDS |
| TTCAAAGAAGCCAAAGATTT+TGG | 0.169588 | 6_4:+21501998 | Msa0981900:CDS |
| ACTTATACCATTCATAAATT+TGG | 0.193080 | 6_4:+21502523 | Msa0981900:three_prime_UTR |
| TTTCGCGTTCTTCCCCATTT+TGG | 0.215075 | 6_4:-21499950 | None:intergenic |
| GAGGAGGGTGTGGAGGGTGG+TGG | 0.218739 | 6_4:+21500512 | Msa0981900:CDS |
| CGAAAAGAAAATAACCAAAA+TGG | 0.222336 | 6_4:+21499936 | Msa0981900:exon |
| TACTGCTGATCCTCGTTTGC+AGG | 0.243765 | 6_4:+21500698 | Msa0981900:CDS |
| CTTGCTGTTTAAGTTTAATA+TGG | 0.279159 | 6_4:+21502577 | Msa0981900:three_prime_UTR |
| CGGGGCATCAATGCCATTAC+TGG | 0.280805 | 6_4:-21502110 | None:intergenic |
| TTCGTCTGCGCCAAAATCTT+TGG | 0.282865 | 6_4:-21502008 | None:intergenic |
| GGGTGTGGAGGGTGGTGGGG+TGG | 0.285106 | 6_4:+21500517 | Msa0981900:CDS |
| GGAGGGTGTGGAGGGTGGTG+GGG | 0.287513 | 6_4:+21500514 | Msa0981900:CDS |
| GAGGAGGAGGGTGTGGAGGG+TGG | 0.291263 | 6_4:+21500509 | Msa0981900:CDS |
| TTATGAATGGTATAAGTATA+CGG | 0.296718 | 6_4:-21502517 | None:intergenic |
| AAGAACAGGTTCTTTCTCTT+TGG | 0.297051 | 6_4:+21502209 | Msa0981900:CDS |
| GCTTCGCTTGTTAAACTTGC+AGG | 0.297214 | 6_4:+21500720 | Msa0981900:CDS |
| TGGTTTAAGTGGTGGTGTTC+CGG | 0.299500 | 6_4:+21500560 | Msa0981900:CDS |
| GTGGAGGGTGGTGGGGTGGA+AGG | 0.327039 | 6_4:+21500521 | Msa0981900:CDS |
| AGGAGGGTGTGGAGGGTGGT+GGG | 0.327315 | 6_4:+21500513 | Msa0981900:CDS |
| GTTGCTTTGTCTTCAGCATT+TGG | 0.333264 | 6_4:+21500396 | Msa0981900:CDS |
| TGGTGAGGAGGAGGGTGTGG+AGG | 0.336421 | 6_4:+21500505 | Msa0981900:CDS |
| GGGCGGTGGCGGATAATTTA+GGG | 0.342904 | 6_4:+21500664 | Msa0981900:CDS |
| GTGATGGAGGAGAGTGGTAT+AGG | 0.347523 | 6_4:+21500481 | Msa0981900:CDS |
| AATTGGCAGCGGAGTTGGTT+TGG | 0.367956 | 6_4:+21500589 | Msa0981900:CDS |
| TTGCTTTGTCTTCAGCATTT+GGG | 0.372512 | 6_4:+21500397 | Msa0981900:CDS |
| GAAAAGAAAATAACCAAAAT+GGG | 0.374894 | 6_4:+21499937 | Msa0981900:exon |
| GTGGAAGGTGAAGGGAGGTG+AGG | 0.381406 | 6_4:+21500536 | Msa0981900:CDS |
| GGATGATGAAACGGAGGGTT+TGG | 0.381540 | 6_4:-21500107 | None:intergenic |
| CTCTCATTGATGCTCAATGC+CGG | 0.381820 | 6_4:-21502130 | None:intergenic |
| GGATGGTGAGGAGGAGGGTG+TGG | 0.384248 | 6_4:+21500502 | Msa0981900:CDS |
| GCATAACATGATTGGAGGTT+TGG | 0.384676 | 6_4:-21502268 | None:intergenic |
| GGTGAAAAGGGAAGAGATTA+GGG | 0.395429 | 6_4:-21500025 | None:intergenic |
| GAATGAAACGGAGGAGGAAG+AGG | 0.397994 | 6_4:-21500140 | None:intergenic |
| TGGTGTTCCGGCGGAGAAAT+TGG | 0.402368 | 6_4:+21500572 | Msa0981900:CDS |
| GGTGAGGAGGAGGGTGTGGA+GGG | 0.415395 | 6_4:+21500506 | Msa0981900:CDS |
| TGGTGAAAAGGGAAGAGATT+AGG | 0.417039 | 6_4:-21500026 | None:intergenic |
| GGTATAGGATGGTGAGGAGG+AGG | 0.417760 | 6_4:+21500496 | Msa0981900:CDS |
| TCTCATTGATGCTCAATGCC+GGG | 0.418765 | 6_4:-21502129 | None:intergenic |
| GATCAAGGAGAGGGTGAAGA+AGG | 0.422863 | 6_4:+21500459 | Msa0981900:CDS |
| CATGGCTGCCATTGTTGTGC+AGG | 0.422978 | 6_4:+21502086 | Msa0981900:CDS |
| GGTGGTGGGGTGGAAGGTGA+AGG | 0.423207 | 6_4:+21500527 | Msa0981900:CDS |
| GGCTGAGTTGGAGAGGATGT+TGG | 0.432888 | 6_4:+21502153 | Msa0981900:CDS |
| GTGGGGTGGAAGGTGAAGGG+AGG | 0.443740 | 6_4:+21500531 | Msa0981900:CDS |
| CAACGGCGGTGGTGGTGAAA+AGG | 0.444067 | 6_4:-21500038 | None:intergenic |
| GAATGTCAAAGAACTATCAT+AGG | 0.446139 | 6_4:+21502454 | Msa0981900:three_prime_UTR |
| TGGAAGGTGAAGGGAGGTGA+GGG | 0.448134 | 6_4:+21500537 | Msa0981900:CDS |
| CATCAATGAGAGGGCTGAGT+TGG | 0.451437 | 6_4:+21502141 | Msa0981900:CDS |
| AAGTTCTAAGTTATATCAAC+AGG | 0.453490 | 6_4:+21502414 | Msa0981900:three_prime_UTR |
| GGAGAAATTGGCAGCGGAGT+TGG | 0.458127 | 6_4:+21500584 | Msa0981900:CDS |
| TGTAGTTGACAGAGAAGGAG+AGG | 0.458499 | 6_4:-21500077 | None:intergenic |
| TACACTTCCAAATTTATGAA+TGG | 0.468718 | 6_4:-21502530 | None:intergenic |
| TCCCATTATAAAGCTAGAAA+AGG | 0.472297 | 6_4:+21499882 | Msa0981900:five_prime_UTR |
