Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152480 | XP_039688129.1 | 93.548 | 124 | 7 | 1 | 1 | 124 | 1 | 123 | 1.87e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152480 | A0A072VFR2 | 93.548 | 124 | 7 | 1 | 1 | 124 | 1 | 123 | 8.93e-77 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0152480 | 0.815531 | 8.813630e-52 | -8.615850e-47 |
| Msa0124130 | Msa0152480 | 0.836232 | 1.055851e-56 | -8.615850e-47 |
| Msa0149140 | Msa0152480 | 0.836577 | 8.623735e-57 | -8.615850e-47 |
| Msa0152480 | Msa0152500 | 0.946928 | 1.803567e-105 | -8.615850e-47 |
| Msa0152480 | Msa0306120 | 0.801203 | 1.006115e-48 | -8.615850e-47 |
| Msa0152480 | Msa0322830 | 0.825109 | 5.608294e-54 | -8.615850e-47 |
| Msa0152480 | Msa0322860 | 0.830042 | 3.668993e-55 | -8.615850e-47 |
| Msa0152480 | Msa0329620 | 0.808533 | 2.955609e-50 | -8.615850e-47 |
| Msa0152480 | Msa0359250 | 0.836895 | 7.158160e-57 | -8.615850e-47 |
| Msa0152480 | Msa0406000 | 0.829987 | 3.784790e-55 | -8.615850e-47 |
| Msa0152480 | Msa0423100 | 0.818217 | 2.200060e-52 | -8.615850e-47 |
| Msa0152480 | Msa0424330 | 0.800496 | 1.402739e-48 | -8.615850e-47 |
| Msa0152480 | Msa0424340 | 0.823387 | 1.423641e-53 | -8.615850e-47 |
| Msa0152480 | Msa0424350 | 0.811024 | 8.608623e-51 | -8.615850e-47 |
| Msa0152480 | Msa0451400 | 0.828729 | 7.644569e-55 | -8.615850e-47 |
| Msa0152480 | Msa0492190 | 0.813810 | 2.119399e-51 | -8.615850e-47 |
| Msa0152480 | Msa0534930 | 0.808723 | 2.691464e-50 | -8.615850e-47 |
| Msa0152480 | Msa0575740 | 0.841712 | 4.024593e-58 | -8.615850e-47 |
| Msa0152480 | Msa0591800 | 0.813987 | 1.937485e-51 | -8.615850e-47 |
| Msa0152480 | Msa0669840 | 0.825383 | 4.831393e-54 | -8.615850e-47 |
| Msa0152480 | Msa0711320 | 0.821354 | 4.220911e-53 | -8.615850e-47 |
| Msa0152480 | Msa0725860 | 0.826618 | 2.457201e-54 | -8.615850e-47 |
| Msa0152480 | Msa0739580 | 0.811533 | 6.675031e-51 | -8.615850e-47 |
| Msa0152480 | Msa0751890 | 0.802096 | 6.596477e-49 | -8.615850e-47 |
| Msa0152480 | Msa0752840 | 0.829345 | 5.423066e-55 | -8.615850e-47 |
| Msa0152480 | Msa0786040 | 0.814337 | 1.621714e-51 | -8.615850e-47 |
| Msa0152480 | Msa0823400 | 0.808952 | 2.405477e-50 | -8.615850e-47 |
| Msa0152480 | Msa0831940 | 0.835201 | 1.925960e-56 | -8.615850e-47 |
| Msa0152480 | Msa0860280 | 0.802590 | 5.218543e-49 | -8.615850e-47 |
| Msa0152480 | Msa0862310 | 0.818163 | 2.261906e-52 | -8.615850e-47 |
| Msa0152480 | Msa0867350 | 0.822402 | 2.414466e-53 | -8.615850e-47 |
| Msa0152480 | Msa0885060 | 0.803778 | 2.962947e-49 | -8.615850e-47 |
| Msa0152480 | Msa0898730 | 0.807080 | 6.018320e-50 | -8.615850e-47 |
| Msa0152480 | Msa0922750 | 0.811892 | 5.578231e-51 | -8.615850e-47 |
| Msa0152480 | Msa0929870 | 0.804692 | 1.912160e-49 | -8.615850e-47 |
