Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315600 | XP_003627467.1 | 94.322 | 317 | 17 | 1 | 3 | 318 | 5 | 321 | 0.0 | 552 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315600 | sp|Q9XF63|ATL3_ARATH | 40.064 | 312 | 144 | 6 | 14 | 302 | 11 | 302 | 1.58e-64 | 209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315600 | G7L9W6 | 94.322 | 317 | 17 | 1 | 3 | 318 | 5 | 321 | 0.0 | 552 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006110 | Msa1315600 | 0.812847 | 3.450094e-51 | -8.615850e-47 |
Msa0021510 | Msa1315600 | 0.803334 | 3.663048e-49 | -8.615850e-47 |
Msa0029240 | Msa1315600 | 0.800887 | 1.167034e-48 | -8.615850e-47 |
Msa0036140 | Msa1315600 | 0.810497 | 1.119521e-50 | -8.615850e-47 |
Msa0037570 | Msa1315600 | -0.807576 | 4.724666e-50 | -8.615850e-47 |
Msa0043980 | Msa1315600 | 0.804161 | 2.466736e-49 | -8.615850e-47 |
Msa0054480 | Msa1315600 | 0.810956 | 8.905939e-51 | -8.615850e-47 |
Msa0078900 | Msa1315600 | 0.813290 | 2.758478e-51 | -8.615850e-47 |
Msa0079070 | Msa1315600 | 0.808550 | 2.930790e-50 | -8.615850e-47 |
Msa0079130 | Msa1315600 | 0.803894 | 2.803452e-49 | -8.615850e-47 |
Msa0083280 | Msa1315600 | 0.802539 | 5.348121e-49 | -8.615850e-47 |
Msa0090570 | Msa1315600 | 0.803017 | 4.261364e-49 | -8.615850e-47 |
Msa0105070 | Msa1315600 | 0.803305 | 3.714742e-49 | -8.615850e-47 |
Msa0114060 | Msa1315600 | 0.804864 | 1.760523e-49 | -8.615850e-47 |
Msa0613440 | Msa1315600 | 0.800347 | 1.504180e-48 | -8.615850e-47 |
Msa0625720 | Msa1315600 | 0.804745 | 1.864211e-49 | -8.615850e-47 |
Msa0661650 | Msa1315600 | 0.826681 | 2.374424e-54 | -8.615850e-47 |
Msa0681250 | Msa1315600 | 0.819996 | 8.662064e-53 | -8.615850e-47 |
Msa0681270 | Msa1315600 | 0.815603 | 8.495920e-52 | -8.615850e-47 |
Msa0692040 | Msa1315600 | -0.802247 | 6.140903e-49 | -8.615850e-47 |
Msa0766630 | Msa1315600 | 0.801317 | 9.530750e-49 | -8.615850e-47 |
Msa0802830 | Msa1315600 | 0.800874 | 1.174315e-48 | -8.615850e-47 |
Msa0820850 | Msa1315600 | 0.817508 | 3.179739e-52 | -8.615850e-47 |
Msa0832340 | Msa1315600 | 0.806475 | 8.080229e-50 | -8.615850e-47 |
Msa0127800 | Msa1315600 | 0.818022 | 2.434459e-52 | -8.615850e-47 |
Msa0171540 | Msa1315600 | 0.814333 | 1.625132e-51 | -8.615850e-47 |
Msa0197660 | Msa1315600 | 0.801359 | 9.345765e-49 | -8.615850e-47 |
Msa1246510 | Msa1315600 | 0.804853 | 1.769452e-49 | -8.615850e-47 |
Msa1277660 | Msa1315600 | 0.821661 | 3.585975e-53 | -8.615850e-47 |
Msa1305810 | Msa1315600 | 0.802417 | 5.665630e-49 | -8.615850e-47 |
Msa1315600 | Msa1325860 | -0.803155 | 3.990181e-49 | -8.615850e-47 |
Msa1315600 | Msa1331000 | 0.801548 | 8.548155e-49 | -8.615850e-47 |
Msa1315600 | Msa1352280 | -0.810835 | 9.459136e-51 | -8.615850e-47 |
Msa1315600 | Msa1373030 | 0.819525 | 1.109525e-52 | -8.615850e-47 |
Msa1315600 | Msa1374470 | 0.803296 | 3.730398e-49 | -8.615850e-47 |
Msa1315600 | Msa1392240 | 0.808813 | 2.575838e-50 | -8.615850e-47 |
Msa1315600 | Msa1410680 | 0.808781 | 2.616260e-50 | -8.615850e-47 |
Msa1315600 | Msa1427230 | 0.800907 | 1.156324e-48 | -8.615850e-47 |
Msa1315600 | Msa1440560 | 0.819066 | 1.411441e-52 | -8.615850e-47 |
Msa1315600 | Msa1460050 | 0.806141 | 9.499073e-50 | -8.615850e-47 |
Msa1315600 | Msa1460830 | 0.810197 | 1.299206e-50 | -8.615850e-47 |
Msa1315600 | Msa1466540 | 0.818871 | 1.563400e-52 | -8.615850e-47 |
Msa0381610 | Msa1315600 | -0.803424 | 3.509643e-49 | -8.615850e-47 |
Msa0383800 | Msa1315600 | 0.810835 | 9.460598e-51 | -8.615850e-47 |
Msa0386090 | Msa1315600 | 0.805199 | 1.497847e-49 | -8.615850e-47 |
Msa0397750 | Msa1315600 | 0.800813 | 1.208544e-48 | -8.615850e-47 |
Msa0434180 | Msa1315600 | 0.817873 | 2.630944e-52 | -8.615850e-47 |
Msa0455760 | Msa1315600 | 0.816504 | 5.345748e-52 | -8.615850e-47 |
Msa0464100 | Msa1315600 | 0.809264 | 2.062434e-50 | -8.615850e-47 |
Msa0479340 | Msa1315600 | 0.808755 | 2.650399e-50 | -8.615850e-47 |
Msa1023950 | Msa1315600 | 0.801163 | 1.025128e-48 | -8.615850e-47 |
Msa1035480 | Msa1315600 | 0.802388 | 5.744839e-49 | -8.615850e-47 |
Msa1036610 | Msa1315600 | 0.816205 | 6.233795e-52 | -8.615850e-47 |
Msa1043130 | Msa1315600 | -0.804729 | 1.877948e-49 | -8.615850e-47 |
Msa1046460 | Msa1315600 | 0.807488 | 4.931938e-50 | -8.615850e-47 |
Msa1075650 | Msa1315600 | 0.813531 | 2.441789e-51 | -8.615850e-47 |
Msa1104090 | Msa1315600 | 0.800691 | 1.279738e-48 | -8.615850e-47 |
Msa0267370 | Msa1315600 | 0.809239 | 2.087198e-50 | -8.615850e-47 |
Msa0280090 | Msa1315600 | 0.808946 | 2.411541e-50 | -8.615850e-47 |
Msa0287410 | Msa1315600 | 0.815102 | 1.097751e-51 | -8.615850e-47 |
Msa0309770 | Msa1315600 | 0.800596 | 1.338477e-48 | -8.615850e-47 |
Msa0339620 | Msa1315600 | 0.803514 | 3.361565e-49 | -8.615850e-47 |
Msa0363790 | Msa1315600 | 0.804964 | 1.677371e-49 | -8.615850e-47 |
Msa1109680 | Msa1315600 | 0.806280 | 8.879752e-50 | -8.615850e-47 |
Msa1147740 | Msa1315600 | 0.804593 | 2.005556e-49 | -8.615850e-47 |
Msa1162780 | Msa1315600 | 0.819641 | 1.043806e-52 | -8.615850e-47 |
Msa1163090 | Msa1315600 | 0.804859 | 1.764839e-49 | -8.615850e-47 |
Msa1167340 | Msa1315600 | 0.807700 | 4.447929e-50 | -8.615850e-47 |
