AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0453310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453310 MtrunA17_Chr3g0099231 94.330 388 17 1 1 383 1 388 0.0 757
Msa0453310 MtrunA17_Chr3g0099161 73.684 361 88 2 1 354 64 424 0.0 552
Msa0453310 MtrunA17_Chr3g0099151 70.604 364 99 3 1 356 59 422 0.0 541
Msa0453310 MtrunA17_Chr5g0444401 64.957 351 116 2 10 354 11 360 5.84e-171 481
Msa0453310 MtrunA17_Chr4g0068441 33.702 362 225 6 2 355 13 367 4.92e-73 232
Msa0453310 MtrunA17_Chr2g0294301 35.714 364 218 6 4 354 6 366 2.90e-72 230
Msa0453310 MtrunA17_Chr8g0374101 35.616 365 216 9 7 353 10 373 1.44e-71 228
Msa0453310 MtrunA17_Chr3g0077571 33.705 359 231 5 1 356 3 357 1.23e-70 225
Msa0453310 MtrunA17_Chr1g0189901 35.613 351 219 5 9 354 13 361 3.93e-70 224
Msa0453310 MtrunA17_Chr5g0434621 33.333 327 214 3 15 338 12 337 4.66e-70 224
Msa0453310 MtrunA17_Chr4g0017431 33.333 342 220 5 21 356 24 363 6.33e-70 224
Msa0453310 MtrunA17_Chr8g0370951 33.989 356 216 7 16 357 19 369 1.85e-68 220
Msa0453310 MtrunA17_Chr1g0189931 34.648 355 224 4 6 354 10 362 1.15e-67 218
Msa0453310 MtrunA17_Chr7g0275021 33.427 356 226 5 9 354 10 364 8.52e-67 216
Msa0453310 MtrunA17_Chr7g0274991 35.030 334 207 5 28 354 33 363 1.85e-66 215
Msa0453310 MtrunA17_Chr2g0294311 33.913 345 209 6 27 355 31 372 7.86e-66 213
Msa0453310 MtrunA17_Chr7g0275011 34.627 335 211 4 28 356 34 366 1.87e-65 212
Msa0453310 MtrunA17_Chr1g0182811 35.522 335 206 6 28 354 33 365 2.01e-65 212
Msa0453310 MtrunA17_Chr8g0370981 32.331 399 214 7 9 354 22 417 9.27e-65 212
Msa0453310 MtrunA17_Chr3g0092131 31.302 361 233 5 9 364 3 353 5.20e-64 208
Msa0453310 MtrunA17_Chr7g0275001 34.234 333 212 3 28 354 25 356 6.57e-64 208
Msa0453310 MtrunA17_Chr2g0320671 35.072 345 213 8 2 337 1 343 1.16e-63 207
Msa0453310 MtrunA17_Chr4g0060811 32.588 313 205 4 30 337 29 340 1.44e-62 204
Msa0453310 MtrunA17_Chr4g0008851 34.072 361 227 7 2 354 7 364 3.65e-62 204
Msa0453310 MtrunA17_Chr2g0285061 34.417 369 225 10 1 356 1 365 3.71e-62 203
Msa0453310 MtrunA17_Chr6g0457921 33.427 356 224 8 10 354 7 360 2.41e-61 201
Msa0453310 MtrunA17_Chr3g0086641 35.000 340 209 8 25 356 35 370 4.83e-61 201
Msa0453310 MtrunA17_Chr7g0215961 32.857 350 211 7 14 354 16 350 2.36e-60 199
Msa0453310 MtrunA17_Chr8g0380041 33.430 344 209 9 25 356 28 363 4.23e-60 198
Msa0453310 MtrunA17_Chr3g0131321 31.579 361 235 5 4 353 7 366 7.86e-60 198
Msa0453310 MtrunA17_Chr1g0189891 34.831 356 215 8 7 354 8 354 1.45e-59 197
Msa0453310 MtrunA17_Chr2g0301641 33.041 342 213 6 28 358 43 379 1.23e-58 195
Msa0453310 MtrunA17_Chr8g0341001 32.759 348 221 8 1 337 1 346 1.05e-57 192
Msa0453310 MtrunA17_Chr4g0046151 33.148 359 212 9 8 340 10 366 1.92e-55 186
Msa0453310 MtrunA17_Chr8g0371491 34.862 327 199 8 16 333 24 345 2.04e-55 186
Msa0453310 MtrunA17_Chr5g0396511 30.816 331 222 4 30 354 48 377 2.47e-55 186
Msa0453310 MtrunA17_Chr2g0330781 33.939 330 206 7 18 337 18 345 7.16e-55 184
Msa0453310 MtrunA17_Chr2g0283191 34.783 345 202 11 4 327 8 350 7.26e-55 185
Msa0453310 MtrunA17_Chr1g0156921 34.848 330 200 8 26 345 40 364 1.27e-54 184
Msa0453310 MtrunA17_Chr5g0420811 32.203 354 203 11 4 338 1 336 8.96e-53 179
Msa0453310 MtrunA17_Chr3g0077581 33.237 346 209 10 22 353 30 367 1.02e-52 179
Msa0453310 MtrunA17_Chr1g0156931 33.051 354 218 6 1 337 1 352 2.16e-52 178
Msa0453310 MtrunA17_Chr5g0432101 32.492 317 204 6 25 333 30 344 4.19e-51 175
Msa0453310 MtrunA17_Chr4g0027521 31.988 322 206 7 26 337 25 343 6.71e-50 171
Msa0453310 MtrunA17_Chr3g0105401 30.145 345 230 7 1 337 1 342 7.20e-50 171
Msa0453310 MtrunA17_Chr5g0405821 32.822 326 205 7 24 339 39 360 1.23e-49 171
Msa0453310 MtrunA17_Chr5g0438621 31.447 318 210 6 26 337 28 343 1.63e-49 170
Msa0453310 MtrunA17_Chr2g0285001 30.481 374 233 12 1 358 1 363 3.61e-49 170
Msa0453310 MtrunA17_Chr5g0405831 32.812 320 200 8 24 333 39 353 5.36e-49 169
Msa0453310 MtrunA17_Chr8g0380031 29.539 369 224 13 2 354 56 404 8.86e-49 170
Msa0453310 MtrunA17_Chr5g0438641 31.132 318 211 6 23 334 27 342 9.97e-49 168
Msa0453310 MtrunA17_Chr3g0085881 32.938 337 208 10 23 354 28 351 1.06e-48 168
Msa0453310 MtrunA17_Chr5g0438631 32.188 320 206 7 26 337 26 342 3.42e-48 167
Msa0453310 MtrunA17_Chr1g0156911 34.185 313 199 5 27 334 36 346 3.64e-48 167
Msa0453310 MtrunA17_Chr2g0284951 31.694 366 221 14 7 358 7 357 4.34e-47 164
Msa0453310 MtrunA17_Chr3g0085231 31.657 338 208 10 26 356 29 350 5.00e-47 164
Msa0453310 MtrunA17_Chr8g0349341 31.818 374 224 11 1 354 1 363 1.00e-46 163
Msa0453310 MtrunA17_Chr2g0284991 31.143 350 222 11 25 365 30 369 1.10e-46 163
Msa0453310 MtrunA17_Chr3g0120861 28.793 323 222 6 21 337 31 351 1.20e-46 163
Msa0453310 MtrunA17_Chr3g0142941 31.975 319 200 8 26 334 45 356 1.76e-46 162
Msa0453310 MtrunA17_Chr1g0156891 34.018 341 206 8 10 334 16 353 1.27e-45 160
Msa0453310 MtrunA17_Chr8g0344931 30.205 341 218 9 24 356 33 361 2.06e-45 159
Msa0453310 MtrunA17_Chr3g0142921 32.286 350 212 7 9 337 4 349 1.17e-44 157
Msa0453310 MtrunA17_Chr8g0344941 29.878 328 203 10 28 339 41 357 3.66e-44 157
Msa0453310 MtrunA17_Chr1g0156901 31.378 341 219 7 4 334 24 359 8.31e-44 155
Msa0453310 MtrunA17_Chr2g0284941 32.267 344 191 13 25 358 30 341 1.18e-43 155
Msa0453310 MtrunA17_Chr8g0370961 30.568 229 156 2 127 353 15 242 1.82e-43 151
Msa0453310 MtrunA17_Chr8g0371481 31.385 325 204 8 27 339 40 357 6.86e-43 153
