Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977340 | XP_013451238.1 | 95.699 | 465 | 18 | 1 | 1 | 463 | 1 | 465 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977340 | sp|O04251|Y4211_ARATH | 37.079 | 89 | 53 | 3 | 4 | 90 | 112 | 199 | 3.34e-13 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977340 | A0A072U6H8 | 95.699 | 465 | 18 | 1 | 1 | 463 | 1 | 465 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0977340 | 0.813939 | 1.985762e-51 | -8.615850e-47 |
| Msa0050150 | Msa0977340 | 0.833858 | 4.189545e-56 | -8.615850e-47 |
| Msa0078130 | Msa0977340 | 0.802978 | 4.340272e-49 | -8.615850e-47 |
| Msa0090440 | Msa0977340 | 0.802335 | 5.891779e-49 | -8.615850e-47 |
| Msa0100600 | Msa0977340 | 0.808896 | 2.472087e-50 | -8.615850e-47 |
| Msa0607800 | Msa0977340 | 0.805811 | 1.114829e-49 | -8.615850e-47 |
| Msa0615630 | Msa0977340 | 0.808578 | 2.890473e-50 | -8.615850e-47 |
| Msa0618990 | Msa0977340 | 0.802297 | 5.998464e-49 | -8.615850e-47 |
| Msa0620500 | Msa0977340 | 0.820361 | 7.142623e-53 | -8.615850e-47 |
| Msa0620510 | Msa0977340 | 0.837158 | 6.128763e-57 | -8.615850e-47 |
| Msa0625620 | Msa0977340 | 0.822409 | 2.405783e-53 | -8.615850e-47 |
| Msa0640800 | Msa0977340 | 0.803550 | 3.303920e-49 | -8.615850e-47 |
| Msa0647440 | Msa0977340 | 0.809059 | 2.281830e-50 | -8.615850e-47 |
| Msa0648040 | Msa0977340 | 0.808186 | 3.504135e-50 | -8.615850e-47 |
| Msa0657210 | Msa0977340 | 0.801648 | 8.152882e-49 | -8.615850e-47 |
| Msa0690740 | Msa0977340 | 0.818189 | 2.231633e-52 | -8.615850e-47 |
| Msa0698730 | Msa0977340 | 0.806026 | 1.004701e-49 | -8.615850e-47 |
| Msa0701250 | Msa0977340 | 0.807325 | 5.342380e-50 | -8.615850e-47 |
| Msa0707260 | Msa0977340 | 0.853186 | 2.822449e-61 | -8.615850e-47 |
| Msa0717900 | Msa0977340 | 0.826826 | 2.192280e-54 | -8.615850e-47 |
| Msa0720280 | Msa0977340 | 0.811267 | 7.626076e-51 | -8.615850e-47 |
| Msa0803140 | Msa0977340 | 0.812327 | 4.483752e-51 | -8.615850e-47 |
| Msa0816080 | Msa0977340 | 0.821782 | 3.362952e-53 | -8.615850e-47 |
| Msa0837680 | Msa0977340 | 0.805619 | 1.223392e-49 | -8.615850e-47 |
| Msa0841500 | Msa0977340 | 0.803144 | 4.010427e-49 | -8.615850e-47 |
| Msa0125590 | Msa0977340 | 0.827718 | 1.340454e-54 | -8.615850e-47 |
| Msa0153210 | Msa0977340 | 0.800923 | 1.147359e-48 | -8.615850e-47 |
| Msa0194630 | Msa0977340 | 0.817144 | 3.839344e-52 | -8.615850e-47 |
| Msa0204970 | Msa0977340 | 0.823966 | 1.042044e-53 | -8.615850e-47 |
| Msa0373170 | Msa0977340 | 0.835954 | 1.241992e-56 | -8.615850e-47 |
| Msa0373590 | Msa0977340 | 0.814795 | 1.284262e-51 | -8.615850e-47 |
| Msa0382230 | Msa0977340 | 0.831750 | 1.398608e-55 | -8.615850e-47 |
| Msa0404770 | Msa0977340 | 0.830085 | 3.582172e-55 | -8.615850e-47 |
| Msa0421750 | Msa0977340 | 0.829144 | 6.067543e-55 | -8.615850e-47 |
| Msa0433630 | Msa0977340 | 0.819345 | 1.219630e-52 | -8.615850e-47 |
| Msa0433760 | Msa0977340 | 0.807001 | 6.255215e-50 | -8.615850e-47 |
| Msa0467690 | Msa0977340 | 0.836887 | 7.191404e-57 | -8.615850e-47 |
| Msa0468620 | Msa0977340 | 0.804749 | 1.860107e-49 | -8.615850e-47 |
| Msa0468700 | Msa0977340 | 0.823516 | 1.328260e-53 | -8.615850e-47 |
| Msa0477630 | Msa0977340 | 0.805109 | 1.564508e-49 | -8.615850e-47 |
| Msa0249870 | Msa0977340 | 0.817456 | 3.266735e-52 | -8.615850e-47 |
| Msa0281540 | Msa0977340 | 0.829903 | 3.966039e-55 | -8.615850e-47 |
| Msa0320580 | Msa0977340 | 0.819175 | 1.333406e-52 | -8.615850e-47 |
| Msa0344110 | Msa0977340 | 0.822232 | 2.643892e-53 | -8.615850e-47 |
| Msa0506540 | Msa0977340 | 0.809781 | 1.596850e-50 | -8.615850e-47 |
| Msa0513640 | Msa0977340 | 0.815027 | 1.140823e-51 | -8.615850e-47 |
| Msa0514020 | Msa0977340 | 0.842839 | 2.023222e-58 | -8.615850e-47 |
| Msa0514500 | Msa0977340 | 0.807353 | 5.267816e-50 | -8.615850e-47 |
| Msa0514580 | Msa0977340 | 0.831322 | 1.782471e-55 | -8.615850e-47 |
| Msa0520680 | Msa0977340 | 0.824789 | 6.673961e-54 | -8.615850e-47 |
| Msa0521510 | Msa0977340 | 0.820045 | 8.439036e-53 | -8.615850e-47 |
| Msa0521680 | Msa0977340 | 0.802234 | 6.180058e-49 | -8.615850e-47 |
| Msa0527850 | Msa0977340 | 0.803403 | 3.544046e-49 | -8.615850e-47 |
| Msa0541740 | Msa0977340 | 0.807397 | 5.158045e-50 | -8.615850e-47 |
| Msa0550590 | Msa0977340 | 0.802363 | 5.812234e-49 | -8.615850e-47 |
| Msa0561560 | Msa0977340 | 0.816823 | 4.532457e-52 | -8.615850e-47 |
| Msa0572830 | Msa0977340 | 0.861912 | 7.348803e-64 | -8.615850e-47 |
| Msa0586200 | Msa0977340 | 0.801551 | 8.536465e-49 | -8.615850e-47 |
| Msa0851300 | Msa0977340 | 0.808527 | 2.965012e-50 | -8.615850e-47 |
| Msa0861440 | Msa0977340 | 0.816722 | 4.776938e-52 | -8.615850e-47 |
| Msa0900090 | Msa0977340 | 0.823121 | 1.642195e-53 | -8.615850e-47 |
| Msa0926310 | Msa0977340 | 0.838623 | 2.576871e-57 | -8.615850e-47 |
| Msa0977340 | Msa1000780 | 0.849449 | 3.210793e-60 | -8.615850e-47 |
| Msa0977340 | Msa1008670 | 0.804771 | 1.840500e-49 | -8.615850e-47 |
| Msa0977340 | Msa1076020 | 0.830034 | 3.684976e-55 | -8.615850e-47 |
| Msa0977340 | Msa1106220 | 0.802487 | 5.479989e-49 | -8.615850e-47 |
| Msa0977340 | Msa1127280 | 0.805587 | 1.241957e-49 | -8.615850e-47 |
| Msa0977340 | Msa1163180 | 0.811117 | 8.217522e-51 | -8.615850e-47 |
| Msa0977340 | Msa1165480 | 0.807430 | 5.075237e-50 | -8.615850e-47 |
| Msa0977340 | Msa1215980 | 0.820029 | 8.513179e-53 | -8.615850e-47 |
| Msa0977340 | Msa1215990 | 0.837358 | 5.447777e-57 | -8.615850e-47 |
| Msa0977340 | Msa1267930 | 0.806032 | 1.001391e-49 | -8.615850e-47 |
