AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1260380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1260380 MtrunA17_Chr4g0061671 94.152 171 10 0 1 171 1 171 1.39e-117 333
Msa1260380 MtrunA17_Chr6g0455511 54.545 253 94 7 1 235 1 250 3.85e-82 245
Msa1260380 MtrunA17_Chr7g0220111 53.386 251 99 6 1 235 1 249 4.83e-80 240
Msa1260380 MtrunA17_Chr5g0420091 57.619 210 79 3 1 208 1 202 8.38e-77 231
Msa1260380 MtrunA17_Chr3g0122251 57.339 218 80 4 1 211 1 212 2.31e-76 231
Msa1260380 MtrunA17_Chr8g0351051 53.125 224 89 8 1 218 1 214 5.39e-62 194
Msa1260380 MtrunA17_Chr8g0366231 55.882 170 69 3 1 166 1 168 8.97e-58 183
Msa1260380 MtrunA17_Chr4g0061691 55.952 168 72 1 1 166 1 168 9.56e-58 182
Msa1260380 MtrunA17_Chr5g0420081 43.697 238 114 5 1 229 1 227 7.32e-55 176
Msa1260380 MtrunA17_Chr7g0220121 45.238 210 105 5 1 202 1 208 2.73e-49 162
Msa1260380 MtrunA17_Chr6g0474371 47.977 173 87 2 1 170 1 173 2.23e-46 152
Msa1260380 MtrunA17_Chr8g0380021 41.753 194 108 3 1 192 17 207 1.78e-45 152
Msa1260380 MtrunA17_Chr2g0284911 39.906 213 111 3 1 211 16 213 2.55e-45 152
Msa1260380 MtrunA17_Chr3g0077501 45.506 178 94 2 1 176 1 177 2.78e-45 150
Msa1260380 MtrunA17_Chr1g0204111 39.256 242 134 6 1 234 17 253 5.57e-44 148
Msa1260380 MtrunA17_Chr3g0097101 44.693 179 96 2 1 177 16 193 2.06e-43 146
Msa1260380 MtrunA17_Chr4g0057151 48.810 168 83 3 1 166 1 167 3.45e-43 144
Msa1260380 MtrunA17_Chr7g0246431 47.674 172 79 4 1 166 1 167 1.02e-42 144
Msa1260380 MtrunA17_Chr8g0351031 44.186 172 92 3 1 169 1 171 1.46e-42 144
Msa1260380 MtrunA17_Chr2g0279821 41.860 172 98 2 1 171 1 171 7.04e-42 142
Msa1260380 MtrunA17_Chr8g0351041 43.210 162 88 3 1 159 1 161 9.35e-40 134
Msa1260380 MtrunA17_Chr4g0049541 38.953 172 103 2 1 171 1 171 2.42e-36 127
Msa1260380 MtrunA17_Chr4g0018421 41.420 169 96 2 1 166 1 169 1.22e-34 122
Msa1260380 MtrunA17_Chr5g0411691 36.471 170 107 1 1 170 1 169 3.42e-34 122
Msa1260380 MtrunA17_Chr8g0377561 96.552 58 2 0 1 58 1 58 9.02e-34 117
Msa1260380 MtrunA17_Chr5g0412461 36.493 211 126 4 1 204 1 210 5.66e-33 119
Msa1260380 MtrunA17_Chr5g0412271 40.237 169 98 2 1 167 1 168 2.58e-32 117
Msa1260380 MtrunA17_Chr8g0377551 55.455 110 46 1 63 169 1 110 4.25e-32 115
Msa1260380 MtrunA17_Chr7g0246381 86.885 61 8 0 1 61 1 61 1.14e-31 110
Msa1260380 MtrunA17_Chr4g0020221 37.433 187 90 4 1 172 1 175 2.80e-31 115
Msa1260380 MtrunA17_Chr2g0308251 68.000 75 24 0 1 75 1 75 2.84e-31 110
Msa1260380 MtrunA17_Chr5g0427401 36.628 172 104 3 1 170 1 169 4.12e-31 114
Msa1260380 MtrunA17_Chr3g0125241 43.056 144 78 2 1 143 26 166 5.95e-31 113
Msa1260380 MtrunA17_Chr1g0164791 36.464 181 91 4 1 166 1 172 1.59e-30 113
Msa1260380 MtrunA17_Chr4g0061681 71.605 81 2 3 169 235 4 77 4.08e-30 107
Msa1260380 MtrunA17_Chr1g0159661 42.069 145 80 2 1 144 1 142 1.55e-28 106
Msa1260380 MtrunA17_Chr4g0049901 33.171 205 120 4 1 191 27 228 2.20e-28 107
Msa1260380 MtrunA17_Chr1g0173161 69.565 69 21 0 1 69 1 69 3.34e-27 100
Msa1260380 MtrunA17_Chr3g0142191 39.735 151 85 3 1 149 1 147 6.21e-25 98.2
Msa1260380 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 2.59e-23 89.4
Msa1260380 MtrunA17_Chr5g0404951 31.250 176 117 2 1 173 1 175 1.09e-21 89.7
Msa1260380 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 6.24e-21 84.7
Msa1260380 MtrunA17_Chr3g0134451 57.143 70 30 0 1 70 1 70 1.04e-20 88.6
Msa1260380 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 1.10e-20 83.6
Msa1260380 MtrunA17_Chr2g0308271 34.000 150 85 4 28 174 9 147 1.06e-19 84.0
Msa1260380 MtrunA17_Chr1g0166611 77.778 45 10 0 16 60 20 64 1.99e-18 78.6
Msa1260380 MtrunA17_Chr2g0292791 33.333 225 116 11 2 211 9 214 3.53e-18 80.5
Msa1260380 MtrunA17_Chr1g0206701 29.565 230 118 11 2 211 9 214 7.43e-16 74.3
Msa1260380 MtrunA17_Chr8g0379021 34.043 141 75 5 2 126 12 150 4.26e-15 70.9
Msa1260380 MtrunA17_Chr1g0208581 53.571 56 26 0 2 57 9 64 7.07e-15 71.2
Msa1260380 MtrunA17_Chr3g0089141 51.786 56 27 0 2 57 9 64 8.31e-15 71.2
Msa1260380 MtrunA17_Chr1g0208561 51.786 56 27 0 2 57 9 64 8.31e-15 71.2
Msa1260380 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.20e-14 68.6
Msa1260380 MtrunA17_Chr2g0333981 40.000 95 55 2 1 95 11 103 1.29e-14 69.7
Msa1260380 MtrunA17_Chr8g0376821 35.252 139 69 4 1 136 1 121 1.84e-14 69.3
Msa1260380 MtrunA17_Chr3g0099421 55.357 56 25 0 2 57 34 89 1.91e-14 70.5
Msa1260380 MtrunA17_Chr2g0325971 50.000 56 28 0 2 57 9 64 2.19e-14 70.1
Msa1260380 MtrunA17_Chr8g0357771 46.774 62 33 0 1 62 1 62 2.44e-14 68.9
Msa1260380 MtrunA17_Chr1g0149391 55.357 56 25 0 2 57 9 64 3.94e-14 69.3
Msa1260380 MtrunA17_Chr3g0099411 51.786 56 27 0 2 57 9 64 5.83e-14 68.6
Msa1260380 MtrunA17_Chr5g0419601 54.386 57 26 0 1 57 8 64 6.97e-14 68.6
Msa1260380 MtrunA17_Chr1g0175611 35.036 137 72 6 1 136 1 121 8.81e-14 67.0
Msa1260380 MtrunA17_Chr8g0355091 51.786 56 27 0 2 57 9 64 9.32e-14 68.6
Msa1260380 MtrunA17_Chr1g0206721 51.786 56 27 0 2 57 9 64 9.70e-14 68.2
Msa1260380 MtrunA17_Chr4g0052061 45.902 61 33 0 1 61 1 61 1.36e-13 66.2
Msa1260380 MtrunA17_Chr1g0187361 51.786 56 27 0 2 57 9 64 1.58e-13 67.8
Msa1260380 MtrunA17_Chr1g0169761 34.351 131 71 3 1 131 1 116 1.60e-13 66.6
Msa1260380 MtrunA17_Chr1g0188671 51.786 56 27 0 2 57 47 102 2.00e-13 67.8
Msa1260380 MtrunA17_Chr2g0317451 52.632 57 27 0 2 58 9 65 2.05e-13 67.4
Msa1260380 MtrunA17_Chr2g0317481 52.632 57 27 0 2 58 9 65 2.20e-13 67.4
Msa1260380 MtrunA17_Chr5g0422421 53.571 56 26 0 2 57 9 64 5.39e-13 66.2
Msa1260380 MtrunA17_Chr1g0206991 33.974 156 82 6 2 155 9 145 6.00e-13 65.1
Msa1260380 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 6.25e-13 67.0
Msa1260380 MtrunA17_Chr5g0422941 52.632 57 27 0 2 58 9 65 6.38e-13 66.2