| AGGATGAGCAATGTGTAAAA+TGG | 0.472912 | 6_4:-21502237 | None:intergenic |
| GTTCGGAGGAGCGGCGGAAG+TGG | 0.474833 | 6_4:-21500003 | None:intergenic |
| GGAAAGCATTATAGAGGGGT+TGG | 0.475155 | 6_4:+21502174 | Msa0981900:CDS |
| GTTGACAGAGAAGGAGAGGA+AGG | 0.478361 | 6_4:-21500073 | None:intergenic |
| AGGAGCGGCGGAAGTGGTAG+TGG | 0.486154 | 6_4:-21499997 | None:intergenic |
| TCCAATCATGTTATGCTCGC+TGG | 0.490686 | 6_4:+21502275 | Msa0981900:CDS |
| GTATAGGATGGTGAGGAGGA+GGG | 0.494671 | 6_4:+21500497 | Msa0981900:CDS |
| CGAAGCGGTTCGATCGTTAA+CGG | 0.496200 | 6_4:+21500314 | Msa0981900:CDS |
| CTGATGAAGCACTTCGGAGA+TGG | 0.497363 | 6_4:+21500643 | Msa0981900:CDS |
| AAGGTGGCGGAGAGAGATCA+AGG | 0.501719 | 6_4:+21500444 | Msa0981900:CDS |
| GGAGGTGAGGGTGGTTTAAG+TGG | 0.502354 | 6_4:+21500549 | Msa0981900:CDS |
| GGAGGAAGAGGTAGAAAGTG+AGG | 0.503057 | 6_4:-21500128 | None:intergenic |
| AGAAAGTGAGGATGATGAAA+CGG | 0.504841 | 6_4:-21500116 | None:intergenic |
| GAGGGTGAAGAAGGTGATGG+AGG | 0.506425 | 6_4:+21500468 | Msa0981900:CDS |
| ACTTCGGAGATGGGCGGTGG+CGG | 0.507790 | 6_4:+21500653 | Msa0981900:CDS |
| AAGAAGGAATGAAACGGAGG+AGG | 0.508172 | 6_4:-21500146 | None:intergenic |
| CTTTGTCTTCAGCATTTGGG+AGG | 0.510290 | 6_4:+21500400 | Msa0981900:CDS |
| AGAGAAGGAGAGGAAGGTGG+TGG | 0.511463 | 6_4:-21500067 | None:intergenic |
| GATGTTGGAAAGCATTATAG+AGG | 0.512128 | 6_4:+21502168 | Msa0981900:CDS |
| CAGTAATGGCATTGATGCCC+CGG | 0.513836 | 6_4:+21502111 | Msa0981900:CDS |
| AACGGCGGTGGTGGTGAAAA+GGG | 0.514502 | 6_4:-21500037 | None:intergenic |
| GGAGAGGGTGAAGAAGGTGA+TGG | 0.514958 | 6_4:+21500465 | Msa0981900:CDS |
| GTGGTGGGGTGGAAGGTGAA+GGG | 0.517185 | 6_4:+21500528 | Msa0981900:CDS |
| ACCAGCGAGCATAACATGAT+TGG | 0.520683 | 6_4:-21502276 | None:intergenic |
| GAGAGTGGTATAGGATGGTG+AGG | 0.520943 | 6_4:+21500490 | Msa0981900:CDS |
| ACAACTACTAGAGCTGAAGT+TGG | 0.523016 | 6_4:-21502388 | None:intergenic |
| ACATTCAAGAAATATTTAAG+TGG | 0.523311 | 6_4:-21502437 | None:intergenic |
| GAGTTTGTAGTTGACAGAGA+AGG | 0.525446 | 6_4:-21500082 | None:intergenic |
| AGCGAGCATAACATGATTGG+AGG | 0.527880 | 6_4:-21502273 | None:intergenic |
| GGAACAAGAGAAGCAAGAAC+AGG | 0.529481 | 6_4:+21502195 | Msa0981900:CDS |
| GAGATTAGGGTTCGGAGGAG+CGG | 0.531244 | 6_4:-21500012 | None:intergenic |
| GGCAGCGGAGTTGGTTTGGA+TGG | 0.531399 | 6_4:+21500593 | Msa0981900:CDS |
| AGTGGTATAGGATGGTGAGG+AGG | 0.536537 | 6_4:+21500493 | Msa0981900:CDS |
| GACAGAGAAGGAGAGGAAGG+TGG | 0.536632 | 6_4:-21500070 | None:intergenic |
| TGATGAAGCACTTCGGAGAT+GGG | 0.536824 | 6_4:+21500644 | Msa0981900:CDS |
| TCCGCTGCCAATTTCTCCGC+CGG | 0.537453 | 6_4:-21500579 | None:intergenic |
| AGCACTTCGGAGATGGGCGG+TGG | 0.537503 | 6_4:+21500650 | Msa0981900:CDS |
| CACATTGCTCATCCTCTGAC+TGG | 0.539240 | 6_4:+21502245 | Msa0981900:CDS |
| AAGGTGAAGGGAGGTGAGGG+TGG | 0.541781 | 6_4:+21500540 | Msa0981900:CDS |
| AAGAAGGTGATGGAGGAGAG+TGG | 0.541790 | 6_4:+21500475 | Msa0981900:CDS |
| TGGGAGGGCGTTGAGGCAGT+TGG | 0.543117 | 6_4:+21500416 | Msa0981900:CDS |
| AAAGGGAAGAGATTAGGGTT+CGG | 0.546803 | 6_4:-21500020 | None:intergenic |
| ATGTTGGAAAGCATTATAGA+GGG | 0.549563 | 6_4:+21502169 | Msa0981900:CDS |
| CAGCATTTGGGAGGGCGTTG+AGG | 0.554300 | 6_4:+21500409 | Msa0981900:CDS |
| TAAGTTTAATATGGTTGTTG+TGG | 0.556437 | 6_4:+21502586 | Msa0981900:three_prime_UTR |
| CAAGATGAAGCAATGCATGC+AGG | 0.557965 | 6_4:+21502042 | Msa0981900:CDS |
| CGGCGGAAGTGGTAGTGGCA+TGG | 0.558032 | 6_4:-21499992 | None:intergenic |
| TGGATCGACAAAGGTAGACT+TGG | 0.560457 | 6_4:-21499840 | None:intergenic |
| ATTAGGGTTCGGAGGAGCGG+CGG | 0.562847 | 6_4:-21500009 | None:intergenic |
| CTCATTGATGCTCAATGCCG+GGG | 0.565754 | 6_4:-21502128 | None:intergenic |
| TTTGTCTTCAGCATTTGGGA+GGG | 0.565879 | 6_4:+21500401 | Msa0981900:CDS |
| TTGTTGTGCAGGGCCAGTAA+TGG | 0.566356 | 6_4:+21502097 | Msa0981900:CDS |