| Msa0977340 | Msa1294790 | 0.803600 | 3.225892e-49 | -8.615850e-47 |
| Msa0977340 | Msa1301820 | 0.807371 | 5.221751e-50 | -8.615850e-47 |
| Msa0977340 | Msa1305780 | 0.801791 | 7.622955e-49 | -8.615850e-47 |
| Msa0977340 | Msa1332950 | 0.810881 | 9.247687e-51 | -8.615850e-47 |
| Msa0977340 | Msa1339230 | 0.804324 | 2.281604e-49 | -8.615850e-47 |
| Msa0977340 | Msa1381470 | 0.807700 | 4.446827e-50 | -8.615850e-47 |
| Msa0977340 | Msa1393560 | 0.858594 | 7.399183e-63 | -8.615850e-47 |
| Msa0977340 | Msa1399190 | 0.847804 | 9.171861e-60 | -8.615850e-47 |
| Msa0977340 | Msa1426320 | 0.850983 | 1.192939e-60 | -8.615850e-47 |
| Msa0977340 | Msa1435100 | 0.826693 | 2.357929e-54 | -8.615850e-47 |
| Msa0977340 | Msa1439730 | 0.828513 | 8.620857e-55 | -8.615850e-47 |
| Msa0977340 | Msa1442260 | 0.808542 | 2.943021e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977340 | MtrunA17_Chr6g0456701 | 95.680 | 463 | 19 | 1 | 1 | 463 | 1 | 462 | 0.0 | 907 |
| Msa0977340 | MtrunA17_Chr4g0069381 | 55.128 | 78 | 33 | 1 | 167 | 244 | 5 | 80 | 5.71e-19 | 81.3 |
| Msa0977340 | MtrunA17_Chr1g0194861 | 39.326 | 89 | 51 | 3 | 4 | 90 | 111 | 198 | 1.25e-14 | 76.6 |
| Msa0977340 | MtrunA17_Chr7g0225941 | 65.909 | 44 | 15 | 0 | 1 | 44 | 21 | 64 | 3.70e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977340 | AT1G67180.2 | 39.583 | 480 | 246 | 11 | 1 | 463 | 1 | 453 | 4.84e-103 | 315 |
| Msa0977340 | AT1G67180.1 | 39.583 | 480 | 246 | 11 | 1 | 463 | 1 | 453 | 4.84e-103 | 315 |
| Msa0977340 | AT1G67180.6 | 39.518 | 415 | 205 | 12 | 1 | 399 | 1 | 385 | 1.57e-80 | 255 |
| Msa0977340 | AT1G67180.5 | 32.997 | 397 | 222 | 12 | 84 | 463 | 2 | 371 | 2.18e-54 | 186 |
| Msa0977340 | AT1G67180.7 | 32.997 | 397 | 222 | 12 | 84 | 463 | 2 | 371 | 2.18e-54 | 186 |
| Msa0977340 | AT1G67180.4 | 31.024 | 332 | 183 | 12 | 84 | 399 | 2 | 303 | 2.10e-32 | 125 |
| Msa0977340 | AT1G67180.3 | 31.024 | 332 | 183 | 12 | 84 | 399 | 2 | 303 | 2.10e-32 | 125 |
| Msa0977340 | AT4G02110.1 | 37.079 | 89 | 53 | 3 | 4 | 90 | 112 | 199 | 3.39e-14 | 75.9 |
| Msa0977340 | AT4G02110.2 | 51.852 | 54 | 24 | 2 | 38 | 90 | 18 | 70 | 9.29e-12 | 68.2 |
Find 126 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGATGGCCCCTATAATTT+TGG | 0.151110 | 6_4:+12043927 | Msa0977340:CDS |
| TCCTCTGACCACTTTATTCT+TGG | 0.198912 | 6_4:-12043259 | None:intergenic |
| TTTGATTTGGCTATCTGTTT+AGG | 0.247277 | 6_4:+12046187 | Msa0977340:three_prime_UTR |
| GTGCTTAAATCCAAAATTAT+AGG | 0.247700 | 6_4:-12043937 | None:intergenic |
| TGCAAGGTATAAGAATCTTC+TGG | 0.269284 | 6_4:-12042595 | None:intergenic |
| TGCTTAAATCCAAAATTATA+GGG | 0.275232 | 6_4:-12043936 | None:intergenic |
| TCTGGAAATTCTTGATCAAT+TGG | 0.294794 | 6_4:-12045398 | None:intergenic |
| ATTAAGCTCATTTCGCGTTC+CGG | 0.313964 | 6_4:+12041710 | Msa0977340:CDS |
| AGAAGTAGGGCCATTATTAA+TGG | 0.318080 | 6_4:+12043203 | Msa0977340:CDS |
| CTATAAACAAAGTTGAATTT+CGG | 0.329097 | 6_4:-12044158 | None:intergenic |
| ACTGGAACTTCCATTAATAA+TGG | 0.331482 | 6_4:-12043213 | None:intergenic |
| TTTCATGATCTTCATAATAC+TGG | 0.336831 | 6_4:-12045294 | None:intergenic |
| AGATTCTTCTTTACTGAAAC+AGG | 0.344144 | 6_4:+12043356 | Msa0977340:CDS |
| CGACATATCTCCAACGTAAC+TGG | 0.349272 | 6_4:-12041735 | None:intergenic |
| CAAAATACTGACTTCAGTTC+CGG | 0.356103 | 6_4:+12043309 | Msa0977340:CDS |
| CAATTCTCAAGTAGATCTTC+AGG | 0.358088 | 6_4:-12045849 | None:intergenic |
| CTATCTGTTTAGGATTAATC+TGG | 0.360321 | 6_4:+12046197 | Msa0977340:three_prime_UTR |
| TCTGTCGTTTCAATTTGATT+TGG | 0.362795 | 6_4:+12046174 | Msa0977340:three_prime_UTR |
| AGGGATCGTTTATGTATGTT+AGG | 0.369398 | 6_4:+12046306 | Msa0977340:three_prime_UTR |
| GGTCTGTGGAATTTCTGTTT+TGG | 0.374321 | 6_4:+12043332 | Msa0977340:CDS |
| ATTTCCAGACAATAGCTTAG+AGG | 0.377434 | 6_4:+12045412 | Msa0977340:CDS |
| CAATATTTATAGAAAGCAAT+GGG | 0.396864 | 6_4:+12045242 | Msa0977340:intron |
| GATTGAATCGCTCGAGTTCA+CGG | 0.397257 | 6_4:-12041685 | None:intergenic |
| CTGGAAATTCTTGATCAATT+GGG | 0.400835 | 6_4:-12045397 | None:intergenic |
| TGTAATCACATGGAATTGTC+TGG | 0.410081 | 6_4:-12045355 | None:intergenic |
| TTCGTTGTACTTGTGATTGT+GGG | 0.414378 | 6_4:+12046082 | Msa0977340:three_prime_UTR |
| GCCTATCTATTTCGCAAAGC+TGG | 0.414993 | 6_4:-12043966 | None:intergenic |
| TCATGGAATGCGCAAGTGTC+TGG | 0.416262 | 6_4:+12046019 | Msa0977340:three_prime_UTR |
| AGTGGAACATCACTAAATAA+AGG | 0.416861 | 6_4:+12046274 | Msa0977340:three_prime_UTR |
| GTCGAAGTCAATTACTCATC+TGG | 0.430392 | 6_4:+12041754 | Msa0977340:CDS |
| CATACCTCTAAGCTATTGTC+TGG | 0.432494 | 6_4:-12045416 | None:intergenic |
| TTACCTTTCCTTGACAGTAT+AGG | 0.438031 | 6_4:-12043823 | None:intergenic |
| CTAAATAAAGGCGACAATGC+AGG | 0.438089 | 6_4:+12046286 | Msa0977340:three_prime_UTR |
| GACCACTTTATTCTTGGATA+AGG | 0.439955 | 6_4:-12043253 | None:intergenic |
| CAATATTGACATGGCGAGAA+AGG | 0.455363 | 6_4:-12044017 | None:intergenic |
| GCTAGATGTAGCTGCAGCTT+CGG | 0.455457 | 6_4:-12043995 | None:intergenic |
| GTACTTGCTTGAACATTGAC+TGG | 0.455699 | 6_4:-12043231 | None:intergenic |
| AAAATACTGACTTCAGTTCC+GGG | 0.458436 | 6_4:+12043310 | Msa0977340:CDS |
| ACCAGCTTTGCGAAATAGAT+AGG | 0.461923 | 6_4:+12043965 | Msa0977340:CDS |
| GCAAGGTATAAGAATCTTCT+GGG | 0.467419 | 6_4:-12042594 | None:intergenic |
| TTGGGTTGAAGACTGTATAA+AGG | 0.468632 | 6_4:+12042558 | Msa0977340:CDS |
| GACATTCTCGTAAAGGAAGA+AGG | 0.471809 | 6_4:+12043881 | Msa0977340:CDS |
| AAGAATTCATTCTTATTGCA+TGG | 0.472776 | 6_4:+12045890 | Msa0977340:CDS |