| Msa0152480 | Msa0953540 | 0.809628 | 1.722835e-50 | -8.615850e-47 |
| Msa0152480 | Msa0961560 | 0.812549 | 4.009699e-51 | -8.615850e-47 |
| Msa0152480 | Msa0965310 | 0.803606 | 3.216551e-49 | -8.615850e-47 |
| Msa0152480 | Msa0996270 | 0.831942 | 1.253879e-55 | -8.615850e-47 |
| Msa0152480 | Msa0999300 | 0.800639 | 1.311745e-48 | -8.615850e-47 |
| Msa0152480 | Msa0999340 | 0.816894 | 4.370978e-52 | -8.615850e-47 |
| Msa0152480 | Msa0999360 | 0.805484 | 1.305858e-49 | -8.615850e-47 |
| Msa0152480 | Msa1001890 | 0.800805 | 1.212904e-48 | -8.615850e-47 |
| Msa0152480 | Msa1084520 | 0.815477 | 9.062462e-52 | -8.615850e-47 |
| Msa0152480 | Msa1125810 | 0.822407 | 2.408076e-53 | -8.615850e-47 |
| Msa0152480 | Msa1145020 | 0.828096 | 1.087112e-54 | -8.615850e-47 |
| Msa0152480 | Msa1171310 | 0.839054 | 1.992602e-57 | -8.615850e-47 |
| Msa0152480 | Msa1228190 | 0.831166 | 1.947475e-55 | -8.615850e-47 |
| Msa0152480 | Msa1271260 | 0.828551 | 8.441346e-55 | -8.615850e-47 |
| Msa0152480 | Msa1305510 | 0.820176 | 7.877764e-53 | -8.615850e-47 |
| Msa0152480 | Msa1378870 | 0.812784 | 3.562023e-51 | -8.615850e-47 |
| Msa0152480 | Msa1379970 | 0.803753 | 2.998532e-49 | -8.615850e-47 |
| Msa0152480 | Msa1394890 | 0.824799 | 6.635168e-54 | -8.615850e-47 |
| Msa0152480 | Msa1421550 | 0.811919 | 5.502223e-51 | -8.615850e-47 |
| Msa0152480 | Msa1435480 | 0.805220 | 1.482819e-49 | -8.615850e-47 |
| Msa0152480 | Msa1459530 | 0.806038 | 9.989256e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152480 | MtrunA17_Chr1g0161551 | 92.857 | 84 | 5 | 1 | 1 | 84 | 1 | 83 | 2.95e-50 | 154 |
| Msa0152480 | MtrunA17_Chr6g0479181 | 41.228 | 114 | 63 | 2 | 9 | 122 | 53 | 162 | 3.21e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152480 | AT1G14760.2 | 42.157 | 102 | 54 | 3 | 22 | 119 | 32 | 132 | 1.44e-19 | 78.6 |
| Msa0152480 | AT1G70510.1 | 36.792 | 106 | 59 | 2 | 22 | 122 | 68 | 170 | 6.75e-12 | 61.2 |
| Msa0152480 | AT1G23380.1 | 34.906 | 106 | 61 | 2 | 22 | 122 | 84 | 186 | 2.31e-11 | 59.7 |
Find 19 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATGGAGGGTAAAGAAAT+TGG | 0.288718 | 1_4:+15158837 | None:intergenic |
| GTTTGGACTAGTTGTTGTTT+TGG | 0.335695 | 1_4:-15159526 | None:intergenic |
| CCATCCTTTGTTTGAAGCAT+TGG | 0.359729 | 1_4:+15158926 | Msa0152480:CDS |
| TGATCAAGCTCTGAATTGTT+TGG | 0.360004 | 1_4:-15159543 | None:intergenic |
| TTCAGAGCTTGATCACTTCA+TGG | 0.367274 | 1_4:+15159551 | Msa0152480:CDS |
| AAGTGATGCATGGAAGAAAT+TGG | 0.438853 | 1_4:+15159491 | Msa0152480:CDS |
| GTCTCACATCAATTGTTTGA+AGG | 0.470627 | 1_4:+15158953 | Msa0152480:CDS |
| TATATTCAACTGCAGGAACT+TGG | 0.501461 | 1_4:+15160800 | Msa0152480:CDS |
| GTTCATCAATCACGTCTTTG+AGG | 0.505826 | 1_4:-15160742 | None:intergenic |