Msa1181250 | Msa1315600 | 0.820692 | 5.995837e-53 | -8.615850e-47 |
Msa1181330 | Msa1315600 | 0.809093 | 2.243886e-50 | -8.615850e-47 |
Msa1181910 | Msa1315600 | 0.806442 | 8.211165e-50 | -8.615850e-47 |
Msa0518380 | Msa1315600 | 0.800965 | 1.125010e-48 | -8.615850e-47 |
Msa0529890 | Msa1315600 | 0.808424 | 3.117973e-50 | -8.615850e-47 |
Msa0531180 | Msa1315600 | 0.803650 | 3.150834e-49 | -8.615850e-47 |
Msa0849030 | Msa1315600 | 0.805039 | 1.618317e-49 | -8.615850e-47 |
Msa0861130 | Msa1315600 | 0.812731 | 3.657929e-51 | -8.615850e-47 |
Msa0892080 | Msa1315600 | 0.803514 | 3.361737e-49 | -8.615850e-47 |
Msa0927380 | Msa1315600 | 0.800048 | 1.730192e-48 | -8.615850e-47 |
Msa0933100 | Msa1315600 | 0.817649 | 2.955890e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315600 | MtrunA17_Chr8g0345361 | 96.070 | 229 | 9 | 0 | 3 | 231 | 5 | 233 | 9.75e-159 | 443 |
Msa1315600 | MtrunA17_Chr7g0276591 | 40.800 | 250 | 113 | 5 | 15 | 260 | 12 | 230 | 4.63e-45 | 155 |
Msa1315600 | MtrunA17_Chr4g0067591 | 42.135 | 178 | 76 | 7 | 19 | 178 | 13 | 181 | 1.14e-31 | 119 |
Msa1315600 | MtrunA17_Chr2g0295571 | 36.571 | 175 | 94 | 5 | 17 | 179 | 23 | 192 | 2.24e-30 | 116 |
Msa1315600 | MtrunA17_Chr3g0105441 | 38.150 | 173 | 88 | 4 | 27 | 180 | 26 | 198 | 4.30e-23 | 96.3 |
Msa1315600 | MtrunA17_Chr5g0426781 | 29.808 | 208 | 139 | 5 | 27 | 229 | 63 | 268 | 6.81e-23 | 97.4 |
Msa1315600 | MtrunA17_Chr4g0059281 | 35.385 | 195 | 92 | 8 | 27 | 201 | 48 | 228 | 3.61e-22 | 94.7 |
Msa1315600 | MtrunA17_Chr5g0413841 | 35.507 | 138 | 80 | 4 | 29 | 158 | 49 | 185 | 4.22e-22 | 95.5 |
Msa1315600 | MtrunA17_Chr5g0430781 | 39.860 | 143 | 68 | 3 | 27 | 163 | 28 | 158 | 3.25e-21 | 90.1 |
Msa1315600 | MtrunA17_Chr8g0364881 | 32.639 | 144 | 72 | 4 | 28 | 157 | 4 | 136 | 1.04e-20 | 90.9 |
Msa1315600 | MtrunA17_Chr5g0407431 | 31.285 | 179 | 97 | 4 | 28 | 202 | 33 | 189 | 1.26e-20 | 88.6 |
Msa1315600 | MtrunA17_Chr4g0073141 | 38.793 | 116 | 62 | 3 | 44 | 157 | 78 | 186 | 1.60e-20 | 92.0 |
Msa1315600 | MtrunA17_Chr6g0486651 | 31.980 | 197 | 102 | 6 | 27 | 217 | 42 | 212 | 9.27e-20 | 89.0 |
Msa1315600 | MtrunA17_Chr4g0050041 | 32.584 | 178 | 107 | 4 | 30 | 194 | 58 | 235 | 1.14e-19 | 88.2 |
Msa1315600 | MtrunA17_Chr1g0203541 | 48.649 | 74 | 32 | 1 | 90 | 157 | 105 | 178 | 1.70e-19 | 85.1 |
Msa1315600 | MtrunA17_Chr2g0325161 | 36.306 | 157 | 85 | 3 | 12 | 160 | 19 | 168 | 3.64e-19 | 85.1 |
Msa1315600 | MtrunA17_Chr7g0273051 | 29.839 | 248 | 148 | 9 | 36 | 267 | 44 | 281 | 4.79e-19 | 86.7 |
Msa1315600 | MtrunA17_Chr3g0113811 | 31.210 | 157 | 89 | 5 | 17 | 168 | 17 | 159 | 6.43e-19 | 82.8 |
Msa1315600 | MtrunA17_Chr6g0451161 | 36.957 | 138 | 71 | 5 | 29 | 157 | 71 | 201 | 7.07e-19 | 86.3 |
Msa1315600 | MtrunA17_Chr3g0144241 | 44.737 | 76 | 42 | 0 | 90 | 165 | 79 | 154 | 7.77e-19 | 82.8 |
Msa1315600 | MtrunA17_Chr8g0383881 | 46.835 | 79 | 39 | 2 | 90 | 166 | 103 | 180 | 8.39e-19 | 83.6 |
Msa1315600 | MtrunA17_Chr8g0383861 | 46.835 | 79 | 39 | 2 | 90 | 166 | 113 | 190 | 8.55e-19 | 83.6 |
Msa1315600 | MtrunA17_Chr5g0427431 | 44.186 | 86 | 47 | 1 | 77 | 161 | 121 | 206 | 1.22e-18 | 85.9 |
Msa1315600 | MtrunA17_Chr1g0186661 | 33.824 | 136 | 75 | 4 | 36 | 164 | 53 | 180 | 1.30e-18 | 85.1 |
Msa1315600 | MtrunA17_Chr4g0030831 | 33.548 | 155 | 81 | 7 | 18 | 157 | 7 | 154 | 1.40e-18 | 81.6 |
Msa1315600 | MtrunA17_Chr8g0381731 | 36.792 | 106 | 56 | 2 | 89 | 193 | 147 | 242 | 1.73e-18 | 84.0 |
Msa1315600 | MtrunA17_Chr2g0325141 | 32.374 | 139 | 68 | 4 | 35 | 160 | 11 | 136 | 2.33e-18 | 80.5 |
Msa1315600 | MtrunA17_Chr5g0426881 | 35.971 | 139 | 67 | 5 | 26 | 157 | 62 | 185 | 2.48e-18 | 84.7 |
Msa1315600 | MtrunA17_Chr7g0244851 | 39.344 | 122 | 69 | 3 | 60 | 179 | 53 | 171 | 2.93e-18 | 80.9 |
Msa1315600 | MtrunA17_Chr1g0167811 | 35.461 | 141 | 79 | 5 | 30 | 162 | 34 | 170 | 3.36e-18 | 83.6 |
Msa1315600 | MtrunA17_Chr3g0128771 | 47.222 | 72 | 35 | 1 | 90 | 158 | 91 | 162 | 3.54e-18 | 80.9 |
Msa1315600 | MtrunA17_Chr8g0383941 | 41.935 | 93 | 50 | 3 | 76 | 166 | 94 | 184 | 4.36e-18 | 81.6 |
Msa1315600 | MtrunA17_Chr7g0246761 | 42.683 | 82 | 37 | 2 | 78 | 157 | 59 | 132 | 5.74e-18 | 80.5 |
Msa1315600 | MtrunA17_Chr3g0133001 | 48.000 | 75 | 38 | 1 | 90 | 163 | 130 | 204 | 9.25e-18 | 83.2 |
Msa1315600 | MtrunA17_Chr3g0123641 | 32.000 | 175 | 83 | 5 | 27 | 186 | 1 | 154 | 1.24e-17 | 80.5 |
Msa1315600 | MtrunA17_Chr2g0327791 | 42.308 | 104 | 48 | 3 | 60 | 160 | 86 | 180 | 1.36e-17 | 80.1 |
Msa1315600 | MtrunA17_Chr8g0383871 | 44.304 | 79 | 41 | 2 | 90 | 166 | 112 | 189 | 1.52e-17 | 80.1 |
Msa1315600 | MtrunA17_Chr7g0269491 | 37.857 | 140 | 67 | 5 | 68 | 203 | 47 | 170 | 1.74e-17 | 79.3 |
Msa1315600 | MtrunA17_Chr8g0383921 | 44.304 | 79 | 41 | 2 | 90 | 166 | 111 | 188 | 1.81e-17 | 79.7 |
Msa1315600 | MtrunA17_Chr1g0197031 | 32.593 | 135 | 80 | 3 | 29 | 158 | 17 | 145 | 1.93e-17 | 78.6 |
Msa1315600 | MtrunA17_Chr8g0370171 | 41.250 | 80 | 44 | 1 | 90 | 166 | 70 | 149 | 2.20e-17 | 79.3 |
Msa1315600 | MtrunA17_Chr3g0132491 | 35.915 | 142 | 68 | 7 | 26 | 160 | 57 | 182 | 2.98e-17 | 81.6 |
Msa1315600 | MtrunA17_Chr3g0123631 | 30.688 | 189 | 94 | 6 | 27 | 200 | 1 | 167 | 3.48e-17 | 78.2 |
