AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063920 MtrunA17_Chr7g0241731 95.367 259 11 1 1 258 1 259 5.99e-177 487
Msa1063920 MtrunA17_Chr4g0005861 57.708 253 93 6 2 240 13 265 7.07e-87 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063920 AT3G09050.1 60.417 192 74 2 50 241 56 245 1.94e-76 233

Find 86 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTTATCTATTGTGAATA+TGG 0.126583 7_2:+56192546 None:intergenic
TGTTATTTGATGCAAGTTTA+TGG 0.142087 7_2:-56191327 Msa1063920:three_prime_UTR
TAATCCAGTTACTCAGATTT+TGG 0.204535 7_2:+56191170 None:intergenic
TCTGCATACTTAACTCAATT+TGG 0.207885 7_2:-56191964 Msa1063920:CDS
GTGTTTGAAGCGTAACAATT+TGG 0.228424 7_2:+56192022 None:intergenic
GTTTACAATGGATAACATAA+TGG 0.286820 7_2:-56192340 Msa1063920:five_prime_UTR
TGTGTTAACAAGAAGTATTT+TGG 0.294672 7_2:+56192312 None:intergenic
TTATGTGTAGCTTATCAAAT+TGG 0.299000 7_2:-56191007 Msa1063920:three_prime_UTR
AATGTTTACCTCTTCTTCAT+TGG 0.306206 7_2:-56191538 Msa1063920:CDS
TTATTATTATCTAAACTAAA+AGG 0.316030 7_2:-56192406 Msa1063920:five_prime_UTR
ACCACCAAAATCTGAGTAAC+TGG 0.323671 7_2:-56191174 Msa1063920:three_prime_UTR
TTAGTTTAGATAATAATAAT+AGG 0.332594 7_2:+56192410 None:intergenic
CTTGTTAACACACTTAAGTT+TGG 0.336481 7_2:-56192301 Msa1063920:five_prime_UTR
GCATCAACAACAGAAGATAT+TGG 0.346985 7_2:-56191211 Msa1063920:three_prime_UTR
CCAAGTTGTAAGATTATACT+TGG 0.358332 7_2:+56191263 None:intergenic
TAAAGGCTGGTAGCGGAATC+AGG 0.365890 7_2:-56191564 Msa1063920:CDS
TGTTTGAAGCGTAACAATTT+GGG 0.372050 7_2:+56192023 None:intergenic
ATTATCATGCAGATTTCCTT+TGG 0.372621 7_2:-56191233 Msa1063920:three_prime_UTR
TTTACAATGGATAACATAAT+GGG 0.378203 7_2:-56192339 Msa1063920:five_prime_UTR
CTTGATGTTGTTCAGTTTGA+AGG 0.387068 7_2:+56192164 None:intergenic
GAAATCTGCATGATAATATC+AGG 0.387977 7_2:+56191239 None:intergenic
TTGCGTCGCCTTCGACTGAT+TGG 0.388513 7_2:-56191486 Msa1063920:CDS
GATTTATCTATTGTGAATAT+GGG 0.398080 7_2:+56192547 None:intergenic
CAAATTGGTGCATCAATCAT+AGG 0.415604 7_2:-56190992 Msa1063920:three_prime_UTR
TTCATTGTTGGTCTTTCTTG+TGG 0.426680 7_2:+56191378 None:intergenic
CCAAGTATAATCTTACAACT+TGG 0.429981 7_2:-56191263 Msa1063920:three_prime_UTR
AACGCCGAGTTTGAAAAGAT+TGG 0.433296 7_2:-56191931 Msa1063920:CDS
AGCGGAGTTTGAAGTTCAAA+TGG 0.433795 7_2:-56191698 Msa1063920:CDS
TTCTCAAGGTACATTTCTAA+AGG 0.441899 7_2:+56191084 None:intergenic
TGTGTCTCTGCAAGTCCAAT+GGG 0.442284 7_2:-56192098 Msa1063920:CDS
CAGTTTGAAGGAAGGATGTA+GGG 0.450731 7_2:+56192176 None:intergenic
TCCGCTACCAGCCTTTAGTC+TGG 0.451103 7_2:+56191570 None:intergenic
ATGTTAAACTGAGGGAGAAA+GGG 0.456833 7_2:+56192266 None:intergenic
TCAGTTTGAAGGAAGGATGT+AGG 0.456859 7_2:+56192175 None:intergenic
ATGGAAAACGGCAGAAATGA+AGG 0.459129 7_2:-56191679 Msa1063920:CDS
TTGTGTCTCTGCAAGTCCAA+TGG 0.459395 7_2:-56192099 Msa1063920:CDS
CTTTAAGAGCCTCAGAAAGA+AGG 0.460912 7_2:-56191650 Msa1063920:CDS
TATGTTAAACTGAGGGAGAA+AGG 0.470292 7_2:+56192265 None:intergenic
TTTCTTGTATCTCCTGGTTG+AGG 0.476098 7_2:+56192060 None:intergenic
GCAAACTGCAGGCATTCCCT+TGG 0.479862 7_2:-56190844 Msa1063920:three_prime_UTR
ATTCCTCGAATTCTAGCATC+TGG 0.480236 7_2:+56191767 None:intergenic
TTTGAAGTTCAAATGGAAAA+CGG 0.485912 7_2:-56191691 Msa1063920:CDS