| AAAAGAAAGTGAAAATGAAG+AGG | 0.568561 | 1_4:+15158881 | Msa0152480:CDS |
| CCAATGCTTCAAACAAAGGA+TGG | 0.572089 | 1_4:-15158926 | None:intergenic |
| TTGATATAACAAGTGATGCA+TGG | 0.576358 | 1_4:+15159481 | Msa0152480:CDS |
| GGAAAGGGAAGTGATGATGT+AGG | 0.576930 | 1_4:+15158858 | Msa0152480:CDS |
| TGCTACGTATATTCAACTGC+AGG | 0.578517 | 1_4:+15160793 | Msa0152480:CDS |
| TCAACCAATGCTTCAAACAA+AGG | 0.579326 | 1_4:-15158930 | None:intergenic |
| GAGGGTAAAGAAATTGGAAA+GGG | 0.582588 | 1_4:+15158843 | Msa0152480:CDS |
| GGAGGGTAAAGAAATTGGAA+AGG | 0.606364 | 1_4:+15158842 | Msa0152480:CDS |
| TATTTCTTAGGTCGGATCTG+AGG | 0.611391 | 1_4:+15159446 | Msa0152480:intron |
| CAACTGCAGGAACTTGGTGA+AGG | 0.630993 | 1_4:+15160806 | Msa0152480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATAGTGTATAATTA+TGG | + | chr1_4:15159100-15159119 | Msa0152480:intron | 10.0% |
| !! | ATATTAATATATACACAAAA+AGG | + | chr1_4:15159177-15159196 | Msa0152480:intron | 10.0% |
| !! | TATTAATATATACACAAAAA+GGG | + | chr1_4:15159178-15159197 | Msa0152480:intron | 10.0% |
| !! | ATAGATATATAAATTCTTTA+CGG | + | chr1_4:15159777-15159796 | Msa0152480:intron | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15160315-15160334 | None:intergenic | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15160315-15160334 | None:intergenic | 10.0% |
| !! | AATAATATAGTGTATAATTA+TGG | + | chr1_4:15159100-15159119 | Msa0152480:intron | 10.0% |
| !! | ATATTAATATATACACAAAA+AGG | + | chr1_4:15159177-15159196 | Msa0152480:intron | 10.0% |
| !! | TATTAATATATACACAAAAA+GGG | + | chr1_4:15159178-15159197 | Msa0152480:intron | 10.0% |
| !! | ATAGATATATAAATTCTTTA+CGG | + | chr1_4:15159777-15159796 | Msa0152480:intron | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15160315-15160334 | None:intergenic | 10.0% |
| !! | AAATAATAATCTATAAAAGA+TGG | - | chr1_4:15160315-15160334 | None:intergenic | 10.0% |
| !! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_4:15158999-15159018 | Msa0152480:intron | 15.0% |
| !! | GTATTACATACATTAATTAA+TGG | + | chr1_4:15159573-15159592 | Msa0152480:intron | 15.0% |
| !!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_4:15159814-15159833 | None:intergenic | 15.0% |
| !!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_4:15159820-15159839 | Msa0152480:intron | 15.0% |
| !! | ACAACTTAAATTTATTTAAG+AGG | + | chr1_4:15158999-15159018 | Msa0152480:intron | 15.0% |
| !! | GTATTACATACATTAATTAA+TGG | + | chr1_4:15159573-15159592 | Msa0152480:intron | 15.0% |
| !!! | TTGTTACTTAGTAATTAATT+TGG | - | chr1_4:15159814-15159833 | None:intergenic | 15.0% |
| !!! | TTACTAAGTAACAATTTTTA+TGG | + | chr1_4:15159820-15159839 | Msa0152480:intron | 15.0% |