| AACAGCAAGAACCAACATAG+TGG | 0.577713 | 6_4:-21502563 | None:intergenic |
| GTAACGAATGAACACCTTCG+AGG | 0.580463 | 6_4:-21500359 | None:intergenic |
| GGGAAGAGATTAGGGTTCGG+AGG | 0.585432 | 6_4:-21500017 | None:intergenic |
| ATGAGAGGGCTGAGTTGGAG+AGG | 0.589910 | 6_4:+21502146 | Msa0981900:CDS |
| AGCATATCAAGCCACTATGT+TGG | 0.590782 | 6_4:+21502552 | Msa0981900:three_prime_UTR |
| ATCGATGATAATCACCTCGA+AGG | 0.591758 | 6_4:+21500345 | Msa0981900:CDS |
| GGTGAGGGTGGTTTAAGTGG+TGG | 0.593095 | 6_4:+21500552 | Msa0981900:CDS |
| AAGTGAGGATGATGAAACGG+AGG | 0.593185 | 6_4:-21500113 | None:intergenic |
| GTTGAGGCAGTTGGAAGTGA+AGG | 0.595100 | 6_4:+21500425 | Msa0981900:CDS |
| CGGCATTGAGCATCAATGAG+AGG | 0.597450 | 6_4:+21502131 | Msa0981900:CDS |
| GCGGAGAGAGATCAAGGAGA+GGG | 0.598505 | 6_4:+21500450 | Msa0981900:CDS |
| TGTTGGAAAGCATTATAGAG+GGG | 0.598822 | 6_4:+21502170 | Msa0981900:CDS |
| ACAAGCGAAGCCTGCAAACG+AGG | 0.601298 | 6_4:-21500708 | None:intergenic |
| GGCATTGAGCATCAATGAGA+GGG | 0.602387 | 6_4:+21502132 | Msa0981900:CDS |
| TTGGAGGTTTGGCCAGTCAG+AGG | 0.607532 | 6_4:-21502257 | None:intergenic |
| GGTTTGGATGGTGAAGAAGA+TGG | 0.612162 | 6_4:+21500605 | Msa0981900:CDS |
| CTGAGAAAGAGCACGTCCGA+TGG | 0.614254 | 6_4:-21500247 | None:intergenic |
| GAGGCAGTTGGAAGTGAAGG+TGG | 0.615671 | 6_4:+21500428 | Msa0981900:CDS |
| TCCGGCGGAGAAATTGGCAG+CGG | 0.615724 | 6_4:+21500578 | Msa0981900:CDS |
| GTGAAGAAGATGGTGGAGTG+TGG | 0.615961 | 6_4:+21500615 | Msa0981900:CDS |
| ATGGCTGCCATTGTTGTGCA+GGG | 0.617221 | 6_4:+21502087 | Msa0981900:CDS |
| AGTGAGGATGATGAAACGGA+GGG | 0.622730 | 6_4:-21500112 | None:intergenic |
| GGCGGAGAGAGATCAAGGAG+AGG | 0.623247 | 6_4:+21500449 | Msa0981900:CDS |
| GCAGTTGGAAGTGAAGGTGG+CGG | 0.625405 | 6_4:+21500431 | Msa0981900:CDS |
| ACACGAAACGACACTGCCAT+CGG | 0.626709 | 6_4:+21500231 | Msa0981900:CDS |
| TTACTGGCCCTGCACAACAA+TGG | 0.626932 | 6_4:-21502094 | None:intergenic |
| TTTAAGTGGTGGTGTTCCGG+CGG | 0.628276 | 6_4:+21500563 | Msa0981900:CDS |
| ATGAGCAATGTGTAAAATGG+TGG | 0.634351 | 6_4:-21502234 | None:intergenic |
| TGTGCAAAATGGATCGACAA+AGG | 0.637037 | 6_4:-21499849 | None:intergenic |
| TTGGATGGTGAAGAAGATGG+TGG | 0.645396 | 6_4:+21500608 | Msa0981900:CDS |
| TGGAGGAGAGTGGTATAGGA+TGG | 0.647947 | 6_4:+21500485 | Msa0981900:CDS |
| AGTTAAAGATGTTACAGACA+TGG | 0.655695 | 6_4:+21502068 | Msa0981900:CDS |
| AAAAGAAAATAACCAAAATG+GGG | 0.656227 | 6_4:+21499938 | Msa0981900:exon |
| TGAAGCACTTCGGAGATGGG+CGG | 0.665635 | 6_4:+21500647 | Msa0981900:CDS |
| TAGTTCAAGAAAATACGAAG+CGG | 0.688958 | 6_4:+21500299 | Msa0981900:CDS |
| GTTGTGCTGATGAAGCACTT+CGG | 0.693143 | 6_4:+21500637 | Msa0981900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTAAATCATTTAAAA+TGG | + | chr6_4:21501372-21501391 | Msa0981900:intron | 10.0% |
| !!! | TTTAAATCATTTAAAATGGT+TGG | + | chr6_4:21501376-21501395 | Msa0981900:intron | 15.0% |
| !!! | GATTTTTTAAATAGATATAG+TGG | + | chr6_4:21501425-21501444 | Msa0981900:intron | 15.0% |
| !!! | AATTTTAAATGTGTGCAAAA+TGG | - | chr6_4:21499863-21499882 | None:intergenic | 20.0% |
| !! | GAAAAGAAAATAACCAAAAT+GGG | + | chr6_4:21499937-21499956 | Msa0981900:exon | 20.0% |
| !! | AAAAGAAAATAACCAAAATG+GGG | + | chr6_4:21499938-21499957 | Msa0981900:exon | 20.0% |
| !!! | TTTTCATTGAAGAAAAAAGA+AGG | - | chr6_4:21500165-21500184 | None:intergenic | 20.0% |
| !! | ATATGAAGAATGGATATATA+TGG | - | chr6_4:21500748-21500767 | None:intergenic | 20.0% |
| !! | ACATAAGAAAATATGAAGAA+TGG | - | chr6_4:21500758-21500777 | None:intergenic | 20.0% |
| !!! | TAATTTTACAATTTTGACCA+TGG | + | chr6_4:21500804-21500823 | Msa0981900:intron | 20.0% |
| !!! | TTAGTTTAAAGTTAAAACCA+TGG | - | chr6_4:21500824-21500843 | None:intergenic | 20.0% |
| !! | TCTTATTGTATGTATAACTT+TGG | - | chr6_4:21501330-21501349 | None:intergenic | 20.0% |