Msa0453310 MtrunA17_Chr8g0349321 30.133 375 231 11 1 355 1 364 1.00e-42 152
Msa0453310 MtrunA17_Chr2g0284921 29.014 355 231 11 12 356 18 361 2.04e-42 152
Msa0453310 MtrunA17_Chr8g0371471 30.194 361 221 10 1 337 1 354 5.80e-42 150
Msa0453310 MtrunA17_Chr5g0437421 30.982 326 204 8 25 335 29 348 4.47e-40 145
Msa0453310 MtrunA17_Chr8g0349331 28.723 376 203 11 1 355 1 332 1.20e-38 141
Msa0453310 MtrunA17_Chr1g0157001 30.565 301 199 6 33 327 41 337 1.01e-35 134
Msa0453310 MtrunA17_Chr8g0349301 30.142 282 181 7 28 304 37 307 5.68e-34 128
Msa0453310 MtrunA17_Chr6g0459921 32.016 253 157 8 111 356 117 361 1.06e-32 125
Msa0453310 MtrunA17_Chr1g0160011 30.409 342 199 14 27 340 39 369 2.48e-32 125
Msa0453310 MtrunA17_Chr7g0226911 28.093 388 213 13 2 340 1 371 2.78e-32 125
Msa0453310 MtrunA17_Chr6g0455661 31.799 239 154 7 125 356 236 472 2.94e-32 126
Msa0453310 MtrunA17_Chr6g0455661 44.961 129 63 5 2 128 3 125 4.49e-22 97.4
Msa0453310 MtrunA17_Chr7g0226941 30.056 356 201 15 27 349 32 372 3.32e-31 122
Msa0453310 MtrunA17_Chr1g0160031 31.287 342 196 14 27 340 38 368 2.03e-30 120
Msa0453310 MtrunA17_Chr7g0226931 26.463 393 222 14 1 340 7 385 2.10e-30 120
Msa0453310 MtrunA17_Chr3g0104821 29.706 340 204 11 28 341 44 374 5.86e-29 116
Msa0453310 MtrunA17_Chr1g0159991 28.286 350 210 11 27 347 35 372 4.01e-28 113
Msa0453310 MtrunA17_Chr4g0057991 28.363 342 208 13 29 347 40 367 6.44e-28 113
Msa0453310 MtrunA17_Chr7g0275291 25.788 349 216 11 28 347 33 367 8.98e-28 112
Msa0453310 MtrunA17_Chr7g0271551 26.286 350 209 15 23 347 31 356 4.45e-27 110
Msa0453310 MtrunA17_Chr6g0450731 27.928 333 205 10 27 340 32 348 9.17e-27 109
Msa0453310 MtrunA17_Chr4g0027571 28.910 211 145 3 132 337 3 213 2.87e-26 105
Msa0453310 MtrunA17_Chr7g0229591 40.828 169 96 4 26 192 28 194 7.01e-26 103
Msa0453310 MtrunA17_Chr1g0159981 27.887 355 205 15 27 347 45 382 2.07e-25 106
Msa0453310 MtrunA17_Chr1g0178931 25.786 318 210 11 29 337 38 338 2.14e-25 105
Msa0453310 MtrunA17_Chr1g0198351 26.648 349 193 16 10 327 17 333 2.62e-25 105
Msa0453310 MtrunA17_Chr3g0112821 28.614 339 211 11 28 346 30 357 9.71e-25 103
Msa0453310 MtrunA17_Chr6g0450701 27.297 381 232 14 1 352 12 376 1.15e-24 103
Msa0453310 MtrunA17_Chr3g0093031 27.616 344 213 11 28 346 30 362 1.26e-24 103
Msa0453310 MtrunA17_Chr6g0450721 26.786 336 203 12 27 340 32 346 1.28e-24 103
Msa0453310 MtrunA17_Chr1g0160101 26.361 349 207 14 27 340 41 374 1.50e-24 103
Msa0453310 MtrunA17_Chr7g0254461 26.437 348 211 12 27 340 42 378 3.84e-24 102
Msa0453310 MtrunA17_Chr1g0189921 45.690 116 62 1 4 119 7 121 5.42e-24 96.7
Msa0453310 MtrunA17_Chr6g0450711 27.114 343 206 11 27 340 121 448 5.64e-24 102
Msa0453310 MtrunA17_Chr2g0283511 30.000 340 204 17 33 347 36 366 7.08e-24 101
Msa0453310 MtrunA17_Chr1g0178941 27.052 329 200 15 29 337 41 349 8.31e-24 101
Msa0453310 MtrunA17_Chr2g0283481 28.024 339 210 13 28 341 47 376 2.10e-23 100
Msa0453310 MtrunA17_Chr5g0440501 25.941 239 164 4 129 354 11 249 2.58e-23 97.8
Msa0453310 MtrunA17_Chr8g0347751 26.149 348 208 12 28 340 36 369 2.93e-23 100
Msa0453310 MtrunA17_Chr8g0370971 47.458 118 50 4 13 119 17 133 2.99e-23 95.1
Msa0453310 MtrunA17_Chr2g0301581 27.528 356 214 13 9 341 13 347 4.54e-23 99.4
Msa0453310 MtrunA17_Chr7g0266061 24.615 325 212 13 26 337 40 344 4.97e-23 99.0
Msa0453310 MtrunA17_Chr1g0189911 33.566 143 92 1 215 354 2 144 5.98e-23 94.0
Msa0453310 MtrunA17_Chr8g0352901 28.608 388 218 15 2 350 1 368 1.46e-22 97.8
Msa0453310 MtrunA17_Chr1g0159971 26.158 367 221 15 28 360 47 397 1.11e-21 95.9
Msa0453310 MtrunA17_Chr2g0301541 27.247 356 215 13 9 341 13 347 1.43e-21 94.7
Msa0453310 MtrunA17_Chr8g0381581 27.479 353 200 14 27 340 39 374 1.66e-21 95.1
Msa0453310 MtrunA17_Chr2g0321991 48.958 96 47 2 22 116 27 121 1.19e-20 87.0
Msa0453310 MtrunA17_Chr1g0191461 26.316 342 209 13 27 337 30 359 1.48e-20 92.0
Msa0453310 MtrunA17_Chr1g0198381 25.846 325 201 13 29 337 3 303 1.83e-20 90.9
Msa0453310 MtrunA17_Chr2g0317271 28.107 338 197 12 28 341 30 345 3.58e-20 90.9
Msa0453310 MtrunA17_Chr2g0283531 27.005 374 225 17 2 341 1 360 3.92e-20 90.9
Msa0453310 MtrunA17_Chr2g0317261 28.107 338 197 12 28 341 30 345 9.15e-20 89.7
Msa0453310 MtrunA17_Chr0c01g0489581 28.228 333 203 11 28 341 30 345 2.33e-19 88.6
Msa0453310 MtrunA17_Chr0c01g0489571 28.228 333 203 11 28 341 30 345 3.98e-19 87.8
Msa0453310 MtrunA17_Chr6g0469511 44.444 117 62 3 26 141 28 142 4.71e-19 82.8
Msa0453310 MtrunA17_Chr7g0273101 24.716 352 221 12 27 347 28 366 5.23e-19 87.8
Msa0453310 MtrunA17_Chr4g0027561 46.535 101 52 2 26 125 28 127 9.17e-19 82.4
Msa0453310 MtrunA17_Chr7g0229581 29.861 144 97 2 198 337 3 146 1.12e-18 82.4
Msa0453310 MtrunA17_Chr8g0339251 28.896 308 187 11 2 294 1 291 2.52e-17 82.0
Msa0453310 MtrunA17_Chr4g0018571 30.282 142 95 2 200 337 28 169 2.90e-17 79.0
Msa0453310 MtrunA17_Chr3g0096551 26.913 379 216 15 9 340 3 367 3.08e-17 82.4
Msa0453310 MtrunA17_Chr7g0228261 37.500 80 50 0 275 354 11 90 1.07e-16 75.1
Msa0453310 MtrunA17_Chr3g0112691 26.571 350 207 14 28 346 30 360 2.92e-16 79.3
Msa0453310 MtrunA17_Chr3g0104831 28.517 263 155 10 105 341 38 293 5.45e-16 78.2
Msa0453310 MtrunA17_Chr1g0198391 24.079 353 195 13 17 327 22 343 8.00e-15 75.1
Msa0453310 MtrunA17_Chr4g0018561 50.943 53 25 1 26 78 28 79 4.17e-11 59.3
Msa0453310 MtrunA17_Chr2g0308201 46.250 80 35 3 9 82 10 87 7.29e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453310 AT5G55050.1 50.442 339 157 5 26 354 37 374 1.13e-112 334