Msa1260380 MtrunA17_Chr1g0180591 47.368 57 30 0 1 57 1 57 7.50e-13 64.7
Msa1260380 MtrunA17_Chr1g0175601 31.447 159 86 5 1 154 1 141 7.56e-13 64.7
Msa1260380 MtrunA17_Chr4g0074101 47.368 57 30 0 1 57 1 57 9.14e-13 65.1
Msa1260380 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 9.49e-13 64.7
Msa1260380 MtrunA17_Chr2g0300421 47.368 57 30 0 2 58 9 65 1.56e-12 63.9
Msa1260380 MtrunA17_Chr4g0018951 34.959 123 62 4 16 126 26 142 2.86e-12 63.2
Msa1260380 MtrunA17_Chr3g0085241 29.167 168 97 6 1 148 40 205 3.16e-12 64.3
Msa1260380 MtrunA17_Chr3g0119901 28.571 168 98 6 1 148 8 173 3.91e-12 63.5
Msa1260380 MtrunA17_Chr4g0071601 42.105 95 53 2 1 95 11 103 9.91e-12 62.0
Msa1260380 MtrunA17_Chr8g0356071 42.623 61 35 0 1 61 1 61 2.06e-11 60.5
Msa1260380 MtrunA17_Chr2g0300441 48.276 58 28 1 2 57 7 64 2.83e-11 61.2
Msa1260380 MtrunA17_Chr3g0089151 44.643 56 31 0 2 57 9 64 4.01e-11 58.9
Msa1260380 MtrunA17_Chr3g0111841 50.000 54 27 0 8 61 2 55 8.58e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1260380 AT5G15800.1 68.966 174 52 2 1 172 1 174 9.01e-78 235
Msa1260380 AT2G03710.1 66.477 176 57 2 1 174 1 176 1.28e-77 234
Msa1260380 AT2G03710.2 66.477 176 57 2 1 174 1 176 1.30e-77 234
Msa1260380 AT5G15800.2 68.966 174 52 2 1 172 1 174 1.66e-77 234
Msa1260380 AT3G02310.1 67.241 174 55 2 1 172 1 174 2.04e-76 231
Msa1260380 AT2G03710.3 66.279 172 56 2 1 170 1 172 4.71e-76 228
Msa1260380 AT1G24260.1 64.481 183 59 2 1 179 1 181 8.22e-76 230
Msa1260380 AT1G24260.2 64.130 184 59 2 1 179 1 182 1.34e-75 229
Msa1260380 AT3G02310.2 67.251 171 54 2 1 169 1 171 1.50e-75 227
Msa1260380 AT1G24260.3 66.875 160 48 1 1 155 1 160 1.19e-69 214
Msa1260380 AT1G69120.2 52.809 178 82 2 1 176 1 178 1.15e-60 191
Msa1260380 AT1G69120.1 52.809 178 82 2 1 176 1 178 4.35e-60 190
Msa1260380 AT1G26310.1 44.813 241 120 4 1 229 1 240 2.01e-59 188
Msa1260380 AT5G60910.1 50.838 179 80 2 1 174 1 176 4.59e-58 184
Msa1260380 AT2G45650.1 56.395 172 73 2 1 171 1 171 4.87e-58 184
Msa1260380 AT3G61120.1 51.397 179 76 3 1 174 1 173 1.55e-50 165
Msa1260380 AT4G09960.6 43.810 210 106 5 1 199 2 210 8.07e-49 160
Msa1260380 AT4G09960.1 43.810 210 106 5 1 199 1 209 9.12e-49 160
Msa1260380 AT4G09960.5 43.810 210 106 5 1 199 11 219 1.14e-48 160
Msa1260380 AT4G18960.1 44.712 208 105 5 2 207 18 217 1.61e-48 160
Msa1260380 AT4G09960.3 43.810 210 106 5 1 199 27 235 3.03e-48 159
Msa1260380 AT4G09960.4 42.523 214 107 7 1 199 96 308 2.30e-45 154
Msa1260380 AT4G22950.2 49.143 175 81 4 1 171 1 171 3.20e-44 146
Msa1260380 AT2G42830.1 45.251 179 95 2 1 177 16 193 5.41e-44 148
Msa1260380 AT4G09960.2 42.857 210 94 6 1 199 1 195 5.75e-44 147
Msa1260380 AT2G45660.1 44.444 171 92 2 1 169 1 170 8.27e-44 147
Msa1260380 AT5G62165.3 45.614 171 90 2 1 169 1 170 1.28e-43 146
Msa1260380 AT5G62165.1 45.614 171 90 2 1 169 1 170 1.28e-43 146
Msa1260380 AT5G62165.2 45.614 171 90 2 1 169 1 170 1.28e-43 146
Msa1260380 AT3G58780.5 44.444 180 93 3 1 176 22 198 1.43e-43 147
Msa1260380 AT3G58780.1 44.444 180 93 3 1 176 16 192 1.46e-43 147
Msa1260380 AT4G22950.3 49.711 173 79 4 1 169 1 169 1.82e-43 146
Msa1260380 AT4G22950.1 49.711 173 79 4 1 169 1 169 1.82e-43 146
Msa1260380 AT2G42830.2 44.505 182 94 4 1 177 16 195 4.55e-42 143
Msa1260380 AT2G45660.2 45.223 157 83 2 1 155 1 156 5.09e-42 140
Msa1260380 AT4G11880.2 49.375 160 78 2 1 158 1 159 7.74e-42 140
Msa1260380 AT4G11880.3 49.375 160 78 2 1 158 1 159 7.74e-42 140
Msa1260380 AT5G62165.17 46.753 154 79 2 1 152 1 153 1.02e-41 140
Msa1260380 AT5G62165.12 46.753 154 79 2 1 152 1 153 1.02e-41 140
Msa1260380 AT5G62165.11 46.753 154 79 2 1 152 1 153 1.02e-41 140
Msa1260380 AT3G30260.1 46.711 152 79 1 1 150 1 152 1.27e-41 142
Msa1260380 AT4G11880.4 52.381 147 67 2 1 145 1 146 5.06e-41 140
Msa1260380 AT4G11880.1 52.381 147 67 2 1 145 1 146 5.06e-41 140
Msa1260380 AT3G58780.2 42.614 176 95 1 1 176 16 185 1.43e-40 139
Msa1260380 AT5G62165.10 44.375 160 86 2 1 158 1 159 1.69e-40 138
Msa1260380 AT5G62165.4 44.375 160 86 2 1 158 1 159 1.69e-40 138
Msa1260380 AT3G58780.3 39.216 204 94 3 1 176 16 217 6.25e-40 139
Msa1260380 AT5G62165.6 46.259 147 76 2 1 145 1 146 1.42e-39 134
Msa1260380 AT5G62165.9 46.259 147 76 2 1 145 1 146 1.42e-39 134
Msa1260380 AT5G62165.7 46.259 147 76 2 1 145 1 146 1.42e-39 134
Msa1260380 AT5G62165.8 46.259 147 76 2 1 145 1 146 1.42e-39 134
Msa1260380 AT5G62165.13 46.259 147 76 2 1 145 1 146 1.42e-39 134
Msa1260380 AT3G58780.4 48.000 150 71 3 1 146 16 162 6.44e-39 136
Msa1260380 AT3G57230.1 36.735 196 108 3 1 181 1 195 1.72e-38 134
Msa1260380 AT3G57230.4 36.735 196 108 3 1 181 1 195 1.72e-38 134
Msa1260380 AT4G37940.1 36.410 195 122 2 1 194 1 194 6.85e-37 129
Msa1260380 AT5G10140.4 43.226 155 82 1 1 155 1 149 1.20e-36 127
Msa1260380 AT5G10140.2 45.205 146 74 1 1 146 1 140 1.34e-36 127
Msa1260380 AT5G10140.1 43.275 171 91 1 1 171 1 165 2.51e-36 127
Msa1260380 AT3G57230.2 46.043 139 73 2 1 138 1 138 3.31e-36 125
Msa1260380 AT5G10140.3 45.205 146 74 1 1 146 1 140 3.62e-36 126
Msa1260380 AT2G14210.1 38.071 197 115 3 1 190 1 197 4.68e-36 127
Msa1260380 AT2G14210.2 38.071 197 115 3 1 190 1 197 5.52e-36 127
Msa1260380 AT4G24540.1 38.756 209 125 2 1 207 1 208 7.92e-36 126
Msa1260380 AT3G57390.3 42.541 181 92 4 1 171 1 179 1.54e-35 126
Msa1260380 AT3G57390.1 42.541 181 92 4 1 171 1 179 2.63e-35 126
Msa1260380 AT1G71692.1 42.328 189 90 3 1 175 1 184 3.05e-35 125
Msa1260380 AT4G37940.3 43.165 139 77 2 1 138 1 138 3.12e-34 121
Msa1260380 AT5G65050.3 39.196 199 114 4 1 198 1 193 7.82e-34 120
Msa1260380 AT5G65060.1 36.458 192 115 2 1 191 1 186 1.54e-33 120
Msa1260380 AT4G37940.4 43.165 139 77 2 1 138 1 138 2.55e-33 120
Msa1260380 AT5G65050.5 37.186 199 107 3 1 198 1 182 4.70e-33 118