| !! | ATTTATGATCAAGAATCTAA+TGG | - | chr6_4:21501661-21501680 | None:intergenic | 20.0% |
| !! | TCAAAGCATAAACTAAAAAT+TGG | - | chr6_4:21501739-21501758 | None:intergenic | 20.0% |
| !!! | AAATGTATTTCTAGTTAAAG+TGG | + | chr6_4:21501758-21501777 | Msa0981900:intron | 20.0% |
| !!! | AATGTATTTCTAGTTAAAGT+GGG | + | chr6_4:21501759-21501778 | Msa0981900:intron | 20.0% |
| !! | TACAGAGTAGTTAAATTTAT+AGG | + | chr6_4:21501908-21501927 | Msa0981900:intron | 20.0% |
| !! | ACATTCAAGAAATATTTAAG+TGG | - | chr6_4:21502440-21502459 | None:intergenic | 20.0% |
| !! | TTATGAATGGTATAAGTATA+CGG | - | chr6_4:21502520-21502539 | None:intergenic | 20.0% |
| !! | ACTTATACCATTCATAAATT+TGG | + | chr6_4:21502523-21502542 | Msa0981900:three_prime_UTR | 20.0% |
| ! | CGAAAAGAAAATAACCAAAA+TGG | + | chr6_4:21499936-21499955 | Msa0981900:exon | 25.0% |
| ! | AGAAAAAAGAAGGAATGAAA+CGG | - | chr6_4:21500155-21500174 | None:intergenic | 25.0% |
| !!! | CCAAGTAATTTTGATAAAGA+TGG | - | chr6_4:21500891-21500910 | None:intergenic | 25.0% |
| ! | CCATCTTTATCAAAATTACT+TGG | + | chr6_4:21500888-21500907 | Msa0981900:intron | 25.0% |
| ! | TAACTTTGGATATAATTTCC+CGG | - | chr6_4:21501316-21501335 | None:intergenic | 25.0% |
| ! | TTTATTGGCCATTATAAACT+TGG | - | chr6_4:21501529-21501548 | None:intergenic | 25.0% |
| ! | AATGGCCAATAAACTTATTA+TGG | + | chr6_4:21501536-21501555 | Msa0981900:intron | 25.0% |
| ! | ATGGCCAATAAACTTATTAT+GGG | + | chr6_4:21501537-21501556 | Msa0981900:intron | 25.0% |
| ! | TTGATCATAAATAACTTCCA+AGG | + | chr6_4:21501669-21501688 | Msa0981900:intron | 25.0% |
| ! | TAAACTAAAAATTGGATGAG+AGG | - | chr6_4:21501731-21501750 | None:intergenic | 25.0% |
| !!! | GTTCAAATTTAGAAGTGTTT+AGG | + | chr6_4:21501812-21501831 | Msa0981900:intron | 25.0% |
| !!! | AAGTTCTAAGTTATATCAAC+AGG | + | chr6_4:21502414-21502433 | Msa0981900:three_prime_UTR | 25.0% |
| ! | TACACTTCCAAATTTATGAA+TGG | - | chr6_4:21502533-21502552 | None:intergenic | 25.0% |
| !!! | CTTGCTGTTTAAGTTTAATA+TGG | + | chr6_4:21502577-21502596 | Msa0981900:three_prime_UTR | 25.0% |
| TCCCATTATAAAGCTAGAAA+AGG | + | chr6_4:21499882-21499901 | Msa0981900:five_prime_UTR | 30.0% | |
| !!! | GCCTTTTCTAGCTTTATAAT+GGG | - | chr6_4:21499886-21499905 | None:intergenic | 30.0% |
| !!! | TGCCTTTTCTAGCTTTATAA+TGG | - | chr6_4:21499887-21499906 | None:intergenic | 30.0% |
| ! | TCGTATTTTCTTGAACTAAC+TGG | - | chr6_4:21500297-21500316 | None:intergenic | 30.0% |
| TAGTTCAAGAAAATACGAAG+CGG | + | chr6_4:21500299-21500318 | Msa0981900:CDS | 30.0% | |
| TTTCAAACCACCTATATTCT+CGG | - | chr6_4:21500914-21500933 | None:intergenic | 30.0% | |
| AAAATATTAGCTCGAGAATG+TGG | + | chr6_4:21500931-21500950 | Msa0981900:intron | 30.0% | |
| !! | TTTTGTCTTGTTGCATTACA+AGG | - | chr6_4:21501057-21501076 | None:intergenic | 30.0% |
| TTTAAGCCTTTGTACTCATT+AGG | + | chr6_4:21501269-21501288 | Msa0981900:intron | 30.0% | |
| AACTTTGGATATAATTTCCC+GGG | - | chr6_4:21501315-21501334 | None:intergenic | 30.0% | |
| TCTTGTCTCCAAGTTTATAA+TGG | + | chr6_4:21501518-21501537 | Msa0981900:intron | 30.0% | |
| TGGCCAATAAACTTATTATG+GGG | + | chr6_4:21501538-21501557 | Msa0981900:intron | 30.0% | |
| AAGCCCCATAATAAGTTTAT+TGG | - | chr6_4:21501544-21501563 | None:intergenic | 30.0% | |
| TAAATAACTTCCAAGGATTG+TGG | + | chr6_4:21501676-21501695 | Msa0981900:intron | 30.0% | |
| TTTGAACCACTATGAAGTAT+TGG | - | chr6_4:21501799-21501818 | None:intergenic | 30.0% | |
| GCGAACATTAAAGATATCAT+AGG | - | chr6_4:21501942-21501961 | None:intergenic | 30.0% | |
| ! | TTCAAAGAAGCCAAAGATTT+TGG | + | chr6_4:21501998-21502017 | Msa0981900:CDS | 30.0% |
| AGTTAAAGATGTTACAGACA+TGG | + | chr6_4:21502068-21502087 | Msa0981900:CDS | 30.0% | |
| !! | ATGTTGGAAAGCATTATAGA+GGG | + | chr6_4:21502169-21502188 | Msa0981900:CDS | 30.0% |
| GAATGTCAAAGAACTATCAT+AGG | + | chr6_4:21502454-21502473 | Msa0981900:three_prime_UTR | 30.0% | |
