AlfalfaGEDB | Msa0977340

M. sativa cultivar zhongmu-4 / Msa0977340

KEGG: K00432
GO: -
PFAM: PF12738.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977340	XP_013451238.1	95.699	465	18	1	1	463	1	465	0.0	910

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977340	sp\|O04251\|Y4211_ARATH	37.079	89	53	3	4	90	112	199	3.34e-13	75.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977340	A0A072U6H8	95.699	465	18	1	1	463	1	465	0.0	910

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030070	Msa0977340	0.813939	1.985762e-51	-8.615850e-47
Msa0050150	Msa0977340	0.833858	4.189545e-56	-8.615850e-47
Msa0078130	Msa0977340	0.802978	4.340272e-49	-8.615850e-47
Msa0090440	Msa0977340	0.802335	5.891779e-49	-8.615850e-47
Msa0100600	Msa0977340	0.808896	2.472087e-50	-8.615850e-47
Msa0125590	Msa0977340	0.827718	1.340454e-54	-8.615850e-47
Msa0153210	Msa0977340	0.800923	1.147359e-48	-8.615850e-47
Msa0194630	Msa0977340	0.817144	3.839344e-52	-8.615850e-47
Msa0204970	Msa0977340	0.823966	1.042044e-53	-8.615850e-47
Msa0249870	Msa0977340	0.817456	3.266735e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977340	MtrunA17_Chr6g0456701	95.680	463	19	1	1	463	1	462	0.0	907
Msa0977340	MtrunA17_Chr4g0069381	55.128	78	33	1	167	244	5	80	5.71e-19	81.3
Msa0977340	MtrunA17_Chr1g0194861	39.326	89	51	3	4	90	111	198	1.25e-14	76.6
Msa0977340	MtrunA17_Chr7g0225941	65.909	44	15	0	1	44	21	64	3.70e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977340	AT1G67180.2	39.583	480	246	11	1	463	1	453	4.84e-103	315
Msa0977340	AT1G67180.1	39.583	480	246	11	1	463	1	453	4.84e-103	315
Msa0977340	AT1G67180.6	39.518	415	205	12	1	399	1	385	1.57e-80	255
Msa0977340	AT1G67180.5	32.997	397	222	12	84	463	2	371	2.18e-54	186
Msa0977340	AT1G67180.7	32.997	397	222	12	84	463	2	371	2.18e-54	186
Msa0977340	AT1G67180.4	31.024	332	183	12	84	399	2	303	2.10e-32	125
Msa0977340	AT1G67180.3	31.024	332	183	12	84	399	2	303	2.10e-32	125
Msa0977340	AT4G02110.1	37.079	89	53	3	4	90	112	199	3.39e-14	75.9
Msa0977340	AT4G02110.2	51.852	54	24	2	38	90	18	70	9.29e-12	68.2

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Find 126 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATCACCTTTGCA+AGG	0.615926	6_4:-12042611	None:intergenic
AAAATACTGACTTCAGTTCC+GGG	0.458436	6_4:+12043310	Msa0977340:CDS
AAAATGCTTACTAATATAAG+CGG	0.616285	6_4:-12045974	None:intergenic
AAAATTCTCCGATGGTGATG+TGG	0.665179	6_4:+12044236	Msa0977340:CDS
AAATACTGACTTCAGTTCCG+GGG	0.690610	6_4:+12043311	Msa0977340:CDS
AAATGATGGTGAAGTGGCGA+TGG	0.603502	6_4:+12043912	Msa0977340:CDS
AACAGAAATTCCACAGACCC+CGG	0.570394	6_4:-12043328	None:intergenic
AAGAATTCATTCTTATTGCA+TGG	0.472776	6_4:+12045890	Msa0977340:CDS
AAGACTGTATAAAGGAAGGA+AGG	0.641299	6_4:+12042566	Msa0977340:CDS
AAGATTCTTATACCTTGCAA+AGG	0.588139	6_4:+12042599	Msa0977340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATGTTGTTAGTGATGAAT+TGG	+	chr6_4:12041892-12041911	Msa0977340:intron	30.0%
TTGTTAAATAGAGGTTACAG+TGG	-	chr6_4:12042156-12042175	None:intergenic	30.0%
ATCCACACAAACGTAATAAA+TGG	+	chr6_4:12042331-12042350	Msa0977340:intron	30.0%
TTCCATTTATTACGTTTGTG+TGG	-	chr6_4:12042336-12042355	None:intergenic	30.0%
AATATCGTGTTTCAATGTTC+AGG	+	chr6_4:12042465-12042484	Msa0977340:intron	30.0%
AAGATTCTTATACCTTGCAA+AGG	+	chr6_4:12042599-12042618	Msa0977340:CDS	30.0%
AAAACAAAATCACCTTTGCA+AGG	-	chr6_4:12042614-12042633	None:intergenic	30.0%
GTGTGAATTTAAATGACTGT+TGG	+	chr6_4:12042760-12042779	Msa0977340:intron	30.0%
AGACAGCAGATTATAACAAA+GGG	-	chr6_4:12043126-12043145	None:intergenic	30.0%
TAGACAGCAGATTATAACAA+AGG	-	chr6_4:12043127-12043146	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	12041635	12046376	12041635	ID=Msa0977340;Name=Msa0977340
chr6_4	mRNA	12041635	12046376	12041635	ID=Msa0977340-mRNA-1;Parent=Msa0977340;Name=Msa0977340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18\|1\|1\|1\|1\|1\|6\|390\|463
chr6_4	exon	12041635	12041775	12041635	ID=Msa0977340-mRNA-1:exon:4242;Parent=Msa0977340-mRNA-1
chr6_4	exon	12042487	12042620	12042487	ID=Msa0977340-mRNA-1:exon:4243;Parent=Msa0977340-mRNA-1
chr6_4	exon	12043197	12043377	12043197	ID=Msa0977340-mRNA-1:exon:4244;Parent=Msa0977340-mRNA-1
chr6_4	exon	12043799	12044398	12043799	ID=Msa0977340-mRNA-1:exon:4245;Parent=Msa0977340-mRNA-1
chr6_4	exon	12045254	12045433	12045254	ID=Msa0977340-mRNA-1:exon:4246;Parent=Msa0977340-mRNA-1
chr6_4	exon	12045813	12046376	12045813	ID=Msa0977340-mRNA-1:exon:4247;Parent=Msa0977340-mRNA-1
chr6_4	five_prime_UTR	12041635	12041652	12041635	ID=Msa0977340-mRNA-1:five_prime_utr;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12041653	12041775	12041653	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12042487	12042620	12042487	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12043197	12043377	12043197	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12043799	12044398	12043799	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12045254	12045433	12045254	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	CDS	12045813	12045986	12045813	ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1
chr6_4	three_prime_UTR	12045987	12046376	12045987	ID=Msa0977340-mRNA-1:three_prime_utr;Parent=Msa0977340-mRNA-1