Msa0453310 AT5G37690.1 37.380 313 192 3 29 338 28 339 4.67e-78 244
Msa0453310 AT3G50400.1 37.326 359 211 9 8 353 14 371 4.78e-74 235
Msa0453310 AT5G37690.2 36.741 313 186 4 29 338 28 331 9.71e-73 231
Msa0453310 AT3G04290.1 35.180 361 223 6 7 360 9 365 2.35e-68 220
Msa0453310 AT5G08460.1 33.708 356 223 6 10 353 28 382 3.12e-66 215
Msa0453310 AT4G10950.2 33.333 336 217 4 26 355 69 403 1.07e-65 214
Msa0453310 AT5G18430.1 33.880 366 227 6 2 356 1 362 5.16e-65 211
Msa0453310 AT4G28780.1 33.832 334 215 3 28 356 31 363 7.57e-65 211
Msa0453310 AT1G29660.1 35.127 353 215 10 14 356 16 364 1.71e-64 210
Msa0453310 AT5G33370.1 35.224 335 209 4 28 356 30 362 5.80e-64 209
Msa0453310 AT1G71691.2 33.735 332 212 6 26 353 53 380 7.60e-64 209
Msa0453310 AT1G71250.1 34.218 339 213 5 25 355 38 374 9.75e-63 206
Msa0453310 AT2G23540.1 33.245 376 225 10 3 353 10 384 1.47e-62 206
Msa0453310 AT4G10950.1 33.036 336 214 5 26 355 69 399 5.07e-62 204
Msa0453310 AT1G74460.1 32.335 334 218 5 9 337 6 336 7.99e-61 201
Msa0453310 AT3G53100.1 35.072 345 213 8 1 337 1 342 7.45e-60 197
Msa0453310 AT1G75890.2 35.802 324 195 6 24 338 43 362 2.78e-59 196
Msa0453310 AT1G75890.3 35.802 324 195 6 24 338 72 391 3.86e-59 197
Msa0453310 AT1G20120.1 35.000 320 194 7 27 337 77 391 1.26e-58 196
Msa0453310 AT1G29670.1 33.983 359 219 11 11 356 10 363 2.30e-58 194
Msa0453310 AT5G22810.1 35.366 328 198 9 21 337 26 350 4.96e-58 193
Msa0453310 AT5G45960.1 34.921 315 191 7 24 327 43 354 5.40e-58 193
Msa0453310 AT1G75890.1 34.835 333 199 6 24 338 43 375 9.96e-58 193
Msa0453310 AT1G29670.2 34.078 358 220 10 11 356 78 431 1.22e-57 194
Msa0453310 AT5G15720.1 33.235 340 209 6 26 353 28 361 1.38e-57 192
Msa0453310 AT1G33811.1 33.243 370 218 12 9 356 8 370 6.43e-56 188
Msa0453310 AT3G16370.1 34.545 330 205 8 15 337 19 344 2.35e-54 183
Msa0453310 AT1G75880.1 35.312 320 200 5 26 339 50 368 9.05e-54 182
Msa0453310 AT5G03820.1 32.743 339 217 7 7 337 13 348 1.06e-53 182
Msa0453310 AT5G45670.1 31.700 347 224 9 1 338 1 343 3.21e-53 181
Msa0453310 AT5G03820.2 32.743 339 217 7 7 337 41 376 3.47e-53 181
Msa0453310 AT2G04570.1 32.853 347 221 8 1 339 1 343 8.27e-53 179
Msa0453310 AT2G42990.1 31.481 324 214 6 21 338 21 342 1.26e-52 179
Msa0453310 AT1G75880.2 35.312 320 199 6 26 339 50 367 4.66e-52 178
Msa0453310 AT5G41890.1 32.418 364 218 11 12 353 15 372 8.99e-52 177
Msa0453310 AT4G18970.1 30.612 343 219 9 26 356 26 361 7.49e-51 174
Msa0453310 AT1G53920.1 32.416 327 201 8 26 340 46 364 2.07e-50 174
Msa0453310 AT4G18970.2 31.176 340 221 9 26 356 26 361 3.37e-50 174
Msa0453310 AT1G20130.1 32.759 348 207 7 22 356 198 531 4.44e-50 176
Msa0453310 AT5G45950.1 31.962 316 207 7 24 336 36 346 4.74e-50 172
Msa0453310 AT2G40250.1 32.812 320 199 6 26 333 34 349 4.85e-50 172
Msa0453310 AT5G42170.1 32.492 317 205 6 26 337 48 360 6.68e-50 172
Msa0453310 AT1G75900.1 30.499 341 224 6 7 339 22 357 7.01e-50 172
Msa0453310 AT1G20130.2 32.759 348 207 7 22 356 178 511 7.42e-50 175
Msa0453310 AT5G03810.1 31.661 319 209 6 26 337 28 344 1.51e-49 171
Msa0453310 AT2G30310.1 31.847 314 206 5 27 333 33 345 4.81e-49 169
Msa0453310 AT1G71120.1 31.034 348 205 9 23 353 26 355 6.51e-49 169
Msa0453310 AT1G20132.1 32.399 321 209 7 24 338 57 375 1.94e-48 169
Msa0453310 AT1G06990.1 29.358 327 222 5 14 333 23 347 1.01e-47 166
Msa0453310 AT1G53990.1 29.443 377 236 9 1 358 1 366 1.58e-47 166
Msa0453310 AT1G75920.2 32.738 336 202 9 12 337 13 334 3.09e-47 164
Msa0453310 AT1G58430.1 31.132 318 211 6 27 337 34 350 9.19e-47 164
Msa0453310 AT3G14820.1 30.259 347 225 9 2 337 1 341 1.06e-46 163
Msa0453310 AT4G26790.1 31.056 322 208 8 25 337 26 342 2.49e-46 162
Msa0453310 AT4G26790.2 31.056 322 208 8 25 337 26 342 2.49e-46 162
Msa0453310 AT3G14225.1 28.571 343 229 7 28 356 37 377 6.68e-46 162
Msa0453310 AT1G71691.1 29.032 279 192 4 79 353 3 279 8.30e-46 159
Msa0453310 AT3G14225.2 29.032 341 226 7 28 356 37 373 1.07e-45 161
Msa0453310 AT1G20135.1 30.868 311 199 8 28 334 29 327 1.56e-45 159
Msa0453310 AT2G24560.1 31.629 313 200 8 27 329 33 341 2.00e-45 160
Msa0453310 AT2G31540.1 31.515 330 209 8 27 343 34 359 4.10e-45 159
Msa0453310 AT1G75910.1 32.817 323 190 10 27 337 27 334 8.85e-45 158
Msa0453310 AT2G30220.1 30.794 315 204 6 27 331 32 342 1.27e-44 158
Msa0453310 AT5G40990.1 28.947 342 227 6 28 357 37 374 2.64e-44 157
Msa0453310 AT2G19010.1 28.696 345 220 11 5 340 7 334 3.85e-44 156
Msa0453310 AT2G19010.2 29.706 340 211 12 23 353 55 375 5.28e-44 157
Msa0453310 AT1G53940.2 28.947 342 227 6 28 357 39 376 1.46e-43 155
Msa0453310 AT1G75920.1 31.339 351 202 10 12 337 8 344 2.05e-43 154
Msa0453310 AT1G71691.3 33.840 263 166 6 26 284 53 311 1.38e-42 151
Msa0453310 AT5G63170.1 32.081 346 181 14 4 327 6 319 2.35e-42 151
Msa0453310 AT2G19060.1 30.029 343 206 13 21 350 23 344 3.49e-42 151
Msa0453310 AT2G03980.2 33.546 313 186 9 27 327 42 344 1.85e-41 150
Msa0453310 AT2G03980.3 33.546 313 186 9 27 327 42 344 1.85e-41 150
Msa0453310 AT2G03980.1 33.546 313 186 9 27 327 42 344 1.85e-41 150
Msa0453310 AT2G03980.4 33.546 313 186 9 27 327 42 344 1.85e-41 150
Msa0453310 AT2G19050.1 29.825 342 214 11 23 356 26 349 3.19e-41 149
Msa0453310 AT1G59406.1 31.686 344 214 9 11 339 5 342 3.26e-41 149
Msa0453310 AT1G59030.1 31.686 344 214 9 11 339 5 342 3.26e-41 149