| AGGAAAGGTAAAAGAAATAG+AGG | 0.477300 | 6_4:+12043835 | Msa0977340:CDS |
| TTGTGTAATTTGCGGTGGTC+GGG | 0.484418 | 6_4:+12045824 | Msa0977340:CDS |
| CTTGTGTAATTTGCGGTGGT+CGG | 0.486425 | 6_4:+12045823 | Msa0977340:CDS |
| ATCCGATTGAGCAGGTTGTA+AGG | 0.489009 | 6_4:+12041622 | None:intergenic |
| GTTCGTTGTACTTGTGATTG+TGG | 0.494109 | 6_4:+12046081 | Msa0977340:three_prime_UTR |
| CAGGTGTGTTGGAAGTTTGA+AGG | 0.496423 | 6_4:+12042484 | Msa0977340:intron |
| CTGATGTTTGTGTCAGAGGA+AGG | 0.500424 | 6_4:-12044188 | None:intergenic |
| ATCTCCAACGTAACTGGCAC+CGG | 0.507756 | 6_4:-12041729 | None:intergenic |
| CATGACAACTCATTTGAAGT+AGG | 0.507841 | 6_4:-12044279 | None:intergenic |
| TGGACCCTCCATTGCGACCA+TGG | 0.508167 | 6_4:+12045910 | Msa0977340:CDS |
| CATGTCCATGGTCGCAATGG+AGG | 0.508381 | 6_4:-12045915 | None:intergenic |
| AATAGTGAAGGACTTGATGC+TGG | 0.509801 | 6_4:+12044054 | Msa0977340:CDS |
| CCTTTCCTTGACAGTATAGG+TGG | 0.513769 | 6_4:-12043820 | None:intergenic |
| GATGTTTGTGTCAGAGGAAG+GGG | 0.513973 | 6_4:-12044186 | None:intergenic |
| TAAATAAAGGCGACAATGCA+GGG | 0.514620 | 6_4:+12046287 | Msa0977340:three_prime_UTR |
| ATGACAACTCATTTGAAGTA+GGG | 0.514847 | 6_4:-12044278 | None:intergenic |
| TGAGCAGGTTGTAAGGTTGA+AGG | 0.515117 | 6_4:+12041629 | None:intergenic |
| CCATCCATTACTATGACTCA+TGG | 0.515740 | 6_4:+12046002 | Msa0977340:three_prime_UTR |
| GACTTCAGTTCCGGGGTCTG+TGG | 0.517468 | 6_4:+12043318 | Msa0977340:CDS |
| TCAATATTTATAGAAAGCAA+TGG | 0.518517 | 6_4:+12045241 | Msa0977340:intron |
| TCTACTGATGTTTGTGTCAG+AGG | 0.523823 | 6_4:-12044192 | None:intergenic |
| CTAAGAATATCACTAGTATG+AGG | 0.525350 | 6_4:+12046056 | Msa0977340:three_prime_UTR |
| TTCAAACTGTCCTTTGTGCA+AGG | 0.528208 | 6_4:+12045271 | Msa0977340:CDS |
| TCAGGTGCTTGTGTAATTTG+CGG | 0.532416 | 6_4:+12045816 | Msa0977340:CDS |
| TACCTTATCCAAGAATAAAG+TGG | 0.536796 | 6_4:+12043251 | Msa0977340:CDS |
| AGTTGTCATGTGTCATATGT+TGG | 0.545984 | 6_4:+12044292 | Msa0977340:CDS |
| CTATCTAAATCTAAATGTGT+AGG | 0.546568 | 6_4:+12046333 | Msa0977340:three_prime_UTR |
| ATATGTAGTCAACCACCGTT+GGG | 0.547408 | 6_4:+12042540 | Msa0977340:CDS |
| ATGGACATGCACTTCTTGCA+AGG | 0.547960 | 6_4:+12045929 | Msa0977340:CDS |
| AGGTTGTAAGGTTGAAGGTA+TGG | 0.548834 | 6_4:+12041634 | None:intergenic |
| AGAAGGGTTGTGAGAAATGA+TGG | 0.551656 | 6_4:+12043898 | Msa0977340:CDS |
| ACTAACAATGGAAGTTCAGA+TGG | 0.555404 | 6_4:+12044096 | Msa0977340:CDS |
| GTGCATGTCCATGGTCGCAA+TGG | 0.556713 | 6_4:-12045918 | None:intergenic |
| GTTGAAGACTGTATAAAGGA+AGG | 0.565722 | 6_4:+12042562 | Msa0977340:CDS |
| TGATGTTTGTGTCAGAGGAA+GGG | 0.566455 | 6_4:-12044187 | None:intergenic |
| CGTTCCGGTGCCAGTTACGT+TGG | 0.568718 | 6_4:+12041725 | Msa0977340:CDS |
| AACAGAAATTCCACAGACCC+CGG | 0.570394 | 6_4:-12043328 | None:intergenic |
| GTTTCAATGTTCAGGTGTGT+TGG | 0.572241 | 6_4:+12042473 | Msa0977340:intron |
| TCGGCTAGACATTCTCGTAA+AGG | 0.573886 | 6_4:+12043874 | Msa0977340:CDS |
| ATGTCCATGGTCGCAATGGA+GGG | 0.574382 | 6_4:-12045914 | None:intergenic |
| CTCTGCGATCAACCCAACCC+TGG | 0.576285 | 6_4:-12044377 | None:intergenic |
| TTGCAAGAAGTGCATGTCCA+TGG | 0.577126 | 6_4:-12045927 | None:intergenic |
| TAAGCACATGACTGTTGAAG+TGG | 0.578944 | 6_4:+12046256 | Msa0977340:three_prime_UTR |
| TATATGTAGTCAACCACCGT+TGG | 0.579549 | 6_4:+12042539 | Msa0977340:CDS |
| CCATGAGTCATAGTAATGGA+TGG | 0.581771 | 6_4:-12046002 | None:intergenic |
| GTAATCACATGGAATTGTCT+GGG | 0.585390 | 6_4:-12045354 | None:intergenic |
| AAGATTCTTATACCTTGCAA+AGG | 0.588139 | 6_4:+12042599 | Msa0977340:CDS |
| AGTCAAATTAGAACTAACAA+TGG | 0.597421 | 6_4:+12044084 | Msa0977340:CDS |
| CATTCCATGAGTCATAGTAA+TGG | 0.602194 | 6_4:-12046006 | None:intergenic |
| AAATGATGGTGAAGTGGCGA+TGG | 0.603502 | 6_4:+12043912 | Msa0977340:CDS |
| GGTTGAAGGTATGGATCGAG+TGG | 0.604408 | 6_4:+12041643 | Msa0977340:exon |
| GACAGATTTCAGTTCAACAA+GGG | 0.604559 | 6_4:+12044314 | Msa0977340:CDS |
| GGACAGATTTCAGTTCAACA+AGG | 0.605166 | 6_4:+12044313 | Msa0977340:CDS |
| ACATTCTCGTAAAGGAAGAA+GGG | 0.606318 | 6_4:+12043882 | Msa0977340:CDS |
| AGGAAATGATGTTAGTACCT+CGG | 0.607880 | 6_4:+12043855 | Msa0977340:CDS |
| ATTATCAACCACATCACCAT+CGG | 0.608577 | 6_4:-12044244 | None:intergenic |
| GCTTAAATCCAAAATTATAG+GGG | 0.610355 | 6_4:-12043935 | None:intergenic |
| CATATCCACCTATACTGTCA+AGG | 0.611976 | 6_4:+12043815 | Msa0977340:CDS |
| GAATATTGTCAATATTGACA+TGG | 0.613834 | 6_4:-12044026 | None:intergenic |
| AAAACAAAATCACCTTTGCA+AGG | 0.615926 | 6_4:-12042611 | None:intergenic |
| CGAGTGGTTGCAACAGTGAG+TGG | 0.616249 | 6_4:+12041659 | Msa0977340:CDS |
| AAAATGCTTACTAATATAAG+CGG | 0.616285 | 6_4:-12045974 | None:intergenic |
| CCACCTATACTGTCAAGGAA+AGG | 0.618189 | 6_4:+12043820 | Msa0977340:CDS |
| AATATTCAAGAAAATAGTGA+AGG | 0.623793 | 6_4:+12044042 | Msa0977340:CDS |
| TCCAAGAATAAAGTGGTCAG+AGG | 0.625433 | 6_4:+12043258 | Msa0977340:CDS |
| GCAAATTACACAAGCACCTG+AGG | 0.629592 | 6_4:-12045814 | None:intergenic |
| TGACAACTCATTTGAAGTAG+GGG | 0.631458 | 6_4:-12044277 | None:intergenic |
| TGTGAGAAATGATGGTGAAG+TGG | 0.641159 | 6_4:+12043906 | Msa0977340:CDS |
| AAGACTGTATAAAGGAAGGA+AGG | 0.641299 | 6_4:+12042566 | Msa0977340:CDS |
| TCAACTGATGTTAAATCACA+CGG | 0.650116 | 6_4:-12046220 | None:intergenic |
| TCTGAGGTAGTGTAATCACA+TGG | 0.651511 | 6_4:-12045365 | None:intergenic |
| GGTGCTTGTGTAATTTGCGG+TGG | 0.655328 | 6_4:+12045819 | Msa0977340:CDS |
| TCGTTGTACTTGTGATTGTG+GGG | 0.656707 | 6_4:+12046083 | Msa0977340:three_prime_UTR |