Msa1260380 AT5G65060.3 37.572 173 102 1 1 173 1 167 5.59e-33 118
Msa1260380 AT5G51870.1 38.418 177 102 3 1 174 1 173 6.60e-33 119
Msa1260380 AT5G51870.4 35.149 202 119 4 1 194 1 198 1.03e-32 118
Msa1260380 AT5G51870.3 38.286 175 101 3 1 172 11 181 1.27e-32 118
Msa1260380 AT5G65050.2 39.884 173 98 2 1 173 1 167 1.36e-32 117
Msa1260380 AT2G22630.1 37.931 174 102 3 1 171 1 171 2.15e-32 118
Msa1260380 AT2G22630.2 37.931 174 102 3 1 171 1 171 2.15e-32 118
Msa1260380 AT5G62165.14 52.294 109 49 2 1 109 1 106 7.90e-32 112
Msa1260380 AT5G65070.1 40.000 170 96 1 1 170 1 164 8.23e-32 115
Msa1260380 AT2G22540.3 38.596 171 102 2 1 169 1 170 1.47e-31 116
Msa1260380 AT2G22540.1 38.596 171 102 2 1 169 1 170 1.47e-31 116
Msa1260380 AT5G13790.2 41.477 176 92 3 1 172 1 169 2.77e-31 116
Msa1260380 AT5G13790.1 40.698 172 96 2 1 172 1 166 3.17e-31 116
Msa1260380 AT5G65060.2 35.938 192 105 3 1 191 1 175 4.32e-31 113
Msa1260380 AT5G51870.2 39.073 151 78 3 1 143 1 145 1.29e-30 112
Msa1260380 AT5G51870.5 39.865 148 81 3 1 143 24 168 1.94e-30 112
Msa1260380 AT5G51860.2 35.417 192 110 6 1 188 1 182 3.37e-30 111
Msa1260380 AT5G51860.1 37.500 160 94 4 1 156 1 158 8.02e-30 110
Msa1260380 AT5G65050.1 41.718 163 86 4 1 160 1 157 1.30e-29 109
Msa1260380 AT5G65080.3 40.000 155 87 2 1 155 8 156 3.36e-29 108
Msa1260380 AT5G23260.2 38.150 173 105 2 1 172 1 172 1.45e-28 108
Msa1260380 AT5G20240.1 41.497 147 82 2 1 146 1 144 1.68e-28 107
Msa1260380 AT5G20240.2 42.657 143 78 2 1 142 1 140 2.02e-28 105
Msa1260380 AT5G23260.4 38.150 173 105 2 1 172 17 188 2.80e-28 108
Msa1260380 AT5G65070.4 41.781 146 79 1 1 146 1 140 2.99e-28 105
Msa1260380 AT2G22540.2 36.257 171 101 2 1 169 1 165 7.64e-28 106
Msa1260380 AT5G65070.2 34.826 201 94 3 1 170 1 195 5.81e-26 101
Msa1260380 AT5G23260.1 37.572 173 101 3 1 172 17 183 1.91e-25 100
Msa1260380 AT5G65070.3 34.158 202 95 3 1 170 1 196 1.97e-25 100
Msa1260380 AT5G65080.2 38.608 158 82 3 1 154 8 154 3.35e-25 98.6
Msa1260380 AT1G77080.5 37.209 172 102 1 1 172 1 166 1.32e-24 96.3
Msa1260380 AT1G77080.4 36.471 170 102 1 1 170 1 164 4.46e-24 95.5
Msa1260380 AT5G65070.5 35.955 178 77 3 1 147 1 172 4.93e-24 95.9
Msa1260380 AT5G23260.3 38.356 146 88 2 1 145 1 145 8.79e-24 95.9
Msa1260380 AT3G54340.1 35.669 157 83 3 1 149 1 147 9.09e-24 95.5
Msa1260380 AT1G77080.11 36.471 170 102 1 1 170 1 164 1.09e-23 94.0
Msa1260380 AT1G77080.2 37.647 170 96 3 1 170 1 160 3.29e-22 90.5
Msa1260380 AT1G31140.2 37.179 156 80 4 1 145 1 149 4.65e-22 90.9
Msa1260380 AT1G31140.1 37.662 154 80 4 1 145 1 147 5.56e-22 90.5
Msa1260380 AT1G77980.1 38.158 152 82 4 1 141 1 151 5.26e-21 90.1
Msa1260380 AT1G22130.1 54.286 70 32 0 1 70 1 70 9.01e-20 86.7
Msa1260380 AT1G77080.12 37.419 155 87 3 1 155 1 145 1.76e-19 82.0
Msa1260380 AT1G77080.8 31.980 197 101 2 1 170 1 191 2.66e-19 83.6
Msa1260380 AT1G69120.3 39.655 116 68 2 63 176 1 116 3.50e-19 82.4
Msa1260380 AT1G77950.3 51.429 70 34 0 1 70 1 70 9.61e-18 80.1
Msa1260380 AT1G77950.2 51.429 70 34 0 1 70 1 70 9.61e-18 80.1
Msa1260380 AT1G77950.1 51.429 70 34 0 1 70 1 70 9.61e-18 80.1
Msa1260380 AT1G77950.4 51.429 70 34 0 1 70 1 70 9.61e-18 80.1
Msa1260380 AT5G60910.2 36.522 115 65 2 63 172 1 112 9.31e-17 75.9
Msa1260380 AT4G37435.1 32.370 173 107 2 1 169 1 167 3.82e-16 74.3
Msa1260380 AT1G18750.4 43.590 78 43 1 1 77 1 78 7.23e-16 76.3
Msa1260380 AT1G18750.1 43.590 78 43 1 1 77 1 78 7.67e-16 76.3
Msa1260380 AT1G18750.3 43.590 78 43 1 1 77 1 78 1.06e-15 75.9
Msa1260380 AT1G01530.1 54.386 57 26 0 1 57 6 62 4.76e-15 72.4
Msa1260380 AT2G03060.3 44.872 78 42 1 1 77 1 78 2.78e-14 71.6
Msa1260380 AT2G03060.7 44.872 78 42 1 1 77 1 78 2.78e-14 71.6
Msa1260380 AT2G03060.1 44.872 78 42 1 1 77 1 78 2.78e-14 71.6
Msa1260380 AT2G03060.2 44.872 78 42 1 1 77 1 78 3.46e-14 71.2
Msa1260380 AT1G69540.1 26.816 179 102 4 1 173 1 156 4.67e-14 70.9
Msa1260380 AT1G69540.2 27.778 180 99 4 1 173 1 156 6.55e-14 70.5
Msa1260380 AT4G36590.1 46.575 73 35 1 2 74 7 75 1.58e-13 68.2
Msa1260380 AT1G72350.1 38.462 91 52 2 2 92 43 129 2.19e-13 67.4
Msa1260380 AT1G65360.1 47.368 57 30 0 1 57 6 62 6.85e-13 66.2
Msa1260380 AT4G18960.3 30.128 156 100 4 54 207 55 203 1.65e-12 65.5
Msa1260380 AT4G18960.2 30.128 156 100 4 54 207 55 203 1.65e-12 65.5
Msa1260380 AT5G60440.1 50.000 56 28 0 2 57 7 62 2.63e-12 65.5
Msa1260380 AT3G04100.1 45.000 60 33 0 2 61 14 73 4.28e-12 63.5
Msa1260380 AT3G66656.1 45.614 57 31 0 1 57 1 57 5.29e-12 62.8
Msa1260380 AT2G34440.1 43.860 57 32 0 1 57 1 57 7.06e-12 62.4
Msa1260380 AT1G29962.1 50.000 60 30 0 2 61 8 67 8.14e-12 62.4
Msa1260380 AT2G24840.1 28.659 164 96 4 1 144 62 224 1.21e-11 63.2
Msa1260380 AT1G47760.1 51.020 49 24 0 1 49 1 49 1.38e-11 62.0
Msa1260380 AT1G28460.1 48.333 60 31 0 2 61 8 67 5.94e-11 60.1

Find 57 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCTTTATAATCTTTA+TGG 0.069047 8_2:+62360211 None:intergenic
GATGAGAATGCTTTCTTAAA+TGG 0.191603 8_2:+62366206 None:intergenic
CTTTCAATCTCAAATATTCT+TGG 0.237440 8_2:+62363202 None:intergenic
AATGCTTTAGGAACCTTCTT+GGG 0.275687 8_2:-62363041 Msa1260380:intron
ACCTGGAACTTGTAAGTTAT+CGG 0.301270 8_2:+62361019 None:intergenic
ACAAGTTCCAGGTAGAATAT+TGG 0.334594 8_2:-62361009 Msa1260380:CDS
AACATTTACCAGAGTATCAT+TGG 0.339966 8_2:+62363342 None:intergenic
GCAACGTTAATTGTTGGTTC+AGG 0.354685 8_2:+62360111 None:intergenic
CGAGCAACTTGAAAATCATT+TGG 0.359293 8_2:-62362986 Msa1260380:CDS
TTCATAGAGTTTGCCACGGT+TGG 0.385936 8_2:+62365971 None:intergenic
AAATGCTTTAGGAACCTTCT+TGG 0.387253 8_2:-62363042 Msa1260380:intron
TCCAGGTAGAATATTGGCTT+TGG 0.396800 8_2:-62361003 Msa1260380:CDS
AGAATATTGGCTTTGGAAGC+TGG 0.410498 8_2:-62360996 Msa1260380:CDS
AGGAGGAGGAGGAGAAGGAA+AGG 0.416302 8_2:+62360950 None:intergenic