| !! | GGTTATTTTCTTTTCGTACG+CGG | - | chr6_4:21499932-21499951 | None:intergenic | 35.0% |
| AGAAAGTGAGGATGATGAAA+CGG | - | chr6_4:21500119-21500138 | None:intergenic | 35.0% | |
| AAAAAGAAGGAATGAAACGG+AGG | - | chr6_4:21500152-21500171 | None:intergenic | 35.0% | |
| ! | GAACTTATTCTGCGTTTTGA+TGG | - | chr6_4:21500202-21500221 | None:intergenic | 35.0% |
| TTGCTTTGTCTTCAGCATTT+GGG | + | chr6_4:21500397-21500416 | Msa0981900:CDS | 35.0% | |
| AATTACTTGGCCGAGAATAT+AGG | + | chr6_4:21500901-21500920 | Msa0981900:intron | 35.0% | |
| !! | TTGGAAAATTTCTGAGGCAA+AGG | + | chr6_4:21500965-21500984 | Msa0981900:intron | 35.0% |
| TCCAACTTGTAATTCTAGCA+AGG | + | chr6_4:21501086-21501105 | Msa0981900:intron | 35.0% | |
| CCAACTTGTAATTCTAGCAA+GGG | + | chr6_4:21501087-21501106 | Msa0981900:intron | 35.0% | |
| ! | ATAGTAGCTTTTGACACCAA+AGG | + | chr6_4:21501217-21501236 | Msa0981900:intron | 35.0% |
| TTAAGACAAATCGTTGCCTT+TGG | - | chr6_4:21501236-21501255 | None:intergenic | 35.0% | |
| CTAATGCCTAATGAGTACAA+AGG | - | chr6_4:21501278-21501297 | None:intergenic | 35.0% | |
| ! | TTAGATTAGACTAGTTGTCC+CGG | + | chr6_4:21501294-21501313 | Msa0981900:intron | 35.0% |
| ATGACTCCAATACTTCATAG+TGG | + | chr6_4:21501790-21501809 | Msa0981900:intron | 35.0% | |
| !! | GATGTTGGAAAGCATTATAG+AGG | + | chr6_4:21502168-21502187 | Msa0981900:CDS | 35.0% |
| !! | TGTTGGAAAGCATTATAGAG+GGG | + | chr6_4:21502170-21502189 | Msa0981900:CDS | 35.0% |
| AAGAACAGGTTCTTTCTCTT+TGG | + | chr6_4:21502209-21502228 | Msa0981900:CDS | 35.0% | |
| ATGAGCAATGTGTAAAATGG+TGG | - | chr6_4:21502237-21502256 | None:intergenic | 35.0% | |
| AGGATGAGCAATGTGTAAAA+TGG | - | chr6_4:21502240-21502259 | None:intergenic | 35.0% | |
| TGTGCAAAATGGATCGACAA+AGG | - | chr6_4:21499852-21499871 | None:intergenic | 40.0% | |
| AAAGGGAAGAGATTAGGGTT+CGG | - | chr6_4:21500023-21500042 | None:intergenic | 40.0% | |
| GGTGAAAAGGGAAGAGATTA+GGG | - | chr6_4:21500028-21500047 | None:intergenic | 40.0% | |
| TGGTGAAAAGGGAAGAGATT+AGG | - | chr6_4:21500029-21500048 | None:intergenic | 40.0% | |
| GAGTTTGTAGTTGACAGAGA+AGG | - | chr6_4:21500085-21500104 | None:intergenic | 40.0% | |
| !! | CTTATTCTGCGTTTTGATGG+TGG | - | chr6_4:21500199-21500218 | None:intergenic | 40.0% |
| ATCGATGATAATCACCTCGA+AGG | + | chr6_4:21500345-21500364 | Msa0981900:CDS | 40.0% | |
| ! | GTTGCTTTGTCTTCAGCATT+TGG | + | chr6_4:21500396-21500415 | Msa0981900:CDS | 40.0% |
| TTTGTCTTCAGCATTTGGGA+GGG | + | chr6_4:21500401-21500420 | Msa0981900:CDS | 40.0% | |
| ! | GGTAGGTTGGAAAATTTCTG+AGG | + | chr6_4:21500959-21500978 | Msa0981900:intron | 40.0% |
| !! | GAAAATTTCTGAGGCAAAGG+AGG | + | chr6_4:21500968-21500987 | Msa0981900:intron | 40.0% |
| GCAAAGGAGGAAAGATGATA+AGG | + | chr6_4:21500981-21501000 | Msa0981900:intron | 40.0% | |
| CACTTTGTCAAAGCTGTTTG+TGG | + | chr6_4:21501020-21501039 | Msa0981900:intron | 40.0% | |
| CCCTTGCTAGAATTACAAGT+TGG | - | chr6_4:21501090-21501109 | None:intergenic | 40.0% | |
| ! | TAGATTAGACTAGTTGTCCC+GGG | + | chr6_4:21501295-21501314 | Msa0981900:intron | 40.0% |
| TTTCAGTCACAGCAACATTC+TGG | + | chr6_4:21501490-21501509 | Msa0981900:intron | 40.0% | |
| GAGAGGTAACTCTTCATTCT+AGG | - | chr6_4:21501714-21501733 | None:intergenic | 40.0% | |
| CTTTGAACAGAAATGCTGCT+TGG | - | chr6_4:21501985-21502004 | None:intergenic | 40.0% | |
| GCATAACATGATTGGAGGTT+TGG | - | chr6_4:21502271-21502290 | None:intergenic | 40.0% | |
| ACAACTACTAGAGCTGAAGT+TGG | - | chr6_4:21502391-21502410 | None:intergenic | 40.0% | |
| AGCATATCAAGCCACTATGT+TGG | + | chr6_4:21502552-21502571 | Msa0981900:three_prime_UTR | 40.0% | |
| AACAGCAAGAACCAACATAG+TGG | - | chr6_4:21502566-21502585 | None:intergenic | 40.0% | |
| TGGATCGACAAAGGTAGACT+TGG | - | chr6_4:21499843-21499862 | None:intergenic | 45.0% | |
