AlfalfaGEDB | Msa1326630

M. sativa cultivar zhongmu-4 / Msa1326630

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326630	sp\|Q9SSK5\|MLP43_ARATH	34.667	150	95	3	3	150	7	155	5.02e-22	89.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326630	G7L7T5	84.076	157	24	1	1	157	1	156	1.14e-92	275

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa1326630	0.807443	5.041263e-50	-8.615850e-47
Msa0024550	Msa1326630	0.831860	1.314082e-55	-8.615850e-47
Msa0055450	Msa1326630	0.807753	4.334019e-50	-8.615850e-47
Msa0112570	Msa1326630	0.803027	4.239685e-49	-8.615850e-47
Msa0120400	Msa1326630	0.814406	1.565897e-51	-8.615850e-47
Msa0669840	Msa1326630	0.815924	7.206140e-52	-8.615850e-47
Msa0739580	Msa1326630	0.829711	4.417467e-55	-8.615850e-47
Msa0124130	Msa1326630	0.836319	1.003492e-56	-8.615850e-47
Msa0141120	Msa1326630	0.832271	1.039551e-55	-8.615850e-47
Msa0149140	Msa1326630	0.819881	9.203209e-53	-8.615850e-47
Msa0152500	Msa1326630	0.805138	1.542791e-49	-8.615850e-47
Msa0164330	Msa1326630	0.808200	3.480510e-50	-8.615850e-47
Msa0197100	Msa1326630	0.814227	1.715328e-51	-8.615850e-47
Msa0230740	Msa1326630	0.808153	3.562433e-50	-8.615850e-47
Msa0230750	Msa1326630	0.800759	1.239479e-48	-8.615850e-47
Msa1228190	Msa1326630	0.837197	5.991862e-57	-8.615850e-47
Msa1326630	Msa1374550	0.813381	2.633961e-51	-8.615850e-47
Msa1326630	Msa1394890	0.814698	1.349458e-51	-8.615850e-47
Msa1326630	Msa1406780	0.815172	1.059158e-51	-8.615850e-47
Msa1326630	Msa1421550	0.812290	4.567767e-51	-8.615850e-47
Msa1326630	Msa1431850	0.820609	6.266716e-53	-8.615850e-47
Msa1326630	Msa1459530	0.804412	2.187400e-49	-8.615850e-47
Msa1326630	Msa1462530	0.802165	6.385517e-49	-8.615850e-47
Msa0392420	Msa1326630	0.811975	5.350850e-51	-8.615850e-47
Msa0392460	Msa1326630	0.803660	3.134946e-49	-8.615850e-47
Msa0392490	Msa1326630	0.811034	8.565913e-51	-8.615850e-47
Msa0406000	Msa1326630	0.841936	3.512209e-58	-8.615850e-47
Msa0415320	Msa1326630	0.808728	2.685305e-50	-8.615850e-47
Msa0424350	Msa1326630	0.842108	3.161717e-58	-8.615850e-47
Msa0451400	Msa1326630	0.840732	7.285006e-58	-8.615850e-47
Msa0999300	Msa1326630	0.806061	9.877945e-50	-8.615850e-47
Msa0999320	Msa1326630	0.816660	4.930921e-52	-8.615850e-47
Msa0999700	Msa1326630	0.802375	5.778948e-49	-8.615850e-47
Msa1001870	Msa1326630	0.817034	4.064742e-52	-8.615850e-47
Msa1084520	Msa1326630	0.801247	9.851101e-49	-8.615850e-47
Msa0239030	Msa1326630	0.828338	9.505595e-55	-8.615850e-47
Msa0276740	Msa1326630	0.820981	5.145900e-53	-8.615850e-47
Msa0316680	Msa1326630	0.821203	4.573298e-53	-8.615850e-47
Msa0329620	Msa1326630	0.824218	9.094192e-54	-8.615850e-47
Msa0359250	Msa1326630	0.839281	1.739920e-57	-8.615850e-47
Msa1135380	Msa1326630	0.808020	3.802759e-50	-8.615850e-47
Msa0487570	Msa1326630	0.810960	8.889308e-51	-8.615850e-47
Msa0487630	Msa1326630	0.818167	2.257704e-52	-8.615850e-47
Msa0492190	Msa1326630	0.835881	1.296350e-56	-8.615850e-47
Msa0515950	Msa1326630	0.803533	3.331604e-49	-8.615850e-47
Msa0534930	Msa1326630	0.831649	1.481211e-55	-8.615850e-47
Msa0535040	Msa1326630	0.837204	5.965785e-57	-8.615850e-47
Msa0591790	Msa1326630	0.856404	3.292692e-62	-8.615850e-47