ACCGATAACTTACAAGTTCC+AGG 0.417009 8_2:-62361020 Msa1260380:CDS
GAATATGCAACGTTAATTGT+TGG 0.418239 8_2:+62360105 None:intergenic
AACTAAGTGATCTTCACAAT+CGG 0.436840 8_2:-62361960 Msa1260380:CDS
CAAGTACAGTTATAATGAAC+TGG 0.445526 8_2:-62363380 Msa1260380:CDS
CCAGAGTATCATTGGCTGGT+TGG 0.458073 8_2:+62363350 None:intergenic
AGTATCATTGGCTGGTTGGT+TGG 0.465819 8_2:+62363354 None:intergenic
GGAGGAGGAGGAGAAGGAAA+GGG 0.474867 8_2:+62360951 None:intergenic
AACCTATCTGATTGAGGAGG+AGG 0.487598 8_2:+62360936 None:intergenic
GCGTCATCCTTGAGAATGAA+TGG 0.496440 8_2:-62360280 Msa1260380:CDS
GATATTGCACAAATGAATAC+AGG 0.496917 8_2:-62363015 Msa1260380:CDS
TTTACCAGAGTATCATTGGC+TGG 0.506248 8_2:+62363346 None:intergenic
TTAACCAATACAGAAAAGCT+AGG 0.509865 8_2:-62366181 Msa1260380:five_prime_UTR
GTGCAATATCTTCCCCAAGA+AGG 0.512715 8_2:+62363028 None:intergenic
AAATAACGATCTGAGAAGTA+AGG 0.522802 8_2:-62361549 Msa1260380:intron
GAGAAGGAAAGGGTGCATGA+TGG 0.528427 8_2:+62360961 None:intergenic
ACTAAGTGATCTTCACAATC+GGG 0.530061 8_2:-62361959 Msa1260380:intron
GCAACTTGAAAATCATTTGG+AGG 0.531635 8_2:-62362983 Msa1260380:CDS
AAGCTAGGGAGTTCTACTCC+AGG 0.539620 8_2:-62366166 Msa1260380:five_prime_UTR
CTATCTGATTGAGGAGGAGG+AGG 0.540160 8_2:+62360939 None:intergenic
TATATGCAGCTACAATCCGA+TGG 0.541973 8_2:-62360326 Msa1260380:intron
ATGAATTCAGTAGCACCTCC+TGG 0.543725 8_2:-62365953 Msa1260380:intron
CTCCTCCTCCTCAATCAGAT+AGG 0.544066 8_2:-62360938 Msa1260380:intron
AAGAAATGGTGTACTCAAGA+AGG 0.552744 8_2:-62366045 Msa1260380:CDS
GTTCATTATAACTGTACTTG+TGG 0.559243 8_2:+62363383 None:intergenic
CCAACCAGCCAATGATACTC+TGG 0.559471 8_2:-62363350 Msa1260380:intron
ATATAGCATGATGAAAACAT+TGG 0.571729 8_2:-62363413 Msa1260380:intron
GTCGAATCCATTCATTCTCA+AGG 0.575307 8_2:+62360273 None:intergenic
ATGCTTTAGGAACCTTCTTG+GGG 0.577563 8_2:-62363040 Msa1260380:intron
TCCAAAGCCAATATTCTACC+TGG 0.581815 8_2:+62361002 None:intergenic
CTTATCATCTTCTCCAACCG+TGG 0.584619 8_2:-62365984 Msa1260380:CDS
AAATTAAACCTATCTGATTG+AGG 0.585591 8_2:+62360930 None:intergenic
ATATGCAGCTACAATCCGAT+GGG 0.586179 8_2:-62360325 Msa1260380:intron
TAACCAATACAGAAAAGCTA+GGG 0.599889 8_2:-62366180 Msa1260380:five_prime_UTR
AGCTAGGGAGTTCTACTCCA+GGG 0.617312 8_2:-62366165 Msa1260380:five_prime_UTR
TTTACATCAGCAGAACCCAT+CGG 0.640734 8_2:+62360310 None:intergenic
ACTTAAGAATATAAGATCGA+CGG 0.644848 8_2:-62362956 Msa1260380:CDS
ATATTGGCTTTGGAAGCTGG+TGG 0.647036 8_2:-62360993 Msa1260380:CDS
TTAAACCTATCTGATTGAGG+AGG 0.658492 8_2:+62360933 None:intergenic
TGAATTCATAGAGTTTGCCA+CGG 0.664927 8_2:+62365967 None:intergenic
GGTTCTGCTGATGTAAACGT+TGG 0.678229 8_2:-62360304 Msa1260380:CDS
AAATCTTACAACGTTCACAA+AGG 0.680204 8_2:-62363170 Msa1260380:intron
ATGGATTCGACGCTATGACG+TGG 0.697285 8_2:-62360261 Msa1260380:CDS
TAAGAATATAAGATCGACGG+AGG 0.706354 8_2:-62362953 Msa1260380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATATTTATTAACTTG+AGG + chr8_2:62360656-62360675 None:intergenic 10.0%
!! TATTCATACATATATATATT+TGG + chr8_2:62360836-62360855 None:intergenic 10.0%
!!! TTTTATCTTAGTAAAAAATA+TGG - chr8_2:62361955-62361974 Msa1260380:intron 10.0%
!!! TATAAATTAATTTAGTTTTG+AGG - chr8_2:62362611-62362630 Msa1260380:intron 10.0%
!!! TTATAATTTTATTACTTATG+TGG - chr8_2:62363015-62363034 Msa1260380:CDS 10.0%
!! AAAGTAATTAAAAAACTAAA+TGG - chr8_2:62364060-62364079 Msa1260380:intron 10.0%
!!! AAAATAGTTATTTCATTTTT+TGG - chr8_2:62364285-62364304 Msa1260380:intron 10.0%
!! TTTGTAAAAAGAAAAAAAAA+AGG + chr8_2:62364689-62364708 None:intergenic 10.0%
!! AATGTTTACATAAATAAAAA+TGG - chr8_2:62366159-62366178 Msa1260380:five_prime_UTR 10.0%
!!! ATTTATTTTTTCACAAACAA+AGG - chr8_2:62360679-62360698 Msa1260380:intron 15.0%
!!! TTTATTTTTTCACAAACAAA+GGG - chr8_2:62360680-62360699 Msa1260380:intron 15.0%
!! TGTTAAAAACATGTTTAAAT+TGG - chr8_2:62361172-62361191 Msa1260380:intron 15.0%
!! GTTAAAAACATGTTTAAATT+GGG - chr8_2:62361173-62361192 Msa1260380:intron 15.0%
!!! GTAATTTTGTTTTTGAATTT+TGG - chr8_2:62361246-62361265 Msa1260380:intron 15.0%
!!! GCAATTAATGTTTTATTTTT+TGG + chr8_2:62361539-62361558 None:intergenic 15.0%
!! TTTATTGAAGTAATAACTAT+TGG - chr8_2:62361614-62361633 Msa1260380:intron 15.0%
!! AATGATAACATATAAAATGT+AGG + chr8_2:62361930-62361949 None:intergenic 15.0%
!! TGTTATGAGAATAATATATA+TGG - chr8_2:62361986-62362005 Msa1260380:intron 15.0%
!!! TAAAAATTGAAGTATTAGTT+TGG + chr8_2:62362497-62362516 None:intergenic 15.0%
!!! AATTTTTAAGTAGAAGTTTA+TGG - chr8_2:62362509-62362528 Msa1260380:intron 15.0%
!! TAAACAAAATGATTTATGTT+TGG - chr8_2:62363528-62363547 Msa1260380:intron 15.0%
!!! CAAGTTTTTTTTATACAATT+TGG - chr8_2:62364218-62364237 Msa1260380:intron 15.0%
!! AGTAAAAAAAAGAAGAATAT+TGG + chr8_2:62364581-62364600 None:intergenic 15.0%
!!! TTAAAAAAATCTTATTTGCT+TGG - chr8_2:62364932-62364951 Msa1260380:intron 15.0%
!!! TCAATTTAAAAGTTTGTTTT+AGG + chr8_2:62365021-62365040 None:intergenic 15.0%
!! AATACATGAATGAAAAATTA+TGG - chr8_2:62365058-62365077 Msa1260380:intron 15.0%
!!! TATCATTTTTACCAAATATA+AGG - chr8_2:62365478-62365497 Msa1260380:intron 15.0%
!!! AAACGTTTTTAATGATTTAA+CGG - chr8_2:62365652-62365671 Msa1260380:intron 15.0%
!! CAATTTCTTTATAATCTTTA+TGG + chr8_2:62366108-62366127 None:intergenic 15.0%
!!! TTAAATGGTCTATTTTCTTA+TGG + chr8_2:62360098-62360117 None:intergenic 20.0%
!! ACACATAATTAGATACATAA+AGG + chr8_2:62360411-62360430 None:intergenic 20.0%
!!! ATCTAATTATGTGTTTCTTT+TGG - chr8_2:62360417-62360436 Msa1260380:intron 20.0%
!! TGTCATATTTATTTACCTAT+CGG + chr8_2:62360537-62360556 None:intergenic 20.0%
!! ATCTTAACTATATGTTTGAT+CGG + chr8_2:62360593-62360612 None:intergenic 20.0%
!! AATTGAAAACAACTATTTAC+AGG - chr8_2:62360719-62360738 Msa1260380:intron 20.0%
!! ATATATATTTGGAGACAAAA+TGG + chr8_2:62360825-62360844 None:intergenic 20.0%