| !! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_4:15159114-15159133 | Msa0152480:intron | 20.0% |
| !!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_4:15159362-15159381 | Msa0152480:intron | 20.0% |
| !!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_4:15159374-15159393 | Msa0152480:intron | 20.0% |
| !!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_4:15159805-15159824 | None:intergenic | 20.0% |
| !! | AATCATATTATATGTGAACT+AGG | - | chr1_4:15160681-15160700 | None:intergenic | 20.0% |
| !! | TATGATTCATTTATGTACAT+AGG | + | chr1_4:15160694-15160713 | Msa0152480:intron | 20.0% |
| !! | TAATTATGGAAAGATAGTTT+AGG | + | chr1_4:15159114-15159133 | Msa0152480:intron | 20.0% |
| !!! | TCTTTTTTGCAAAAGAAAAA+TGG | + | chr1_4:15159362-15159381 | Msa0152480:intron | 20.0% |
| !!! | AAGAAAAATGGATTAATCAA+AGG | + | chr1_4:15159374-15159393 | Msa0152480:intron | 20.0% |
| !!! | AGTAATTAATTTGGATGTTT+TGG | - | chr1_4:15159805-15159824 | None:intergenic | 20.0% |
| !! | AATCATATTATATGTGAACT+AGG | - | chr1_4:15160681-15160700 | None:intergenic | 20.0% |
| !! | TATGATTCATTTATGTACAT+AGG | + | chr1_4:15160694-15160713 | Msa0152480:intron | 20.0% |
| ! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_4:15158881-15158900 | Msa0152480:CDS | 25.0% |
| ! | TAATTTCATTCCATACATGT+TGG | - | chr1_4:15159406-15159425 | None:intergenic | 25.0% |
| !! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_4:15159434-15159453 | Msa0152480:intron | 25.0% |
| ! | CATACATTAATTAATGGTCA+TGG | + | chr1_4:15159579-15159598 | Msa0152480:intron | 25.0% |
| ! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_4:15159733-15159752 | Msa0152480:intron | 25.0% |
| ! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_4:15159998-15160017 | Msa0152480:intron | 25.0% |
| !!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_4:15160067-15160086 | None:intergenic | 25.0% |
| ! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_4:15160092-15160111 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_4:15160575-15160594 | Msa0152480:intron | 25.0% |
| ! | AAAAGAAAGTGAAAATGAAG+AGG | + | chr1_4:15158881-15158900 | Msa0152480:CDS | 25.0% |
| ! | TAATTTCATTCCATACATGT+TGG | - | chr1_4:15159406-15159425 | None:intergenic | 25.0% |
| !! | TCTTCATTCCTTTATTTCTT+AGG | + | chr1_4:15159434-15159453 | Msa0152480:intron | 25.0% |
| ! | CATACATTAATTAATGGTCA+TGG | + | chr1_4:15159579-15159598 | Msa0152480:intron | 25.0% |
| ! | TGTGTGTAAAATAGATATTG+TGG | + | chr1_4:15159733-15159752 | Msa0152480:intron | 25.0% |
| ! | TCATGAAAGTTGTCTATTAA+TGG | + | chr1_4:15159998-15160017 | Msa0152480:intron | 25.0% |
| !!! | ACGTAAATTGAAAGTTTTGA+AGG | - | chr1_4:15160067-15160086 | None:intergenic | 25.0% |