GTCCACATCTTTGTTTACAA+TGG 0.489853 7_2:-56192352 Msa1063920:five_prime_UTR
GAAAACAACCAACTCATGAA+TGG 0.495783 7_2:-56190930 Msa1063920:three_prime_UTR
TTATCTAAACTAAAAGGTAG+TGG 0.499338 7_2:-56192400 Msa1063920:five_prime_UTR
TTGTATAGTTATTTACATGA+TGG 0.511903 7_2:+56191039 None:intergenic
GCCACAGGCCATTCATGAGT+TGG 0.521464 7_2:+56190922 None:intergenic
CAAACTGCAGGCATTCCCTT+GGG 0.522422 7_2:-56190843 None:intergenic
ATATCCACTGAAGGGTAGGT+TGG 0.524297 7_2:-56192439 Msa1063920:intron
AATTTGATAAGCTACACATA+AGG 0.524582 7_2:+56191009 None:intergenic
AAACTACTGTAAAGGTCAGC+AGG 0.526715 7_2:+56191515 None:intergenic
ATCTAGATATTCTGTAAGAC+GGG 0.527164 7_2:+56191993 None:intergenic
ATCTGCAGAAATTAACAGAC+AGG 0.528683 7_2:-56191746 Msa1063920:CDS
AGCTTGAGAATCAGACCCAT+TGG 0.534125 7_2:+56192083 None:intergenic
GAGCCAGATGCTAGAATTCG+AGG 0.536260 7_2:-56191770 Msa1063920:CDS
TCTTCTGTTGTTGATGCCAA+AGG 0.541580 7_2:+56191217 None:intergenic
AATAGAATAAACTACTGTAA+AGG 0.541708 7_2:+56191507 None:intergenic
TAAAGATGTCACCAGACTAA+AGG 0.542082 7_2:-56191581 Msa1063920:CDS
AGCAATCATCTTCATAACAA+TGG 0.553500 7_2:+56192206 None:intergenic
TGTTAAACTGAGGGAGAAAG+GGG 0.556541 7_2:+56192267 None:intergenic
GATGCAAATTTAGCTTCTCA+AGG 0.558143 7_2:+56191070 None:intergenic
TTTAGACAACTGCAAACTGC+AGG 0.560060 7_2:-56190855 Msa1063920:three_prime_UTR
GATTCTCAAGCTCCTCAACC+AGG 0.562806 7_2:-56192072 Msa1063920:CDS
CATCTAGATATTCTGTAAGA+CGG 0.566295 7_2:+56191992 None:intergenic
AGAGCGCGAAAATGAATTAG+CGG 0.567801 7_2:-56191716 Msa1063920:CDS
AAGAAAGACCAACAATGAAG+AGG 0.568026 7_2:-56191374 Msa1063920:CDS
GTTTAGATAATAATAATAGG+AGG 0.568405 7_2:+56192413 None:intergenic
TTAACAGATAACAGCGAACA+TGG 0.573660 7_2:-56191794 Msa1063920:intron
ACCAGACTAAAGGCTGGTAG+CGG 0.574115 7_2:-56191571 Msa1063920:CDS
CAAGTATAATCTTACAACTT+GGG 0.575866 7_2:-56191262 Msa1063920:three_prime_UTR
ATGGAAGTATGTATTTGCAA+AGG 0.577178 7_2:+56192225 None:intergenic
TCAGCAGGCCAATGAAGAAG+AGG 0.579281 7_2:+56191530 None:intergenic
CAACAGGTACCTTCTTTCTG+AGG 0.582699 7_2:+56191641 None:intergenic
AAAGAAATATGTTAAACTGA+GGG 0.587300 7_2:+56192258 None:intergenic
ATTTATCTATTGTGAATATG+GGG 0.590515 7_2:+56192548 None:intergenic
CAAGTTGTAAGATTATACTT+GGG 0.590751 7_2:+56191264 None:intergenic
AAAAGAAATATGTTAAACTG+AGG 0.593006 7_2:+56192257 None:intergenic
ATCCATTGTAAACAAAGATG+TGG 0.596047 7_2:+56192350 None:intergenic
ATCATGTAAATAACTATACA+AGG 0.596514 7_2:-56191037 Msa1063920:three_prime_UTR
GATGTCACCAGACTAAAGGC+TGG 0.604550 7_2:-56191577 Msa1063920:CDS
TGGAAAACGGCAGAAATGAA+GGG 0.610002 7_2:-56191678 Msa1063920:CDS
ATGTTGTTCAGTTTGAAGGA+AGG 0.625091 7_2:+56192168 None:intergenic
TGATAAAGCAAAAGCCAAAG+AGG 0.625476 7_2:-56191617 Msa1063920:CDS
TAAAGCAAAAGCCAAAGAGG+AGG 0.659588 7_2:-56191614 Msa1063920:CDS
ACAATGGATAACATAATGGG+AGG 0.686738 7_2:-56192336 Msa1063920:five_prime_UTR
ACCAACTCATGAATGGCCTG+TGG 0.696406 7_2:-56190923 Msa1063920:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTAGATAATAATAAT+AGG + chr7_2:56190984-56191003 None:intergenic 10.0%
!! TTATTATTATCTAAACTAAA+AGG - chr7_2:56190985-56191004 Msa1063920:three_prime_UTR 10.0%
!! TTAGTTTAGATAATAATAAT+AGG + chr7_2:56190984-56191003 None:intergenic 10.0%