| CATGTGATATTGTGTCCGAA+AGG | 0.657843 | 6_4:+12043286 | Msa0977340:CDS |
| TTTACGAGAATGTCTAGCCG+AGG | 0.658425 | 6_4:-12043872 | None:intergenic |
| CAGATTTCAGTTCAACAAGG+GGG | 0.664303 | 6_4:+12044316 | Msa0977340:CDS |
| AAAATTCTCCGATGGTGATG+TGG | 0.665179 | 6_4:+12044236 | Msa0977340:CDS |
| TACAGTCTTCAACCCAACGG+TGG | 0.666109 | 6_4:-12042552 | None:intergenic |
| TTATACAGTCTTCAACCCAA+CGG | 0.666643 | 6_4:-12042555 | None:intergenic |
| ACAGATTTCAGTTCAACAAG+GGG | 0.667970 | 6_4:+12044315 | Msa0977340:CDS |
| ATAATACTGGCCTTGCACAA+AGG | 0.674795 | 6_4:-12045281 | None:intergenic |
| AAATACTGACTTCAGTTCCG+GGG | 0.690610 | 6_4:+12043311 | Msa0977340:CDS |
| AATATTTATAGAAAGCAATG+GGG | 0.692135 | 6_4:+12045243 | Msa0977340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAAAATAATAATA+AGG | - | chr6_4:12045478-12045497 | None:intergenic | 0.0% |
| !!! | TACATATATTTTTAATTTAC+GGG | - | chr6_4:12042527-12042546 | None:intergenic | 10.0% |
| !!! | CTACATATATTTTTAATTTA+CGG | - | chr6_4:12042528-12042547 | None:intergenic | 10.0% |
| !! | GTATAATAATAAAAAGATAT+TGG | - | chr6_4:12044414-12044433 | None:intergenic | 10.0% |
| !! | ACAATAAATATAGTTTAATA+TGG | - | chr6_4:12045447-12045466 | None:intergenic | 10.0% |
| !! | TATTAAACTATATTTATTGT+CGG | + | chr6_4:12045447-12045466 | Msa0977340:intron | 10.0% |
| !! | ATCTAATAAGTATAAACATT+TGG | - | chr6_4:12042297-12042316 | None:intergenic | 15.0% |
| !!! | AAATGGAATTTTATTTTAAC+TGG | + | chr6_4:12042348-12042367 | Msa0977340:intron | 15.0% |
| !! | TTATGTATTTAACTAATTAC+AGG | + | chr6_4:12042373-12042392 | Msa0977340:intron | 15.0% |
| !!! | TATATTTTATGTTATGTGAT+GGG | + | chr6_4:12042986-12043005 | Msa0977340:intron | 15.0% |
| !!! | TAACTTATTATTATTTTCAG+TGG | + | chr6_4:12043177-12043196 | Msa0977340:intron | 15.0% |
| !! | ATAAACATAATTCATTTACT+TGG | - | chr6_4:12043726-12043745 | None:intergenic | 15.0% |
| !!! | TTTGAAAACAAATTCTAAAA+AGG | - | chr6_4:12044687-12044706 | None:intergenic | 15.0% |
| !!! | TTTTGTGAATGATAAATATT+TGG | + | chr6_4:12045549-12045568 | Msa0977340:intron | 15.0% |
| !! | ATTTAACTATTCAATTGTTG+TGG | + | chr6_4:12041807-12041826 | Msa0977340:intron | 20.0% |
| !! | AAAAGAAAAAAGTTGAAGAA+AGG | + | chr6_4:12041958-12041977 | Msa0977340:intron | 20.0% |
| !! | AAAGAAAAAAGTTGAAGAAA+GGG | + | chr6_4:12041959-12041978 | Msa0977340:intron | 20.0% |
| !!! | TATTTAACAACACTGATTAT+AGG | + | chr6_4:12042166-12042185 | Msa0977340:intron | 20.0% |
| !!! | TTATAAAATCCAATGCATTT+TGG | - | chr6_4:12042681-12042700 | None:intergenic | 20.0% |
| !!! | AAACTGAAATTTACTTTTAC+AGG | + | chr6_4:12042841-12042860 | Msa0977340:intron | 20.0% |
| !!! | GTATATTTTATGTTATGTGA+TGG | + | chr6_4:12042985-12043004 | Msa0977340:intron | 20.0% |
| !!! | TAAATAACAAGTTGAGAAAA+TGG | - | chr6_4:12043600-12043619 | None:intergenic | 20.0% |
| !!! | TTTTTAATCCCATAAATAGA+AGG | + | chr6_4:12043661-12043680 | Msa0977340:intron | 20.0% |
| !!! | TTTTAATCCCATAAATAGAA+GGG | + | chr6_4:12043662-12043681 | Msa0977340:intron | 20.0% |
| !! | TGCTTAAATCCAAAATTATA+GGG | - | chr6_4:12043939-12043958 | None:intergenic | 20.0% |
| !! | AATATTCAAGAAAATAGTGA+AGG | + | chr6_4:12044042-12044061 | Msa0977340:CDS | 20.0% |
| !! | CTATAAACAAAGTTGAATTT+CGG | - | chr6_4:12044161-12044180 | None:intergenic | 20.0% |
| !! | GTCTATACTAATCAATTAAT+AGG | - | chr6_4:12044444-12044463 | None:intergenic | 20.0% |
| !!! | TTTTGAATGAATTTGAAAGT+TGG | + | chr6_4:12044486-12044505 | Msa0977340:intron | 20.0% |
| !! | TCAATTCAACTAATACAATA+AGG | - | chr6_4:12044638-12044657 | None:intergenic | 20.0% |
| !! | ATTGTATTAGTTGAATTGAA+TGG | + | chr6_4:12044639-12044658 | Msa0977340:intron | 20.0% |
| !! | TGGTTATACAAATACAAATA+TGG | + | chr6_4:12044659-12044678 | Msa0977340:intron | 20.0% |
| !! | AATTGTTTGATAAAAACTGA+TGG | - | chr6_4:12044761-12044780 | None:intergenic | 20.0% |
| !!! | TTTTAATTTTCCCTTAGAAT+AGG | + | chr6_4:12045103-12045122 | Msa0977340:intron | 20.0% |
| !! | AATAGGTTATGGTTTATATA+TGG | + | chr6_4:12045120-12045139 | Msa0977340:intron | 20.0% |
| !! | TCAATATTTATAGAAAGCAA+TGG | + | chr6_4:12045241-12045260 | Msa0977340:intron | 20.0% |
| !! | CAATATTTATAGAAAGCAAT+GGG | + | chr6_4:12045242-12045261 | Msa0977340:intron | 20.0% |
| !! | AATATTTATAGAAAGCAATG+GGG | + | chr6_4:12045243-12045262 | Msa0977340:intron | 20.0% |
| !! | CAATTGTTGAATAACATATT+AGG | - | chr6_4:12045673-12045692 | None:intergenic | 20.0% |
| !! | AAAATGCTTACTAATATAAG+CGG | - | chr6_4:12045977-12045996 | None:intergenic | 20.0% |
| ! | TAACAAAATCTCACTTTATG+AGG | + | chr6_4:12041861-12041880 | Msa0977340:intron | 25.0% |
| ! | GATGAATGAGTAAAAATCAT+AGG | + | chr6_4:12041914-12041933 | Msa0977340:intron | 25.0% |
| !! | TAATCAGTGTTGTTAAATAG+AGG | - | chr6_4:12042165-12042184 | None:intergenic | 25.0% |
| ! | GGTATAATTCTACGATAATT+GGG | - | chr6_4:12042660-12042679 | None:intergenic | 25.0% |
| ! | TGGTATAATTCTACGATAAT+TGG | - | chr6_4:12042661-12042680 | None:intergenic | 25.0% |
| ! | AGAATTATACCAAAATGCAT+TGG | + | chr6_4:12042669-12042688 | Msa0977340:intron | 25.0% |
| !!! | TTTTTTTGTAGTTTGAGGTT+CGG | + | chr6_4:12043037-12043056 | Msa0977340:intron | 25.0% |
| ! | GACCTTATTAACAAATAAGA+CGG | + | chr6_4:12043067-12043086 | Msa0977340:intron | 25.0% |
| !!! | AACCGTCTTATTTGTTAATA+AGG | - | chr6_4:12043072-12043091 | None:intergenic | 25.0% |
| !!! | AATAAGACGGTTATTTTGTT+TGG | + | chr6_4:12043080-12043099 | Msa0977340:intron | 25.0% |
| !!! | TGTTGCTTAATTTTCTGAAT+AGG | + | chr6_4:12043515-12043534 | Msa0977340:intron | 25.0% |