Msa1315600 | MtrunA17_Chr5g0411081 | 31.387 | 137 | 89 | 3 | 28 | 160 | 58 | 193 | 3.69e-17 | 81.3 |
Msa1315600 | MtrunA17_Chr3g0129671 | 46.154 | 78 | 39 | 2 | 90 | 165 | 109 | 185 | 3.82e-17 | 79.0 |
Msa1315600 | MtrunA17_Chr3g0126931 | 40.230 | 87 | 46 | 2 | 79 | 164 | 95 | 176 | 4.62e-17 | 80.9 |
Msa1315600 | MtrunA17_Chr6g0470751 | 46.914 | 81 | 39 | 2 | 90 | 166 | 97 | 177 | 8.09e-17 | 79.7 |
Msa1315600 | MtrunA17_Chr2g0279431 | 43.038 | 79 | 44 | 1 | 80 | 157 | 125 | 203 | 1.02e-16 | 80.1 |
Msa1315600 | MtrunA17_Chr1g0191601 | 46.053 | 76 | 36 | 2 | 90 | 160 | 98 | 173 | 2.89e-16 | 78.6 |
Msa1315600 | MtrunA17_Chr4g0013561 | 46.479 | 71 | 34 | 3 | 89 | 157 | 84 | 152 | 4.25e-16 | 76.3 |
Msa1315600 | MtrunA17_Chr5g0437361 | 30.973 | 113 | 63 | 2 | 54 | 163 | 51 | 151 | 1.71e-15 | 73.2 |
Msa1315600 | MtrunA17_Chr8g0383931 | 52.830 | 53 | 24 | 1 | 114 | 166 | 140 | 191 | 2.33e-15 | 74.3 |
Msa1315600 | MtrunA17_Chr8g0383901 | 52.830 | 53 | 24 | 1 | 114 | 166 | 130 | 181 | 2.39e-15 | 73.9 |
Msa1315600 | MtrunA17_Chr2g0307411 | 47.059 | 68 | 34 | 1 | 90 | 157 | 77 | 142 | 2.60e-15 | 73.2 |
Msa1315600 | MtrunA17_Chr3g0143301 | 46.667 | 75 | 38 | 1 | 90 | 164 | 48 | 120 | 2.65e-15 | 71.6 |
Msa1315600 | MtrunA17_Chr1g0184171 | 41.892 | 74 | 41 | 1 | 90 | 161 | 103 | 176 | 3.23e-15 | 75.5 |
Msa1315600 | MtrunA17_Chr8g0350741 | 44.118 | 68 | 36 | 1 | 92 | 157 | 64 | 131 | 5.86e-15 | 72.0 |
Msa1315600 | MtrunA17_Chr1g0157091 | 41.463 | 82 | 46 | 1 | 90 | 171 | 48 | 127 | 5.98e-15 | 70.5 |
Msa1315600 | MtrunA17_Chr4g0052671 | 42.105 | 76 | 41 | 1 | 90 | 162 | 78 | 153 | 7.73e-15 | 70.9 |
Msa1315600 | MtrunA17_Chr1g0198201 | 29.412 | 136 | 85 | 3 | 24 | 157 | 4 | 130 | 1.32e-14 | 72.0 |
Msa1315600 | MtrunA17_Chr5g0409211 | 59.574 | 47 | 19 | 0 | 111 | 157 | 90 | 136 | 1.86e-14 | 70.5 |
Msa1315600 | MtrunA17_Chr6g0451051 | 28.859 | 149 | 80 | 3 | 29 | 176 | 4 | 127 | 2.30e-14 | 69.7 |
Msa1315600 | MtrunA17_Chr3g0081611 | 38.961 | 77 | 44 | 1 | 85 | 158 | 75 | 151 | 3.11e-14 | 69.7 |
Msa1315600 | MtrunA17_Chr8g0366561 | 46.667 | 75 | 37 | 2 | 89 | 160 | 113 | 187 | 3.42e-14 | 72.4 |
Msa1315600 | MtrunA17_Chr5g0426871 | 43.056 | 72 | 37 | 1 | 90 | 157 | 108 | 179 | 3.76e-14 | 72.4 |
Msa1315600 | MtrunA17_Chr7g0274741 | 38.667 | 75 | 38 | 2 | 90 | 158 | 70 | 142 | 8.04e-14 | 68.9 |
Msa1315600 | MtrunA17_Chr8g0366521 | 38.710 | 93 | 45 | 3 | 90 | 175 | 76 | 163 | 1.15e-13 | 70.5 |
Msa1315600 | MtrunA17_Chr5g0409201 | 56.250 | 48 | 21 | 0 | 111 | 158 | 89 | 136 | 1.16e-13 | 67.8 |
Msa1315600 | MtrunA17_Chr2g0297011 | 42.466 | 73 | 39 | 2 | 90 | 160 | 76 | 147 | 1.34e-13 | 67.8 |
Msa1315600 | MtrunA17_Chr1g0197021 | 27.660 | 141 | 95 | 1 | 19 | 159 | 10 | 143 | 1.97e-13 | 67.0 |
Msa1315600 | MtrunA17_Chr6g0451031 | 36.250 | 80 | 51 | 0 | 96 | 175 | 50 | 129 | 2.96e-13 | 65.9 |
Msa1315600 | MtrunA17_Chr4g0027761 | 41.096 | 73 | 41 | 2 | 90 | 162 | 100 | 170 | 4.90e-13 | 67.0 |
Msa1315600 | MtrunA17_Chr8g0345401 | 51.064 | 47 | 23 | 0 | 115 | 161 | 49 | 95 | 1.02e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr5g0433861 | 29.221 | 154 | 87 | 6 | 27 | 175 | 27 | 163 | 1.55e-12 | 67.0 |
Msa1315600 | MtrunA17_Chr7g0248841 | 35.897 | 78 | 41 | 2 | 90 | 160 | 74 | 149 | 1.65e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr7g0261091 | 29.452 | 146 | 78 | 7 | 27 | 161 | 15 | 146 | 1.69e-12 | 67.0 |
Msa1315600 | MtrunA17_Chr8g0345381 | 48.148 | 54 | 28 | 0 | 115 | 168 | 53 | 106 | 1.71e-12 | 64.3 |
Msa1315600 | MtrunA17_Chr7g0248831 | 35.616 | 73 | 44 | 1 | 89 | 158 | 79 | 151 | 1.82e-12 | 65.1 |
Msa1315600 | MtrunA17_Chr8g0369571 | 46.875 | 64 | 30 | 1 | 115 | 174 | 90 | 153 | 2.06e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr8g0369691 | 36.364 | 99 | 52 | 5 | 79 | 167 | 400 | 497 | 2.42e-12 | 67.4 |
Msa1315600 | MtrunA17_Chr7g0274711 | 38.356 | 73 | 41 | 2 | 90 | 158 | 67 | 139 | 2.49e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr3g0118061 | 36.000 | 75 | 45 | 1 | 87 | 158 | 73 | 147 | 3.11e-12 | 65.1 |
Msa1315600 | MtrunA17_Chr8g0348151 | 28.261 | 138 | 93 | 3 | 25 | 158 | 22 | 157 | 3.86e-12 | 64.3 |
Msa1315600 | MtrunA17_Chr1g0184631 | 38.356 | 73 | 41 | 2 | 90 | 158 | 68 | 140 | 4.34e-12 | 63.9 |
Msa1315600 | MtrunA17_Chr5g0406031 | 57.778 | 45 | 19 | 0 | 113 | 157 | 187 | 231 | 4.45e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr7g0274721 | 36.232 | 69 | 44 | 0 | 90 | 158 | 68 | 136 | 4.79e-12 | 63.5 |
Msa1315600 | MtrunA17_Chr8g0388201 | 51.111 | 45 | 22 | 0 | 115 | 159 | 347 | 391 | 5.04e-12 | 66.2 |
Msa1315600 | MtrunA17_Chr2g0300331 | 61.364 | 44 | 17 | 0 | 114 | 157 | 168 | 211 | 5.27e-12 | 64.7 |
Msa1315600 | MtrunA17_Chr7g0237871 | 45.902 | 61 | 31 | 1 | 103 | 161 | 144 | 204 | 6.47e-12 | 64.3 |
Msa1315600 | MtrunA17_Chr3g0118071 | 36.000 | 75 | 45 | 1 | 87 | 158 | 73 | 147 | 1.82e-11 | 62.8 |
Msa1315600 | MtrunA17_Chr4g0010171 | 52.000 | 50 | 24 | 0 | 112 | 161 | 110 | 159 | 2.03e-11 | 62.0 |
Msa1315600 | MtrunA17_Chr4g0060981 | 42.857 | 70 | 38 | 2 | 90 | 158 | 149 | 217 | 2.10e-11 | 62.8 |
Msa1315600 | MtrunA17_Chr5g0396611 | 53.333 | 45 | 21 | 0 | 115 | 159 | 340 | 384 | 3.86e-11 | 63.5 |
