AlfalfaGEDB | Msa0967210

M. sativa cultivar zhongmu-4 / Msa0967210

KEGG: K20562
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967210	XP_013453030.1	74.349	499	128	0	41	539	1	499	0.0	791

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967210	sp\|H2DH18\|C7A12_PANGI	54.334	473	208	3	68	539	28	493	0.0	552

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967210	A0A072UD95	74.349	499	128	0	41	539	1	499	0.0	791

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011010	Msa0967210	0.813606	2.351162e-51	-8.615850e-47
Msa0011040	Msa0967210	0.827296	1.691945e-54	-8.615850e-47
Msa0013270	Msa0967210	0.825392	4.805742e-54	-8.615850e-47
Msa0014590	Msa0967210	0.805632	1.215210e-49	-8.615850e-47
Msa0025700	Msa0967210	0.803590	3.242219e-49	-8.615850e-47
Msa0045810	Msa0967210	0.806787	6.943192e-50	-8.615850e-47
Msa0046200	Msa0967210	0.804127	2.507746e-49	-8.615850e-47
Msa0048380	Msa0967210	0.817063	4.003784e-52	-8.615850e-47
Msa0062190	Msa0967210	0.806963	6.372783e-50	-8.615850e-47
Msa0063540	Msa0967210	0.832674	8.260196e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967210	MtrunA17_Chr6g0484811	74.349	499	128	0	41	539	1	499	0.0	791
Msa0967210	MtrunA17_Chr6g0484841	59.880	501	196	2	41	539	1	498	0.0	617
Msa0967210	MtrunA17_Chr8g0390881	54.949	495	220	3	47	539	5	498	0.0	571
Msa0967210	MtrunA17_Chr5g0430081	54.059	505	225	5	41	542	1	501	0.0	550
Msa0967210	MtrunA17_Chr5g0430101	54.747	495	216	4	51	542	11	500	0.0	549
Msa0967210	MtrunA17_Chr5g0430091	54.473	503	221	4	46	542	3	503	0.0	548
Msa0967210	MtrunA17_Chr5g0430131	52.684	503	229	4	46	542	3	502	0.0	534
Msa0967210	MtrunA17_Chr5g0430031	51.919	495	231	5	51	542	13	503	0.0	528
Msa0967210	MtrunA17_Chr5g0430111	53.630	427	192	4	46	468	3	427	1.23e-160	467
Msa0967210	MtrunA17_Chr8g0382901	46.573	496	241	8	45	535	468	944	4.36e-155	471

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967210	AT3G48310.1	37.908	459	270	5	71	526	24	470	1.52e-115	354
Msa0967210	AT3G48280.1	36.439	483	295	5	51	532	4	475	8.03e-115	352
Msa0967210	AT5G07990.1	38.211	492	289	5	52	535	8	492	9.16e-115	353
Msa0967210	AT3G26300.1	37.190	484	282	8	51	526	9	478	1.04e-111	345
Msa0967210	AT3G48320.1	38.574	477	272	8	53	526	12	470	7.41e-110	340
Msa0967210	AT3G48270.1	37.908	459	272	5	75	532	29	475	2.44e-109	338
Msa0967210	AT5G57260.1	36.008	486	286	9	66	539	22	494	2.00e-108	336
Msa0967210	AT3G48290.1	36.853	464	278	5	74	534	28	479	1.23e-107	334
Msa0967210	AT4G36220.1	39.355	465	261	9	85	535	48	505	2.04e-107	334
Msa0967210	AT3G48300.1	37.908	459	266	7	71	526	21	463	8.11e-107	332