!! TTATTATTATCTAAACTAAA+AGG - chr7_2:56190985-56191004 Msa1063920:three_prime_UTR 10.0%
!!! TTTTTTATTTACATTTGACA+TGG + chr7_2:56191553-56191572 None:intergenic 15.0%
!! AAATACAAAATGAATATAAG+AGG + chr7_2:56191579-56191598 None:intergenic 15.0%
!!! TTTTTTATTTACATTTGACA+TGG + chr7_2:56191553-56191572 None:intergenic 15.0%
!! AAATACAAAATGAATATAAG+AGG + chr7_2:56191579-56191598 None:intergenic 15.0%
!! GATTTATCTATTGTGAATAT+GGG + chr7_2:56190847-56190866 None:intergenic 20.0%
!! TGATTTATCTATTGTGAATA+TGG + chr7_2:56190848-56190867 None:intergenic 20.0%
!! GTTTAGATAATAATAATAGG+AGG + chr7_2:56190981-56191000 None:intergenic 20.0%
!! TTTACAATGGATAACATAAT+GGG - chr7_2:56191052-56191071 Msa1063920:three_prime_UTR 20.0%
!! AAAGAAATATGTTAAACTGA+GGG + chr7_2:56191136-56191155 None:intergenic 20.0%
!! AAAAGAAATATGTTAAACTG+AGG + chr7_2:56191137-56191156 None:intergenic 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_2:56191887-56191906 None:intergenic 20.0%
!! TTGTATAGTTATTTACATGA+TGG + chr7_2:56192355-56192374 None:intergenic 20.0%
!! ATCATGTAAATAACTATACA+AGG - chr7_2:56192354-56192373 Msa1063920:five_prime_UTR 20.0%
!!! AGTAGTTTGTTTTTGTTTTT+GGG + chr7_2:56192509-56192528 None:intergenic 20.0%
!! GATTTATCTATTGTGAATAT+GGG + chr7_2:56190847-56190866 None:intergenic 20.0%
!! TGATTTATCTATTGTGAATA+TGG + chr7_2:56190848-56190867 None:intergenic 20.0%
!! GTTTAGATAATAATAATAGG+AGG + chr7_2:56190981-56191000 None:intergenic 20.0%
!! TTTACAATGGATAACATAAT+GGG - chr7_2:56191052-56191071 Msa1063920:three_prime_UTR 20.0%
!! AAAGAAATATGTTAAACTGA+GGG + chr7_2:56191136-56191155 None:intergenic 20.0%
!! AAAAGAAATATGTTAAACTG+AGG + chr7_2:56191137-56191156 None:intergenic 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_2:56191887-56191906 None:intergenic 20.0%
!! TTGTATAGTTATTTACATGA+TGG + chr7_2:56192355-56192374 None:intergenic 20.0%
!! ATCATGTAAATAACTATACA+AGG - chr7_2:56192354-56192373 Msa1063920:five_prime_UTR 20.0%
!!! AGTAGTTTGTTTTTGTTTTT+GGG + chr7_2:56192509-56192528 None:intergenic 20.0%
! TTCAGTGGATATTTGTAATT+TGG + chr7_2:56190944-56190963 None:intergenic 25.0%
! AAATTACAAATATCCACTGA+AGG - chr7_2:56190943-56190962 Msa1063920:three_prime_UTR 25.0%
! AATTACAAATATCCACTGAA+GGG - chr7_2:56190944-56190963 Msa1063920:three_prime_UTR 25.0%
! TTATCTAAACTAAAAGGTAG+TGG - chr7_2:56190991-56191010 Msa1063920:three_prime_UTR 25.0%
! GTTTACAATGGATAACATAA+TGG - chr7_2:56191051-56191070 Msa1063920:three_prime_UTR 25.0%
!!! TGTGTTAACAAGAAGTATTT+TGG + chr7_2:56191082-56191101 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_2:56191700-56191719 Msa1063920:CDS 25.0%
!! TGTTATTTGATGCAAGTTTA+TGG - chr7_2:56192064-56192083 Msa1063920:CDS 25.0%
! CAAGTTGTAAGATTATACTT+GGG + chr7_2:56192130-56192149 None:intergenic 25.0%
! CAAGTATAATCTTACAACTT+GGG - chr7_2:56192129-56192148 Msa1063920:CDS 25.0%
!!! TGTTTTTTCTGTATTGACAT+AGG + chr7_2:56192276-56192295 None:intergenic 25.0%
! AATTTGATAAGCTACACATA+AGG + chr7_2:56192385-56192404 None:intergenic 25.0%
! TTATGTGTAGCTTATCAAAT+TGG - chr7_2:56192384-56192403 Msa1063920:five_prime_UTR 25.0%
!!! GTTGTTTTCATTCATACATT+GGG + chr7_2:56192450-56192469 None:intergenic 25.0%
!!! GAGTAGTTTGTTTTTGTTTT+TGG + chr7_2:56192510-56192529 None:intergenic 25.0%