Gene Sequence

>Msa0977340

ATGGATCGAGTGGTTGCAACAGTGAGTGGTTACCGTGAACTCGAGCGATTCAATCTTATTAAGCTCATTTCGCGTTCCGGTGCCAGTTACGTTGGAGATATGTCGAAGTCAATTACTCATCTGGTGTGTTGGAAGTTTGAAGGAAAGAAGTATGACATTGCCCGTAAATTAAAAATATATGTAGTCAACCACCGTTGGGTTGAAGACTGTATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATACCTTGCAAAGTGGACAAGAAGTAGGGCCATTATTAATGGAAGTTCCAGTCAATGTTCAAGCAAGTACCTTATCCAAGAATAAAGTGGTCAGAGGAAGATCATGTGATATTGTGTCCGAAAGGCAAAATACTGACTTCAGTTCCGGGGTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTTTACTGAAACAGCATGGGGAGTCAAGTTCATATCCACCTATACTGTCAAGGAAAGGTAAAAGAAATAGAGGAAATGATGTTAGTACCTCGGCTAGACATTCTCGTAAAGGAAGAAGGGTTGTGAGAAATGATGGTGAAGTGGCGATGGCCCCTATAATTTTGGATTTAAGCACAGACGACCAGCTTTGCGAAATAGATAGGCAAGACACCGAAGCTGCAGCTACATCTAGCCTTTCTCGCCATGTCAATATTGACAATATTCAAGAAAATAGTGAAGGACTTGATGCTGGACTATCTAGTCAAATTAGAACTAACAATGGAAGTTCAGATGGCATTGAGCAGAGCAGAGATTCAAATCATATATCTACTCTCCGAAATTCAACTTTGTTTATAGAAGATCCCCTTCCTCTGACACAAACATCAGTAGATTTATGTTCCAGTGCTGCTGAAAAATTCTCCGATGGTGATGTGGTTGATAATTTTGATGACTCCCCTACTTCAAATGAGTTGTCATGTGTCATATGTTGGACAGATTTCAGTTCAACAAGGGGGATTTTGGAGTGCGGACATCGTTTTTGTTTTTCATGCATCCAGGGTTGGGTTGATCGCAGAAAAGCAATGGGGAAAGTTTCAAACTGTCCTTTGTGCAAGGCCAGTATTATGAAGATCATGAAAGTTGAGCATGCAGACACCACTGATCAAAAAGCATACTCCCAGACAATTCCATGTGATTACACTACCTCAGATTTTTGTATCCCAATTGATCAAGAATTTCCAGACAATAGCTTAGAGTCCTCAGGTGCTTGTGTAATTTGCGGTGGTCGGGAACCTGAAGATCTACTTGAGAATTGTGATGTTTGTCGATGTCGAAGAATTCATTCTTATTGCATGGACCCTCCATTGCGACCATGGACATGCACTTCTTGCAAGGAACTTCGAATGCTTTATCGTAACCGCTTATATTAG

Protein sequence

>Msa0977340

MDRVVATVSGYRELERFNLIKLISRSGASYVGDMSKSITHLVCWKFEGKKYDIARKLKIYVVNHRWVEDCIKEGRRVPEDSYTLQSGQEVGPLLMEVPVNVQASTLSKNKVVRGRSCDIVSERQNTDFSSGVCGISVLEDSSLLKQHGESSSYPPILSRKGKRNRGNDVSTSARHSRKGRRVVRNDGEVAMAPIILDLSTDDQLCEIDRQDTEAAATSSLSRHVNIDNIQENSEGLDAGLSSQIRTNNGSSDGIEQSRDSNHISTLRNSTLFIEDPLPLTQTSVDLCSSAAEKFSDGDVVDNFDDSPTSNELSCVICWTDFSSTRGILECGHRFCFSCIQGWVDRRKAMGKVSNCPLCKASIMKIMKVEHADTTDQKAYSQTIPCDYTTSDFCIPIDQEFPDNSLESSGACVICGGREPEDLLENCDVCRCRRIHSYCMDPPLRPWTCTSCKELRMLYRNRLY*