Msa0860280	Msa1326630	0.802051	6.740114e-49	-8.615850e-47
Msa0898730	Msa1326630	0.803677	3.110187e-49	-8.615850e-47
Msa0941820	Msa1326630	0.806345	8.605363e-50	-8.615850e-47
Msa0964840	Msa1326630	0.810285	1.243576e-50	-8.615850e-47
Msa0965310	Msa1326630	0.805785	1.128941e-49	-8.615850e-47
Msa0967380	Msa1326630	0.801254	9.820511e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326630	MtrunA17_Chr8g0355721	84.076	157	24	1	1	157	1	156	2.19e-96	275
Msa1326630	MtrunA17_Chr8g0355661	79.618	157	31	1	1	157	1	156	6.45e-90	258
Msa1326630	MtrunA17_Chr8g0355741	76.433	157	37	0	1	157	1	157	8.49e-89	256
Msa1326630	MtrunA17_Chr8g0355811	70.064	157	46	1	1	157	1	156	4.58e-81	236
Msa1326630	MtrunA17_Chr8g0355781	71.053	152	44	0	1	152	1	152	9.96e-81	235
Msa1326630	MtrunA17_Chr8g0355761	71.053	152	44	0	1	152	1	152	1.88e-78	229
Msa1326630	MtrunA17_Chr8g0355641	67.949	156	50	0	1	156	1	156	2.03e-78	229
Msa1326630	MtrunA17_Chr8g0355821	67.742	155	49	1	1	155	1	154	1.34e-77	227
Msa1326630	MtrunA17_Chr8g0355801	68.153	157	49	1	1	157	1	156	4.93e-77	226
Msa1326630	MtrunA17_Chr8g0355791	67.516	157	50	1	1	157	1	156	2.44e-75	221
Msa1326630	MtrunA17_Chr8g0355771	65.605	157	53	1	1	157	1	156	3.60e-73	216
Msa1326630	MtrunA17_Chr1g0160371	43.791	153	83	2	1	151	1	152	1.44e-38	128
Msa1326630	MtrunA17_Chr1g0160381	39.869	153	89	2	1	151	5	156	7.49e-38	127
Msa1326630	MtrunA17_Chr1g0160391	37.821	156	89	4	1	149	1	155	8.10e-28	101
Msa1326630	MtrunA17_Chr1g0160801	37.838	148	83	5	7	152	7	147	1.44e-24	92.8
Msa1326630	MtrunA17_Chr8g0339261	33.793	145	93	3	6	149	8	150	2.07e-24	92.4
Msa1326630	MtrunA17_Chr1g0160351	45.161	93	49	1	61	151	1	93	5.92e-21	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326630	AT5G28010.1	34.000	150	96	3	3	150	15	163	7.65e-25	94.4
Msa1326630	AT5G28010.2	34.000	150	96	3	3	150	15	163	7.65e-25	94.4
Msa1326630	AT1G70890.1	34.667	150	95	3	3	150	7	155	5.11e-23	89.4
Msa1326630	AT1G70840.1	33.333	150	97	3	3	150	20	168	3.55e-22	87.4
Msa1326630	AT1G70830.5	34.000	150	96	3	3	150	22	170	1.12e-21	86.3
Msa1326630	AT1G70830.3	34.000	150	96	3	3	150	22	170	2.35e-21	86.3
Msa1326630	AT5G28000.1	32.000	150	99	3	3	150	13	161	5.08e-21	84.3
Msa1326630	AT1G70830.2	34.000	150	96	3	3	150	22	170	7.74e-21	85.9
Msa1326630	AT1G70830.1	34.000	150	96	3	3	150	22	170	1.77e-20	86.3
Msa1326630	AT1G70830.1	32.667	150	98	3	3	150	184	332	5.41e-19	82.0
Msa1326630	AT1G23130.1	30.872	149	101	2	3	150	10	157	2.28e-20	82.4
Msa1326630	AT1G70850.2	32.000	150	99	3	3	150	9	157	1.41e-19	82.4
Msa1326630	AT1G70830.4	32.667	150	98	3	3	150	137	285	2.35e-19	82.4
Msa1326630	AT1G70850.3	32.000	150	99	3	3	150	9	157	3.09e-19	82.8
Msa1326630	AT1G70850.3	32.857	140	91	3	13	150	175	313	5.03e-18	79.3
Msa1326630	AT1G70850.1	32.000	150	99	3	3	150	9	157	3.09e-19	82.8
Msa1326630	AT1G70850.1	32.857	140	91	3	13	150	175	313	5.03e-18	79.3
Msa1326630	AT1G70880.1	31.333	150	100	3	3	150	8	156	8.45e-19	78.6
Msa1326630	AT1G23120.1	29.167	144	97	3	7	150	7	145	1.12e-18	77.8
Msa1326630	AT1G70870.1	40.625	96	56	1	56	151	44	138	1.66e-18	77.0
Msa1326630	AT1G23120.2	29.167	144	97	3	7	150	57	195	2.47e-18	78.2
Msa1326630	AT1G14930.1	29.936	157	107	3	1	156	1	155	3.19e-17	74.3