! TTCAGTGGATATTTGTAATT+TGG + chr7_2:56190944-56190963 None:intergenic 25.0%
! AAATTACAAATATCCACTGA+AGG - chr7_2:56190943-56190962 Msa1063920:three_prime_UTR 25.0%
! AATTACAAATATCCACTGAA+GGG - chr7_2:56190944-56190963 Msa1063920:three_prime_UTR 25.0%
! TTATCTAAACTAAAAGGTAG+TGG - chr7_2:56190991-56191010 Msa1063920:three_prime_UTR 25.0%
! GTTTACAATGGATAACATAA+TGG - chr7_2:56191051-56191070 Msa1063920:three_prime_UTR 25.0%
!!! TGTGTTAACAAGAAGTATTT+TGG + chr7_2:56191082-56191101 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_2:56191700-56191719 Msa1063920:CDS 25.0%
!! TGTTATTTGATGCAAGTTTA+TGG - chr7_2:56192064-56192083 Msa1063920:CDS 25.0%
! CAAGTTGTAAGATTATACTT+GGG + chr7_2:56192130-56192149 None:intergenic 25.0%
! CAAGTATAATCTTACAACTT+GGG - chr7_2:56192129-56192148 Msa1063920:CDS 25.0%
!!! TGTTTTTTCTGTATTGACAT+AGG + chr7_2:56192276-56192295 None:intergenic 25.0%
! AATTTGATAAGCTACACATA+AGG + chr7_2:56192385-56192404 None:intergenic 25.0%
! TTATGTGTAGCTTATCAAAT+TGG - chr7_2:56192384-56192403 Msa1063920:five_prime_UTR 25.0%
!!! GTTGTTTTCATTCATACATT+GGG + chr7_2:56192450-56192469 None:intergenic 25.0%
!!! GAGTAGTTTGTTTTTGTTTT+TGG + chr7_2:56192510-56192529 None:intergenic 25.0%
ATCCATTGTAAACAAAGATG+TGG + chr7_2:56191044-56191063 None:intergenic 30.0%
CTTGTTAACACACTTAAGTT+TGG - chr7_2:56191090-56191109 Msa1063920:three_prime_UTR 30.0%
! ATGGAAGTATGTATTTGCAA+AGG + chr7_2:56191169-56191188 None:intergenic 30.0%
AGCAATCATCTTCATAACAA+TGG + chr7_2:56191188-56191207 None:intergenic 30.0%
! TGTTTGAAGCGTAACAATTT+GGG + chr7_2:56191371-56191390 None:intergenic 30.0%
ATCTAGATATTCTGTAAGAC+GGG + chr7_2:56191401-56191420 None:intergenic 30.0%
CATCTAGATATTCTGTAAGA+CGG + chr7_2:56191402-56191421 None:intergenic 30.0%
TCTGCATACTTAACTCAATT+TGG - chr7_2:56191427-56191446 Msa1063920:CDS 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_2:56191467-56191486 None:intergenic 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_2:56191853-56191872 Msa1063920:intron 30.0%
!! TTTGTTTTCCTCTTCATTGT+TGG + chr7_2:56192028-56192047 None:intergenic 30.0%
CCAAGTTGTAAGATTATACT+TGG + chr7_2:56192131-56192150 None:intergenic 30.0%
CCAAGTATAATCTTACAACT+TGG - chr7_2:56192128-56192147 Msa1063920:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_2:56192155-56192174 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_2:56192158-56192177 Msa1063920:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_2:56192224-56192243 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_2:56192310-56192329 None:intergenic 30.0%
!! GGTTGTTTTCATTCATACAT+TGG + chr7_2:56192451-56192470 None:intergenic 30.0%
!!! GAAATTTTTTAATCTGCCAC+AGG + chr7_2:56192487-56192506 None:intergenic 30.0%
ATCCATTGTAAACAAAGATG+TGG + chr7_2:56191044-56191063 None:intergenic 30.0%
CTTGTTAACACACTTAAGTT+TGG - chr7_2:56191090-56191109 Msa1063920:three_prime_UTR 30.0%
! ATGGAAGTATGTATTTGCAA+AGG + chr7_2:56191169-56191188 None:intergenic 30.0%
AGCAATCATCTTCATAACAA+TGG + chr7_2:56191188-56191207 None:intergenic 30.0%
! TGTTTGAAGCGTAACAATTT+GGG + chr7_2:56191371-56191390 None:intergenic 30.0%
ATCTAGATATTCTGTAAGAC+GGG + chr7_2:56191401-56191420 None:intergenic 30.0%
CATCTAGATATTCTGTAAGA+CGG + chr7_2:56191402-56191421 None:intergenic 30.0%