Msa0453310 AT1G58725.1 31.686 344 214 9 11 339 5 342 3.26e-41 149
Msa0453310 AT4G30140.1 29.825 342 212 14 22 355 27 348 7.18e-41 147
Msa0453310 AT4G16230.1 38.053 226 129 7 21 238 23 245 3.49e-40 143
Msa0453310 AT5G33370.2 34.091 264 164 5 28 284 30 290 2.91e-39 143
Msa0453310 AT5G15720.3 29.021 286 188 4 80 353 48 330 3.28e-39 143
Msa0453310 AT1G58520.3 31.661 319 198 9 26 337 28 333 1.37e-38 141
Msa0453310 AT1G58525.1 31.661 319 198 9 26 337 28 333 1.37e-38 141
Msa0453310 AT3G43570.1 29.070 344 207 9 2 339 1 313 2.41e-38 140
Msa0453310 AT1G73610.1 31.503 346 188 14 3 327 8 325 1.12e-37 139
Msa0453310 AT1G54030.1 26.524 328 220 7 29 354 53 361 1.17e-37 140
Msa0453310 AT1G75920.4 31.615 291 176 8 57 337 29 306 2.08e-37 137
Msa0453310 AT1G75930.1 29.305 331 212 9 12 333 13 330 3.66e-37 137
Msa0453310 AT1G75920.3 29.552 335 183 9 12 337 13 303 1.22e-36 135
Msa0453310 AT5G15720.2 32.222 270 165 6 27 284 29 292 9.71e-36 133
Msa0453310 AT1G54000.1 27.729 339 216 9 26 353 34 354 1.25e-33 129
Msa0453310 AT1G54010.1 27.654 358 231 10 8 354 15 355 1.98e-33 128
Msa0453310 AT3G14220.1 26.685 356 234 11 9 354 13 351 1.45e-32 125
Msa0453310 AT1G23500.1 28.367 349 222 9 1 340 10 339 1.13e-31 123
Msa0453310 AT1G54020.2 26.901 342 224 9 21 354 24 347 1.82e-31 123
Msa0453310 AT2G24560.2 30.627 271 174 8 27 287 33 299 3.43e-31 121
Msa0453310 AT2G19050.2 30.980 255 162 7 23 272 26 271 4.42e-31 120
Msa0453310 AT3G48460.1 28.235 340 213 13 29 347 39 368 1.82e-30 120
Msa0453310 AT2G04020.1 37.561 205 119 6 27 228 42 240 1.94e-29 115
Msa0453310 AT2G04020.2 37.561 205 119 6 27 228 42 240 3.25e-29 115
Msa0453310 AT1G54790.3 26.757 370 228 13 8 347 13 369 3.81e-29 117
Msa0453310 AT3G27950.1 27.072 362 220 12 11 340 8 357 1.14e-28 115
Msa0453310 AT1G53940.1 28.897 263 177 5 28 284 39 297 1.35e-28 114
Msa0453310 AT5G14450.1 27.666 347 205 12 27 340 40 373 2.56e-28 114
Msa0453310 AT1G28610.2 29.429 350 213 14 22 347 25 364 1.99e-27 112
Msa0453310 AT1G56670.1 27.089 395 219 14 7 368 12 370 2.76e-27 111
Msa0453310 AT1G28650.1 28.191 376 230 16 1 347 7 371 2.93e-27 111
Msa0453310 AT3G43550.1 29.924 264 175 6 26 284 28 286 3.42e-27 109
Msa0453310 AT1G28670.1 27.513 378 233 17 1 348 5 371 7.71e-27 110
Msa0453310 AT3G62280.1 28.274 336 201 12 22 335 30 347 8.28e-27 110
Msa0453310 AT2G27360.1 28.022 364 220 16 9 341 12 364 1.05e-26 110
Msa0453310 AT1G54030.2 27.490 251 163 6 29 277 53 286 1.53e-26 108
Msa0453310 AT1G54790.1 26.344 372 230 13 8 347 9 368 1.96e-26 109
Msa0453310 AT3G14210.1 26.437 348 221 12 23 354 29 357 2.27e-26 109
Msa0453310 AT3G05180.1 25.634 355 224 10 16 340 24 368 5.81e-26 108
Msa0453310 AT1G28580.1 27.642 369 229 17 1 341 9 367 2.37e-25 106
Msa0453310 AT1G28600.1 28.371 356 223 15 28 360 31 377 5.03e-25 105
Msa0453310 AT5G03610.1 26.935 323 204 12 29 337 44 348 1.02e-24 104
Msa0453310 AT1G28640.1 28.117 377 229 17 1 347 5 369 1.17e-24 104
Msa0453310 AT1G67830.1 28.125 352 205 14 27 343 29 367 2.74e-24 103
Msa0453310 AT1G28660.1 28.571 378 228 17 1 348 5 370 2.81e-24 103
Msa0453310 AT1G28660.2 28.382 377 229 16 1 348 5 369 3.03e-24 103
Msa0453310 AT2G31550.1 31.551 187 114 6 162 337 26 209 3.82e-24 99.8
Msa0453310 AT1G28570.1 27.807 374 221 17 2 341 6 364 6.45e-24 102
Msa0453310 AT1G09390.1 26.415 371 211 17 24 368 33 367 7.84e-24 102
Msa0453310 AT3G09930.2 26.074 326 206 12 29 338 40 346 2.45e-23 100
Msa0453310 AT3G09930.1 26.074 326 206 12 29 338 40 346 2.45e-23 100
Msa0453310 AT4G01130.1 25.995 377 232 13 3 344 7 371 3.06e-23 100
Msa0453310 AT1G31550.2 25.341 367 238 14 1 341 9 365 7.05e-23 99.4
Msa0453310 AT1G54020.1 26.022 269 180 7 90 354 8 261 7.11e-22 94.7
Msa0453310 AT1G54020.5 26.022 269 180 7 90 354 8 261 7.11e-22 94.7
Msa0453310 AT1G54020.3 26.022 269 180 7 90 354 8 261 7.11e-22 94.7
Msa0453310 AT4G16233.1 32.812 128 85 1 232 358 5 132 9.16e-22 90.5
Msa0453310 AT1G28590.1 27.457 346 216 16 22 341 30 366 1.03e-21 96.3
Msa0453310 AT1G54790.2 24.623 398 230 15 8 347 9 394 1.56e-21 95.9
Msa0453310 AT3G26430.1 26.346 353 204 13 27 340 30 365 5.94e-21 94.0
Msa0453310 AT1G54020.4 24.510 204 150 2 155 354 9 212 1.15e-19 87.8
Msa0453310 AT3G14210.2 26.667 210 143 5 155 354 21 229 3.13e-18 84.0
Msa0453310 AT5G45910.1 26.247 381 234 16 4 348 1 370 4.06e-18 85.5
Msa0453310 AT1G56670.2 26.471 306 177 10 7 284 12 297 1.47e-16 80.1
Msa0453310 AT4G01130.3 25.606 289 175 10 91 344 2 285 3.62e-16 79.0
Msa0453310 AT4G16220.1 46.316 95 47 3 21 114 23 114 1.03e-15 76.6
Msa0453310 AT1G28580.2 26.316 285 178 13 81 341 10 286 1.37e-15 77.4
Msa0453310 AT4G01130.2 26.715 277 171 10 28 284 34 298 3.33e-15 76.3
Msa0453310 AT3G62280.2 26.217 267 162 10 22 271 30 278 5.47e-14 72.4
Msa0453310 AT2G36325.1 23.547 327 216 10 25 337 44 350 1.26e-13 72.0

Find 72 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGCACTTACATAATT+TGG 0.117449 3_3:+43415784 None:intergenic
AAACCTTCACTCCATGTTAA+AGG 0.251588 3_3:-43414364 Msa0453310:CDS
GTATTTAACTGACAATAAAT+TGG 0.252298 3_3:+43414392 None:intergenic
GGTGGTGCTGGAATATTTAA+AGG 0.285187 3_3:-43415814 Msa0453310:CDS
TCCATCTTCTTTGTTGTGAT+TGG 0.305205 3_3:-43414909 Msa0453310:CDS
TCTTTCTTCATCTTAAGTTT+AGG 0.311509 3_3:-43416760 Msa0453310:CDS
ATAGACAAGACCATATCTTT+TGG 0.336790 3_3:-43414095 Msa0453310:CDS
GTTCCTGCTGTTTATGTGTT+TGG 0.346997 3_3:-43416718 Msa0453310:CDS
AACTTTGCCTCTGGTGGTGC+TGG 0.348127 3_3:-43415826 Msa0453310:CDS