!! ATATTTCCAGAATGTAAAAA+AGG - chr8_2:62361113-62361132 Msa1260380:intron 20.0%
!! TATTTCCAGAATGTAAAAAA+GGG - chr8_2:62361114-62361133 Msa1260380:intron 20.0%
!! TATATATCTGATGATTGTTA+GGG + chr8_2:62361225-62361244 None:intergenic 20.0%
!! ATATATATCTGATGATTGTT+AGG + chr8_2:62361226-62361245 None:intergenic 20.0%
!!! TTTTTGCTTATAAATGTAAC+CGG + chr8_2:62361656-62361675 None:intergenic 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG - chr8_2:62361666-62361685 Msa1260380:intron 20.0%
!!! TTTTTACTTATAAATGTGAC+CGG - chr8_2:62361767-62361786 Msa1260380:intron 20.0%
!!! ATTTTATTAAATACTCCATC+CGG + chr8_2:62361789-62361808 None:intergenic 20.0%
!!! TTTTTTTTTTCTCTCTTTCA+AGG + chr8_2:62362155-62362174 None:intergenic 20.0%
!! TACAAAAATATATAACCTTG+AGG + chr8_2:62362342-62362361 None:intergenic 20.0%
!! ATAAAAGAGGAAAATAATCA+TGG + chr8_2:62362393-62362412 None:intergenic 20.0%
!!! ATGATTATTTTCCTCTTTTA+TGG - chr8_2:62362392-62362411 Msa1260380:intron 20.0%
!!! TTTTTATAAGCAAAACATAG+GGG + chr8_2:62362753-62362772 None:intergenic 20.0%
!!! GTTTTTATAAGCAAAACATA+GGG + chr8_2:62362754-62362773 None:intergenic 20.0%
!!! TGTTTTTATAAGCAAAACAT+AGG + chr8_2:62362755-62362774 None:intergenic 20.0%
!!! TCAATGATATTGATTTCTAA+GGG + chr8_2:62362859-62362878 None:intergenic 20.0%
!!! ATCAATGATATTGATTTCTA+AGG + chr8_2:62362860-62362879 None:intergenic 20.0%
!! TAAGTAATAACTAATTTGAG+TGG - chr8_2:62363239-62363258 Msa1260380:intron 20.0%
!!! TTTTTATACGCTATTGAATA+CGG + chr8_2:62363951-62363970 None:intergenic 20.0%
!!! TATGTTTTCCATTGAAATTT+AGG - chr8_2:62364821-62364840 Msa1260380:intron 20.0%
!! AACTCATAAAACCTTATATT+TGG + chr8_2:62365492-62365511 None:intergenic 20.0%
!!! ATCATACACTTTTTTTTTTG+AGG - chr8_2:62365589-62365608 Msa1260380:intron 20.0%
!!! TCATACACTTTTTTTTTTGA+GGG - chr8_2:62365590-62365609 Msa1260380:intron 20.0%
! AGAGAGAACAAAACAAAAAT+GGG - chr8_2:62360182-62360201 Msa1260380:three_prime_UTR 25.0%
!! AATTATGTGTTTCTTTTGGT+TGG - chr8_2:62360421-62360440 Msa1260380:intron 25.0%
! TCTTAACTATATGTTTGATC+GGG + chr8_2:62360592-62360611 None:intergenic 25.0%
! CTTTACACTTTAAACAAATC+TGG + chr8_2:62360877-62360896 None:intergenic 25.0%
!!! TTTTACCCTTTTTTACATTC+TGG + chr8_2:62361122-62361141 None:intergenic 25.0%
! TATCCTTAGTTAAAACTGTT+GGG - chr8_2:62361485-62361504 Msa1260380:intron 25.0%
! ATGTATCTGGTCATAATTAT+AGG + chr8_2:62361717-62361736 None:intergenic 25.0%
! CATTCAATAACTAATGTATC+TGG + chr8_2:62361730-62361749 None:intergenic 25.0%
! AATAATCGACTAAATCACTT+CGG + chr8_2:62361817-62361836 None:intergenic 25.0%
! TCAAACTATATCACGTAATA+TGG - chr8_2:62362009-62362028 Msa1260380:intron 25.0%
! CAAACTATATCACGTAATAT+GGG - chr8_2:62362010-62362029 Msa1260380:intron 25.0%
!!! ATAATAAGTTGATGATGTGA+CGG - chr8_2:62362183-62362202 Msa1260380:intron 25.0%
! ATAAGCGAAAAACTTTATTG+AGG - chr8_2:62362289-62362308 Msa1260380:intron 25.0%
!!! ATCATGGTTTTATATTGTGT+GGG + chr8_2:62362377-62362396 None:intergenic 25.0%
!!! AATCATGGTTTTATATTGTG+TGG + chr8_2:62362378-62362397 None:intergenic 25.0%
!! ATTATTTTCCTCTTTTATGG+AGG - chr8_2:62362395-62362414 Msa1260380:intron 25.0%
! TTACACAACTGAAATGATTA+GGG + chr8_2:62362688-62362707 None:intergenic 25.0%
! ATTACACAACTGAAATGATT+AGG + chr8_2:62362689-62362708 None:intergenic 25.0%
! AACATGTAAATAGAAGTTCA+TGG + chr8_2:62362723-62362742 None:intergenic 25.0%
! ATGAACTTCTATTTACATGT+TGG - chr8_2:62362722-62362741 Msa1260380:intron 25.0%
!! TTTTATAAGCAAAACATAGG+GGG + chr8_2:62362752-62362771 None:intergenic 25.0%
! ATATAGCATGATGAAAACAT+TGG - chr8_2:62362903-62362922 Msa1260380:intron 25.0%
! CTTTCAATCTCAAATATTCT+TGG + chr8_2:62363117-62363136 None:intergenic 25.0%
!! ATTCAAGTGCAATTTTCATT+GGG + chr8_2:62363186-62363205 None:intergenic 25.0%
!! AATTCAAGTGCAATTTTCAT+TGG + chr8_2:62363187-62363206 None:intergenic 25.0%
! GAAATGTTTGTAAATGCTTT+AGG - chr8_2:62363263-62363282 Msa1260380:intron 25.0%
! ACTTAAGAATATAAGATCGA+CGG - chr8_2:62363360-62363379 Msa1260380:CDS 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr8_2:62363484-62363503 Msa1260380:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG - chr8_2:62363587-62363606 Msa1260380:intron 25.0%
! TAACGAATGAGAATTGATAA+AGG - chr8_2:62363618-62363637 Msa1260380:intron 25.0%
! AACGAATGAGAATTGATAAA+GGG - chr8_2:62363619-62363638 Msa1260380:intron 25.0%
! TTGCAATCATATTGTATGTA+TGG + chr8_2:62364196-62364215 None:intergenic 25.0%
! ATGTATGTTAAAATGTGTGT+TGG + chr8_2:62364414-62364433 None:intergenic 25.0%
!!! AAAGGTGTTGTTTAAACATT+TGG + chr8_2:62364671-62364690 None:intergenic 25.0%
! GAAAACATATGATCTGTATT+TGG + chr8_2:62364810-62364829 None:intergenic 25.0%
! AACTTGTACCTAAATTTCAA+TGG + chr8_2:62364832-62364851 None:intergenic 25.0%
! ATTGAAATTTAGGTACAAGT+TGG - chr8_2:62364831-62364850 Msa1260380:intron 25.0%
!! GGTTTTTCTTATGGTAATTT+AGG - chr8_2:62364852-62364871 Msa1260380:intron 25.0%
!!! TTGGATTAGTATTCTTACTT+TGG - chr8_2:62364951-62364970 Msa1260380:intron 25.0%
!!! GTTTTAGGTCTATAAACATA+TGG + chr8_2:62365006-62365025 None:intergenic 25.0%
! TTGAATAATGTCATACTGAT+AGG + chr8_2:62365171-62365190 None:intergenic 25.0%
! ACATTATTCAAGACTATGTT+TGG - chr8_2:62365180-62365199 Msa1260380:intron 25.0%
! CATTATTCAAGACTATGTTT+GGG - chr8_2:62365181-62365200 Msa1260380:intron 25.0%
! AAATTAAACCTATCTGATTG+AGG + chr8_2:62365389-62365408 None:intergenic 25.0%
!!! TCTTTTCATGTTTTTTTGTC+AGG - chr8_2:62365799-62365818 Msa1260380:intron 25.0%
!! ACCTTCTTTTCATGTTAATA+TGG - chr8_2:62365942-62365961 Msa1260380:intron 25.0%
GATGAGAATGCTTTCTTAAA+TGG + chr8_2:62360113-62360132 None:intergenic 30.0%
TTAACCAATACAGAAAAGCT+AGG - chr8_2:62360135-62360154 Msa1260380:three_prime_UTR 30.0%