| ! | GTAACTAAAACTTGTCATTA+TGG | - | chr1_4:15160092-15160111 | None:intergenic | 25.0% |
| !!! | TTTTTAAGCAAGCATAAACT+AGG | + | chr1_4:15160575-15160594 | Msa0152480:intron | 25.0% |
| TGTAAGTAATGTATTCCTCA+TGG | - | chr1_4:15159150-15159169 | None:intergenic | 30.0% | |
| AGGGTAAAAAAGACAACAAA+AGG | + | chr1_4:15159197-15159216 | Msa0152480:intron | 30.0% | |
| GGGTAAAAAAGACAACAAAA+GGG | + | chr1_4:15159198-15159217 | Msa0152480:intron | 30.0% | |
| AAGGATATATCCAACATGTA+TGG | + | chr1_4:15159393-15159412 | Msa0152480:intron | 30.0% | |
| ! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_4:15159438-15159457 | Msa0152480:intron | 30.0% |
| TTGATATAACAAGTGATGCA+TGG | + | chr1_4:15159481-15159500 | Msa0152480:CDS | 30.0% | |
| ! | AATCAAATTTGTTCGCTCAA+TGG | + | chr1_4:15159685-15159704 | Msa0152480:intron | 30.0% |
| GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_4:15159880-15159899 | None:intergenic | 30.0% | |
| ! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_4:15160767-15160786 | None:intergenic | 30.0% |
| TGTAAGTAATGTATTCCTCA+TGG | - | chr1_4:15159150-15159169 | None:intergenic | 30.0% | |
| AGGGTAAAAAAGACAACAAA+AGG | + | chr1_4:15159197-15159216 | Msa0152480:intron | 30.0% | |
| GGGTAAAAAAGACAACAAAA+GGG | + | chr1_4:15159198-15159217 | Msa0152480:intron | 30.0% | |
| AAGGATATATCCAACATGTA+TGG | + | chr1_4:15159393-15159412 | Msa0152480:intron | 30.0% | |
| ! | CATTCCTTTATTTCTTAGGT+CGG | + | chr1_4:15159438-15159457 | Msa0152480:intron | 30.0% |
| TTGATATAACAAGTGATGCA+TGG | + | chr1_4:15159481-15159500 | Msa0152480:CDS | 30.0% | |
| ! | AATCAAATTTGTTCGCTCAA+TGG | + | chr1_4:15159685-15159704 | Msa0152480:intron | 30.0% |
| GTCAAAAAGTTGTTGCAAAA+TGG | - | chr1_4:15159880-15159899 | None:intergenic | 30.0% | |
| ! | AAAGCTTTTGCTTCTTTTGT+TGG | - | chr1_4:15160767-15160786 | None:intergenic | 30.0% |
| GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_4:15158843-15158862 | Msa0152480:CDS | 35.0% | |
| TCAACCAATGCTTCAAACAA+AGG | - | chr1_4:15158933-15158952 | None:intergenic | 35.0% | |
| GTCTCACATCAATTGTTTGA+AGG | + | chr1_4:15158953-15158972 | Msa0152480:CDS | 35.0% | |
| AGATCCGACCTAAGAAATAA+AGG | - | chr1_4:15159445-15159464 | None:intergenic | 35.0% | |
| AAGTGATGCATGGAAGAAAT+TGG | + | chr1_4:15159491-15159510 | Msa0152480:CDS | 35.0% | |
| !!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_4:15159529-15159548 | None:intergenic | 35.0% |
| !! | TGATCAAGCTCTGAATTGTT+TGG | - | chr1_4:15159546-15159565 | None:intergenic | 35.0% |
| !!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_4:15160709-15160728 | Msa0152480:intron | 35.0% |
| TATATTCAACTGCAGGAACT+TGG | + | chr1_4:15160800-15160819 | Msa0152480:CDS | 35.0% | |
| GAGGGTAAAGAAATTGGAAA+GGG | + | chr1_4:15158843-15158862 | Msa0152480:CDS | 35.0% | |