CTCCCAGCAGGTTTCTTAGT+TGG 0.349233 3_3:+43416610 None:intergenic
GCTTCATATTAAGAAATTGA+TGG 0.374726 3_3:+43413759 None:intergenic
AAAGATATGGTCTTGTCTAT+TGG 0.388766 3_3:+43414098 None:intergenic
AGTAGCTCTTTCATACTAAC+AGG 0.395222 3_3:+43413994 None:intergenic
GAAGAATCGACAAAGCAAAT+AGG 0.417938 3_3:-43414963 Msa0453310:CDS
GGAAACAATGATTACTTGAA+TGG 0.427461 3_3:-43416676 Msa0453310:CDS
CATGTTAAAGGAATGGCAAT+TGG 0.427882 3_3:-43414352 Msa0453310:CDS
ATTGTCGATAGACTTTATAA+TGG 0.436718 3_3:-43414036 Msa0453310:CDS
AGGATTCTTAGAAGCTCAAA+AGG 0.440544 3_3:-43416740 Msa0453310:CDS
TTGGATTCTGAATGAGGTCT+TGG 0.448841 3_3:+43414283 None:intergenic
GGACTGAATCCCAAAAGATA+TGG 0.451724 3_3:+43414085 None:intergenic
AAAGCTGCATGTTGTGGAAT+TGG 0.456571 3_3:-43414168 Msa0453310:CDS
AGTGGTGTTAACTTTGCCTC+TGG 0.462882 3_3:-43415835 Msa0453310:CDS
GAAGAAAGAGATAAAGAGAA+AGG 0.475686 3_3:+43416774 None:intergenic
CAATTGCCATTCCTTTAACA+TGG 0.483611 3_3:+43414353 None:intergenic
GTGATAATACCATGAGAAGT+TGG 0.483668 3_3:+43414264 None:intergenic
TCACAGAGATTATACAAAAG+TGG 0.484891 3_3:-43414504 Msa0453310:intron
AAGAATGCTGCTGATTTGAT+TGG 0.486579 3_3:-43416574 Msa0453310:intron
GGAAAATCAATACCATAGTA+AGG 0.489381 3_3:+43416631 None:intergenic
GCAAGGAGATTCGAGATTGC+TGG 0.494301 3_3:-43414480 Msa0453310:CDS
CCATTGCAAAACCTCCCAGC+AGG 0.499605 3_3:+43416598 None:intergenic
GCCAATCACAACAAAGAAGA+TGG 0.499649 3_3:+43414908 None:intergenic
GTCATTAAAAGTGCAACTAC+AGG 0.501266 3_3:-43414802 Msa0453310:intron
TTTCCAACTAAGAAACCTGC+TGG 0.509034 3_3:-43416613 Msa0453310:CDS
GAAGATGCTAGAGAGAGGTA+TGG 0.509487 3_3:+43415874 None:intergenic
GGTGTTAACTTTGCCTCTGG+TGG 0.510704 3_3:-43415832 Msa0453310:CDS
ATTGCTGGTGTGGCTGCAAT+CGG 0.514139 3_3:-43414465 Msa0453310:CDS
GGTGACTCACTTGTTGATGT+TGG 0.515859 3_3:-43416697 Msa0453310:CDS
GATGCTAGAGAGAGGTATGG+TGG 0.518679 3_3:+43415877 None:intergenic
TTTGTCTTTGTAGTGTGTAG+TGG 0.524025 3_3:+43416870 None:intergenic
ATTCAGAATCCAACTTCTCA+TGG 0.531711 3_3:-43414273 Msa0453310:intron
ACAACAGTTTGTCGAATCCA+TGG 0.541949 3_3:-43414829 Msa0453310:CDS
TTGTTCTTAAGCCTCAATGT+AGG 0.542501 3_3:+43414435 None:intergenic
CTTTGATTACTTCAATTCGA+AGG 0.543505 3_3:-43414874 Msa0453310:CDS
TGGATTCGACAAACTGTTGT+GGG 0.544904 3_3:+43414832 None:intergenic
AAAGTTAACACCACTCAAGA+AGG 0.556148 3_3:+43415843 None:intergenic
ATGTTTGCACTTGGTAGACA+TGG 0.557549 3_3:+43414126 None:intergenic
AATACATTTAACAAAGCAAG+TGG 0.559176 3_3:-43415006 Msa0453310:CDS
GAGAAGTTGGATTCTGAATG+AGG 0.559748 3_3:+43414277 None:intergenic
ATGGATTCGACAAACTGTTG+TGG 0.566468 3_3:+43414831 None:intergenic
TTCACTCCATGTTAAAGGAA+TGG 0.568239 3_3:-43414359 Msa0453310:CDS
TCGGATGTTGTCCTACATTG+AGG 0.568542 3_3:-43414446 Msa0453310:CDS
TTGGTACAAATGTTTGCACT+TGG 0.586465 3_3:+43414117 None:intergenic
ATTCCTTTAACATGGAGTGA+AGG 0.588758 3_3:+43414361 None:intergenic
ATGCGAGTTACTGCCTCAGT+AGG 0.597608 3_3:+43414060 None:intergenic
TCACCAAACACATAAACAGC+AGG 0.599187 3_3:+43416715 None:intergenic
GGTATGGTGGTGAAGTTGCA+AGG 0.604428 3_3:+43415890 None:intergenic
TTCCAACTAAGAAACCTGCT+GGG 0.609808 3_3:-43416612 Msa0453310:CDS
GATTATACAAAAGTGGTGCA+AGG 0.617902 3_3:-43414497 Msa0453310:CDS
GAGATTCGAGATTGCTGGTG+TGG 0.621106 3_3:-43414475 Msa0453310:CDS
CGTTAGAAGATGCTAGAGAG+AGG 0.627849 3_3:+43415869 None:intergenic
TCTAACGTATCCTTCTTGAG+TGG 0.631948 3_3:-43415853 Msa0453310:CDS
GAGTTACTGCCTCAGTAGGA+TGG 0.632248 3_3:+43414064 None:intergenic
CATTACAAAACAGACAACAT+AGG 0.633363 3_3:-43416817 Msa0453310:five_prime_UTR
ATTCTGAATGAGGTCTTGGA+TGG 0.637285 3_3:+43414287 None:intergenic
GATGTGAAAGCTGCATGTTG+TGG 0.645421 3_3:-43414174 Msa0453310:CDS
AAATATTCCAGCACCACCAG+AGG 0.649840 3_3:+43415819 None:intergenic
ACAGGAGATGTGTATTGTGA+TGG 0.654472 3_3:+43414012 None:intergenic
CAACTAAGAAACCTGCTGGG+AGG 0.666597 3_3:-43416609 Msa0453310:CDS
CAAAGAAGATGGATTCTGAG+AGG 0.677477 3_3:+43414919 None:intergenic
GGATTCAGTCCATCCTACTG+AGG 0.681661 3_3:-43414073 Msa0453310:CDS
GAATTACCAAGAGAAAAGTG+TGG 0.722332 3_3:-43413869 Msa0453310:three_prime_UTR
GGATTCGACAAACTGTTGTG+GGG 0.742366 3_3:+43414833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATGAAAAATGTAAT+GGG + chr3_3:43416701-43416720 None:intergenic 10.0%
!!! AATTTTTTTAGCAAAACTTT+TGG - chr3_3:43414393-43414412 Msa0453310:CDS 15.0%
!! TCATTATTAATATTAACTTC+TGG + chr3_3:43414666-43414685 None:intergenic 15.0%
!!! ATTGATTTAATGCAAAAATT+AGG + chr3_3:43414707-43414726 None:intergenic 15.0%
!! TAATATCTTTGTTAAAAGTT+CGG + chr3_3:43415283-43415302 None:intergenic 15.0%
!! TTTCCAAATAAAATATACAA+TGG - chr3_3:43415310-43415329 Msa0453310:intron 15.0%
!! CAATAAAATGAAAAATGTAA+TGG + chr3_3:43416702-43416721 None:intergenic 15.0%
!! ACTTATATGATAAGTGTTTA+TGG + chr3_3:43414161-43414180 None:intergenic 20.0%
!! AACAAAAATGCAAGAAAATA+TGG + chr3_3:43414274-43414293 None:intergenic 20.0%
!!! GTTTTATCAAATATCTTCAT+TGG - chr3_3:43414368-43414387 Msa0453310:CDS 20.0%
!!! GAACCATTGTATATTTTATT+TGG + chr3_3:43415316-43415335 None:intergenic 20.0%
!! TAACAACTATTACTACATTT+GGG + chr3_3:43415543-43415562 None:intergenic 20.0%
!! ATAACAACTATTACTACATT+TGG + chr3_3:43415544-43415563 None:intergenic 20.0%
!!! TTTAATCACTTTGACTTTAA+GGG + chr3_3:43415567-43415586 None:intergenic 20.0%
!!! TATAAAGATTCTAGAGATTT+CGG + chr3_3:43416031-43416050 None:intergenic 20.0%
!! GTATTTAACTGACAATAAAT+TGG + chr3_3:43416252-43416271 None:intergenic 20.0%