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Find 132 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGGTTGGAAGGAAT+AGG	0.545409	6_3:+96550720	Msa0967210:CDS
AAACACTATCATGGGTCTTG+AGG	0.509745	6_3:-96549252	None:intergenic
AAATTTGCCTTATTTGACTA+TGG	0.322272	6_3:+96550766	Msa0967210:CDS
AACATACCTGAAGATCAAAT+GGG	0.501775	6_3:-96549654	None:intergenic
AACTACTGTGAAGTTTGTTC+TGG	0.294835	6_3:+96551069	Msa0967210:CDS
AACTCGTGCACTGCTTCAAT+TGG	0.332493	6_3:+96551095	Msa0967210:CDS
AAGATCAAAGAAAACGATGA+AGG	0.546969	6_3:+96550412	Msa0967210:CDS
AATATAACAAAGATCAATTC+AGG	0.288450	6_3:-96548998	None:intergenic
AATGATAATGGGCCGGAGCA+AGG	0.560566	6_3:+96549543	Msa0967210:CDS
ACAGCGGTGGAGAGAAAACT+AGG	0.507073	6_3:-96551608	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAATGGCATCACAAAAA+TGG	+	chr6_3:96549052-96549071	Msa0967210:CDS	30.0%
ATGTGAAGGTTACCAATTAT+TGG	-	chr6_3:96549109-96549128	None:intergenic	30.0%
CAATCCCTTTCTCAAAAATA+TGG	+	chr6_3:96549157-96549176	Msa0967210:CDS	30.0%
ACTAGCAAAAACACTATCAT+GGG	-	chr6_3:96549263-96549282	None:intergenic	30.0%
TACTAGCAAAAACACTATCA+TGG	-	chr6_3:96549264-96549283	None:intergenic	30.0%
GTTTCAGATTATGTCACATA+TGG	+	chr6_3:96549298-96549317	Msa0967210:CDS	30.0%
GAAATCATCTACATTACATG+AGG	+	chr6_3:96549468-96549487	Msa0967210:CDS	30.0%
AACATACCTGAAGATCAAAT+GGG	-	chr6_3:96549657-96549676	None:intergenic	30.0%
TAACATACCTGAAGATCAAA+TGG	-	chr6_3:96549658-96549677	None:intergenic	30.0%
AAGAGAGAGATAGCTATTAA+TGG	+	chr6_3:96550096-96550115	Msa0967210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	96548854	96551898	96548854	ID=Msa0967210;Name=Msa0967210
chr6_3	mRNA	96548854	96551898	96548854	ID=Msa0967210-mRNA-1;Parent=Msa0967210;Name=Msa0967210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.5\|0\|0.66\|1\|1\|3\|0\|635
chr6_3	exon	96548854	96549669	96548854	ID=Msa0967210-mRNA-1:exon:17890;Parent=Msa0967210-mRNA-1
chr6_3	exon	96550401	96551187	96550401	ID=Msa0967210-mRNA-1:exon:17891;Parent=Msa0967210-mRNA-1
chr6_3	exon	96551594	96551898	96551594	ID=Msa0967210-mRNA-1:exon:17892;Parent=Msa0967210-mRNA-1
chr6_3	CDS	96548854	96549669	96548854	ID=Msa0967210-mRNA-1:cds;Parent=Msa0967210-mRNA-1
chr6_3	CDS	96550401	96551187	96550401	ID=Msa0967210-mRNA-1:cds;Parent=Msa0967210-mRNA-1
chr6_3	CDS	96551594	96551898	96551594	ID=Msa0967210-mRNA-1:cds;Parent=Msa0967210-mRNA-1