| !! | GTTGCTTAATTTTCTGAATA+GGG | + | chr6_4:12043516-12043535 | Msa0977340:intron | 25.0% |
| ! | GTTATTTATGCATGTTCTTT+AGG | + | chr6_4:12043612-12043631 | Msa0977340:intron | 25.0% |
| ! | GAATTATGTTTATGTTCTTC+TGG | + | chr6_4:12043733-12043752 | Msa0977340:intron | 25.0% |
| ! | GCTTAAATCCAAAATTATAG+GGG | - | chr6_4:12043938-12043957 | None:intergenic | 25.0% |
| ! | GTGCTTAAATCCAAAATTAT+AGG | - | chr6_4:12043940-12043959 | None:intergenic | 25.0% |
| ! | GAATATTGTCAATATTGACA+TGG | - | chr6_4:12044029-12044048 | None:intergenic | 25.0% |
| ! | AGTCAAATTAGAACTAACAA+TGG | + | chr6_4:12044084-12044103 | Msa0977340:CDS | 25.0% |
| ! | TCATTCAACCAATAGTAATT+TGG | + | chr6_4:12044560-12044579 | Msa0977340:intron | 25.0% |
| ! | AACAGAAACCAAATTACTAT+TGG | - | chr6_4:12044571-12044590 | None:intergenic | 25.0% |
| !! | TTTCAAAAGTGTGTAGTTAT+AGG | + | chr6_4:12044700-12044719 | Msa0977340:intron | 25.0% |
| !! | TTCAAAAGTGTGTAGTTATA+GGG | + | chr6_4:12044701-12044720 | Msa0977340:intron | 25.0% |
| ! | ATGATCAATTATATCAGCTA+TGG | + | chr6_4:12044832-12044851 | Msa0977340:intron | 25.0% |
| ! | ATGATCAATTATATCAGCTA+TGG | + | chr6_4:12044832-12044851 | Msa0977340:intron | 25.0% |
| !! | TCATTTAAGTTTCATCATCA+TGG | - | chr6_4:12044936-12044955 | None:intergenic | 25.0% |
| ! | TAAACCATAACCTATTCTAA+GGG | - | chr6_4:12045116-12045135 | None:intergenic | 25.0% |
| ! | ATAAACCATAACCTATTCTA+AGG | - | chr6_4:12045117-12045136 | None:intergenic | 25.0% |
| ! | AAAATGACATCTATAGAGTA+CGG | - | chr6_4:12045191-12045210 | None:intergenic | 25.0% |
| ! | TTTCATGATCTTCATAATAC+TGG | - | chr6_4:12045297-12045316 | None:intergenic | 25.0% |
| ! | ATTCTTTCATTCTAACATGA+AGG | + | chr6_4:12045577-12045596 | Msa0977340:intron | 25.0% |
| !! | TGTCTCTAAAAAAATTTCCT+TGG | - | chr6_4:12045610-12045629 | None:intergenic | 25.0% |
| !!! | ACTAGAATTTGCTCATTTTA+CGG | + | chr6_4:12045630-12045649 | Msa0977340:intron | 25.0% |
| !! | AATCTTTACTGTACACATTT+TGG | + | chr6_4:12045724-12045743 | Msa0977340:intron | 25.0% |
| ! | AAGAATTCATTCTTATTGCA+TGG | + | chr6_4:12045890-12045909 | Msa0977340:CDS | 25.0% |
| ! | CTATCTAAATCTAAATGTGT+AGG | + | chr6_4:12046333-12046352 | Msa0977340:three_prime_UTR | 25.0% |
| CTATGTTGTTAGTGATGAAT+TGG | + | chr6_4:12041892-12041911 | Msa0977340:intron | 30.0% | |
| TTGTTAAATAGAGGTTACAG+TGG | - | chr6_4:12042156-12042175 | None:intergenic | 30.0% | |
| ! | TTAACAACACTGATTATAGG+AGG | + | chr6_4:12042169-12042188 | Msa0977340:intron | 30.0% |
| !!! | GTGGCTTAATTTTTTCTCAT+TGG | + | chr6_4:12042247-12042266 | Msa0977340:intron | 30.0% |
| !!! | GCTTAATTTTTTCTCATTGG+TGG | + | chr6_4:12042250-12042269 | Msa0977340:intron | 30.0% |
| ATCCACACAAACGTAATAAA+TGG | + | chr6_4:12042331-12042350 | Msa0977340:intron | 30.0% | |
| TTCCATTTATTACGTTTGTG+TGG | - | chr6_4:12042336-12042355 | None:intergenic | 30.0% | |
| AATATCGTGTTTCAATGTTC+AGG | + | chr6_4:12042465-12042484 | Msa0977340:intron | 30.0% | |
| AAGATTCTTATACCTTGCAA+AGG | + | chr6_4:12042599-12042618 | Msa0977340:CDS | 30.0% | |
| AAAACAAAATCACCTTTGCA+AGG | - | chr6_4:12042614-12042633 | None:intergenic | 30.0% | |
| !!! | GCTGTCTTTTTTCTATCAAA+AGG | - | chr6_4:12042715-12042734 | None:intergenic | 30.0% |
| GTGTGAATTTAAATGACTGT+TGG | + | chr6_4:12042760-12042779 | Msa0977340:intron | 30.0% | |
| !!! | GAAGGTTTTTTTGTAGTTTG+AGG | + | chr6_4:12043032-12043051 | Msa0977340:intron | 30.0% |
| AGACAGCAGATTATAACAAA+GGG | - | chr6_4:12043126-12043145 | None:intergenic | 30.0% | |
| TAGACAGCAGATTATAACAA+AGG | - | chr6_4:12043127-12043146 | None:intergenic | 30.0% | |
| ATCTGCTGTCTAGTAAAATT+TGG | + | chr6_4:12043135-12043154 | Msa0977340:intron | 30.0% | |
| ACTGGAACTTCCATTAATAA+TGG | - | chr6_4:12043216-12043235 | None:intergenic | 30.0% | |
| TACCTTATCCAAGAATAAAG+TGG | + | chr6_4:12043251-12043270 | Msa0977340:CDS | 30.0% | |
| AGATTCTTCTTTACTGAAAC+AGG | + | chr6_4:12043356-12043375 | Msa0977340:CDS | 30.0% | |
| !!! | TACTTTCCTTTTTTCAAGCA+TGG | + | chr6_4:12043781-12043800 | Msa0977340:intron | 30.0% |
| !!! | ACTTTCCTTTTTTCAAGCAT+GGG | + | chr6_4:12043782-12043801 | Msa0977340:intron | 30.0% |
| AGGAAAGGTAAAAGAAATAG+AGG | + | chr6_4:12043835-12043854 | Msa0977340:CDS | 30.0% | |
| ! | ATGACAACTCATTTGAAGTA+GGG | - | chr6_4:12044281-12044300 | None:intergenic | 30.0% |
| !!! | TTTTTGTTTTTCATGCATCC+AGG | + | chr6_4:12044359-12044378 | Msa0977340:CDS | 30.0% |
| !!! | TTTTGTTTTTCATGCATCCA+GGG | + | chr6_4:12044360-12044379 | Msa0977340:CDS | 30.0% |
| TGTTATCCTTTCATTCTTAC+TGG | + | chr6_4:12044519-12044538 | Msa0977340:intron | 30.0% | |
| ! | GTTTTTCCAGTAAGAATGAA+AGG | - | chr6_4:12044528-12044547 | None:intergenic | 30.0% |
| !! | TTTGGTTTCTGTTTTCTCAT+TGG | + | chr6_4:12044578-12044597 | Msa0977340:intron | 30.0% |
| ! | TTGGTTTCTGTTTTCTCATT+GGG | + | chr6_4:12044579-12044598 | Msa0977340:intron | 30.0% |
| GTTGAAACTCGAAAATGTAT+TGG | - | chr6_4:12044986-12045005 | None:intergenic | 30.0% | |
| ! | AACAAAATCCTTTTAGCACT+AGG | - | chr6_4:12045061-12045080 | None:intergenic | 30.0% |
| ! | TTTTCCCTTAGAATAGGTTA+TGG | + | chr6_4:12045109-12045128 | Msa0977340:intron | 30.0% |
| GGAACTTTGAATCAAATATG+TGG | + | chr6_4:12045141-12045160 | Msa0977340:intron | 30.0% | |
| AATTGGGATACAAAAATCTG+AGG | - | chr6_4:12045384-12045403 | None:intergenic | 30.0% | |
| CTGGAAATTCTTGATCAATT+GGG | - | chr6_4:12045400-12045419 | None:intergenic | 30.0% | |
| TCTGGAAATTCTTGATCAAT+TGG | - | chr6_4:12045401-12045420 | None:intergenic | 30.0% | |