Msa1315600 | MtrunA17_Chr8g0336881 | 39.130 | 69 | 38 | 1 | 93 | 157 | 79 | 147 | 4.56e-11 | 62.8 |
Msa1315600 | MtrunA17_Chr3g0120011 | 44.444 | 72 | 36 | 3 | 88 | 157 | 92 | 161 | 4.91e-11 | 61.6 |
Msa1315600 | MtrunA17_Chr1g0200721 | 42.254 | 71 | 37 | 3 | 90 | 157 | 208 | 277 | 5.22e-11 | 63.2 |
Msa1315600 | MtrunA17_Chr5g0396601 | 53.333 | 45 | 21 | 0 | 115 | 159 | 350 | 394 | 5.72e-11 | 62.8 |
Msa1315600 | MtrunA17_Chr3g0124531 | 40.506 | 79 | 43 | 3 | 114 | 191 | 68 | 143 | 6.26e-11 | 60.1 |
Msa1315600 | MtrunA17_Chr2g0301871 | 53.191 | 47 | 22 | 0 | 114 | 160 | 82 | 128 | 6.48e-11 | 62.4 |
Msa1315600 | MtrunA17_Chr8g0343571 | 38.095 | 105 | 58 | 5 | 96 | 194 | 62 | 165 | 6.77e-11 | 60.1 |
Msa1315600 | MtrunA17_Chr7g0274731 | 35.294 | 68 | 44 | 0 | 90 | 157 | 89 | 156 | 9.85e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1315600 | AT1G72310.1 | 40.064 | 312 | 144 | 6 | 14 | 302 | 11 | 302 | 1.60e-65 | 209 |
Msa1315600 | AT1G53820.1 | 44.695 | 311 | 116 | 11 | 22 | 301 | 19 | 304 | 7.53e-65 | 207 |
Msa1315600 | AT3G16720.1 | 36.824 | 296 | 140 | 12 | 18 | 308 | 21 | 274 | 2.94e-42 | 148 |
Msa1315600 | AT3G62690.1 | 37.333 | 150 | 89 | 2 | 12 | 160 | 13 | 158 | 1.47e-26 | 105 |
Msa1315600 | AT4G15975.1 | 43.103 | 116 | 54 | 3 | 45 | 160 | 18 | 121 | 6.04e-25 | 100 |
Msa1315600 | AT3G14320.1 | 48.684 | 76 | 39 | 0 | 88 | 163 | 61 | 136 | 1.67e-23 | 96.3 |
Msa1315600 | AT1G23980.1 | 36.296 | 135 | 81 | 3 | 28 | 157 | 52 | 186 | 5.68e-23 | 98.2 |
Msa1315600 | AT5G17600.1 | 33.939 | 165 | 101 | 4 | 30 | 193 | 59 | 216 | 1.32e-22 | 97.1 |
Msa1315600 | AT2G42360.1 | 36.111 | 144 | 77 | 2 | 19 | 160 | 23 | 153 | 2.99e-22 | 93.6 |
Msa1315600 | AT5G05280.1 | 36.306 | 157 | 83 | 4 | 4 | 157 | 13 | 155 | 4.63e-22 | 91.7 |
Msa1315600 | AT1G49220.1 | 47.170 | 106 | 45 | 4 | 68 | 166 | 84 | 185 | 5.22e-22 | 93.2 |
Msa1315600 | AT2G47560.1 | 36.585 | 164 | 89 | 4 | 1 | 160 | 1 | 153 | 5.35e-22 | 92.8 |
Msa1315600 | AT2G20030.1 | 39.437 | 142 | 72 | 4 | 23 | 163 | 44 | 172 | 4.91e-21 | 92.8 |
Msa1315600 | AT1G04360.1 | 35.570 | 149 | 71 | 6 | 27 | 164 | 49 | 183 | 7.38e-21 | 92.4 |
Msa1315600 | AT3G18773.1 | 41.584 | 101 | 56 | 2 | 90 | 188 | 103 | 202 | 3.20e-20 | 87.8 |
Msa1315600 | AT3G48030.2 | 33.108 | 148 | 95 | 2 | 27 | 172 | 41 | 186 | 4.12e-20 | 88.6 |
Msa1315600 | AT1G20823.1 | 33.766 | 154 | 85 | 5 | 17 | 165 | 20 | 161 | 5.50e-20 | 86.7 |
Msa1315600 | AT4G40070.1 | 35.714 | 154 | 80 | 6 | 24 | 171 | 40 | 180 | 6.09e-20 | 89.0 |
Msa1315600 | AT3G48030.1 | 33.108 | 148 | 95 | 2 | 27 | 172 | 119 | 264 | 9.28e-20 | 89.0 |
Msa1315600 | AT1G49210.1 | 50.633 | 79 | 36 | 2 | 90 | 166 | 108 | 185 | 9.92e-20 | 86.7 |
Msa1315600 | AT1G49200.1 | 48.810 | 84 | 40 | 2 | 85 | 166 | 104 | 186 | 1.18e-19 | 86.3 |
Msa1315600 | AT5G05810.1 | 52.000 | 75 | 35 | 1 | 90 | 163 | 120 | 194 | 3.86e-19 | 87.8 |
Msa1315600 | AT5G43420.1 | 31.841 | 201 | 108 | 7 | 16 | 197 | 31 | 221 | 3.90e-19 | 87.4 |
Msa1315600 | AT1G76410.1 | 33.571 | 140 | 78 | 4 | 28 | 165 | 28 | 154 | 4.81e-19 | 83.6 |
Msa1315600 | AT3G10910.1 | 44.565 | 92 | 48 | 2 | 90 | 179 | 88 | 178 | 5.44e-19 | 83.6 |
Msa1315600 | AT2G35000.1 | 29.130 | 230 | 145 | 7 | 28 | 248 | 51 | 271 | 7.05e-19 | 86.7 |
Msa1315600 | AT4G28890.1 | 44.792 | 96 | 50 | 2 | 90 | 184 | 97 | 190 | 7.36e-19 | 87.0 |
Msa1315600 | AT3G19140.1 | 42.353 | 85 | 43 | 1 | 79 | 157 | 37 | 121 | 1.36e-18 | 81.3 |
Msa1315600 | AT4G30400.1 | 42.157 | 102 | 52 | 3 | 61 | 157 | 77 | 176 | 1.71e-18 | 86.3 |
Msa1315600 | AT5G40250.1 | 34.014 | 147 | 73 | 4 | 29 | 157 | 45 | 185 | 3.12e-18 | 84.7 |
Msa1315600 | AT4G33565.1 | 37.736 | 106 | 65 | 1 | 80 | 184 | 181 | 286 | 7.04e-18 | 83.6 |
Msa1315600 | AT1G72200.1 | 29.208 | 202 | 113 | 5 | 7 | 191 | 45 | 233 | 9.26e-18 | 83.6 |
Msa1315600 | AT4G10150.1 | 30.769 | 130 | 88 | 1 | 28 | 157 | 26 | 153 | 1.04e-17 | 81.3 |
Msa1315600 | AT3G03550.1 | 38.182 | 110 | 55 | 2 | 91 | 187 | 134 | 243 | 1.14e-17 | 82.8 |
Msa1315600 | AT5G10380.1 | 52.857 | 70 | 32 | 1 | 89 | 157 | 108 | 177 | 1.14e-17 | 82.4 |
Msa1315600 | AT5G01880.1 | 45.833 | 72 | 38 | 1 | 88 | 158 | 77 | 148 | 1.78e-17 | 78.6 |
Msa1315600 | AT2G18650.1 | 45.977 | 87 | 44 | 3 | 78 | 161 | 87 | 173 | 2.57e-17 | 82.4 |
Msa1315600 | AT4G17905.1 | 33.000 | 200 | 103 | 8 | 80 | 270 | 117 | 294 | 6.58e-17 | 80.1 |
Msa1315600 | AT2G27940.1 | 31.343 | 134 | 89 | 1 | 28 | 158 | 50 | 183 | 7.97e-17 | 79.0 |
Msa1315600 | AT4G17905.2 | 33.000 | 200 | 103 | 8 | 80 | 270 | 143 | 320 | 9.27e-17 | 80.1 |
Msa1315600 | AT3G05200.1 | 37.500 | 104 | 56 | 3 | 90 | 184 | 99 | 202 | 9.75e-17 | 80.5 |
Msa1315600 | AT1G33480.1 | 40.698 | 86 | 48 | 1 | 72 | 157 | 60 | 142 | 1.46e-16 | 78.6 |
Msa1315600 | AT4G10160.1 | 42.857 | 70 | 40 | 0 | 88 | 157 | 70 | 139 | 1.48e-16 | 77.8 |
Msa1315600 | AT4G09110.1 | 32.374 | 139 | 72 | 3 | 29 | 163 | 51 | 171 | 1.53e-16 | 79.0 |
Msa1315600 | AT2G17450.1 | 38.938 | 113 | 56 | 3 | 71 | 175 | 55 | 162 | 1.70e-16 | 76.6 |
Msa1315600 | AT1G72220.1 | 29.861 | 144 | 94 | 3 | 21 | 162 | 86 | 224 | 2.19e-16 | 79.7 |
Msa1315600 | AT5G42200.1 | 31.544 | 149 | 80 | 4 | 15 | 157 | 14 | 146 | 2.34e-16 | 75.9 |