TAACCAATACAGAAAAGCTA+GGG - chr8_2:62360136-62360155 Msa1260380:three_prime_UTR 30.0%
GAGAGAGAACAAAACAAAAA+TGG - chr8_2:62360181-62360200 Msa1260380:three_prime_UTR 30.0%
AACAAAACAAAAATGGGAAG+AGG - chr8_2:62360188-62360207 Msa1260380:three_prime_UTR 30.0%
ACAAAACAAAAATGGGAAGA+GGG - chr8_2:62360189-62360208 Msa1260380:three_prime_UTR 30.0%
! ACTTTTGCTAAGAGAAGAAA+TGG - chr8_2:62360257-62360276 Msa1260380:CDS 30.0%
!! TTTCTTTTGGTTGGAATATG+TGG - chr8_2:62360430-62360449 Msa1260380:intron 30.0%
AAAAAATCCACTTTGACAAG+AGG + chr8_2:62361013-62361032 None:intergenic 30.0%
!!! TGCTGCTTTTATTTCAAGAT+AGG - chr8_2:62361070-62361089 Msa1260380:intron 30.0%
TTCAAGATAGGTTCTTAACT+AGG - chr8_2:62361082-62361101 Msa1260380:intron 30.0%
TCAAGATAGGTTCTTAACTA+GGG - chr8_2:62361083-62361102 Msa1260380:intron 30.0%
! ATATAGAGTATTAGCAGACT+AGG - chr8_2:62361301-62361320 Msa1260380:intron 30.0%
TTTGCATTGCAATTTAAGGA+TGG - chr8_2:62361394-62361413 Msa1260380:intron 30.0%
!! GATGTTGATTTACACTTTAC+AGG + chr8_2:62361465-62361484 None:intergenic 30.0%
CTATCCTTAGTTAAAACTGT+TGG - chr8_2:62361484-62361503 Msa1260380:intron 30.0%
ATCCTTAGTTAAAACTGTTG+GGG - chr8_2:62361486-62361505 Msa1260380:intron 30.0%
! ACTTTATTGAGGAGTATAAG+AGG - chr8_2:62362300-62362319 Msa1260380:intron 30.0%
! TACAATGACTTGTAATCAAC+TGG - chr8_2:62362564-62362583 Msa1260380:intron 30.0%
!!! TAGTTTTGAGGCACTAATAT+TGG - chr8_2:62362623-62362642 Msa1260380:intron 30.0%
TACACAACTGAAATGATTAG+GGG + chr8_2:62362687-62362706 None:intergenic 30.0%
! AAAGTGTCTAATGTGTTCTA+GGG + chr8_2:62362813-62362832 None:intergenic 30.0%
!! AAAAGTGTCTAATGTGTTCT+AGG + chr8_2:62362814-62362833 None:intergenic 30.0%
! ATTTCTAAGGGAAACAAGAT+GGG + chr8_2:62362847-62362866 None:intergenic 30.0%
TCATCATGCTATATGATACA+AGG + chr8_2:62362897-62362916 None:intergenic 30.0%
GTTCATTATAACTGTACTTG+TGG + chr8_2:62362936-62362955 None:intergenic 30.0%
CAAGTACAGTTATAATGAAC+TGG - chr8_2:62362936-62362955 Msa1260380:intron 30.0%
! AACATTTACCAGAGTATCAT+TGG + chr8_2:62362977-62362996 None:intergenic 30.0%
AAATCTTACAACGTTCACAA+AGG - chr8_2:62363146-62363165 Msa1260380:intron 30.0%
GATATTGCACAAATGAATAC+AGG - chr8_2:62363301-62363320 Msa1260380:intron 30.0%
ATATTCAAAGCTGAACCAAA+CGG + chr8_2:62363410-62363429 None:intergenic 30.0%
!! ACACTGTAGAGAATTGATTT+TGG - chr8_2:62363827-62363846 Msa1260380:intron 30.0%
!! CACTGTAGAGAATTGATTTT+GGG - chr8_2:62363828-62363847 Msa1260380:intron 30.0%
TGATAATTGAAGATCCTGTT+TGG + chr8_2:62363879-62363898 None:intergenic 30.0%
AACTAAGTGATCTTCACAAT+CGG - chr8_2:62364356-62364375 Msa1260380:intron 30.0%
TTCAATACACGCTCTTTAAT+CGG - chr8_2:62364436-62364455 Msa1260380:intron 30.0%
!! GAGACTCACATAATTTTGAT+GGG + chr8_2:62364480-62364499 None:intergenic 30.0%
! TGAGACTCACATAATTTTGA+TGG + chr8_2:62364481-62364500 None:intergenic 30.0%
!! CATTGATTTGGTATAAGTCA+AGG + chr8_2:62364724-62364743 None:intergenic 30.0%
AAATAACGATCTGAGAAGTA+AGG - chr8_2:62364767-62364786 Msa1260380:intron 30.0%
!!! GTACAAGTTGGTTTTTCTTA+TGG - chr8_2:62364843-62364862 Msa1260380:intron 30.0%
TAGTATTCTTACTTTGGACA+TGG - chr8_2:62364957-62364976 Msa1260380:intron 30.0%
TAGGTCTATAAACATATGGT+GGG + chr8_2:62365002-62365021 None:intergenic 30.0%
TTAGGTCTATAAACATATGG+TGG + chr8_2:62365003-62365022 None:intergenic 30.0%
TGAATTCCAACTTGCAAATT+GGG - chr8_2:62365425-62365444 Msa1260380:intron 30.0%
ACCTTATAAGATGAACAAGT+GGG - chr8_2:62365842-62365861 Msa1260380:intron 30.0%
ATTAACATGAAAAGAAGGTC+TGG + chr8_2:62365941-62365960 None:intergenic 30.0%
GCCATATTAACATGAAAAGA+AGG + chr8_2:62365946-62365965 None:intergenic 30.0%
GAATATGCAACGTTAATTGT+TGG + chr8_2:62366214-62366233 None:intergenic 30.0%
AAGAAATGGTGTACTCAAGA+AGG - chr8_2:62360271-62360290 Msa1260380:CDS 35.0%
TGAATTCATAGAGTTTGCCA+CGG + chr8_2:62360352-62360371 None:intergenic 35.0%
GATATAAGAGAAGAGTTACC+AGG + chr8_2:62360384-62360403 None:intergenic 35.0%
TTAATTGTGTCCTCTTTCTC+AGG + chr8_2:62360502-62360521 None:intergenic 35.0%
!!! TAATTTTGAGTTCAGCCGAT+AGG - chr8_2:62360519-62360538 Msa1260380:intron 35.0%
AACTATATGTTTGATCGGGA+CGG + chr8_2:62360588-62360607 None:intergenic 35.0%
CAGTTAACATATGCAAGCTT+TGG - chr8_2:62360789-62360808 Msa1260380:intron 35.0%
TCAGATCTTCACAATGTCAT+GGG + chr8_2:62360986-62361005 None:intergenic 35.0%
TTCAGATCTTCACAATGTCA+TGG + chr8_2:62360987-62361006 None:intergenic 35.0%
TAGGAGTTACTGTTGTGATT+TGG - chr8_2:62361325-62361344 Msa1260380:intron 35.0%
TGCAAACGCAAAGTAAAAAC+AGG + chr8_2:62361380-62361399 None:intergenic 35.0%
TGCGTTTGCATTGCAATTTA+AGG - chr8_2:62361390-62361409 Msa1260380:intron 35.0%
!! CCATTTTTCTCTTTCTCTCT+TGG + chr8_2:62361422-62361441 None:intergenic 35.0%
CCAAGAGAGAAAGAGAAAAA+TGG - chr8_2:62361419-62361438 Msa1260380:intron 35.0%
!!! TTCCCCAACAGTTTTAACTA+AGG + chr8_2:62361491-62361510 None:intergenic 35.0%
TGGTTAATAACTACTCCTTC+CGG - chr8_2:62361634-62361653 Msa1260380:intron 35.0%
TGCTTATAAATGTAACCGGA+AGG + chr8_2:62361652-62361671 None:intergenic 35.0%
TACTTATAAATGTGACCGGA+TGG - chr8_2:62361771-62361790 Msa1260380:intron 35.0%
! TGTGTACTCGATTTGCAAAA+AGG - chr8_2:62362087-62362106 Msa1260380:intron 35.0%
TCAAGGTGTATACACTTACA+AGG + chr8_2:62362138-62362157 None:intergenic 35.0%
! GATTTCTAAGGGAAACAAGA+TGG + chr8_2:62362848-62362867 None:intergenic 35.0%
TGATGTAATAATGTGTCACC+TGG - chr8_2:62363083-62363102 Msa1260380:intron 35.0%
! ATATTCTTGGTAATTCTGCC+AGG + chr8_2:62363104-62363123 None:intergenic 35.0%
CTGCTTACTTTGATCTGTTA+AGG - chr8_2:62363207-62363226 Msa1260380:CDS 35.0%
!! AAATGCTTTAGGAACCTTCT+TGG - chr8_2:62363274-62363293 Msa1260380:intron 35.0%
!! AATGCTTTAGGAACCTTCTT+GGG - chr8_2:62363275-62363294 Msa1260380:intron 35.0%
CGAGCAACTTGAAAATCATT+TGG - chr8_2:62363330-62363349 Msa1260380:intron 35.0%