| ! | TTCACAAAATTAAAAAGCGC+AGG | - | chr6_4:12045538-12045557 | None:intergenic | 30.0% |
| !! | CTAGAATTTGCTCATTTTAC+GGG | + | chr6_4:12045631-12045650 | Msa0977340:intron | 30.0% |
| CTAAGAATATCACTAGTATG+AGG | + | chr6_4:12046056-12046075 | Msa0977340:three_prime_UTR | 30.0% | |
| ! | TCTGTCGTTTCAATTTGATT+TGG | + | chr6_4:12046174-12046193 | Msa0977340:three_prime_UTR | 30.0% |
| !! | TTTGATTTGGCTATCTGTTT+AGG | + | chr6_4:12046187-12046206 | Msa0977340:three_prime_UTR | 30.0% |
| ! | CTATCTGTTTAGGATTAATC+TGG | + | chr6_4:12046197-12046216 | Msa0977340:three_prime_UTR | 30.0% |
| TCAACTGATGTTAAATCACA+CGG | - | chr6_4:12046223-12046242 | None:intergenic | 30.0% | |
| AGTGGAACATCACTAAATAA+AGG | + | chr6_4:12046274-12046293 | Msa0977340:three_prime_UTR | 30.0% | |
| ! | GCTATGTTTCTATTGCATAG+CGG | - | chr6_4:12042132-12042151 | None:intergenic | 35.0% |
| TGCTCAGTGTAGTATTTAAG+TGG | + | chr6_4:12042228-12042247 | Msa0977340:intron | 35.0% | |
| TTATACAGTCTTCAACCCAA+CGG | - | chr6_4:12042558-12042577 | None:intergenic | 35.0% | |
| !! | TTGGGTTGAAGACTGTATAA+AGG | + | chr6_4:12042558-12042577 | Msa0977340:CDS | 35.0% |
| GTTGAAGACTGTATAAAGGA+AGG | + | chr6_4:12042562-12042581 | Msa0977340:CDS | 35.0% | |
| AAGACTGTATAAAGGAAGGA+AGG | + | chr6_4:12042566-12042585 | Msa0977340:CDS | 35.0% | |
| GCAAGGTATAAGAATCTTCT+GGG | - | chr6_4:12042597-12042616 | None:intergenic | 35.0% | |
| TGCAAGGTATAAGAATCTTC+TGG | - | chr6_4:12042598-12042617 | None:intergenic | 35.0% | |
| ATAGAAAAAAGACAGCACGA+TGG | + | chr6_4:12042719-12042738 | Msa0977340:intron | 35.0% | |
| TAGAAAAAAGACAGCACGAT+GGG | + | chr6_4:12042720-12042739 | Msa0977340:intron | 35.0% | |
| ! | ATTTTCAGTGGACAAGAAGT+AGG | + | chr6_4:12043189-12043208 | Msa0977340:intron | 35.0% |
| ! | TTTTCAGTGGACAAGAAGTA+GGG | + | chr6_4:12043190-12043209 | Msa0977340:intron | 35.0% |
| AGAAGTAGGGCCATTATTAA+TGG | + | chr6_4:12043203-12043222 | Msa0977340:CDS | 35.0% | |
| GACCACTTTATTCTTGGATA+AGG | - | chr6_4:12043256-12043275 | None:intergenic | 35.0% | |
| ! | GAAGTCAGTATTTTGCCTTT+CGG | - | chr6_4:12043304-12043323 | None:intergenic | 35.0% |
| !! | CAAAATACTGACTTCAGTTC+CGG | + | chr6_4:12043309-12043328 | Msa0977340:CDS | 35.0% |
| !! | AAAATACTGACTTCAGTTCC+GGG | + | chr6_4:12043310-12043329 | Msa0977340:CDS | 35.0% |
| TTACTGAAACAGGTAACAAC+AGG | + | chr6_4:12043366-12043385 | Msa0977340:intron | 35.0% | |
| ACAATTGAAAAGCAGCTAGA+GGG | - | chr6_4:12043411-12043430 | None:intergenic | 35.0% | |
| AACAATTGAAAAGCAGCTAG+AGG | - | chr6_4:12043412-12043431 | None:intergenic | 35.0% | |
| GAACATTGCATATAACGACT+GGG | - | chr6_4:12043451-12043470 | None:intergenic | 35.0% | |
| TGAACATTGCATATAACGAC+TGG | - | chr6_4:12043452-12043471 | None:intergenic | 35.0% | |
| ATCAGAATTCAGAACATGCT+TGG | - | chr6_4:12043486-12043505 | None:intergenic | 35.0% | |
| TGTAACGCCCTTCTATTTAT+GGG | - | chr6_4:12043672-12043691 | None:intergenic | 35.0% | |
| TTGTAACGCCCTTCTATTTA+TGG | - | chr6_4:12043673-12043692 | None:intergenic | 35.0% | |
| !!! | CTTTCCTTTTTTCAAGCATG+GGG | + | chr6_4:12043783-12043802 | Msa0977340:intron | 35.0% |
| TTACCTTTCCTTGACAGTAT+AGG | - | chr6_4:12043826-12043845 | None:intergenic | 35.0% | |
| AGGAAATGATGTTAGTACCT+CGG | + | chr6_4:12043855-12043874 | Msa0977340:CDS | 35.0% | |
| ACATTCTCGTAAAGGAAGAA+GGG | + | chr6_4:12043882-12043901 | Msa0977340:CDS | 35.0% | |
| ACTAACAATGGAAGTTCAGA+TGG | + | chr6_4:12044096-12044115 | Msa0977340:CDS | 35.0% | |
| ATTATCAACCACATCACCAT+CGG | - | chr6_4:12044247-12044266 | None:intergenic | 35.0% | |
| ! | TGACAACTCATTTGAAGTAG+GGG | - | chr6_4:12044280-12044299 | None:intergenic | 35.0% |
| ! | CATGACAACTCATTTGAAGT+AGG | - | chr6_4:12044282-12044301 | None:intergenic | 35.0% |
| AGTTGTCATGTGTCATATGT+TGG | + | chr6_4:12044292-12044311 | Msa0977340:CDS | 35.0% | |
| GACAGATTTCAGTTCAACAA+GGG | + | chr6_4:12044314-12044333 | Msa0977340:CDS | 35.0% | |
| ACAGATTTCAGTTCAACAAG+GGG | + | chr6_4:12044315-12044334 | Msa0977340:CDS | 35.0% | |
| AGTATAGACTTGTCTTATGC+TGG | + | chr6_4:12044455-12044474 | Msa0977340:intron | 35.0% | |
| ! | GTTTTCTCATTGGGATTTTG+AGG | + | chr6_4:12044588-12044607 | Msa0977340:intron | 35.0% |
| GGCACATCAGAAATCTAAAA+AGG | - | chr6_4:12044740-12044759 | None:intergenic | 35.0% | |
| ! | TGTTTTCTTTGCATAGCTGA+TGG | + | chr6_4:12044786-12044805 | Msa0977340:intron | 35.0% |
| ! | AAATCCTTTTAGCACTAGGT+TGG | - | chr6_4:12045057-12045076 | None:intergenic | 35.0% |
| GTAATCACATGGAATTGTCT+GGG | - | chr6_4:12045357-12045376 | None:intergenic | 35.0% | |
| TGTAATCACATGGAATTGTC+TGG | - | chr6_4:12045358-12045377 | None:intergenic | 35.0% | |
| ATTTCCAGACAATAGCTTAG+AGG | + | chr6_4:12045412-12045431 | Msa0977340:CDS | 35.0% | |
| AACATGAAGGATGAAAACCA+AGG | + | chr6_4:12045590-12045609 | Msa0977340:intron | 35.0% | |
| !! | TTTACTGTACACATTTTGGC+TGG | + | chr6_4:12045728-12045747 | Msa0977340:intron | 35.0% |
| CAATTCTCAAGTAGATCTTC+AGG | - | chr6_4:12045852-12045871 | None:intergenic | 35.0% | |
| CATTCCATGAGTCATAGTAA+TGG | - | chr6_4:12046009-12046028 | None:intergenic | 35.0% | |
| TTCGTTGTACTTGTGATTGT+GGG | + | chr6_4:12046082-12046101 | Msa0977340:three_prime_UTR | 35.0% | |
| TAAATAAAGGCGACAATGCA+GGG | + | chr6_4:12046287-12046306 | Msa0977340:three_prime_UTR | 35.0% | |
| AGGGATCGTTTATGTATGTT+AGG | + | chr6_4:12046306-12046325 | Msa0977340:three_prime_UTR | 35.0% | |
| ATTAAGCTCATTTCGCGTTC+CGG | + | chr6_4:12041710-12041729 | Msa0977340:CDS | 40.0% | |
| GTCGAAGTCAATTACTCATC+TGG | + | chr6_4:12041754-12041773 | Msa0977340:CDS | 40.0% | |