Msa1315600 | AT4G09120.1 | 38.144 | 97 | 55 | 2 | 71 | 163 | 76 | 171 | 2.59e-16 | 79.0 |
Msa1315600 | AT2G35420.1 | 32.812 | 128 | 76 | 4 | 33 | 157 | 25 | 145 | 2.74e-16 | 77.8 |
Msa1315600 | AT1G49230.1 | 40.659 | 91 | 51 | 2 | 90 | 178 | 104 | 193 | 3.98e-16 | 76.6 |
Msa1315600 | AT2G42350.1 | 30.496 | 141 | 82 | 1 | 17 | 157 | 18 | 142 | 7.39e-16 | 75.5 |
Msa1315600 | AT5G57750.1 | 30.464 | 151 | 86 | 5 | 17 | 158 | 25 | 165 | 8.36e-16 | 75.5 |
Msa1315600 | AT2G34990.2 | 43.056 | 72 | 37 | 1 | 90 | 157 | 89 | 160 | 1.06e-15 | 77.0 |
Msa1315600 | AT2G34990.1 | 43.056 | 72 | 37 | 1 | 90 | 157 | 67 | 138 | 1.23e-15 | 76.6 |
Msa1315600 | AT4G09130.1 | 37.363 | 91 | 53 | 2 | 78 | 164 | 79 | 169 | 2.40e-15 | 76.3 |
Msa1315600 | AT1G32361.1 | 36.364 | 99 | 56 | 3 | 65 | 163 | 111 | 202 | 2.44e-15 | 75.9 |
Msa1315600 | AT1G74410.1 | 42.500 | 80 | 44 | 2 | 83 | 160 | 142 | 221 | 3.68e-15 | 73.9 |
Msa1315600 | AT5G27420.1 | 40.244 | 82 | 45 | 2 | 90 | 167 | 95 | 176 | 3.96e-15 | 75.9 |
Msa1315600 | AT5G46650.1 | 35.211 | 142 | 71 | 7 | 28 | 157 | 25 | 157 | 5.14e-15 | 74.7 |
Msa1315600 | AT5G07040.1 | 39.189 | 74 | 42 | 1 | 88 | 158 | 64 | 137 | 9.68e-15 | 71.2 |
Msa1315600 | AT4G17920.1 | 39.394 | 99 | 55 | 2 | 90 | 184 | 81 | 178 | 1.51e-14 | 73.2 |
Msa1315600 | AT3G18930.2 | 36.559 | 93 | 47 | 2 | 80 | 160 | 109 | 201 | 2.01e-14 | 73.9 |
Msa1315600 | AT3G18930.3 | 36.559 | 93 | 47 | 2 | 80 | 160 | 109 | 201 | 2.01e-14 | 73.9 |
Msa1315600 | AT3G18930.1 | 36.559 | 93 | 47 | 2 | 80 | 160 | 109 | 201 | 2.01e-14 | 73.9 |
Msa1315600 | AT5G58580.1 | 39.286 | 112 | 60 | 3 | 90 | 193 | 111 | 222 | 6.28e-14 | 71.6 |
Msa1315600 | AT1G22500.1 | 39.130 | 92 | 51 | 2 | 76 | 162 | 75 | 166 | 1.17e-13 | 71.2 |
Msa1315600 | AT3G11110.1 | 30.667 | 150 | 87 | 3 | 17 | 164 | 22 | 156 | 1.68e-13 | 67.8 |
Msa1315600 | AT1G35330.1 | 41.667 | 72 | 38 | 1 | 90 | 157 | 100 | 171 | 1.78e-13 | 70.5 |
Msa1315600 | AT4G09100.1 | 42.667 | 75 | 39 | 1 | 90 | 160 | 56 | 130 | 2.31e-13 | 66.6 |
Msa1315600 | AT3G61550.1 | 26.250 | 160 | 85 | 5 | 25 | 158 | 27 | 179 | 6.81e-13 | 67.4 |
Msa1315600 | AT4G24015.1 | 44.737 | 76 | 39 | 2 | 102 | 175 | 91 | 165 | 1.16e-12 | 65.9 |
Msa1315600 | AT5G66160.1 | 34.286 | 140 | 61 | 6 | 29 | 164 | 169 | 281 | 1.29e-12 | 67.8 |
Msa1315600 | AT3G60220.1 | 38.372 | 86 | 46 | 2 | 80 | 158 | 75 | 160 | 1.58e-12 | 67.8 |
Msa1315600 | AT2G46493.1 | 45.833 | 48 | 26 | 0 | 111 | 158 | 134 | 181 | 2.03e-12 | 65.5 |
Msa1315600 | AT4G35480.1 | 38.889 | 72 | 44 | 0 | 108 | 179 | 106 | 177 | 2.22e-12 | 65.5 |
Msa1315600 | AT5G66160.2 | 34.286 | 140 | 61 | 6 | 29 | 164 | 169 | 281 | 2.77e-12 | 66.6 |
Msa1315600 | AT2G46160.1 | 30.612 | 98 | 57 | 2 | 72 | 158 | 84 | 181 | 2.82e-12 | 65.5 |
Msa1315600 | AT2G46160.2 | 30.612 | 98 | 57 | 2 | 72 | 158 | 84 | 181 | 2.82e-12 | 65.5 |
Msa1315600 | AT1G71980.1 | 36.782 | 87 | 51 | 3 | 90 | 173 | 205 | 290 | 4.87e-12 | 66.6 |
Msa1315600 | AT5G06490.1 | 34.615 | 78 | 43 | 1 | 89 | 158 | 95 | 172 | 5.76e-12 | 64.3 |
Msa1315600 | AT2G44578.1 | 58.140 | 43 | 18 | 0 | 115 | 157 | 70 | 112 | 6.42e-12 | 62.8 |
Msa1315600 | AT2G46494.1 | 47.917 | 48 | 25 | 0 | 111 | 158 | 312 | 359 | 8.64e-12 | 65.9 |
Msa1315600 | AT5G66070.5 | 54.348 | 46 | 21 | 0 | 113 | 158 | 174 | 219 | 8.68e-12 | 64.3 |
Msa1315600 | AT5G66070.1 | 54.348 | 46 | 21 | 0 | 113 | 158 | 174 | 219 | 8.68e-12 | 64.3 |
Msa1315600 | AT5G66070.2 | 55.556 | 45 | 20 | 0 | 113 | 157 | 198 | 242 | 1.43e-11 | 63.9 |
Msa1315600 | AT5G47610.1 | 41.270 | 63 | 35 | 1 | 100 | 160 | 90 | 152 | 2.23e-11 | 62.0 |
Msa1315600 | AT2G17730.1 | 40.278 | 72 | 39 | 1 | 90 | 157 | 167 | 238 | 2.24e-11 | 63.2 |
Msa1315600 | AT5G53110.1 | 36.735 | 98 | 54 | 3 | 69 | 158 | 276 | 373 | 2.42e-11 | 64.3 |
Msa1315600 | AT1G28040.1 | 45.833 | 48 | 26 | 0 | 111 | 158 | 249 | 296 | 2.51e-11 | 63.9 |
Msa1315600 | AT4G30370.1 | 38.889 | 72 | 43 | 1 | 90 | 160 | 89 | 160 | 5.16e-11 | 61.2 |
Msa1315600 | AT3G60966.1 | 60.465 | 43 | 17 | 0 | 115 | 157 | 62 | 104 | 7.02e-11 | 59.7 |
Msa1315600 | AT2G44581.1 | 53.488 | 43 | 20 | 0 | 115 | 157 | 70 | 112 | 7.80e-11 | 59.7 |
Msa1315600 | AT3G20395.1 | 36.111 | 72 | 45 | 1 | 90 | 161 | 147 | 217 | 8.03e-11 | 61.6 |
Msa1315600 | AT2G46495.1 | 45.833 | 48 | 26 | 0 | 111 | 158 | 316 | 363 | 9.76e-11 | 62.8 |
Msa1315600 | AT2G46495.2 | 45.833 | 48 | 26 | 0 | 111 | 158 | 288 | 335 | 9.99e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCAAGATCCTGTTGTTTA+TGG | 0.168039 | 8_4:-15073933 | Msa1315600:CDS |
CCATTTGAATCAGTACTATT+TGG | 0.192512 | 8_4:+15073666 | None:intergenic |
TCTTAAGTCTTTGCCTGTTT+TGG | 0.218884 | 8_4:-15073880 | Msa1315600:CDS |
TGAAACCCATGATTGCATTT+TGG | 0.226368 | 8_4:+15073771 | None:intergenic |
CGTCGACGACGGCGGTTTCT+TGG | 0.237232 | 8_4:+15073975 | None:intergenic |
ATTCTACTTGTCCTCTTTGT+AGG | 0.257676 | 8_4:-15073716 | Msa1315600:CDS |
ATTTATATGCAAAGTGGTTT+TGG | 0.278266 | 8_4:-15074028 | Msa1315600:CDS |
TCCTTCAACTCCAAGTTCTA+TGG | 0.291895 | 8_4:-15073253 | Msa1315600:CDS |
AAATTTCCCTACAAATGTTT+TGG | 0.305638 | 8_4:-15073574 | Msa1315600:CDS |
GTTTATGGAAGTCACCAAAT+TGG | 0.322819 | 8_4:-15073918 | Msa1315600:CDS |