| ! | TTTCGCGTTCTTCCCCATTT+TGG | - | chr6_4:21499953-21499972 | None:intergenic | 45.0% |
| AAGAACGCGAAAAACACGGA+CGG | + | chr6_4:21499961-21499980 | Msa0981900:CDS | 45.0% | |
| !!! | GAAGGTGGTGGTTTTGTCAA+CGG | - | chr6_4:21500058-21500077 | None:intergenic | 45.0% |
| TGTAGTTGACAGAGAAGGAG+AGG | - | chr6_4:21500080-21500099 | None:intergenic | 45.0% | |
| AGTGAGGATGATGAAACGGA+GGG | - | chr6_4:21500115-21500134 | None:intergenic | 45.0% | |
| AAGTGAGGATGATGAAACGG+AGG | - | chr6_4:21500116-21500135 | None:intergenic | 45.0% | |
| AAGAAGGAATGAAACGGAGG+AGG | - | chr6_4:21500149-21500168 | None:intergenic | 45.0% | |
| GTAACGAATGAACACCTTCG+AGG | - | chr6_4:21500362-21500381 | None:intergenic | 45.0% | |
| CTTTGTCTTCAGCATTTGGG+AGG | + | chr6_4:21500400-21500419 | Msa0981900:CDS | 45.0% | |
| ! | TGGTTTAAGTGGTGGTGTTC+CGG | + | chr6_4:21500560-21500579 | Msa0981900:CDS | 45.0% |
| GGTTTGGATGGTGAAGAAGA+TGG | + | chr6_4:21500605-21500624 | Msa0981900:CDS | 45.0% | |
| TTGGATGGTGAAGAAGATGG+TGG | + | chr6_4:21500608-21500627 | Msa0981900:CDS | 45.0% | |
| ! | GTTGTGCTGATGAAGCACTT+CGG | + | chr6_4:21500637-21500656 | Msa0981900:CDS | 45.0% |
| ! | TGATGAAGCACTTCGGAGAT+GGG | + | chr6_4:21500644-21500663 | Msa0981900:CDS | 45.0% |
| ! | GCTTCGCTTGTTAAACTTGC+AGG | + | chr6_4:21500720-21500739 | Msa0981900:CDS | 45.0% |
| TACTTGGCCGAGAATATAGG+TGG | + | chr6_4:21500904-21500923 | Msa0981900:intron | 45.0% | |
| TTCGTCTGCGCCAAAATCTT+TGG | - | chr6_4:21502011-21502030 | None:intergenic | 45.0% | |
| ! | TTTTGGCGCAGACGAAATTG+AGG | + | chr6_4:21502015-21502034 | Msa0981900:CDS | 45.0% |
| CAAGATGAAGCAATGCATGC+AGG | + | chr6_4:21502042-21502061 | Msa0981900:CDS | 45.0% | |
| TCTCATTGATGCTCAATGCC+GGG | - | chr6_4:21502132-21502151 | None:intergenic | 45.0% | |
| CTCTCATTGATGCTCAATGC+CGG | - | chr6_4:21502133-21502152 | None:intergenic | 45.0% | |
| ! | GGCATTGAGCATCAATGAGA+GGG | + | chr6_4:21502132-21502151 | Msa0981900:CDS | 45.0% |
| !! | GGAAAGCATTATAGAGGGGT+TGG | + | chr6_4:21502174-21502193 | Msa0981900:CDS | 45.0% |
| GGAACAAGAGAAGCAAGAAC+AGG | + | chr6_4:21502195-21502214 | Msa0981900:CDS | 45.0% | |
| AGCGAGCATAACATGATTGG+AGG | - | chr6_4:21502276-21502295 | None:intergenic | 45.0% | |
| TCCAATCATGTTATGCTCGC+TGG | + | chr6_4:21502275-21502294 | Msa0981900:CDS | 45.0% | |
| ACCAGCGAGCATAACATGAT+TGG | - | chr6_4:21502279-21502298 | None:intergenic | 45.0% | |
| GGGGAAGAACGCGAAAAACA+CGG | + | chr6_4:21499957-21499976 | Msa0981900:CDS | 50.0% | |
| GTTGACAGAGAAGGAGAGGA+AGG | - | chr6_4:21500076-21500095 | None:intergenic | 50.0% | |
| GGATGATGAAACGGAGGGTT+TGG | - | chr6_4:21500110-21500129 | None:intergenic | 50.0% | |
| GGAGGAAGAGGTAGAAAGTG+AGG | - | chr6_4:21500131-21500150 | None:intergenic | 50.0% | |
| GAATGAAACGGAGGAGGAAG+AGG | - | chr6_4:21500143-21500162 | None:intergenic | 50.0% | |
| ACACGAAACGACACTGCCAT+CGG | + | chr6_4:21500231-21500250 | Msa0981900:CDS | 50.0% | |
| CGAAGCGGTTCGATCGTTAA+CGG | + | chr6_4:21500314-21500333 | Msa0981900:CDS | 50.0% | |
| GTTGAGGCAGTTGGAAGTGA+AGG | + | chr6_4:21500425-21500444 | Msa0981900:CDS | 50.0% | |
| GATCAAGGAGAGGGTGAAGA+AGG | + | chr6_4:21500459-21500478 | Msa0981900:CDS | 50.0% | |
| !! | AAGAAGGTGATGGAGGAGAG+TGG | + | chr6_4:21500475-21500494 | Msa0981900:CDS | 50.0% |
| ! | GTGATGGAGGAGAGTGGTAT+AGG | + | chr6_4:21500481-21500500 | Msa0981900:CDS | 50.0% |
| TGGAGGAGAGTGGTATAGGA+TGG | + | chr6_4:21500485-21500504 | Msa0981900:CDS | 50.0% | |
| GAGAGTGGTATAGGATGGTG+AGG | + | chr6_4:21500490-21500509 | Msa0981900:CDS | 50.0% | |
| AGTGGTATAGGATGGTGAGG+AGG | + | chr6_4:21500493-21500512 | Msa0981900:CDS | 50.0% | |
| GTATAGGATGGTGAGGAGGA+GGG | + | chr6_4:21500497-21500516 | Msa0981900:CDS | 50.0% | |
| ! | TTTAAGTGGTGGTGTTCCGG+CGG | + | chr6_4:21500563-21500582 | Msa0981900:CDS | 50.0% |