!!! TTTTTTATGTCCATTTTTTC+AGG - chr3_3:43416437-43416456 Msa0453310:intron 20.0%
!!! TTTCATTTTATTGAGTTTGT+TGG - chr3_3:43416709-43416728 Msa0453310:CDS 20.0%
! TCTTTCTTCATCTTAAGTTT+AGG - chr3_3:43413881-43413900 Msa0453310:three_prime_UTR 25.0%
!!! AAAGCTATTTTACCTTACTA+TGG - chr3_3:43413998-43414017 Msa0453310:CDS 25.0%
!! ACTGTTTTCATAAACTATCA+TGG - chr3_3:43414209-43414228 Msa0453310:intron 25.0%
!! TTTCTGCAATATTTTTCTCA+TGG - chr3_3:43414428-43414447 Msa0453310:CDS 25.0%
! ATGTTATGTGAGAAAGAAAA+AGG - chr3_3:43414583-43414602 Msa0453310:intron 25.0%
! AAGAAAAAGGTAGGAAAAAA+AGG - chr3_3:43414596-43414615 Msa0453310:intron 25.0%
! ATTGTTATAGCTGAAAAAGT+AGG - chr3_3:43414728-43414747 Msa0453310:intron 25.0%
!! AATGTGACACATAGTATTTT+TGG + chr3_3:43415108-43415127 None:intergenic 25.0%
! TAAAATGACCCAATTATATC+TGG - chr3_3:43415356-43415375 Msa0453310:intron 25.0%
! AAAATGACCCAATTATATCT+GGG - chr3_3:43415357-43415376 Msa0453310:intron 25.0%
!! CTTTAATCACTTTGACTTTA+AGG + chr3_3:43415568-43415587 None:intergenic 25.0%
! AAGTCAAAGTGATTAAAGAA+TGG - chr3_3:43415570-43415589 Msa0453310:intron 25.0%
! AATACATTTAACAAAGCAAG+TGG - chr3_3:43415635-43415654 Msa0453310:intron 25.0%
!!! TAAGCATAGTTCTAAATATG+CGG + chr3_3:43416060-43416079 None:intergenic 25.0%
!! TATTTAGAACTATGCTTAGA+AGG - chr3_3:43416062-43416081 Msa0453310:intron 25.0%
!! TATTTGCATCCATTTTCATT+TGG - chr3_3:43416100-43416119 Msa0453310:intron 25.0%
! ATCACATACTCATACTTTAT+TGG - chr3_3:43416395-43416414 Msa0453310:intron 25.0%
! ATCTACAAATCCTGAAAAAA+TGG + chr3_3:43416450-43416469 None:intergenic 25.0%
! ATTGTCGATAGACTTTATAA+TGG - chr3_3:43416605-43416624 Msa0453310:CDS 25.0%
! GCTTCATATTAAGAAATTGA+TGG + chr3_3:43416885-43416904 None:intergenic 25.0%
CATTACAAAACAGACAACAT+AGG - chr3_3:43413824-43413843 Msa0453310:three_prime_UTR 30.0%
GAAGAAAGAGATAAAGAGAA+AGG + chr3_3:43413870-43413889 None:intergenic 30.0%
GGAAACAATGATTACTTGAA+TGG - chr3_3:43413965-43413984 Msa0453310:CDS 30.0%
! AGGTAAAATAGCTTTTGCAA+AGG + chr3_3:43413993-43414012 None:intergenic 30.0%
GGAAAATCAATACCATAGTA+AGG + chr3_3:43414013-43414032 None:intergenic 30.0%
TGTGTGTTGAATAAGAAAAG+TGG + chr3_3:43414119-43414138 None:intergenic 30.0%
AATGTTAAGTTAGGAAGCTA+GGG - chr3_3:43414305-43414324 Msa0453310:CDS 30.0%
GAATTTCTTGTTAGGATTGT+TGG - chr3_3:43414333-43414352 Msa0453310:CDS 30.0%
GGAAGAAAACTCATGTTTAT+TGG - chr3_3:43414449-43414468 Msa0453310:CDS 30.0%
TATGTGAGAAAGAAAAAGGT+AGG - chr3_3:43414587-43414606 Msa0453310:intron 30.0%
AGAACTGCACTTACATAATT+TGG + chr3_3:43414860-43414879 None:intergenic 30.0%
TACAAACACAAAAGCAAAGT+TGG + chr3_3:43414907-43414926 None:intergenic 30.0%
TTGTGTTTGTACGATAAACA+TGG - chr3_3:43414916-43414935 Msa0453310:CDS 30.0%
TGTGTTTGTACGATAAACAT+GGG - chr3_3:43414917-43414936 Msa0453310:CDS 30.0%
! TAGACCACAAAATTGCATTT+TGG + chr3_3:43414945-43414964 None:intergenic 30.0%
! TTTTGTGGTCTATTTCAACA+TGG - chr3_3:43414953-43414972 Msa0453310:CDS 30.0%
TATTTCAACATGGCCAAAAA+GGG - chr3_3:43414963-43414982 Msa0453310:CDS 30.0%
AAATACTATGTGTCACATTG+TGG - chr3_3:43415109-43415128 Msa0453310:intron 30.0%
!!! TATGGGTTGTTTTTTCAGTT+TGG + chr3_3:43415239-43415258 None:intergenic 30.0%
ACTGAAAAAACAACCCATAT+CGG - chr3_3:43415240-43415259 Msa0453310:intron 30.0%
!!! AATTGGGTCATTTTAACTCT+GGG + chr3_3:43415351-43415370 None:intergenic 30.0%
!!! TAATTGGGTCATTTTAACTC+TGG + chr3_3:43415352-43415371 None:intergenic 30.0%
TTTAACTGGACCAAAATTGA+CGG - chr3_3:43415413-43415432 Msa0453310:intron 30.0%
!! ACTTTCATTTTTGTCTCAAG+TGG + chr3_3:43415480-43415499 None:intergenic 30.0%
TACAAAAAATGTCACCAGTT+GGG + chr3_3:43415606-43415625 None:intergenic 30.0%
CTTTGATTACTTCAATTCGA+AGG - chr3_3:43415767-43415786 Msa0453310:intron 30.0%
!! ATGGTTCTAAATTGTGTTTG+CGG - chr3_3:43415922-43415941 Msa0453310:intron 30.0%
ACAACATTGCAACTCAATTA+CGG + chr3_3:43416006-43416025 None:intergenic 30.0%
GTTACCATACCAAATGAAAA+TGG + chr3_3:43416112-43416131 None:intergenic 30.0%
TCACAGAGATTATACAAAAG+TGG - chr3_3:43416137-43416156 Msa0453310:intron 30.0%
!! AAAGATATGGTCTTGTCTAT+TGG + chr3_3:43416546-43416565 None:intergenic 30.0%
! ATAGACAAGACCATATCTTT+TGG - chr3_3:43416546-43416565 Msa0453310:intron 30.0%
! TAGACAAGACCATATCTTTT+GGG - chr3_3:43416547-43416566 Msa0453310:intron 30.0%
! ATGAAAAATGTAATGGGACT+AGG + chr3_3:43416695-43416714 None:intergenic 30.0%
TTTGTCTTTGTAGTGTGTAG+TGG + chr3_3:43413774-43413793 None:intergenic 35.0%
AGGATTCTTAGAAGCTCAAA+AGG - chr3_3:43413901-43413920 Msa0453310:exon 35.0%
!! AAGAATGCTGCTGATTTGAT+TGG - chr3_3:43414067-43414086 Msa0453310:CDS 35.0%
CTGCTACTGAATGTTAAGTT+AGG - chr3_3:43414296-43414315 Msa0453310:CDS 35.0%
GAATGTTAAGTTAGGAAGCT+AGG - chr3_3:43414304-43414323 Msa0453310:CDS 35.0%
GGGAAACTGAATTTCTTGTT+AGG - chr3_3:43414325-43414344 Msa0453310:CDS 35.0%
AAAGTTAACACCACTCAAGA+AGG + chr3_3:43414801-43414820 None:intergenic 35.0%
GTGTTTGTACGATAAACATG+GGG - chr3_3:43414918-43414937 Msa0453310:CDS 35.0%
CTATTTCAACATGGCCAAAA+AGG - chr3_3:43414962-43414981 Msa0453310:CDS 35.0%
AACCACTTGTGTGATATTTG+TGG - chr3_3:43414986-43415005 Msa0453310:CDS 35.0%
ACTTGTGTGATATTTGTGGT+GGG - chr3_3:43414990-43415009 Msa0453310:CDS 35.0%
TTCGTAGCCCAGATATAATT+GGG + chr3_3:43415367-43415386 None:intergenic 35.0%
TTTCGTAGCCCAGATATAAT+TGG + chr3_3:43415368-43415387 None:intergenic 35.0%
GTTAAATGAGCTAGTTCGAT+TGG + chr3_3:43415399-43415418 None:intergenic 35.0%