TCTGCATACTTAACTCAATT+TGG - chr7_2:56191427-56191446 Msa1063920:CDS 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_2:56191467-56191486 None:intergenic 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_2:56191853-56191872 Msa1063920:intron 30.0%
!! TTTGTTTTCCTCTTCATTGT+TGG + chr7_2:56192028-56192047 None:intergenic 30.0%
CCAAGTTGTAAGATTATACT+TGG + chr7_2:56192131-56192150 None:intergenic 30.0%
CCAAGTATAATCTTACAACT+TGG - chr7_2:56192128-56192147 Msa1063920:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_2:56192155-56192174 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_2:56192158-56192177 Msa1063920:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_2:56192224-56192243 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_2:56192310-56192329 None:intergenic 30.0%
!! GGTTGTTTTCATTCATACAT+TGG + chr7_2:56192451-56192470 None:intergenic 30.0%
!!! GAAATTTTTTAATCTGCCAC+AGG + chr7_2:56192487-56192506 None:intergenic 30.0%
! GTCCACATCTTTGTTTACAA+TGG - chr7_2:56191039-56191058 Msa1063920:three_prime_UTR 35.0%
! ACAATGGATAACATAATGGG+AGG - chr7_2:56191055-56191074 Msa1063920:three_prime_UTR 35.0%
ATGTTAAACTGAGGGAGAAA+GGG + chr7_2:56191128-56191147 None:intergenic 35.0%
TATGTTAAACTGAGGGAGAA+AGG + chr7_2:56191129-56191148 None:intergenic 35.0%
ATGTTGTTCAGTTTGAAGGA+AGG + chr7_2:56191226-56191245 None:intergenic 35.0%
CTTGATGTTGTTCAGTTTGA+AGG + chr7_2:56191230-56191249 None:intergenic 35.0%
!!! TCTTGTTTTCTTGTATCTCC+TGG + chr7_2:56191340-56191359 None:intergenic 35.0%
! GTGTTTGAAGCGTAACAATT+TGG + chr7_2:56191372-56191391 None:intergenic 35.0%
TTAACAGATAACAGCGAACA+TGG - chr7_2:56191597-56191616 Msa1063920:CDS 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_2:56191645-56191664 Msa1063920:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_2:56191769-56191788 None:intergenic 35.0%
TGATAAAGCAAAAGCCAAAG+AGG - chr7_2:56191774-56191793 Msa1063920:CDS 35.0%
!!! AATTTTTTCTGCCTCCTCTT+TGG + chr7_2:56191791-56191810 None:intergenic 35.0%
TAAAGATGTCACCAGACTAA+AGG - chr7_2:56191810-56191829 Msa1063920:intron 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_2:56191925-56191944 Msa1063920:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_2:56191939-56191958 Msa1063920:CDS 35.0%
!! TTCATTGTTGGTCTTTCTTG+TGG + chr7_2:56192016-56192035 None:intergenic 35.0%
AAGAAAGACCAACAATGAAG+AGG - chr7_2:56192017-56192036 Msa1063920:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_2:56192180-56192199 Msa1063920:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_2:56192324-56192343 None:intergenic 35.0%
CAAATTGGTGCATCAATCAT+AGG - chr7_2:56192399-56192418 Msa1063920:five_prime_UTR 35.0%
GAAAACAACCAACTCATGAA+TGG - chr7_2:56192461-56192480 Msa1063920:intron 35.0%
! GTCCACATCTTTGTTTACAA+TGG - chr7_2:56191039-56191058 Msa1063920:three_prime_UTR 35.0%
! ACAATGGATAACATAATGGG+AGG - chr7_2:56191055-56191074 Msa1063920:three_prime_UTR 35.0%
ATGTTAAACTGAGGGAGAAA+GGG + chr7_2:56191128-56191147 None:intergenic 35.0%
TATGTTAAACTGAGGGAGAA+AGG + chr7_2:56191129-56191148 None:intergenic 35.0%
ATGTTGTTCAGTTTGAAGGA+AGG + chr7_2:56191226-56191245 None:intergenic 35.0%
CTTGATGTTGTTCAGTTTGA+AGG + chr7_2:56191230-56191249 None:intergenic 35.0%