| ! | AATTGGCAGCGGAGTTGGTT+TGG | + | chr6_4:21500589-21500608 | Msa0981900:CDS | 50.0% |
| !! | GTGAAGAAGATGGTGGAGTG+TGG | + | chr6_4:21500615-21500634 | Msa0981900:CDS | 50.0% |
| ! | CTGATGAAGCACTTCGGAGA+TGG | + | chr6_4:21500643-21500662 | Msa0981900:CDS | 50.0% |
| TACTGCTGATCCTCGTTTGC+AGG | + | chr6_4:21500698-21500717 | Msa0981900:CDS | 50.0% | |
| TAGCTCGAGAATGTGGACGT+AGG | + | chr6_4:21500938-21500957 | Msa0981900:intron | 50.0% | |
| TCGAGAATGTGGACGTAGGT+AGG | + | chr6_4:21500942-21500961 | Msa0981900:intron | 50.0% | |
| GAATGTGGACGTAGGTAGGT+TGG | + | chr6_4:21500946-21500965 | Msa0981900:intron | 50.0% | |
| TGCAGAGAGACCACAATCCT+TGG | - | chr6_4:21501689-21501708 | None:intergenic | 50.0% | |
| ATGGCTGCCATTGTTGTGCA+GGG | + | chr6_4:21502087-21502106 | Msa0981900:CDS | 50.0% | |
| TTACTGGCCCTGCACAACAA+TGG | - | chr6_4:21502097-21502116 | None:intergenic | 50.0% | |
| TTGTTGTGCAGGGCCAGTAA+TGG | + | chr6_4:21502097-21502116 | Msa0981900:CDS | 50.0% | |
| !! | CAGTAATGGCATTGATGCCC+CGG | + | chr6_4:21502111-21502130 | Msa0981900:CDS | 50.0% |
| CTCATTGATGCTCAATGCCG+GGG | - | chr6_4:21502131-21502150 | None:intergenic | 50.0% | |
| ! | CGGCATTGAGCATCAATGAG+AGG | + | chr6_4:21502131-21502150 | Msa0981900:CDS | 50.0% |
| CATCAATGAGAGGGCTGAGT+TGG | + | chr6_4:21502141-21502160 | Msa0981900:CDS | 50.0% | |
| CACATTGCTCATCCTCTGAC+TGG | + | chr6_4:21502245-21502264 | Msa0981900:CDS | 50.0% | |
| AACGCGAAAAACACGGACGG+CGG | + | chr6_4:21499964-21499983 | Msa0981900:CDS | 55.0% | |
| GAGATTAGGGTTCGGAGGAG+CGG | - | chr6_4:21500015-21500034 | None:intergenic | 55.0% | |
| GGGAAGAGATTAGGGTTCGG+AGG | - | chr6_4:21500020-21500039 | None:intergenic | 55.0% | |
| ! | AACGGCGGTGGTGGTGAAAA+GGG | - | chr6_4:21500040-21500059 | None:intergenic | 55.0% |
| !!! | GGTGGTGGTTTTGTCAACGG+CGG | - | chr6_4:21500055-21500074 | None:intergenic | 55.0% |
| AGAGAAGGAGAGGAAGGTGG+TGG | - | chr6_4:21500070-21500089 | None:intergenic | 55.0% | |
| GACAGAGAAGGAGAGGAAGG+TGG | - | chr6_4:21500073-21500092 | None:intergenic | 55.0% | |
| ! | CTGAGAAAGAGCACGTCCGA+TGG | - | chr6_4:21500250-21500269 | None:intergenic | 55.0% |
| GAGGCAGTTGGAAGTGAAGG+TGG | + | chr6_4:21500428-21500447 | Msa0981900:CDS | 55.0% | |
| GCAGTTGGAAGTGAAGGTGG+CGG | + | chr6_4:21500431-21500450 | Msa0981900:CDS | 55.0% | |
| !! | AAGGTGGCGGAGAGAGATCA+AGG | + | chr6_4:21500444-21500463 | Msa0981900:CDS | 55.0% |
| GCGGAGAGAGATCAAGGAGA+GGG | + | chr6_4:21500450-21500469 | Msa0981900:CDS | 55.0% | |
| GGAGAGGGTGAAGAAGGTGA+TGG | + | chr6_4:21500465-21500484 | Msa0981900:CDS | 55.0% | |
| ! | GAGGGTGAAGAAGGTGATGG+AGG | + | chr6_4:21500468-21500487 | Msa0981900:CDS | 55.0% |
| GGTATAGGATGGTGAGGAGG+AGG | + | chr6_4:21500496-21500515 | Msa0981900:CDS | 55.0% | |
| TGGAAGGTGAAGGGAGGTGA+GGG | + | chr6_4:21500537-21500556 | Msa0981900:CDS | 55.0% | |
| GGAGGTGAGGGTGGTTTAAG+TGG | + | chr6_4:21500549-21500568 | Msa0981900:CDS | 55.0% | |
| GGTGAGGGTGGTTTAAGTGG+TGG | + | chr6_4:21500552-21500571 | Msa0981900:CDS | 55.0% | |
| TGGTGTTCCGGCGGAGAAAT+TGG | + | chr6_4:21500572-21500591 | Msa0981900:CDS | 55.0% | |
| GGAGAAATTGGCAGCGGAGT+TGG | + | chr6_4:21500584-21500603 | Msa0981900:CDS | 55.0% | |
| ! | TGAAGCACTTCGGAGATGGG+CGG | + | chr6_4:21500647-21500666 | Msa0981900:CDS | 55.0% |
| !! | TGGGCGGTGGCGGATAATTT+AGG | + | chr6_4:21500663-21500682 | Msa0981900:CDS | 55.0% |
| !! | GGGCGGTGGCGGATAATTTA+GGG | + | chr6_4:21500664-21500683 | Msa0981900:CDS | 55.0% |
| ACAAGCGAAGCCTGCAAACG+AGG | - | chr6_4:21500711-21500730 | None:intergenic | 55.0% | |
| CATGGCTGCCATTGTTGTGC+AGG | + | chr6_4:21502086-21502105 | Msa0981900:CDS | 55.0% | |
| ! | CGGGGCATCAATGCCATTAC+TGG | - | chr6_4:21502113-21502132 | None:intergenic | 55.0% |
| ! | ATGAGAGGGCTGAGTTGGAG+AGG | + | chr6_4:21502146-21502165 | Msa0981900:CDS | 55.0% |