ACATCATCATCATCTACTTT+AGG | 0.335783 | 8_4:-15073468 | Msa1315600:CDS |
TGAGGATTTCAAAGATGGTT+TGG | 0.341504 | 8_4:-15073847 | Msa1315600:CDS |
ACACAAGTTAGTTCTTCTTT+TGG | 0.347982 | 8_4:-15073534 | Msa1315600:CDS |
AAAGGGTCAGGTGATGTATT+AGG | 0.362982 | 8_4:-15074140 | Msa1315600:CDS |
CAAGATTGAGATCATTTAAG+AGG | 0.369842 | 8_4:-15073302 | Msa1315600:CDS |
AGTAATAGATGCAATGGAAA+TGG | 0.383393 | 8_4:-15073429 | Msa1315600:CDS |
CCCCAAACCAAAACATTTGT+AGG | 0.395435 | 8_4:+15073567 | None:intergenic |
TCTAATACAGTTGAAATAAC+AGG | 0.400393 | 8_4:-15074113 | Msa1315600:CDS |
GCAACTGCAACTGCAACAAA+AGG | 0.404413 | 8_4:-15074158 | Msa1315600:CDS |
TCTACTTTAGGTAGTGATAA+TGG | 0.408867 | 8_4:-15073456 | Msa1315600:CDS |
TGTCTTTGTGATGTTGTTGA+AGG | 0.438454 | 8_4:-15073813 | Msa1315600:CDS |
TCCATAGAACTTGGAGTTGA+AGG | 0.444903 | 8_4:+15073252 | None:intergenic |
ATTTAGATTGTATTGATATG+TGG | 0.449698 | 8_4:-15073749 | Msa1315600:CDS |
TGGTGACTTCCATAAACAAC+AGG | 0.454316 | 8_4:+15073924 | None:intergenic |
CGACGGCGGTTTCTTGGTTG+AGG | 0.455007 | 8_4:+15073981 | None:intergenic |
TTTGGTGTTTCTTTGGAAGA+AGG | 0.471878 | 8_4:-15073516 | Msa1315600:CDS |
TGTTCCACATCCATAGAACT+TGG | 0.475183 | 8_4:+15073243 | None:intergenic |
AACTCCAAGTTCTATGGATG+TGG | 0.479911 | 8_4:-15073247 | Msa1315600:CDS |
GAGGAAGAACTAAACTCTCT+TGG | 0.492277 | 8_4:+15073381 | None:intergenic |
GGTAATAGTAATAGATGCAA+TGG | 0.506680 | 8_4:-15073435 | Msa1315600:CDS |
CCAAATAGTACTGATTCAAA+TGG | 0.506743 | 8_4:-15073666 | Msa1315600:CDS |
GTCACTAGCACTATTAGCTC+TGG | 0.507539 | 8_4:+15073217 | None:intergenic |
AAACAAACCGCCGTCGACGA+CGG | 0.534947 | 8_4:+15073964 | None:intergenic |
CCCAAACCAAAACATTTGTA+GGG | 0.536138 | 8_4:+15073568 | None:intergenic |
TGCTTCATTTATATGCAAAG+TGG | 0.539115 | 8_4:-15074034 | Msa1315600:CDS |
GCAACTGCAACAAAAGGGTC+AGG | 0.546145 | 8_4:-15074152 | Msa1315600:CDS |
CAACTGCAACTGCAACAAAA+GGG | 0.562538 | 8_4:-15074157 | Msa1315600:CDS |
GATCTCAATCTTGTTGCCAT+TGG | 0.564352 | 8_4:+15073312 | None:intergenic |
GAAACTAAATTCCTACAAAG+AGG | 0.564972 | 8_4:+15073705 | None:intergenic |
ATGCAATGGAAATGGAATGT+TGG | 0.570708 | 8_4:-15073421 | Msa1315600:CDS |
CAAGAAACCGCCGTCGTCGA+CGG | 0.576823 | 8_4:-15073974 | Msa1315600:CDS |
AGTTCTATGGATGTGGAACA+AGG | 0.581073 | 8_4:-15073240 | Msa1315600:CDS |
GAACTAAACTCTCTTGGCAA+TGG | 0.586066 | 8_4:+15073387 | None:intergenic |
GAAAATTTGAGTCATGTGAA+TGG | 0.596814 | 8_4:-15073609 | Msa1315600:CDS |
AGATGAAATGAAATCACCAA+TGG | 0.606642 | 8_4:-15073328 | Msa1315600:CDS |
TCAACACAGCTATTATCAGA+AGG | 0.635451 | 8_4:+15073351 | None:intergenic |
CAAACCGCCGTCGACGACGG+CGG | 0.650391 | 8_4:+15073967 | None:intergenic |
GAAACCGCCGTCGTCGACGG+CGG | 0.652134 | 8_4:-15073971 | Msa1315600:CDS |
ATTATCAGAAGGTGACAATG+AGG | 0.653561 | 8_4:+15073362 | None:intergenic |
TAAACAACAGGATCTTGACC+AGG | 0.667684 | 8_4:+15073936 | None:intergenic |
AATGTGTTAGTGTCATCAGA+AGG | 0.695473 | 8_4:-15073633 | Msa1315600:CDS |
GATGATGATGATGTTGAACA+AGG | 0.699539 | 8_4:+15073477 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGCAATAATTTTTCTATTCA+TGG | - | chr8_4:15073319-15073338 | Msa1315600:CDS | 20.0% |
!!! | ATTTAGATTGTATTGATATG+TGG | - | chr8_4:15073645-15073664 | Msa1315600:CDS | 20.0% |
!!! | AGCAATAATTTTTCTATTCA+TGG | - | chr8_4:15073319-15073338 | Msa1315600:CDS | 20.0% |
!!! | ATTTAGATTGTATTGATATG+TGG | - | chr8_4:15073645-15073664 | Msa1315600:CDS | 20.0% |
! | TCTAATACAGTTGAAATAAC+AGG | - | chr8_4:15073281-15073300 | Msa1315600:CDS | 25.0% |
! | TGAAATAACAGGAAAAATCA+TGG | - | chr8_4:15073292-15073311 | Msa1315600:CDS | 25.0% |
!! | ATTTATATGCAAAGTGGTTT+TGG | - | chr8_4:15073366-15073385 | Msa1315600:CDS | 25.0% |
!!! | TCATTTTTGAAAACCAAAAC+AGG | + | chr8_4:15073530-15073549 | None:intergenic | 25.0% |
!!! | TGTTTTGGTTTTCAAAAATG+AGG | - | chr8_4:15073529-15073548 | Msa1315600:CDS | 25.0% |
! | AAAAATGAGGATTTCAAAGA+TGG | - | chr8_4:15073542-15073561 | Msa1315600:CDS | 25.0% |
!! | TTTTACCAAAATGCAATCAT+GGG | - | chr8_4:15073618-15073637 | Msa1315600:CDS | 25.0% |
!! | AAATTTCCCTACAAATGTTT+TGG | - | chr8_4:15073820-15073839 | Msa1315600:CDS | 25.0% |
! | TCTAATACAGTTGAAATAAC+AGG | - | chr8_4:15073281-15073300 | Msa1315600:CDS | 25.0% |
! | TGAAATAACAGGAAAAATCA+TGG | - | chr8_4:15073292-15073311 | Msa1315600:CDS | 25.0% |
!! | ATTTATATGCAAAGTGGTTT+TGG | - | chr8_4:15073366-15073385 | Msa1315600:CDS | 25.0% |
!!! | TCATTTTTGAAAACCAAAAC+AGG | + | chr8_4:15073530-15073549 | None:intergenic | 25.0% |
!!! | TGTTTTGGTTTTCAAAAATG+AGG | - | chr8_4:15073529-15073548 | Msa1315600:CDS | 25.0% |
! | AAAAATGAGGATTTCAAAGA+TGG | - | chr8_4:15073542-15073561 | Msa1315600:CDS | 25.0% |
!! | TTTTACCAAAATGCAATCAT+GGG | - | chr8_4:15073618-15073637 | Msa1315600:CDS | 25.0% |
!! | AAATTTCCCTACAAATGTTT+TGG | - | chr8_4:15073820-15073839 | Msa1315600:CDS | 25.0% |
TGCTTCATTTATATGCAAAG+TGG | - | chr8_4:15073360-15073379 | Msa1315600:CDS | 30.0% | |
!!! | TTTTAGGTTCAAGTCCAATT+TGG | + | chr8_4:15073493-15073512 | None:intergenic | 30.0% |
! | GGCAAAGACTTAAGAATTTT+AGG | + | chr8_4:15073509-15073528 | None:intergenic | 30.0% |
! | CTTTTACCAAAATGCAATCA+TGG | - | chr8_4:15073617-15073636 | Msa1315600:CDS | 30.0% |