| ATGAGTGCTATAGGCTATAG+TGG | + | chr6_4:12042043-12042062 | Msa0977340:intron | 40.0% | |
| TAGACGCATACAACTCAATG+TGG | - | chr6_4:12042203-12042222 | None:intergenic | 40.0% | |
| !!! | TTGGTGGCTAGCTTTTGAAA+AGG | + | chr6_4:12042266-12042285 | Msa0977340:intron | 40.0% |
| !!! | TGGTGGCTAGCTTTTGAAAA+GGG | + | chr6_4:12042267-12042286 | Msa0977340:intron | 40.0% |
| GTTTCAATGTTCAGGTGTGT+TGG | + | chr6_4:12042473-12042492 | Msa0977340:intron | 40.0% | |
| TATATGTAGTCAACCACCGT+TGG | + | chr6_4:12042539-12042558 | Msa0977340:CDS | 40.0% | |
| ATATGTAGTCAACCACCGTT+GGG | + | chr6_4:12042540-12042559 | Msa0977340:CDS | 40.0% | |
| !!! | GTTTTGCTTTGAGTTGTGTC+TGG | + | chr6_4:12042815-12042834 | Msa0977340:intron | 40.0% |
| CATGACAACAAAAACCAGTG+AGG | - | chr6_4:12042959-12042978 | None:intergenic | 40.0% | |
| GTACTTGCTTGAACATTGAC+TGG | - | chr6_4:12043234-12043253 | None:intergenic | 40.0% | |
| TCCAAGAATAAAGTGGTCAG+AGG | + | chr6_4:12043258-12043277 | Msa0977340:CDS | 40.0% | |
| TCCTCTGACCACTTTATTCT+TGG | - | chr6_4:12043262-12043281 | None:intergenic | 40.0% | |
| CATGTGATATTGTGTCCGAA+AGG | + | chr6_4:12043286-12043305 | Msa0977340:CDS | 40.0% | |
| !! | AAATACTGACTTCAGTTCCG+GGG | + | chr6_4:12043311-12043330 | Msa0977340:CDS | 40.0% |
| ! | GGTCTGTGGAATTTCTGTTT+TGG | + | chr6_4:12043332-12043351 | Msa0977340:CDS | 40.0% |
| CAATTGAAAAGCAGCTAGAG+GGG | - | chr6_4:12043410-12043429 | None:intergenic | 40.0% | |
| ! | CTCAGCTTTCAAGTGATATG+TGG | + | chr6_4:12043539-12043558 | Msa0977340:intron | 40.0% |
| ACAATCCTGTAGGTGCATTA+TGG | + | chr6_4:12043689-12043708 | Msa0977340:intron | 40.0% | |
| GTATACCATAATGCACCTAC+AGG | - | chr6_4:12043697-12043716 | None:intergenic | 40.0% | |
| AGGTGCATTATGGTATACGA+TGG | + | chr6_4:12043699-12043718 | Msa0977340:intron | 40.0% | |
| CATATCCACCTATACTGTCA+AGG | + | chr6_4:12043815-12043834 | Msa0977340:CDS | 40.0% | |
| GACATTCTCGTAAAGGAAGA+AGG | + | chr6_4:12043881-12043900 | Msa0977340:CDS | 40.0% | |
| AGAAGGGTTGTGAGAAATGA+TGG | + | chr6_4:12043898-12043917 | Msa0977340:CDS | 40.0% | |
| ! | TGTGAGAAATGATGGTGAAG+TGG | + | chr6_4:12043906-12043925 | Msa0977340:CDS | 40.0% |
| ACCAGCTTTGCGAAATAGAT+AGG | + | chr6_4:12043965-12043984 | Msa0977340:CDS | 40.0% | |
| CAATATTGACATGGCGAGAA+AGG | - | chr6_4:12044020-12044039 | None:intergenic | 40.0% | |
| AATAGTGAAGGACTTGATGC+TGG | + | chr6_4:12044054-12044073 | Msa0977340:CDS | 40.0% | |
| TGATGTTTGTGTCAGAGGAA+GGG | - | chr6_4:12044190-12044209 | None:intergenic | 40.0% | |
| TCTACTGATGTTTGTGTCAG+AGG | - | chr6_4:12044195-12044214 | None:intergenic | 40.0% | |
| ! | AAAATTCTCCGATGGTGATG+TGG | + | chr6_4:12044236-12044255 | Msa0977340:CDS | 40.0% |
| GGACAGATTTCAGTTCAACA+AGG | + | chr6_4:12044313-12044332 | Msa0977340:CDS | 40.0% | |
| CAGATTTCAGTTCAACAAGG+GGG | + | chr6_4:12044316-12044335 | Msa0977340:CDS | 40.0% | |
| ! | TTTTTCATGCATCCAGGGTT+GGG | + | chr6_4:12044365-12044384 | Msa0977340:CDS | 40.0% |
| GTTTCCAACCTAGTGCTAAA+AGG | + | chr6_4:12045050-12045069 | Msa0977340:intron | 40.0% | |
| TTCAAACTGTCCTTTGTGCA+AGG | + | chr6_4:12045271-12045290 | Msa0977340:CDS | 40.0% | |
| !! | ATAATACTGGCCTTGCACAA+AGG | - | chr6_4:12045284-12045303 | None:intergenic | 40.0% |
| !! | GGAGTATGCTTTTTGATCAG+TGG | - | chr6_4:12045336-12045355 | None:intergenic | 40.0% |
| ! | TCTGAGGTAGTGTAATCACA+TGG | - | chr6_4:12045368-12045387 | None:intergenic | 40.0% |
| CATACCTCTAAGCTATTGTC+TGG | - | chr6_4:12045419-12045438 | None:intergenic | 40.0% | |
| ! | ATTTTGCTTGTACAGTCCTC+AGG | + | chr6_4:12045798-12045817 | Msa0977340:intron | 40.0% |
| TCAGGTGCTTGTGTAATTTG+CGG | + | chr6_4:12045816-12045835 | Msa0977340:CDS | 40.0% | |
| ! | CCATGAGTCATAGTAATGGA+TGG | - | chr6_4:12046005-12046024 | None:intergenic | 40.0% |
| CCATCCATTACTATGACTCA+TGG | + | chr6_4:12046002-12046021 | Msa0977340:three_prime_UTR | 40.0% | |
| GTTCGTTGTACTTGTGATTG+TGG | + | chr6_4:12046081-12046100 | Msa0977340:three_prime_UTR | 40.0% | |
| TCGTTGTACTTGTGATTGTG+GGG | + | chr6_4:12046083-12046102 | Msa0977340:three_prime_UTR | 40.0% | |
| TAAGCACATGACTGTTGAAG+TGG | + | chr6_4:12046256-12046275 | Msa0977340:three_prime_UTR | 40.0% | |
| CTAAATAAAGGCGACAATGC+AGG | + | chr6_4:12046286-12046305 | Msa0977340:three_prime_UTR | 40.0% | |
| GATTGAATCGCTCGAGTTCA+CGG | - | chr6_4:12041688-12041707 | None:intergenic | 45.0% | |
| CGACATATCTCCAACGTAAC+TGG | - | chr6_4:12041738-12041757 | None:intergenic | 45.0% | |
| CCTATAGCACTCATGTGTAG+CGG | - | chr6_4:12042037-12042056 | None:intergenic | 45.0% | |
| CAGGTGTGTTGGAAGTTTGA+AGG | + | chr6_4:12042484-12042503 | Msa0977340:intron | 45.0% | |
| ACCAGTGAGGTTTAACTCGT+AGG | - | chr6_4:12042946-12042965 | None:intergenic | 45.0% | |
| AACAGAAATTCCACAGACCC+CGG | - | chr6_4:12043331-12043350 | None:intergenic | 45.0% | |
| GACTCCCCATGCTTGAAAAA+AGG | - | chr6_4:12043790-12043809 | None:intergenic | 45.0% | |
| CCTTTCCTTGACAGTATAGG+TGG | - | chr6_4:12043823-12043842 | None:intergenic | 45.0% | |
| CCACCTATACTGTCAAGGAA+AGG | + | chr6_4:12043820-12043839 | Msa0977340:CDS | 45.0% | |
| TTTACGAGAATGTCTAGCCG+AGG | - | chr6_4:12043875-12043894 | None:intergenic | 45.0% | |
| TCGGCTAGACATTCTCGTAA+AGG | + | chr6_4:12043874-12043893 | Msa0977340:CDS | 45.0% | |
| ! | AAATGATGGTGAAGTGGCGA+TGG | + | chr6_4:12043912-12043931 | Msa0977340:CDS | 45.0% |
| GCCTATCTATTTCGCAAAGC+TGG | - | chr6_4:12043969-12043988 | None:intergenic | 45.0% | |
| GATGTTTGTGTCAGAGGAAG+GGG | - | chr6_4:12044189-12044208 | None:intergenic | 45.0% | |