| ! | GGCTGAGTTGGAGAGGATGT+TGG | + | chr6_4:21502153-21502172 | Msa0981900:CDS | 55.0% |
| TTGGAGGTTTGGCCAGTCAG+AGG | - | chr6_4:21502260-21502279 | None:intergenic | 55.0% | |
| ATTAGGGTTCGGAGGAGCGG+CGG | - | chr6_4:21500012-21500031 | None:intergenic | 60.0% | |
| ! | CAACGGCGGTGGTGGTGAAA+AGG | - | chr6_4:21500041-21500060 | None:intergenic | 60.0% |
| !! | GGTTTTGTCAACGGCGGTGG+TGG | - | chr6_4:21500049-21500068 | None:intergenic | 60.0% |
| !!! | GGTGGTTTTGTCAACGGCGG+TGG | - | chr6_4:21500052-21500071 | None:intergenic | 60.0% |
| !! | CAGCATTTGGGAGGGCGTTG+AGG | + | chr6_4:21500409-21500428 | Msa0981900:CDS | 60.0% |
| GGCGGAGAGAGATCAAGGAG+AGG | + | chr6_4:21500449-21500468 | Msa0981900:CDS | 60.0% | |
| ! | GTGGTGGGGTGGAAGGTGAA+GGG | + | chr6_4:21500528-21500547 | Msa0981900:CDS | 60.0% |
| GTGGAAGGTGAAGGGAGGTG+AGG | + | chr6_4:21500536-21500555 | Msa0981900:CDS | 60.0% | |
| AAGGTGAAGGGAGGTGAGGG+TGG | + | chr6_4:21500540-21500559 | Msa0981900:CDS | 60.0% | |
| TCCGGCGGAGAAATTGGCAG+CGG | + | chr6_4:21500578-21500597 | Msa0981900:CDS | 60.0% | |
| TCCGCTGCCAATTTCTCCGC+CGG | - | chr6_4:21500582-21500601 | None:intergenic | 60.0% | |
| !! | GGCAGCGGAGTTGGTTTGGA+TGG | + | chr6_4:21500593-21500612 | Msa0981900:CDS | 60.0% |
| GCGAAAAACACGGACGGCGG+CGG | + | chr6_4:21499967-21499986 | Msa0981900:CDS | 65.0% | |
| !! | CGGCGGAAGTGGTAGTGGCA+TGG | - | chr6_4:21499995-21500014 | None:intergenic | 65.0% |
| AGGAGCGGCGGAAGTGGTAG+TGG | - | chr6_4:21500000-21500019 | None:intergenic | 65.0% | |
| !! | TGGGAGGGCGTTGAGGCAGT+TGG | + | chr6_4:21500416-21500435 | Msa0981900:CDS | 65.0% |
| GGATGGTGAGGAGGAGGGTG+TGG | + | chr6_4:21500502-21500521 | Msa0981900:CDS | 65.0% | |
| ! | TGGTGAGGAGGAGGGTGTGG+AGG | + | chr6_4:21500505-21500524 | Msa0981900:CDS | 65.0% |
| ! | GGTGAGGAGGAGGGTGTGGA+GGG | + | chr6_4:21500506-21500525 | Msa0981900:CDS | 65.0% |
| ! | AGGAGGGTGTGGAGGGTGGT+GGG | + | chr6_4:21500513-21500532 | Msa0981900:CDS | 65.0% |
| !! | GGTGGTGGGGTGGAAGGTGA+AGG | + | chr6_4:21500527-21500546 | Msa0981900:CDS | 65.0% |
| GTGGGGTGGAAGGTGAAGGG+AGG | + | chr6_4:21500531-21500550 | Msa0981900:CDS | 65.0% | |
| AGCACTTCGGAGATGGGCGG+TGG | + | chr6_4:21500650-21500669 | Msa0981900:CDS | 65.0% | |
| ACTTCGGAGATGGGCGGTGG+CGG | + | chr6_4:21500653-21500672 | Msa0981900:CDS | 65.0% | |
| GTTCGGAGGAGCGGCGGAAG+TGG | - | chr6_4:21500006-21500025 | None:intergenic | 70.0% | |
| ! | GAGGAGGAGGGTGTGGAGGG+TGG | + | chr6_4:21500509-21500528 | Msa0981900:CDS | 70.0% |
| ! | GAGGAGGGTGTGGAGGGTGG+TGG | + | chr6_4:21500512-21500531 | Msa0981900:CDS | 70.0% |
| ! | GGAGGGTGTGGAGGGTGGTG+GGG | + | chr6_4:21500514-21500533 | Msa0981900:CDS | 70.0% |
| !! | GTGGAGGGTGGTGGGGTGGA+AGG | + | chr6_4:21500521-21500540 | Msa0981900:CDS | 70.0% |
| !! | GGGTGTGGAGGGTGGTGGGG+TGG | + | chr6_4:21500517-21500536 | Msa0981900:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 21499839 | 21502605 | 21499839 | ID=Msa0981900;Name=Msa0981900 |
| chr6_4 | mRNA | 21499839 | 21502605 | 21499839 | ID=Msa0981900-mRNA-1;Parent=Msa0981900;Name=Msa0981900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116|1|1|1|1|1|2|263|379 |
| chr6_4 | exon | 21499839 | 21500741 | 21499839 | ID=Msa0981900-mRNA-1:exon:6630;Parent=Msa0981900-mRNA-1 |
| chr6_4 | exon | 21501990 | 21502605 | 21501990 | ID=Msa0981900-mRNA-1:exon:6631;Parent=Msa0981900-mRNA-1 |
| chr6_4 | five_prime_UTR | 21499839 | 21499954 | 21499839 | ID=Msa0981900-mRNA-1:five_prime_utr;Parent=Msa0981900-mRNA-1 |
| chr6_4 | CDS | 21499955 | 21500741 | 21499955 | ID=Msa0981900-mRNA-1:cds;Parent=Msa0981900-mRNA-1 |
| chr6_4 | CDS | 21501990 | 21502342 | 21501990 | ID=Msa0981900-mRNA-1:cds;Parent=Msa0981900-mRNA-1 |
| chr6_4 | three_prime_UTR | 21502343 | 21502605 | 21502343 | ID=Msa0981900-mRNA-1:three_prime_utr;Parent=Msa0981900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