GAAACTAAATTCCTACAAAG+AGG | + | chr8_4:15073692-15073711 | None:intergenic | 30.0% | |
CCATTTGAATCAGTACTATT+TGG | + | chr8_4:15073731-15073750 | None:intergenic | 30.0% | |
!! | CCAAATAGTACTGATTCAAA+TGG | - | chr8_4:15073728-15073747 | Msa1315600:CDS | 30.0% |
GAAAATTTGAGTCATGTGAA+TGG | - | chr8_4:15073785-15073804 | Msa1315600:CDS | 30.0% | |
!! | ACACAAGTTAGTTCTTCTTT+TGG | - | chr8_4:15073860-15073879 | Msa1315600:CDS | 30.0% |
!!! | TTCTTCTTTTGGTGTTTCTT+TGG | - | chr8_4:15073871-15073890 | Msa1315600:CDS | 30.0% |
ACATCATCATCATCTACTTT+AGG | - | chr8_4:15073926-15073945 | Msa1315600:CDS | 30.0% | |
TCTACTTTAGGTAGTGATAA+TGG | - | chr8_4:15073938-15073957 | Msa1315600:CDS | 30.0% | |
GGTAATAGTAATAGATGCAA+TGG | - | chr8_4:15073959-15073978 | Msa1315600:CDS | 30.0% | |
AGTAATAGATGCAATGGAAA+TGG | - | chr8_4:15073965-15073984 | Msa1315600:CDS | 30.0% | |
AGATGAAATGAAATCACCAA+TGG | - | chr8_4:15074066-15074085 | Msa1315600:CDS | 30.0% | |
CAAGATTGAGATCATTTAAG+AGG | - | chr8_4:15074092-15074111 | Msa1315600:CDS | 30.0% | |
TGCTTCATTTATATGCAAAG+TGG | - | chr8_4:15073360-15073379 | Msa1315600:CDS | 30.0% | |
!!! | TTTTAGGTTCAAGTCCAATT+TGG | + | chr8_4:15073493-15073512 | None:intergenic | 30.0% |
! | GGCAAAGACTTAAGAATTTT+AGG | + | chr8_4:15073509-15073528 | None:intergenic | 30.0% |
! | CTTTTACCAAAATGCAATCA+TGG | - | chr8_4:15073617-15073636 | Msa1315600:CDS | 30.0% |
GAAACTAAATTCCTACAAAG+AGG | + | chr8_4:15073692-15073711 | None:intergenic | 30.0% | |
CCATTTGAATCAGTACTATT+TGG | + | chr8_4:15073731-15073750 | None:intergenic | 30.0% | |
!! | CCAAATAGTACTGATTCAAA+TGG | - | chr8_4:15073728-15073747 | Msa1315600:CDS | 30.0% |
GAAAATTTGAGTCATGTGAA+TGG | - | chr8_4:15073785-15073804 | Msa1315600:CDS | 30.0% | |
!! | ACACAAGTTAGTTCTTCTTT+TGG | - | chr8_4:15073860-15073879 | Msa1315600:CDS | 30.0% |
!!! | TTCTTCTTTTGGTGTTTCTT+TGG | - | chr8_4:15073871-15073890 | Msa1315600:CDS | 30.0% |
ACATCATCATCATCTACTTT+AGG | - | chr8_4:15073926-15073945 | Msa1315600:CDS | 30.0% | |
TCTACTTTAGGTAGTGATAA+TGG | - | chr8_4:15073938-15073957 | Msa1315600:CDS | 30.0% | |
GGTAATAGTAATAGATGCAA+TGG | - | chr8_4:15073959-15073978 | Msa1315600:CDS | 30.0% | |
AGTAATAGATGCAATGGAAA+TGG | - | chr8_4:15073965-15073984 | Msa1315600:CDS | 30.0% | |
AGATGAAATGAAATCACCAA+TGG | - | chr8_4:15074066-15074085 | Msa1315600:CDS | 30.0% | |
CAAGATTGAGATCATTTAAG+AGG | - | chr8_4:15074092-15074111 | Msa1315600:CDS | 30.0% | |
!!! | TATATGCAAAGTGGTTTTGG+TGG | - | chr8_4:15073369-15073388 | Msa1315600:CDS | 35.0% |
GTTTATGGAAGTCACCAAAT+TGG | - | chr8_4:15073476-15073495 | Msa1315600:CDS | 35.0% | |
! | TCTTAAGTCTTTGCCTGTTT+TGG | - | chr8_4:15073514-15073533 | Msa1315600:CDS | 35.0% |
TGAGGATTTCAAAGATGGTT+TGG | - | chr8_4:15073547-15073566 | Msa1315600:CDS | 35.0% | |
TGTCTTTGTGATGTTGTTGA+AGG | - | chr8_4:15073581-15073600 | Msa1315600:CDS | 35.0% | |
! | TGAAACCCATGATTGCATTT+TGG | + | chr8_4:15073626-15073645 | None:intergenic | 35.0% |
ATTCTACTTGTCCTCTTTGT+AGG | - | chr8_4:15073678-15073697 | Msa1315600:CDS | 35.0% | |
AATGTGTTAGTGTCATCAGA+AGG | - | chr8_4:15073761-15073780 | Msa1315600:CDS | 35.0% | |
!!! | TCCCTACAAATGTTTTGGTT+TGG | - | chr8_4:15073825-15073844 | Msa1315600:CDS | 35.0% |
CCCAAACCAAAACATTTGTA+GGG | + | chr8_4:15073829-15073848 | None:intergenic | 35.0% | |
!!! | CCCTACAAATGTTTTGGTTT+GGG | - | chr8_4:15073826-15073845 | Msa1315600:CDS | 35.0% |
!!! | CCTACAAATGTTTTGGTTTG+GGG | - | chr8_4:15073827-15073846 | Msa1315600:CDS | 35.0% |
!!! | CTACAAATGTTTTGGTTTGG+GGG | - | chr8_4:15073828-15073847 | Msa1315600:CDS | 35.0% |
!! | TTTGGTGTTTCTTTGGAAGA+AGG | - | chr8_4:15073878-15073897 | Msa1315600:CDS | 35.0% |
! | GATGATGATGATGTTGAACA+AGG | + | chr8_4:15073920-15073939 | None:intergenic | 35.0% |
ATGCAATGGAAATGGAATGT+TGG | - | chr8_4:15073973-15073992 | Msa1315600:CDS | 35.0% | |
ATTATCAGAAGGTGACAATG+AGG | + | chr8_4:15074035-15074054 | None:intergenic | 35.0% | |
TCAACACAGCTATTATCAGA+AGG | + | chr8_4:15074046-15074065 | None:intergenic | 35.0% | |
!!! | TATATGCAAAGTGGTTTTGG+TGG | - | chr8_4:15073369-15073388 | Msa1315600:CDS | 35.0% |
GTTTATGGAAGTCACCAAAT+TGG | - | chr8_4:15073476-15073495 | Msa1315600:CDS | 35.0% | |
! | TCTTAAGTCTTTGCCTGTTT+TGG | - | chr8_4:15073514-15073533 | Msa1315600:CDS | 35.0% |
TGAGGATTTCAAAGATGGTT+TGG | - | chr8_4:15073547-15073566 | Msa1315600:CDS | 35.0% | |
TGTCTTTGTGATGTTGTTGA+AGG | - | chr8_4:15073581-15073600 | Msa1315600:CDS | 35.0% | |
! | TGAAACCCATGATTGCATTT+TGG | + | chr8_4:15073626-15073645 | None:intergenic | 35.0% |
ATTCTACTTGTCCTCTTTGT+AGG | - | chr8_4:15073678-15073697 | Msa1315600:CDS | 35.0% | |
AATGTGTTAGTGTCATCAGA+AGG | - | chr8_4:15073761-15073780 | Msa1315600:CDS | 35.0% | |
!!! | TCCCTACAAATGTTTTGGTT+TGG | - | chr8_4:15073825-15073844 | Msa1315600:CDS | 35.0% |
CCCAAACCAAAACATTTGTA+GGG | + | chr8_4:15073829-15073848 | None:intergenic | 35.0% | |
!!! | CCCTACAAATGTTTTGGTTT+GGG | - | chr8_4:15073826-15073845 | Msa1315600:CDS | 35.0% |
!!! | CCTACAAATGTTTTGGTTTG+GGG | - | chr8_4:15073827-15073846 | Msa1315600:CDS | 35.0% |
!!! | CTACAAATGTTTTGGTTTGG+GGG | - | chr8_4:15073828-15073847 | Msa1315600:CDS | 35.0% |