Gene Sequence

>Msa0967210

ATGGGTAAAGAGATGCGCAACGGTGATCATATATGCTATATAAATACTAAAACTTGTCCTCCATTCTCCATCAAGCACAACATCCCAAAACCATTTCTATCTATTCTCTTTCAAGCAAACATGTTACCTCAAATATTAGCTATCCCTGAATTGATCTTTGTTATATTCATACTCATTCTATCAGCTACAATTTTTCACTCAAAATGGCATCACAAAAATGGTAGGAAAAATCCACCGGGTCCAAAACCATTGCCAATAATTGGTAACCTTCACATGATAGGGAAACTTCCACATCGTTCGCTTCAATCCCTTTCTCAAAAATATGGACCCATAATGTCCTTGAAGTTAGGACAAGTCCAAACCATTGTGGTTTCATCACCTGAAACCGCCGAACTATTCCTCAAGACCCATGATAGTGTTTTTGCTAGTAGGCCAAAAAATTTTGTTTCAGATTATGTCACATATGGTAGCAAGGGCCTAACTTTCACCGAGTATGGTGACAATTGGCGCAATATGAGGAAATTGTGTACCATGCAATTATTGCATGCTTCAAAAGTTGAGATGTTTGCTCCTTTGAGAAAGGAAGAGTTGGGGTTTTTGGTTAATTCACTAAGGAAATCATCTACATTACATGAGGTTGTTGATGTCCACAAGGTTGTGGTTGATCTTATAGAGAATATTGGTCATAAAATGATAATGGGCCGGAGCAAGGATGATAGATTCAACATAAATGGGATTATTCACGAAGCAATGAATTTGATTGAAGTTTTTAATCTAGCTGACTTCGTGCCTTGGCTAGCCCCATTTGATCTTCAGGGAATAAAACGAAGATCAAAGAAAACGATGAAGGAGTTTGACGAACTGTTGGAGCACATAATCAAAGAGCATGAGAATCCACCGATTGGAGAACAAAGAGACCATCACGGAAAGAGCTTTTTGGACATATTGTTATCACTCATGAACCAACAAATGGAATCCCAAGAAGAAAATTATGTCATTGATAGAACAACCATCAAGGCTATTATAATAGACATGATTTTAGCAGCAACAGAATCATCTATAGCTGTAATTGAGTGGGCACTCTCAGAACTCATAAAGCATCCTAAGACAATGAAGAGACTTCAAGATGAGCACGAAAATGTGGTTGGAAGGAATAGGCAAGTTGAAGAGACCGACTTGGAAAATTTGCCTTATTTGACTATGGTTGTGAAAGAGACCTTAAGGTTGTACCCTGTTGGACCTTTGTTAGCACCTCATGAGTGTCTTCAAGATGTTGTTGTCGATGGTTTTTATATAAAGAAAAAGTCAATAGTTTTAATAAATGCATGGACAATAGGGAGAGATACTAAGGTTTGGTCTGATAATGCTGAGATGTTTTGTCCAGAGAGATTTGAAGATAGTAATGTAGATCTTCGTGGACATGATTTTCAACTTTTACCATTTGGATCAGGTCGAAGAGGTTGTCCTGGAATGCGGATGGGTTTAACTACTGTGAAGTTTGTTCTGGCTCAACTCGTGCACTGCTTCAATTGGGATCTTCCTGATGGTATGTCCCTTGATGAGTTAGACATGTCTGAAAAGTTTGAATTCGCCATGCCAAAAAGCAGAGATTTCCTCCCTAGTTTTCTCTCCACCGCTGTGCGGGTTCAACCCCCTATCGCACTTGTGACTGCACCTGGGCCAATTTCTTTTTCTCAGGCTTTAGCAGCATCTCCTCAGCTTTCTTCGCATGACAATCTACACCAGCCTTCCATCCGAGGTGAGGCAGTTAGCATCAAAATTTCATCGGAGACTTATGAAAAAGGTATTGAAGTTTGCAAGAGAAACTTGCGTGGCAGATTTGTGTTGAATAAGGGCGATAAACCGTACACAACAAAGGATATCCAACTGAAACTTCAGACACAATGA

Protein sequence

>Msa0967210

MGKEMRNGDHICYINTKTCPPFSIKHNIPKPFLSILFQANMLPQILAIPELIFVIFILILSATIFHSKWHHKNGRKNPPGPKPLPIIGNLHMIGKLPHRSLQSLSQKYGPIMSLKLGQVQTIVVSSPETAELFLKTHDSVFASRPKNFVSDYVTYGSKGLTFTEYGDNWRNMRKLCTMQLLHASKVEMFAPLRKEELGFLVNSLRKSSTLHEVVDVHKVVVDLIENIGHKMIMGRSKDDRFNINGIIHEAMNLIEVFNLADFVPWLAPFDLQGIKRRSKKTMKEFDELLEHIIKEHENPPIGEQRDHHGKSFLDILLSLMNQQMESQEENYVIDRTTIKAIIIDMILAATESSIAVIEWALSELIKHPKTMKRLQDEHENVVGRNRQVEETDLENLPYLTMVVKETLRLYPVGPLLAPHECLQDVVVDGFYIKKKSIVLINAWTIGRDTKVWSDNAEMFCPERFEDSNVDLRGHDFQLLPFGSGRRGCPGMRMGLTTVKFVLAQLVHCFNWDLPDGMSLDELDMSEKFEFAMPKSRDFLPSFLSTAVRVQPPIALVTAPGPISFSQALAASPQLSSHDNLHQPSIRGEAVSIKISSETYEKGIEVCKRNLRGRFVLNKGDKPYTTKDIQLKLQTQ*