GCAACTTGAAAATCATTTGG+AGG - chr8_2:62363333-62363352 Msa1260380:intron 35.0%
TAAGAATATAAGATCGACGG+AGG - chr8_2:62363363-62363382 Msa1260380:CDS 35.0%
TATTCAAAGCTGAACCAAAC+GGG + chr8_2:62363409-62363428 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG - chr8_2:62363681-62363700 Msa1260380:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr8_2:62363712-62363731 Msa1260380:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG - chr8_2:62363789-62363808 Msa1260380:intron 35.0%
ATTGAAGATCCTGTTTGGTT+TGG + chr8_2:62363874-62363893 None:intergenic 35.0%
ACTAAGTGATCTTCACAATC+GGG - chr8_2:62364357-62364376 Msa1260380:intron 35.0%
TCAATACACGCTCTTTAATC+GGG - chr8_2:62364437-62364456 Msa1260380:intron 35.0%
GACTTATACCAAATCAATGC+AGG - chr8_2:62364725-62364744 Msa1260380:intron 35.0%
TACCAAATCAATGCAGGAAA+CGG - chr8_2:62364731-62364750 Msa1260380:intron 35.0%
ACCTGGAACTTGTAAGTTAT+CGG + chr8_2:62365300-62365319 None:intergenic 35.0%
ACAAGTTCCAGGTAGAATAT+TGG - chr8_2:62365307-62365326 Msa1260380:intron 35.0%
TTAAACCTATCTGATTGAGG+AGG + chr8_2:62365386-62365405 None:intergenic 35.0%
! GTTTAATTTCTCCACCATGT+GGG - chr8_2:62365400-62365419 Msa1260380:intron 35.0%
GTGAATTCCAACTTGCAAAT+TGG - chr8_2:62365424-62365443 Msa1260380:intron 35.0%
ACTTTACCCAATTTGCAAGT+TGG + chr8_2:62365434-62365453 None:intergenic 35.0%
CACCTTATAAGATGAACAAG+TGG - chr8_2:62365841-62365860 Msa1260380:intron 35.0%
TCCCACTTGTTCATCTTATA+AGG + chr8_2:62365846-62365865 None:intergenic 35.0%
TATAAGATGAACAAGTGGGA+TGG - chr8_2:62365846-62365865 Msa1260380:intron 35.0%
ATAAGATGAACAAGTGGGAT+GGG - chr8_2:62365847-62365866 Msa1260380:intron 35.0%
GGACAATGCGTTATTATATG+CGG + chr8_2:62365898-62365917 None:intergenic 35.0%
!! ACTCCCTAGCTTTTCTGTAT+TGG + chr8_2:62360142-62360161 None:intergenic 40.0%
ATAAGAGAAGAGTTACCAGG+AGG + chr8_2:62360381-62360400 None:intergenic 40.0%
ACTGCTGAGAACTCATGTTT+AGG + chr8_2:62360773-62360792 None:intergenic 40.0%
TGAAACTCCTCTTGTCAAAG+TGG - chr8_2:62361003-62361022 Msa1260380:CDS 40.0%
! TGATTGTTAGGGCTTGTTCA+TGG + chr8_2:62361214-62361233 None:intergenic 40.0%
GATGCTTGTAGTATGTACGT+AGG + chr8_2:62361272-62361291 None:intergenic 40.0%
!! TTGTGATTTGGTGTGTGAGA+TGG - chr8_2:62361337-62361356 Msa1260380:intron 40.0%
!! TGTGATTTGGTGTGTGAGAT+GGG - chr8_2:62361338-62361357 Msa1260380:intron 40.0%
ACACATTCATGCAACTTCGT+TGG + chr8_2:62362072-62362091 None:intergenic 40.0%
!! GGAGTATAAGAGGTTCTGAA+CGG - chr8_2:62362310-62362329 Msa1260380:intron 40.0%
ACTTCTCACCTCCATAAAAG+AGG + chr8_2:62362406-62362425 None:intergenic 40.0%
AGGGGTGATTCAATTTGTGT+AGG + chr8_2:62362669-62362688 None:intergenic 40.0%
! TTTACCAGAGTATCATTGGC+TGG + chr8_2:62362973-62362992 None:intergenic 40.0%
!! ATGCTTTAGGAACCTTCTTG+GGG - chr8_2:62363276-62363295 Msa1260380:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG + chr8_2:62363687-62363706 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr8_2:62363728-62363747 Msa1260380:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr8_2:62363742-62363761 Msa1260380:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr8_2:62363745-62363764 Msa1260380:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG + chr8_2:62363796-62363815 None:intergenic 40.0%
AATCGGGTTAAAATCCACGT+CGG - chr8_2:62364453-62364472 Msa1260380:intron 40.0%
TTTAAACATTTGGCTGCGAC+TGG + chr8_2:62364661-62364680 None:intergenic 40.0%
CATGGACTCTCACTCTTAAA+TGG - chr8_2:62364975-62364994 Msa1260380:intron 40.0%
ACCGATAACTTACAAGTTCC+AGG - chr8_2:62365296-62365315 Msa1260380:intron 40.0%
!! TCCAGGTAGAATATTGGCTT+TGG - chr8_2:62365313-62365332 Msa1260380:intron 40.0%
TCCAAAGCCAATATTCTACC+TGG + chr8_2:62365317-62365336 None:intergenic 40.0%
!! AGAATATTGGCTTTGGAAGC+TGG - chr8_2:62365320-62365339 Msa1260380:intron 40.0%
! GGTTTAATTTCTCCACCATG+TGG - chr8_2:62365399-62365418 Msa1260380:intron 40.0%
! CAAGTCTTATCCCACTAAGT+GGG - chr8_2:62365711-62365730 Msa1260380:intron 40.0%
! AAGTCTTATCCCACTAAGTG+GGG - chr8_2:62365712-62365731 Msa1260380:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG - chr8_2:62365810-62365829 Msa1260380:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr8_2:62365828-62365847 None:intergenic 40.0%
CAATGCGTTATTATATGCGG+TGG + chr8_2:62365895-62365914 None:intergenic 40.0%
TATATGCAGCTACAATCCGA+TGG - chr8_2:62365990-62366009 Msa1260380:CDS 40.0%
ATATGCAGCTACAATCCGAT+GGG - chr8_2:62365991-62366010 Msa1260380:CDS 40.0%
TTTACATCAGCAGAACCCAT+CGG + chr8_2:62366009-62366028 None:intergenic 40.0%
GTCGAATCCATTCATTCTCA+AGG + chr8_2:62366046-62366065 None:intergenic 40.0%
!! GCAACGTTAATTGTTGGTTC+AGG + chr8_2:62366208-62366227 None:intergenic 40.0%
CTTATCATCTTCTCCAACCG+TGG - chr8_2:62360332-62360351 Msa1260380:intron 45.0%
TTCATAGAGTTTGCCACGGT+TGG + chr8_2:62360348-62360367 None:intergenic 45.0%
ATGAATTCAGTAGCACCTCC+TGG - chr8_2:62360363-62360382 Msa1260380:intron 45.0%
TCCTCTTTCTCAGGAACTAG+AGG + chr8_2:62360493-62360512 None:intergenic 45.0%
GAGTATTAGCAGACTAGGCT+AGG - chr8_2:62361306-62361325 Msa1260380:intron 45.0%
!! TAAGAGGTTCTGAACGGAGA+AGG - chr8_2:62362316-62362335 Msa1260380:intron 45.0%
! GAAACAAGATGGGTTCTGCA+TGG + chr8_2:62362837-62362856 None:intergenic 45.0%
! AGTATCATTGGCTGGTTGGT+TGG + chr8_2:62362965-62362984 None:intergenic 45.0%
GTGCAATATCTTCCCCAAGA+AGG + chr8_2:62363291-62363310 None:intergenic 45.0%
TCTCAGAAGCCAAACCAAAC+AGG - chr8_2:62363862-62363881 Msa1260380:intron 45.0%
!! TAATTTTGATGGGACCGACG+TGG + chr8_2:62364470-62364489 None:intergenic 45.0%
!! CACCGTTTCCTGCATTGATT+TGG + chr8_2:62364736-62364755 None:intergenic 45.0%
!! ATATTGGCTTTGGAAGCTGG+TGG - chr8_2:62365323-62365342 Msa1260380:intron 45.0%