!!! TCTTGTTTTCTTGTATCTCC+TGG + chr7_2:56191340-56191359 None:intergenic 35.0%
! GTGTTTGAAGCGTAACAATT+TGG + chr7_2:56191372-56191391 None:intergenic 35.0%
TTAACAGATAACAGCGAACA+TGG - chr7_2:56191597-56191616 Msa1063920:CDS 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_2:56191645-56191664 Msa1063920:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_2:56191769-56191788 None:intergenic 35.0%
TGATAAAGCAAAAGCCAAAG+AGG - chr7_2:56191774-56191793 Msa1063920:CDS 35.0%
!!! AATTTTTTCTGCCTCCTCTT+TGG + chr7_2:56191791-56191810 None:intergenic 35.0%
TAAAGATGTCACCAGACTAA+AGG - chr7_2:56191810-56191829 Msa1063920:intron 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_2:56191925-56191944 Msa1063920:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_2:56191939-56191958 Msa1063920:CDS 35.0%
!! TTCATTGTTGGTCTTTCTTG+TGG + chr7_2:56192016-56192035 None:intergenic 35.0%
AAGAAAGACCAACAATGAAG+AGG - chr7_2:56192017-56192036 Msa1063920:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_2:56192180-56192199 Msa1063920:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_2:56192324-56192343 None:intergenic 35.0%
CAAATTGGTGCATCAATCAT+AGG - chr7_2:56192399-56192418 Msa1063920:five_prime_UTR 35.0%
GAAAACAACCAACTCATGAA+TGG - chr7_2:56192461-56192480 Msa1063920:intron 35.0%
ACAAATATCCACTGAAGGGT+AGG - chr7_2:56190948-56190967 Msa1063920:three_prime_UTR 40.0%
TGTTAAACTGAGGGAGAAAG+GGG + chr7_2:56191127-56191146 None:intergenic 40.0%
CAGTTTGAAGGAAGGATGTA+GGG + chr7_2:56191218-56191237 None:intergenic 40.0%
TCAGTTTGAAGGAAGGATGT+AGG + chr7_2:56191219-56191238 None:intergenic 40.0%
! TGTTGTGAAGTCTTTTGCAG+TGG + chr7_2:56191261-56191280 None:intergenic 40.0%
TTTCTTGTATCTCCTGGTTG+AGG + chr7_2:56191334-56191353 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_2:56191460-56191479 Msa1063920:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_2:56191627-56191646 None:intergenic 40.0%
AGAGCGCGAAAATGAATTAG+CGG - chr7_2:56191675-56191694 Msa1063920:CDS 40.0%
! AGCGGAGTTTGAAGTTCAAA+TGG - chr7_2:56191693-56191712 Msa1063920:CDS 40.0%
ATGGAAAACGGCAGAAATGA+AGG - chr7_2:56191712-56191731 Msa1063920:CDS 40.0%
TGGAAAACGGCAGAAATGAA+GGG - chr7_2:56191713-56191732 Msa1063920:CDS 40.0%
! CTTTAAGAGCCTCAGAAAGA+AGG - chr7_2:56191741-56191760 Msa1063920:CDS 40.0%
TAAAGCAAAAGCCAAAGAGG+AGG - chr7_2:56191777-56191796 Msa1063920:CDS 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_2:56191879-56191898 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_2:56191916-56191935 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_2:56192177-56192196 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_2:56192217-56192236 Msa1063920:exon 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_2:56192221-56192240 None:intergenic 40.0%
TTTAGACAACTGCAAACTGC+AGG - chr7_2:56192536-56192555 Msa1063920:five_prime_UTR 40.0%
ACAAATATCCACTGAAGGGT+AGG - chr7_2:56190948-56190967 Msa1063920:three_prime_UTR 40.0%
TGTTAAACTGAGGGAGAAAG+GGG + chr7_2:56191127-56191146 None:intergenic 40.0%
CAGTTTGAAGGAAGGATGTA+GGG + chr7_2:56191218-56191237 None:intergenic 40.0%
TCAGTTTGAAGGAAGGATGT+AGG + chr7_2:56191219-56191238 None:intergenic 40.0%