| TCAACCAATGCTTCAAACAA+AGG | - | chr1_4:15158933-15158952 | None:intergenic | 35.0% | |
| GTCTCACATCAATTGTTTGA+AGG | + | chr1_4:15158953-15158972 | Msa0152480:CDS | 35.0% | |
| AGATCCGACCTAAGAAATAA+AGG | - | chr1_4:15159445-15159464 | None:intergenic | 35.0% | |
| AAGTGATGCATGGAAGAAAT+TGG | + | chr1_4:15159491-15159510 | Msa0152480:CDS | 35.0% | |
| !!! | GTTTGGACTAGTTGTTGTTT+TGG | - | chr1_4:15159529-15159548 | None:intergenic | 35.0% |
| !! | TGATCAAGCTCTGAATTGTT+TGG | - | chr1_4:15159546-15159565 | None:intergenic | 35.0% |
| !!! | TACATAGGAAGCATTTTGCA+TGG | + | chr1_4:15160709-15160728 | Msa0152480:intron | 35.0% |
| TATATTCAACTGCAGGAACT+TGG | + | chr1_4:15160800-15160819 | Msa0152480:CDS | 35.0% | |
| GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_4:15158842-15158861 | Msa0152480:CDS | 40.0% | |
| CCAATGCTTCAAACAAAGGA+TGG | - | chr1_4:15158929-15158948 | None:intergenic | 40.0% | |
| ! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_4:15158926-15158945 | Msa0152480:CDS | 40.0% |
| ! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_4:15159121-15159140 | Msa0152480:intron | 40.0% |
| TATTTCTTAGGTCGGATCTG+AGG | + | chr1_4:15159446-15159465 | Msa0152480:intron | 40.0% | |
| TTCAGAGCTTGATCACTTCA+TGG | + | chr1_4:15159551-15159570 | Msa0152480:CDS | 40.0% | |
| !! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_4:15160130-15160149 | None:intergenic | 40.0% |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15160143-15160162 | None:intergenic | 40.0% | |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15160143-15160162 | None:intergenic | 40.0% | |
| GTTCATCAATCACGTCTTTG+AGG | - | chr1_4:15160745-15160764 | None:intergenic | 40.0% | |
| TGCTACGTATATTCAACTGC+AGG | + | chr1_4:15160793-15160812 | Msa0152480:CDS | 40.0% | |
| GGAGGGTAAAGAAATTGGAA+AGG | + | chr1_4:15158842-15158861 | Msa0152480:CDS | 40.0% | |
| CCAATGCTTCAAACAAAGGA+TGG | - | chr1_4:15158929-15158948 | None:intergenic | 40.0% | |
| ! | CCATCCTTTGTTTGAAGCAT+TGG | + | chr1_4:15158926-15158945 | Msa0152480:CDS | 40.0% |
| ! | GGAAAGATAGTTTAGGACCA+CGG | + | chr1_4:15159121-15159140 | Msa0152480:intron | 40.0% |
| TATTTCTTAGGTCGGATCTG+AGG | + | chr1_4:15159446-15159465 | Msa0152480:intron | 40.0% | |
| TTCAGAGCTTGATCACTTCA+TGG | + | chr1_4:15159551-15159570 | Msa0152480:CDS | 40.0% | |
| !! | GTACGTATGGTTTTGCATGT+GGG | - | chr1_4:15160130-15160149 | None:intergenic | 40.0% |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15160143-15160162 | None:intergenic | 40.0% | |
| AATACGTTGTGACGTACGTA+TGG | - | chr1_4:15160143-15160162 | None:intergenic | 40.0% | |
| GTTCATCAATCACGTCTTTG+AGG | - | chr1_4:15160745-15160764 | None:intergenic | 40.0% | |