AACCTATCTGATTGAGGAGG+AGG + chr8_2:62365383-62365402 None:intergenic 45.0%
AGTTGGAATTCACTCCCACA+TGG + chr8_2:62365417-62365436 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG + chr8_2:62365713-62365732 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG - chr8_2:62365710-62365729 Msa1260380:intron 45.0%
GTTATTATATGCGGTGGCTG+GGG + chr8_2:62365889-62365908 None:intergenic 45.0%
CGTTATTATATGCGGTGGCT+GGG + chr8_2:62365890-62365909 None:intergenic 45.0%
GTGAGCATAACTCAGTTGGT+AGG + chr8_2:62365919-62365938 None:intergenic 45.0%
TCTGGTGAGCATAACTCAGT+TGG + chr8_2:62365923-62365942 None:intergenic 45.0%
GGTTCTGCTGATGTAAACGT+TGG - chr8_2:62366012-62366031 Msa1260380:CDS 45.0%
GCGTCATCCTTGAGAATGAA+TGG - chr8_2:62366036-62366055 Msa1260380:CDS 45.0%
AAGCTAGGGAGTTCTACTCC+AGG - chr8_2:62360150-62360169 Msa1260380:three_prime_UTR 50.0%
AGCTAGGGAGTTCTACTCCA+GGG - chr8_2:62360151-62360170 Msa1260380:three_prime_UTR 50.0%
! GCCTCTAGTTCCTGAGAAAG+AGG - chr8_2:62360489-62360508 Msa1260380:intron 50.0%
! CCAGAGTATCATTGGCTGGT+TGG + chr8_2:62362969-62362988 None:intergenic 50.0%
CCAACCAGCCAATGATACTC+TGG - chr8_2:62362966-62362985 Msa1260380:CDS 50.0%
GGTTAACGATATCCTGGTCG+TGG + chr8_2:62364640-62364659 None:intergenic 50.0%
! GCGACTGGTTAACGATATCC+TGG + chr8_2:62364646-62364665 None:intergenic 50.0%
! GAGAAGGAAAGGGTGCATGA+TGG + chr8_2:62365358-62365377 None:intergenic 50.0%
CTATCTGATTGAGGAGGAGG+AGG + chr8_2:62365380-62365399 None:intergenic 50.0%
CTCCTCCTCCTCAATCAGAT+AGG - chr8_2:62365378-62365397 Msa1260380:intron 50.0%
TGGAATTCACTCCCACATGG+TGG + chr8_2:62365414-62365433 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:62365716-62365735 Msa1260380:intron 50.0%
AACAAGTGGGATGGGATGTC+CGG - chr8_2:62365855-62365874 Msa1260380:intron 50.0%
GCGTTATTATATGCGGTGGC+TGG + chr8_2:62365891-62365910 None:intergenic 50.0%
ATGGATTCGACGCTATGACG+TGG - chr8_2:62366055-62366074 Msa1260380:CDS 50.0%
GTTCTCTCTCTCTCTCTCCC+TGG + chr8_2:62360171-62360190 None:intergenic 55.0%
TCTGAACGGAGAAGGCCTCA+AGG - chr8_2:62362324-62362343 Msa1260380:intron 55.0%
TGCTCAACTTCGTGCCCGTT+TGG - chr8_2:62363392-62363411 Msa1260380:CDS 55.0%
CGACTATGTAGACCACGACC+AGG - chr8_2:62364625-62364644 Msa1260380:intron 55.0%
GGAGGAGGAGGAGAAGGAAA+GGG + chr8_2:62365368-62365387 None:intergenic 55.0%
AGGAGGAGGAGGAGAAGGAA+AGG + chr8_2:62365369-62365388 None:intergenic 55.0%
GATTGAGGAGGAGGAGGAGA+AGG + chr8_2:62365374-62365393 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:62365724-62365743 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:62365725-62365744 None:intergenic 55.0%
ACAAGTGGGATGGGATGTCC+GGG - chr8_2:62365856-62365875 Msa1260380:intron 55.0%
CAAGTGGGATGGGATGTCCG+GGG - chr8_2:62365857-62365876 Msa1260380:intron 60.0%
GGTGGCTGGGGTTCGAACCC+CGG + chr8_2:62365877-62365896 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 62360094 62366244 62360094 ID=Msa1260380;Name=Msa1260380
chr8_2 mRNA 62360094 62366244 62360094 ID=Msa1260380-mRNA-1;Parent=Msa1260380;Name=Msa1260380-mRNA-1;_AED=0.25;_eAED=0.25;_QI=106|0.85|0.87|1|1|1|8|158|235
chr8_2 exon 62360094 62360339 62360094 ID=Msa1260380-mRNA-1:exon:19771;Parent=Msa1260380-mRNA-1
chr8_2 exon 62360939 62361051 62360939 ID=Msa1260380-mRNA-1:exon:19770;Parent=Msa1260380-mRNA-1
chr8_2 exon 62361550 62361591 62361550 ID=Msa1260380-mRNA-1:exon:19769;Parent=Msa1260380-mRNA-1
chr8_2 exon 62361960 62362001 62361960 ID=Msa1260380-mRNA-1:exon:19768;Parent=Msa1260380-mRNA-1
chr8_2 exon 62362954 62363053 62362954 ID=Msa1260380-mRNA-1:exon:19767;Parent=Msa1260380-mRNA-1
chr8_2 exon 62363171 62363229 62363171 ID=Msa1260380-mRNA-1:exon:19766;Parent=Msa1260380-mRNA-1
chr8_2 exon 62363351 62363429 62363351 ID=Msa1260380-mRNA-1:exon:19765;Parent=Msa1260380-mRNA-1
chr8_2 exon 62365954 62366244 62365954 ID=Msa1260380-mRNA-1:exon:19764;Parent=Msa1260380-mRNA-1
chr8_2 five_prime_UTR 62366139 62366244 62366139 ID=Msa1260380-mRNA-1:five_prime_utr;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62365954 62366138 62365954 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62363351 62363429 62363351 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62363171 62363229 62363171 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62362954 62363053 62362954 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62361960 62362001 62361960 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62361550 62361591 62361550 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62360939 62361051 62360939 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 CDS 62360252 62360339 62360252 ID=Msa1260380-mRNA-1:cds;Parent=Msa1260380-mRNA-1
chr8_2 three_prime_UTR 62360094 62360251 62360094 ID=Msa1260380-mRNA-1:three_prime_utr;Parent=Msa1260380-mRNA-1
Gene Sequence

>Msa1260380

ATGGGAAGAGGGAGAGTTGAACTAAAGAGAATAGAGAACAAAATTAATAGACAAGTCACTTTTGCTAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAACTCTATGAATTCAGTAGCACCTCCTGCATGATGAAAACATTGGAGAAATACCACAAGTACAGTTATAATGAACTGGAGACCAACCAACCAGCCAATGATACTCTGAATTACCAAGAATATTTGAGATTGAAAGCACATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTTGGGGAAGATATTGCACAAATGAATACAGGTGAGCTCGAGCAACTTGAAAATCATTTGGAGGCAGCACTTAAGAATATAAGATCGACGGAGACTCAATTCATGCTTGATCAACTAAGTGATCTTCACAATCGGGAAACGGTGCTTGTTGAAACAAATAACGATCTGAGAAGTAAGTTAGAAGAAACCGATAACTTACAAGTTCCAGGTAGAATATTGGCTTTGGAAGCTGGTGGATCTAATTTCCATCATGCACCCTTTCCTTCTCCTCCTCCTCCTCAATCAGATAGCTACAATCCGATGGGTTCTGCTGATGTAAACGTTGGAGCGTCATCCTTGAGAATGAATGGATTCGACGCTATGACGTGGATGCTCTAA
Protein sequence

>Msa1260380

MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYSYNELETNQPANDTLNYQEYLRLKAHVEILQRSQRNLLGEDIAQMNTGELEQLENHLEAALKNIRSTETQFMLDQLSDLHNRETVLVETNNDLRSKLEETDNLQVPGRILALEAGGSNFHHAPFPSPPPPQSDSYNPMGSADVNVGASSLRMNGFDAMTWML*