! TGTTGTGAAGTCTTTTGCAG+TGG + chr7_2:56191261-56191280 None:intergenic 40.0%
TTTCTTGTATCTCCTGGTTG+AGG + chr7_2:56191334-56191353 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_2:56191460-56191479 Msa1063920:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_2:56191627-56191646 None:intergenic 40.0%
AGAGCGCGAAAATGAATTAG+CGG - chr7_2:56191675-56191694 Msa1063920:CDS 40.0%
! AGCGGAGTTTGAAGTTCAAA+TGG - chr7_2:56191693-56191712 Msa1063920:CDS 40.0%
ATGGAAAACGGCAGAAATGA+AGG - chr7_2:56191712-56191731 Msa1063920:CDS 40.0%
TGGAAAACGGCAGAAATGAA+GGG - chr7_2:56191713-56191732 Msa1063920:CDS 40.0%
! CTTTAAGAGCCTCAGAAAGA+AGG - chr7_2:56191741-56191760 Msa1063920:CDS 40.0%
TAAAGCAAAAGCCAAAGAGG+AGG - chr7_2:56191777-56191796 Msa1063920:CDS 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_2:56191879-56191898 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_2:56191916-56191935 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_2:56192177-56192196 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_2:56192217-56192236 Msa1063920:exon 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_2:56192221-56192240 None:intergenic 40.0%
TTTAGACAACTGCAAACTGC+AGG - chr7_2:56192536-56192555 Msa1063920:five_prime_UTR 40.0%
ATATCCACTGAAGGGTAGGT+TGG - chr7_2:56190952-56190971 Msa1063920:three_prime_UTR 45.0%
TTGTGTCTCTGCAAGTCCAA+TGG - chr7_2:56191292-56191311 Msa1063920:three_prime_UTR 45.0%
TGTGTCTCTGCAAGTCCAAT+GGG - chr7_2:56191293-56191312 Msa1063920:three_prime_UTR 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_2:56191311-56191330 None:intergenic 45.0%
AAGTGGAAGCAAGCATACTC+TGG + chr7_2:56191521-56191540 None:intergenic 45.0%
TGACATGGATAGCTCGAAAG+TGG + chr7_2:56191538-56191557 None:intergenic 45.0%
CAACAGGTACCTTCTTTCTG+AGG + chr7_2:56191753-56191772 None:intergenic 45.0%
ATATCCACTGAAGGGTAGGT+TGG - chr7_2:56190952-56190971 Msa1063920:three_prime_UTR 45.0%
TTGTGTCTCTGCAAGTCCAA+TGG - chr7_2:56191292-56191311 Msa1063920:three_prime_UTR 45.0%
TGTGTCTCTGCAAGTCCAAT+GGG - chr7_2:56191293-56191312 Msa1063920:three_prime_UTR 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_2:56191311-56191330 None:intergenic 45.0%
AAGTGGAAGCAAGCATACTC+TGG + chr7_2:56191521-56191540 None:intergenic 45.0%
TGACATGGATAGCTCGAAAG+TGG + chr7_2:56191538-56191557 None:intergenic 45.0%
CAACAGGTACCTTCTTTCTG+AGG + chr7_2:56191753-56191772 None:intergenic 45.0%
GATTCCAACCTACCCTTCAG+TGG + chr7_2:56190959-56190978 None:intergenic 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_2:56191319-56191338 Msa1063920:three_prime_UTR 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_2:56191621-56191640 Msa1063920:CDS 50.0%
GATGTCACCAGACTAAAGGC+TGG - chr7_2:56191814-56191833 Msa1063920:intron 50.0%
ACCAGACTAAAGGCTGGTAG+CGG - chr7_2:56191820-56191839 Msa1063920:intron 50.0%
!! TAAAGGCTGGTAGCGGAATC+AGG - chr7_2:56191827-56191846 Msa1063920:intron 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_2:56191864-56191883 None:intergenic 50.0%
ACCAACTCATGAATGGCCTG+TGG - chr7_2:56192468-56192487 Msa1063920:intron 50.0%
GATTCCAACCTACCCTTCAG+TGG + chr7_2:56190959-56190978 None:intergenic 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_2:56191319-56191338 Msa1063920:three_prime_UTR 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_2:56191621-56191640 Msa1063920:CDS 50.0%