| TGCTACGTATATTCAACTGC+AGG | + | chr1_4:15160793-15160812 | Msa0152480:CDS | 40.0% | |
| ! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_4:15158858-15158877 | Msa0152480:CDS | 45.0% |
| !! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_4:15160123-15160142 | None:intergenic | 45.0% |
| !! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_4:15160124-15160143 | None:intergenic | 45.0% |
| !! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_4:15160131-15160150 | None:intergenic | 45.0% |
| ! | GGAAAGGGAAGTGATGATGT+AGG | + | chr1_4:15158858-15158877 | Msa0152480:CDS | 45.0% |
| !! | TGGTTTTGCATGTGGGTTGA+GGG | - | chr1_4:15160123-15160142 | None:intergenic | 45.0% |
| !! | ATGGTTTTGCATGTGGGTTG+AGG | - | chr1_4:15160124-15160143 | None:intergenic | 45.0% |
| !! | CGTACGTATGGTTTTGCATG+TGG | - | chr1_4:15160131-15160150 | None:intergenic | 45.0% |
| TGTATTCCTCATGGTGACCG+TGG | - | chr1_4:15159141-15159160 | None:intergenic | 50.0% | |
| ! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_4:15160118-15160137 | None:intergenic | 50.0% |
| ! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_4:15160364-15160383 | None:intergenic | 50.0% |
| ! | CAACTGCAGGAACTTGGTGA+AGG | + | chr1_4:15160806-15160825 | Msa0152480:CDS | 50.0% |
| TGTATTCCTCATGGTGACCG+TGG | - | chr1_4:15159141-15159160 | None:intergenic | 50.0% | |
| ! | TTGCATGTGGGTTGAGGGTT+CGG | - | chr1_4:15160118-15160137 | None:intergenic | 50.0% |
| ! | GACGTACGTATGGTTCTGCT+AGG | - | chr1_4:15160364-15160383 | None:intergenic | 50.0% |
| ! | CAACTGCAGGAACTTGGTGA+AGG | + | chr1_4:15160806-15160825 | Msa0152480:CDS | 50.0% |
| TTAGGACCACGGTCACCATG+AGG | + | chr1_4:15159132-15159151 | Msa0152480:intron | 55.0% | |
| TTAGGACCACGGTCACCATG+AGG | + | chr1_4:15159132-15159151 | Msa0152480:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15158840 | 15160838 | 15158840 | ID=Msa0152480;Name=Msa0152480 |
| chr1_4 | mRNA | 15158840 | 15160838 | 15158840 | ID=Msa0152480-mRNA-1;Parent=Msa0152480;Name=Msa0152480-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|124 |
| chr1_4 | exon | 15158840 | 15158974 | 15158840 | ID=Msa0152480-mRNA-1:exon:5956;Parent=Msa0152480-mRNA-1 |
| chr1_4 | exon | 15159456 | 15159572 | 15159456 | ID=Msa0152480-mRNA-1:exon:5957;Parent=Msa0152480-mRNA-1 |
| chr1_4 | exon | 15160716 | 15160838 | 15160716 | ID=Msa0152480-mRNA-1:exon:5958;Parent=Msa0152480-mRNA-1 |
| chr1_4 | CDS | 15158840 | 15158974 | 15158840 | ID=Msa0152480-mRNA-1:cds;Parent=Msa0152480-mRNA-1 |
| chr1_4 | CDS | 15159456 | 15159572 | 15159456 | ID=Msa0152480-mRNA-1:cds;Parent=Msa0152480-mRNA-1 |
| chr1_4 | CDS | 15160716 | 15160838 | 15160716 | ID=Msa0152480-mRNA-1:cds;Parent=Msa0152480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