| CTGATGTTTGTGTCAGAGGA+AGG | - | chr6_4:12044191-12044210 | None:intergenic | 45.0% | |
| !! | GGAGAATTTTTCAGCAGCAC+TGG | - | chr6_4:12044226-12044245 | None:intergenic | 45.0% |
| GCTGCTGAAAAATTCTCCGA+TGG | + | chr6_4:12044228-12044247 | Msa0977340:CDS | 45.0% | |
| ! | CAGTTCAACAAGGGGGATTT+TGG | + | chr6_4:12044323-12044342 | Msa0977340:CDS | 45.0% |
| ! | GTTTTTCATGCATCCAGGGT+TGG | + | chr6_4:12044364-12044383 | Msa0977340:CDS | 45.0% |
| ACCACCTTGCTGACATTGTT+GGG | + | chr6_4:12044612-12044631 | Msa0977340:intron | 45.0% | |
| TTTGCATAGCTGATGGCACA+TGG | + | chr6_4:12044793-12044812 | Msa0977340:intron | 45.0% | |
| TTGCATAGCTGATGGCACAT+GGG | + | chr6_4:12044794-12044813 | Msa0977340:intron | 45.0% | |
| GCAAATTACACAAGCACCTG+AGG | - | chr6_4:12045817-12045836 | None:intergenic | 45.0% | |
| ! | CTTGTGTAATTTGCGGTGGT+CGG | + | chr6_4:12045823-12045842 | Msa0977340:CDS | 45.0% |
| ! | TTGTGTAATTTGCGGTGGTC+GGG | + | chr6_4:12045824-12045843 | Msa0977340:CDS | 45.0% |
| ! | TTGCAAGAAGTGCATGTCCA+TGG | - | chr6_4:12045930-12045949 | None:intergenic | 45.0% |
| ATGGACATGCACTTCTTGCA+AGG | + | chr6_4:12045929-12045948 | Msa0977340:CDS | 45.0% | |
| ! | GGTTGAAGGTATGGATCGAG+TGG | + | chr6_4:12041643-12041662 | Msa0977340:exon | 50.0% |
| ATCTCCAACGTAACTGGCAC+CGG | - | chr6_4:12041732-12041751 | None:intergenic | 50.0% | |
| CCGCTACACATGAGTGCTAT+AGG | + | chr6_4:12042034-12042053 | Msa0977340:intron | 50.0% | |
| TACAGTCTTCAACCCAACGG+TGG | - | chr6_4:12042555-12042574 | None:intergenic | 50.0% | |
| GCCTACGAGTTAAACCTCAC+TGG | + | chr6_4:12042942-12042961 | Msa0977340:intron | 50.0% | |
| !! | ATGTGATGGGCTTCTCTGTG+TGG | + | chr6_4:12042999-12043018 | Msa0977340:intron | 50.0% |
| !! | CTGTGTGGAGAGTTTGCTGA+AGG | + | chr6_4:12043014-12043033 | Msa0977340:intron | 50.0% |
| AAAGCAGCTAGAGGGGAACA+TGG | - | chr6_4:12043403-12043422 | None:intergenic | 50.0% | |
| !! | GAAGGGCGTTACAATCCTGT+AGG | + | chr6_4:12043679-12043698 | Msa0977340:intron | 50.0% |
| ! | GGCGATGGCCCCTATAATTT+TGG | + | chr6_4:12043927-12043946 | Msa0977340:CDS | 50.0% |
| GCTAGATGTAGCTGCAGCTT+CGG | - | chr6_4:12043998-12044017 | None:intergenic | 50.0% | |
| !!! | ACAAGGGGGATTTTGGAGTG+CGG | + | chr6_4:12044330-12044349 | Msa0977340:CDS | 50.0% |
| CACCACCTTGCTGACATTGT+TGG | + | chr6_4:12044611-12044630 | Msa0977340:intron | 50.0% | |
| AAGGCCCAACAATGTCAGCA+AGG | - | chr6_4:12044619-12044638 | None:intergenic | 50.0% | |
| GGCACAAAACTCGTAGCTGA+TGG | + | chr6_4:12044853-12044872 | Msa0977340:intron | 50.0% | |
| AACTCGTAGCTGATGGCACA+TGG | + | chr6_4:12044860-12044879 | Msa0977340:intron | 50.0% | |
| ACTCGTAGCTGATGGCACAT+GGG | + | chr6_4:12044861-12044880 | Msa0977340:intron | 50.0% | |
| ! | GGTGCTTGTGTAATTTGCGG+TGG | + | chr6_4:12045819-12045838 | Msa0977340:CDS | 50.0% |
| ATGTCCATGGTCGCAATGGA+GGG | - | chr6_4:12045917-12045936 | None:intergenic | 50.0% | |
| TCATGGAATGCGCAAGTGTC+TGG | + | chr6_4:12046019-12046038 | Msa0977340:three_prime_UTR | 50.0% | |
| CGAGTGGTTGCAACAGTGAG+TGG | + | chr6_4:12041659-12041678 | Msa0977340:CDS | 55.0% | |
| GCCCAACAATGTCAGCAAGG+TGG | - | chr6_4:12044616-12044635 | None:intergenic | 55.0% | |
| CATGTCCATGGTCGCAATGG+AGG | - | chr6_4:12045918-12045937 | None:intergenic | 55.0% | |
| GTGCATGTCCATGGTCGCAA+TGG | - | chr6_4:12045921-12045940 | None:intergenic | 55.0% | |
| ! | CGTTCCGGTGCCAGTTACGT+TGG | + | chr6_4:12041725-12041744 | Msa0977340:CDS | 60.0% |
| GACTTCAGTTCCGGGGTCTG+TGG | + | chr6_4:12043318-12043337 | Msa0977340:CDS | 60.0% | |
| CTCTGCGATCAACCCAACCC+TGG | - | chr6_4:12044380-12044399 | None:intergenic | 60.0% | |
| TGGACCCTCCATTGCGACCA+TGG | + | chr6_4:12045910-12045929 | Msa0977340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 12041635 | 12046376 | 12041635 | ID=Msa0977340;Name=Msa0977340 |
| chr6_4 | mRNA | 12041635 | 12046376 | 12041635 | ID=Msa0977340-mRNA-1;Parent=Msa0977340;Name=Msa0977340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|1|1|1|1|1|6|390|463 |
| chr6_4 | exon | 12041635 | 12041775 | 12041635 | ID=Msa0977340-mRNA-1:exon:4242;Parent=Msa0977340-mRNA-1 |
| chr6_4 | exon | 12042487 | 12042620 | 12042487 | ID=Msa0977340-mRNA-1:exon:4243;Parent=Msa0977340-mRNA-1 |
| chr6_4 | exon | 12043197 | 12043377 | 12043197 | ID=Msa0977340-mRNA-1:exon:4244;Parent=Msa0977340-mRNA-1 |
| chr6_4 | exon | 12043799 | 12044398 | 12043799 | ID=Msa0977340-mRNA-1:exon:4245;Parent=Msa0977340-mRNA-1 |
| chr6_4 | exon | 12045254 | 12045433 | 12045254 | ID=Msa0977340-mRNA-1:exon:4246;Parent=Msa0977340-mRNA-1 |
| chr6_4 | exon | 12045813 | 12046376 | 12045813 | ID=Msa0977340-mRNA-1:exon:4247;Parent=Msa0977340-mRNA-1 |
| chr6_4 | five_prime_UTR | 12041635 | 12041652 | 12041635 | ID=Msa0977340-mRNA-1:five_prime_utr;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12041653 | 12041775 | 12041653 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12042487 | 12042620 | 12042487 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12043197 | 12043377 | 12043197 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12043799 | 12044398 | 12043799 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12045254 | 12045433 | 12045254 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | CDS | 12045813 | 12045986 | 12045813 | ID=Msa0977340-mRNA-1:cds;Parent=Msa0977340-mRNA-1 |
| chr6_4 | three_prime_UTR | 12045987 | 12046376 | 12045987 | ID=Msa0977340-mRNA-1:three_prime_utr;Parent=Msa0977340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