!! | TTTGGTGTTTCTTTGGAAGA+AGG | - | chr8_4:15073878-15073897 | Msa1315600:CDS | 35.0% |
! | GATGATGATGATGTTGAACA+AGG | + | chr8_4:15073920-15073939 | None:intergenic | 35.0% |
ATGCAATGGAAATGGAATGT+TGG | - | chr8_4:15073973-15073992 | Msa1315600:CDS | 35.0% | |
ATTATCAGAAGGTGACAATG+AGG | + | chr8_4:15074035-15074054 | None:intergenic | 35.0% | |
TCAACACAGCTATTATCAGA+AGG | + | chr8_4:15074046-15074065 | None:intergenic | 35.0% | |
CAACTGCAACTGCAACAAAA+GGG | - | chr8_4:15073237-15073256 | Msa1315600:CDS | 40.0% | |
AAAGGGTCAGGTGATGTATT+AGG | - | chr8_4:15073254-15073273 | Msa1315600:CDS | 40.0% | |
TAAACAACAGGATCTTGACC+AGG | + | chr8_4:15073461-15073480 | None:intergenic | 40.0% | |
! | GGTCAAGATCCTGTTGTTTA+TGG | - | chr8_4:15073461-15073480 | Msa1315600:CDS | 40.0% |
TGGTGACTTCCATAAACAAC+AGG | + | chr8_4:15073473-15073492 | None:intergenic | 40.0% | |
CCCCAAACCAAAACATTTGT+AGG | + | chr8_4:15073830-15073849 | None:intergenic | 40.0% | |
GAACTAAACTCTCTTGGCAA+TGG | + | chr8_4:15074010-15074029 | None:intergenic | 40.0% | |
GAGGAAGAACTAAACTCTCT+TGG | + | chr8_4:15074016-15074035 | None:intergenic | 40.0% | |
GATCTCAATCTTGTTGCCAT+TGG | + | chr8_4:15074085-15074104 | None:intergenic | 40.0% | |
TCCTTCAACTCCAAGTTCTA+TGG | - | chr8_4:15074141-15074160 | Msa1315600:CDS | 40.0% | |
TCCATAGAACTTGGAGTTGA+AGG | + | chr8_4:15074145-15074164 | None:intergenic | 40.0% | |
AACTCCAAGTTCTATGGATG+TGG | - | chr8_4:15074147-15074166 | Msa1315600:CDS | 40.0% | |
TGTTCCACATCCATAGAACT+TGG | + | chr8_4:15074154-15074173 | None:intergenic | 40.0% | |
AGTTCTATGGATGTGGAACA+AGG | - | chr8_4:15074154-15074173 | Msa1315600:CDS | 40.0% | |
CAACTGCAACTGCAACAAAA+GGG | - | chr8_4:15073237-15073256 | Msa1315600:CDS | 40.0% | |
AAAGGGTCAGGTGATGTATT+AGG | - | chr8_4:15073254-15073273 | Msa1315600:CDS | 40.0% | |
TAAACAACAGGATCTTGACC+AGG | + | chr8_4:15073461-15073480 | None:intergenic | 40.0% | |
! | GGTCAAGATCCTGTTGTTTA+TGG | - | chr8_4:15073461-15073480 | Msa1315600:CDS | 40.0% |
TGGTGACTTCCATAAACAAC+AGG | + | chr8_4:15073473-15073492 | None:intergenic | 40.0% | |
CCCCAAACCAAAACATTTGT+AGG | + | chr8_4:15073830-15073849 | None:intergenic | 40.0% | |
GAACTAAACTCTCTTGGCAA+TGG | + | chr8_4:15074010-15074029 | None:intergenic | 40.0% | |
GAGGAAGAACTAAACTCTCT+TGG | + | chr8_4:15074016-15074035 | None:intergenic | 40.0% | |
GATCTCAATCTTGTTGCCAT+TGG | + | chr8_4:15074085-15074104 | None:intergenic | 40.0% | |
TCCTTCAACTCCAAGTTCTA+TGG | - | chr8_4:15074141-15074160 | Msa1315600:CDS | 40.0% | |
TCCATAGAACTTGGAGTTGA+AGG | + | chr8_4:15074145-15074164 | None:intergenic | 40.0% | |
AACTCCAAGTTCTATGGATG+TGG | - | chr8_4:15074147-15074166 | Msa1315600:CDS | 40.0% | |
TGTTCCACATCCATAGAACT+TGG | + | chr8_4:15074154-15074173 | None:intergenic | 40.0% | |
AGTTCTATGGATGTGGAACA+AGG | - | chr8_4:15074154-15074173 | Msa1315600:CDS | 40.0% | |
GCAACTGCAACTGCAACAAA+AGG | - | chr8_4:15073236-15073255 | Msa1315600:CDS | 45.0% | |
GCAACTGCAACTGCAACAAA+AGG | - | chr8_4:15073236-15073255 | Msa1315600:CDS | 45.0% | |
GCAACTGCAACAAAAGGGTC+AGG | - | chr8_4:15073242-15073261 | Msa1315600:CDS | 50.0% | |
!!! | GTGGTTTTGGTGGCGTTTTG+AGG | - | chr8_4:15073379-15073398 | Msa1315600:CDS | 50.0% |
GCAACTGCAACAAAAGGGTC+AGG | - | chr8_4:15073242-15073261 | Msa1315600:CDS | 50.0% | |
!!! | GTGGTTTTGGTGGCGTTTTG+AGG | - | chr8_4:15073379-15073398 | Msa1315600:CDS | 50.0% |
AAACAAACCGCCGTCGACGA+CGG | + | chr8_4:15073433-15073452 | None:intergenic | 55.0% | |
!!! | CGGCGGTTTGTTTTTGCTCC+TGG | - | chr8_4:15073440-15073459 | Msa1315600:CDS | 55.0% |
AAACAAACCGCCGTCGACGA+CGG | + | chr8_4:15073433-15073452 | None:intergenic | 55.0% | |
!!! | CGGCGGTTTGTTTTTGCTCC+TGG | - | chr8_4:15073440-15073459 | Msa1315600:CDS | 55.0% |
CGACGGCGGTTTCTTGGTTG+AGG | + | chr8_4:15073416-15073435 | None:intergenic | 60.0% | |
CAAGAAACCGCCGTCGTCGA+CGG | - | chr8_4:15073420-15073439 | Msa1315600:CDS | 60.0% | |
CGACGGCGGTTTCTTGGTTG+AGG | + | chr8_4:15073416-15073435 | None:intergenic | 60.0% | |
CAAGAAACCGCCGTCGTCGA+CGG | - | chr8_4:15073420-15073439 | Msa1315600:CDS | 60.0% | |
CGTCGACGACGGCGGTTTCT+TGG | + | chr8_4:15073422-15073441 | None:intergenic | 65.0% | |
CGTCGACGACGGCGGTTTCT+TGG | + | chr8_4:15073422-15073441 | None:intergenic | 65.0% | |
GAAACCGCCGTCGTCGACGG+CGG | - | chr8_4:15073423-15073442 | Msa1315600:CDS | 70.0% | |
CAAACCGCCGTCGACGACGG+CGG | + | chr8_4:15073430-15073449 | None:intergenic | 70.0% | |
GAAACCGCCGTCGTCGACGG+CGG | - | chr8_4:15073423-15073442 | Msa1315600:CDS | 70.0% | |
CAAACCGCCGTCGACGACGG+CGG | + | chr8_4:15073430-15073449 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 15073230 | 15074186 | 15073230 | ID=Msa1315600;Name=Msa1315600 |
chr8_4 | mRNA | 15073230 | 15074186 | 15073230 | ID=Msa1315600-mRNA-1;Parent=Msa1315600;Name=Msa1315600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|-1|0|1|-1|1|1|0|318 |
chr8_4 | exon | 15073230 | 15074186 | 15073230 | ID=Msa1315600-mRNA-1:exon:5791;Parent=Msa1315600-mRNA-1 |
chr8_4 | CDS | 15073230 | 15074186 | 15073230 | ID=Msa1315600-mRNA-1:cds;Parent=Msa1315600-mRNA-1 |
Gene Sequence |
Protein sequence |