ATCGAACTAGCTCATTTAAC+TGG - chr3_3:43415399-43415418 Msa0453310:intron 35.0%
ATGGAAAAATTTCTCCCAAC+TGG - chr3_3:43415589-43415608 Msa0453310:intron 35.0%
CTACAAAAAATGTCACCAGT+TGG + chr3_3:43415607-43415626 None:intergenic 35.0%
GAAGAATCGACAAAGCAAAT+AGG - chr3_3:43415678-43415697 Msa0453310:intron 35.0%
! TCCATCTTCTTTGTTGTGAT+TGG - chr3_3:43415732-43415751 Msa0453310:intron 35.0%
! GTCATTAAAAGTGCAACTAC+AGG - chr3_3:43415839-43415858 Msa0453310:CDS 35.0%
ACTCTATATGTATACGAGCA+TGG - chr3_3:43415903-43415922 Msa0453310:CDS 35.0%
CACTACAAACCTTGATATTG+CGG - chr3_3:43415960-43415979 Msa0453310:intron 35.0%
! TTCATTTTGCCGCAATATCA+AGG + chr3_3:43415972-43415991 None:intergenic 35.0%
! GCATCCATTTTCATTTGGTA+TGG - chr3_3:43416105-43416124 Msa0453310:intron 35.0%
GATTATACAAAAGTGGTGCA+AGG - chr3_3:43416144-43416163 Msa0453310:intron 35.0%
TTGTTCTTAAGCCTCAATGT+AGG + chr3_3:43416209-43416228 None:intergenic 35.0%
AAACCTTCACTCCATGTTAA+AGG - chr3_3:43416277-43416296 Msa0453310:intron 35.0%
ATTCCTTTAACATGGAGTGA+AGG + chr3_3:43416283-43416302 None:intergenic 35.0%
TTCACTCCATGTTAAAGGAA+TGG - chr3_3:43416282-43416301 Msa0453310:intron 35.0%
CAATTGCCATTCCTTTAACA+TGG + chr3_3:43416291-43416310 None:intergenic 35.0%
CATGTTAAAGGAATGGCAAT+TGG - chr3_3:43416289-43416308 Msa0453310:intron 35.0%
ATTCAGAATCCAACTTCTCA+TGG - chr3_3:43416368-43416387 Msa0453310:intron 35.0%
GTGATAATACCATGAGAAGT+TGG + chr3_3:43416380-43416399 None:intergenic 35.0%
TTGGTACAAATGTTTGCACT+TGG + chr3_3:43416527-43416546 None:intergenic 35.0%
AGTAGCTCTTTCATACTAAC+AGG + chr3_3:43416650-43416669 None:intergenic 35.0%
GAATTACCAAGAGAAAAGTG+TGG - chr3_3:43416772-43416791 Msa0453310:CDS 35.0%
! GTTCCTGCTGTTTATGTGTT+TGG - chr3_3:43413923-43413942 Msa0453310:CDS 40.0%
TCACCAAACACATAAACAGC+AGG + chr3_3:43413929-43413948 None:intergenic 40.0%
TTTCCAACTAAGAAACCTGC+TGG - chr3_3:43414028-43414047 Msa0453310:CDS 40.0%
TTCCAACTAAGAAACCTGCT+GGG - chr3_3:43414029-43414048 Msa0453310:CDS 40.0%
TGATTCCCACAAAGCATGAA+AGG - chr3_3:43414473-43414492 Msa0453310:CDS 40.0%
GATTCCCACAAAGCATGAAA+GGG - chr3_3:43414474-43414493 Msa0453310:CDS 40.0%
TGAAAGGGTGACATCACAAT+TGG - chr3_3:43414489-43414508 Msa0453310:CDS 40.0%
AGATTGTGCAGTGCATTTCA+AGG - chr3_3:43414639-43414658 Msa0453310:intron 40.0%
TCTAACGTATCCTTCTTGAG+TGG - chr3_3:43414788-43414807 Msa0453310:intron 40.0%
! GGTGGTGCTGGAATATTTAA+AGG - chr3_3:43414827-43414846 Msa0453310:CDS 40.0%
! GGGTCCAAAATGCAATTTTG+TGG - chr3_3:43414938-43414957 Msa0453310:CDS 40.0%
CACCACAAATATCACACAAG+TGG + chr3_3:43414991-43415010 None:intergenic 40.0%
CACTTGTGTGATATTTGTGG+TGG - chr3_3:43414989-43415008 Msa0453310:CDS 40.0%
AAAAGCCACATGTCACATTG+CGG + chr3_3:43415038-43415057 None:intergenic 40.0%
ACTATGTGTCACATTGTGGT+TGG - chr3_3:43415113-43415132 Msa0453310:intron 40.0%
TAACTCTGGGTCAATCTGAA+CGG + chr3_3:43415338-43415357 None:intergenic 40.0%
AAAATTGACGGCTCTACTTG+CGG - chr3_3:43415425-43415444 Msa0453310:intron 40.0%
TACTTGCGGACAATGAAGTA+GGG - chr3_3:43415439-43415458 Msa0453310:intron 40.0%
! CAAAGAAGATGGATTCTGAG+AGG + chr3_3:43415725-43415744 None:intergenic 40.0%
GCCAATCACAACAAAGAAGA+TGG + chr3_3:43415736-43415755 None:intergenic 40.0%
TGGATTCGACAAACTGTTGT+GGG + chr3_3:43415812-43415831 None:intergenic 40.0%
ATGGATTCGACAAACTGTTG+TGG + chr3_3:43415813-43415832 None:intergenic 40.0%
ACAACAGTTTGTCGAATCCA+TGG - chr3_3:43415812-43415831 Msa0453310:CDS 40.0%
! CACTTTTAATGACGAAGCCA+TGG + chr3_3:43415832-43415851 None:intergenic 40.0%
GCAACTACAGGTAAACACAA+TGG - chr3_3:43415851-43415870 Msa0453310:CDS 40.0%
ATTCTGAATGAGGTCTTGGA+TGG + chr3_3:43416357-43416376 None:intergenic 40.0%
TTGGATTCTGAATGAGGTCT+TGG + chr3_3:43416361-43416380 None:intergenic 40.0%
GAGAAGTTGGATTCTGAATG+AGG + chr3_3:43416367-43416386 None:intergenic 40.0%
AAAGCTGCATGTTGTGGAAT+TGG - chr3_3:43416473-43416492 Msa0453310:intron 40.0%
ATGTTTGCACTTGGTAGACA+TGG + chr3_3:43416518-43416537 None:intergenic 40.0%
GGACTGAATCCCAAAAGATA+TGG + chr3_3:43416559-43416578 None:intergenic 40.0%
ACAGGAGATGTGTATTGTGA+TGG + chr3_3:43416632-43416651 None:intergenic 40.0%
! GGTGACTCACTTGTTGATGT+TGG - chr3_3:43413944-43413963 Msa0453310:CDS 45.0%
GTCACCCTTTCATGCTTTGT+GGG + chr3_3:43414481-43414500 None:intergenic 45.0%
TGTCACCCTTTCATGCTTTG+TGG + chr3_3:43414482-43414501 None:intergenic 45.0%
GAAGATGCTAGAGAGAGGTA+TGG + chr3_3:43414770-43414789 None:intergenic 45.0%
CGTTAGAAGATGCTAGAGAG+AGG + chr3_3:43414775-43414794 None:intergenic 45.0%
! AGTGGTGTTAACTTTGCCTC+TGG - chr3_3:43414806-43414825 Msa0453310:CDS 45.0%
AAATATTCCAGCACCACCAG+AGG + chr3_3:43414825-43414844 None:intergenic 45.0%
! CACACAAGTGGTTCCCTTTT+TGG + chr3_3:43414979-43414998 None:intergenic 45.0%
CACTTGTGTGACATTGTGGT+GGG + chr3_3:43415157-43415176 None:intergenic 45.0%
GAACCACTTGTGTGACATTG+TGG + chr3_3:43415161-43415180 None:intergenic 45.0%
!!! TCCAATGCCTCACTTTTTGG+CGG + chr3_3:43415184-43415203 None:intergenic 45.0%
!! CAGTCCAATGCCTCACTTTT+TGG + chr3_3:43415187-43415206 None:intergenic 45.0%
GACTCAGTCTAAGCCGATAT+GGG + chr3_3:43415256-43415275 None:intergenic 45.0%
TGACTCAGTCTAAGCCGATA+TGG + chr3_3:43415257-43415276 None:intergenic 45.0%
ATCTGGGCTACGAAACATAC+CGG - chr3_3:43415373-43415392 Msa0453310:intron 45.0%
AATGAGCTAGTTCGATTGGC+CGG + chr3_3:43415395-43415414 None:intergenic 45.0%
! GCAAGTAGAGCCGTCAATTT+TGG + chr3_3:43415426-43415445 None:intergenic 45.0%