GATGTCACCAGACTAAAGGC+TGG - chr7_2:56191814-56191833 Msa1063920:intron 50.0%
ACCAGACTAAAGGCTGGTAG+CGG - chr7_2:56191820-56191839 Msa1063920:intron 50.0%
!! TAAAGGCTGGTAGCGGAATC+AGG - chr7_2:56191827-56191846 Msa1063920:intron 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_2:56191864-56191883 None:intergenic 50.0%
ACCAACTCATGAATGGCCTG+TGG - chr7_2:56192468-56192487 Msa1063920:intron 50.0%
TCCGCTACCAGCCTTTAGTC+TGG + chr7_2:56191824-56191843 None:intergenic 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_2:56191905-56191924 Msa1063920:CDS 55.0%
GCCACAGGCCATTCATGAGT+TGG + chr7_2:56192472-56192491 None:intergenic 55.0%
GCAAACTGCAGGCATTCCCT+TGG - chr7_2:56192547-56192566 Msa1063920:five_prime_UTR 55.0%
TCCGCTACCAGCCTTTAGTC+TGG + chr7_2:56191824-56191843 None:intergenic 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_2:56191905-56191924 Msa1063920:CDS 55.0%
GCCACAGGCCATTCATGAGT+TGG + chr7_2:56192472-56192491 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56190844 56192569 56190844 ID=Msa1063920;Name=Msa1063920
chr7_2 mRNA 56190844 56192569 56190844 ID=Msa1063920-mRNA-1;Parent=Msa1063920;Name=Msa1063920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=307|1|1|1|0.5|0.33|3|519|258
chr7_2 exon 56190844 56191809 56190844 ID=Msa1063920-mRNA-1:exon:10589;Parent=Msa1063920-mRNA-1
chr7_2 exon 56191891 56192448 56191891 ID=Msa1063920-mRNA-1:exon:10588;Parent=Msa1063920-mRNA-1
chr7_2 exon 56192491 56192569 56192491 ID=Msa1063920-mRNA-1:exon:10587;Parent=Msa1063920-mRNA-1
chr7_2 five_prime_UTR 56192491 56192569 56192491 ID=Msa1063920-mRNA-1:five_prime_utr;Parent=Msa1063920-mRNA-1
chr7_2 five_prime_UTR 56192221 56192448 56192221 ID=Msa1063920-mRNA-1:five_prime_utr;Parent=Msa1063920-mRNA-1
chr7_2 CDS 56191891 56192220 56191891 ID=Msa1063920-mRNA-1:cds;Parent=Msa1063920-mRNA-1
chr7_2 CDS 56191363 56191809 56191363 ID=Msa1063920-mRNA-1:cds;Parent=Msa1063920-mRNA-1
chr7_2 three_prime_UTR 56190844 56191362 56190844 ID=Msa1063920-mRNA-1:three_prime_utr;Parent=Msa1063920-mRNA-1
Gene Sequence

>Msa1063920

ATGAAGATGATTGCTCTCAAATCCCTACATCCTTCCTTCAAACTGAACAACATCAAGTGTAATATCCACTGCAAAAGACTTCACAACACATGTTATACTTTGTGTCTCTGCAAGTCCAATGGGTCTGATTCTCAAGCTCCTCAACCAGGAGATACAAGAAAACAAGAACTTCTAGCCCAAATTGTTACGCTTCAAACACGAAAAGCCCGTCTTACAGAATATCTAGATGAGAGATCTGCATACTTAACTCAATTTGGTGAAAAAGTAAACGCCGAGTTTGAAAAGATTGGAGAAGATGCACTCAAAGAATTAGATGAAGCTAGTGCCAGAATAACAGCGAACATGGAGAGCCAGATGCTAGAATTCGAGGAATCTGCAGAAATTAACAGACAGGAGATTCAAGAGCGCGAAAATGAATTAGCGGAGTTTGAAGTTCAAATGGAAAACGGCAGAAATGAAGGGCTGTTCTTTAAGAGCCTCAGAAAGAAGGTACCTGTTGTTGATAAAGCAAAAGCCAAAGAGGAGGCAGAAAAAATTAAAGATGTCACCAGACTAAAGGCTGGTAGCGGAATCAGGAAAAATGTTTACCTCTTCTTCATTGGCCTGCTGACCTTTACAGTAGTTTATTCTATTGCGTCGCCTTCGACTGATTGGAGAAAAGTTGCAGTTTTTGGAGCAATTCTTGTGGCTTTGACTTCTCAGTTCGTCTATGAACAAAACATGTCAGCACAAACTAGAACCACAAGAAAGACCAACAATGAAGAGGAAAACAAATGA

Protein sequence

>Msa1063920

MKMIALKSLHPSFKLNNIKCNIHCKRLHNTCYTLCLCKSNGSDSQAPQPGDTRKQELLAQIVTLQTRKARLTEYLDERSAYLTQFGEKVNAEFEKIGEDALKELDEASARITANMESQMLEFEESAEINRQEIQERENELAEFEVQMENGRNEGLFFKSLRKKVPVVDKAKAKEEAEKIKDVTRLKAGSGIRKNVYLFFIGLLTFTVVYSIASPSTDWRKVAVFGAILVALTSQFVYEQNMSAQTRTTRKTNNEEENK*