CTACTTGCGGACAATGAAGT+AGG - chr3_3:43415438-43415457 Msa0453310:intron 45.0%
GGATTCGACAAACTGTTGTG+GGG + chr3_3:43415811-43415830 None:intergenic 45.0%
TCGGATGTTGTCCTACATTG+AGG - chr3_3:43416195-43416214 Msa0453310:intron 45.0%
GATGTGAAAGCTGCATGTTG+TGG - chr3_3:43416467-43416486 Msa0453310:intron 45.0%
! GTTGTGCCACACTTTTCTCT+TGG + chr3_3:43416781-43416800 None:intergenic 45.0%
CTCCCAGCAGGTTTCTTAGT+TGG + chr3_3:43414034-43414053 None:intergenic 50.0%
CAACTAAGAAACCTGCTGGG+AGG - chr3_3:43414032-43414051 Msa0453310:CDS 50.0%
! GGTATGGTGGTGAAGTTGCA+AGG + chr3_3:43414754-43414773 None:intergenic 50.0%
! GATGCTAGAGAGAGGTATGG+TGG + chr3_3:43414767-43414786 None:intergenic 50.0%
GGTGTTAACTTTGCCTCTGG+TGG - chr3_3:43414809-43414828 Msa0453310:CDS 50.0%
CCACATGTCACATTGCGGTT+GGG + chr3_3:43415033-43415052 None:intergenic 50.0%
CCACTTGTGTGACATTGTGG+TGG + chr3_3:43415158-43415177 None:intergenic 50.0%
CCACCACAATGTCACACAAG+TGG - chr3_3:43415155-43415174 Msa0453310:intron 50.0%
!!! CCAATGCCTCACTTTTTGGC+GGG + chr3_3:43415183-43415202 None:intergenic 50.0%
CAGTTTGGTCCACTGAACTG+CGG + chr3_3:43415224-43415243 None:intergenic 50.0%
GCAAGGAGATTCGAGATTGC+TGG - chr3_3:43416161-43416180 Msa0453310:intron 50.0%
GAGATTCGAGATTGCTGGTG+TGG - chr3_3:43416166-43416185 Msa0453310:intron 50.0%
ATTGCTGGTGTGGCTGCAAT+CGG - chr3_3:43416176-43416195 Msa0453310:intron 50.0%
GGATTCAGTCCATCCTACTG+AGG - chr3_3:43416568-43416587 Msa0453310:intron 50.0%
GAGTTACTGCCTCAGTAGGA+TGG + chr3_3:43416580-43416599 None:intergenic 50.0%
ATGCGAGTTACTGCCTCAGT+AGG + chr3_3:43416584-43416603 None:intergenic 50.0%
CCATTGCAAAACCTCCCAGC+AGG + chr3_3:43414046-43414065 None:intergenic 55.0%
! CCTGCTGGGAGGTTTTGCAA+TGG - chr3_3:43414043-43414062 Msa0453310:CDS 55.0%
! AACTTTGCCTCTGGTGGTGC+TGG - chr3_3:43414815-43414834 Msa0453310:CDS 55.0%
CCCAACCGCAATGTGACATG+TGG - chr3_3:43415030-43415049 Msa0453310:intron 55.0%
GCCACATGTCACATTGCGGT+TGG + chr3_3:43415034-43415053 None:intergenic 55.0%
GTGGTTCCCGCCAAAAAGTG+AGG - chr3_3:43415174-43415193 Msa0453310:intron 55.0%
CCCGCCAAAAAGTGAGGCAT+TGG - chr3_3:43415180-43415199 Msa0453310:intron 55.0%
TTTGGTCCACTGAACTGCGG+CGG + chr3_3:43415221-43415240 None:intergenic 55.0%
CCACTGAACTGCGGCGGCTC+AGG + chr3_3:43415215-43415234 None:intergenic 70.0%
CCTGAGCCGCCGCAGTTCAG+TGG - chr3_3:43415212-43415231 Msa0453310:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 43413739 43416924 43413739 ID=Msa0453310;Name=Msa0453310
chr3_3 mRNA 43413739 43416924 43413739 ID=Msa0453310-mRNA-1;Parent=Msa0453310;Name=Msa0453310-mRNA-1;_AED=0.23;_eAED=0.23;_QI=109|1|1|1|1|1|5|164|383
chr3_3 exon 43413739 43414204 43413739 ID=Msa0453310-mRNA-1:exon:7954;Parent=Msa0453310-mRNA-1
chr3_3 exon 43414274 43414520 43414274 ID=Msa0453310-mRNA-1:exon:7953;Parent=Msa0453310-mRNA-1
chr3_3 exon 43414803 43415036 43414803 ID=Msa0453310-mRNA-1:exon:7952;Parent=Msa0453310-mRNA-1
chr3_3 exon 43415798 43415925 43415798 ID=Msa0453310-mRNA-1:exon:7951;Parent=Msa0453310-mRNA-1
chr3_3 exon 43416575 43416924 43416575 ID=Msa0453310-mRNA-1:exon:7950;Parent=Msa0453310-mRNA-1
chr3_3 five_prime_UTR 43416816 43416924 43416816 ID=Msa0453310-mRNA-1:five_prime_utr;Parent=Msa0453310-mRNA-1
chr3_3 CDS 43416575 43416815 43416575 ID=Msa0453310-mRNA-1:cds;Parent=Msa0453310-mRNA-1
chr3_3 CDS 43415798 43415925 43415798 ID=Msa0453310-mRNA-1:cds;Parent=Msa0453310-mRNA-1
chr3_3 CDS 43414803 43415036 43414803 ID=Msa0453310-mRNA-1:cds;Parent=Msa0453310-mRNA-1
chr3_3 CDS 43414274 43414520 43414274 ID=Msa0453310-mRNA-1:cds;Parent=Msa0453310-mRNA-1
chr3_3 CDS 43413903 43414204 43413903 ID=Msa0453310-mRNA-1:cds;Parent=Msa0453310-mRNA-1
chr3_3 three_prime_UTR 43413739 43413902 43413739 ID=Msa0453310-mRNA-1:three_prime_utr;Parent=Msa0453310-mRNA-1
Gene Sequence

>Msa0453310

ATGATGAGATTGAGAACTTCCTTTCTCTTTATCTCTTTCTTCATCTTAAGTTTAGGATTCTTAGAAGCTCAAAAGGTTCCTGCTGTTTATGTGTTTGGTGACTCACTTGTTGATGTTGGAAACAATGATTACTTGAATGGTACCTTTGCAAAAGCTATTTTACCTTACTATGGTATTGATTTTCCAACTAAGAAACCTGCTGGGAGGTTTTGCAATGGCAAGAATGCTGCTGATTTGATTGCTGAAAAAGTAGGCCTTGCAACTTCACCACCATACCTCTCTCTAGCATCTTCTAACGTATCCTTCTTGAGTGGTGTTAACTTTGCCTCTGGTGGTGCTGGAATATTTAAAGGCACAGATCCAAATTATATACGATCAATACATTTAACAAAGCAAGTGGAGTACTATTCACAAATGTATGAAGAATCGACAAAGCAAATAGGAGTATCAACACTTCAGAAACACCTCTCAGAATCCATCTTCTTTGTTGTGATTGGCAACAATGATATCTTTGATTACTTCAATTCGAAGGATCTTCAAAAGAAAAACACCCCACAACAGTTTGTCGAATCCATGGCTTCGTCATTAAAAGTGCAACTACAGAGATTATACAAAAGTGGTGCAAGGAGATTCGAGATTGCTGGTGTGGCTGCAATCGGATGTTGTCCTACATTGAGGCTTAAGAACAAAACAGAATGCTTCTCAGAAGCCAATTTATTGTCAGTTAAATACAATGAAAACCTTCACTCCATGTTAAAGGAATGGCAATTGGAGAGCAAGAACTTAAGTTACTCATACTTTGATACTTATGCTGCCATCCAAGACCTCATTCAGAATCCAACTTCTCATGGATTTGTAGATGTGAAAGCTGCATGTTGTGGAATTGGTGAACTGAATGCTGAACTTCCATGTCTACCAAGTGCAAACATTTGTACCAATAGACAAGACCATATCTTTTGGGATTCAGTCCATCCTACTGAGGCAGTAACTCGCATAATTGTCGATAGACTTTATAATGGACCATCACAATACACATCTCCTGTTAGTATGAAAGAGCTACTTCATGTATCAATTGCTAAATCACCTAGTCCCATTACATTTTTCATTTTATTGAGTTTGTTGGTTACTTGTTATCAAACACAAACAAATTAG
Protein sequence

>Msa0453310

MMRLRTSFLFISFFILSLGFLEAQKVPAVYVFGDSLVDVGNNDYLNGTFAKAILPYYGIDFPTKKPAGRFCNGKNAADLIAEKVGLATSPPYLSLASSNVSFLSGVNFASGGAGIFKGTDPNYIRSIHLTKQVEYYSQMYEESTKQIGVSTLQKHLSESIFFVVIGNNDIFDYFNSKDLQKKNTPQQFVESMASSLKVQLQRLYKSGARRFEIAGVAAIGCCPTLRLKNKTECFSEANLLSVKYNENLHSMLKEWQLESKNLSYSYFDTYAAIQDLIQNPTSHGFVDVKAACCGIGELNAELPCLPSANICTNRQDHIFWDSVHPTEAVTRIIVDRLYNGPSQYTSPVSMKELLHVSIAKSPSPITFFILLSLLVTCYQTQTN*