Msa1326630	AT4G23670.1	31.373	153	102	3	1	152	1	151	7.61e-17	73.2
Msa1326630	AT1G35260.1	27.815	151	105	3	2	150	1	149	9.03e-17	73.2
Msa1326630	AT2G01520.1	28.758	153	106	3	1	152	1	151	9.77e-16	70.1
Msa1326630	AT1G14940.1	29.299	157	108	3	1	156	1	155	4.27e-15	68.6
Msa1326630	AT4G23680.1	29.605	152	104	3	1	151	1	150	1.31e-14	67.4
Msa1326630	AT4G14060.1	28.758	153	106	3	1	152	1	151	3.51e-14	66.2
Msa1326630	AT2G01530.1	28.105	153	107	3	1	152	1	151	1.09e-13	65.1
Msa1326630	AT1G30990.1	29.139	151	103	4	1	150	1	148	9.83e-13	62.4
Msa1326630	AT1G14950.1	26.752	157	112	3	1	156	1	155	5.24e-12	60.5
Msa1326630	AT1G35310.1	23.741	139	103	3	13	150	12	148	1.25e-11	59.3
Msa1326630	AT1G24020.1	29.605	152	105	2	1	151	1	151	1.34e-11	59.3
Msa1326630	AT1G24020.2	29.605	152	105	2	1	151	1	151	1.34e-11	59.3

Find 37 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAAAGCAATTTCTATTTAA+AGG	0.149474	8_4:+41173015	Msa1326630:five_prime_UTR
TAAGCACTATAAGGTCTTTA+AGG	0.238273	8_4:+41174800	Msa1326630:CDS
GGTAAGCTCAGTACTAAAAT+TGG	0.249711	8_4:+41173129	Msa1326630:CDS
AATGGCTACATGGAACATTT+TGG	0.264766	8_4:+41174915	Msa1326630:CDS
ATATTGTTGCATATGAATAT+TGG	0.357319	8_4:+41175093	Msa1326630:three_prime_UTR
ATGGTACTGCTGCTGCTAAA+TGG	0.372464	8_4:+41174850	Msa1326630:CDS
AATATTCATATGCAACAATA+TGG	0.374299	8_4:-41175091	None:intergenic
CACCCTTATCAATTACTTCA+AGG	0.382574	8_4:-41174827	None:intergenic
TAGGGTTGATATGATGAAAC+TGG	0.411128	8_4:-41173051	None:intergenic
AAATGTTCCATGTAGCCATT+TGG	0.413070	8_4:-41174912	None:intergenic
GAAAGAGAAGAAAGAAAACT+AGG	0.419011	8_4:-41173070	None:intergenic
CATCCTTGAAGTAATTGATA+AGG	0.441221	8_4:+41174824	Msa1326630:CDS
AACACTTATAAGCTCTTTGG+TGG	0.457999	8_4:+41174768	Msa1326630:CDS
TTCTAAGAAATGGTGCTCTC+TGG	0.461766	8_4:+41173108	Msa1326630:exon
ATCTTCACCTTCATGAAGCT+TGG	0.462385	8_4:-41173238	None:intergenic
AAACACTGGACTTATGTCAT+AGG	0.470664	8_4:+41173282	Msa1326630:CDS
AAAGAGAAGAAAGAAAACTA+GGG	0.476000	8_4:-41173069	None:intergenic
ATCCTTGAAGTAATTGATAA+GGG	0.489024	8_4:+41174825	Msa1326630:CDS
AGCTTCATGAAGGTGAAGAT+TGG	0.494334	8_4:+41173241	Msa1326630:CDS
GAGAATATTGACCCTCCAAA+TGG	0.506517	8_4:+41174897	Msa1326630:CDS
AGATATTGATAAGCACTATA+AGG	0.507737	8_4:+41174791	Msa1326630:CDS
GAGTGACAAATATGTTGTAA+TGG	0.516616	8_4:+41175006	Msa1326630:three_prime_UTR
AGATTGGCATCACACTGATT+CGG	0.519723	8_4:+41173257	Msa1326630:CDS
TGACCCTCCAAATGGCTACA+TGG	0.521176	8_4:+41174905	Msa1326630:CDS
TGTTCCATGTAGCCATTTGG+AGG	0.542543	8_4:-41174909	None:intergenic
GAAGTAATTGATAAGGGTGA+TGG	0.557588	8_4:+41174831	Msa1326630:CDS
TGTTGTAATGGCTTAATGCA+TGG	0.565801	8_4:+41175018	Msa1326630:three_prime_UTR
TAATGGCTTAATGCATGGGT+TGG	0.572088	8_4:+41175023	Msa1326630:three_prime_UTR
CATATGAATATTGGCTGCAG+TGG	0.574632	8_4:+41175102	Msa1326630:three_prime_UTR
CATCATACCAAGCTTCATGA+AGG	0.587067	8_4:+41173231	Msa1326630:CDS
GTTGTAATGGCTTAATGCAT+GGG	0.590637	8_4:+41175019	Msa1326630:three_prime_UTR
GTTGATGCTCATCTTGTCAA+AGG	0.600604	8_4:+41174954	Msa1326630:CDS
ACACTGATTCGGTTAAACAC+TGG	0.614381	8_4:+41173268	Msa1326630:CDS
GTTCCATGTAGCCATTTGGA+GGG	0.622662	8_4:-41174908	None:intergenic
TAGATTGTAGAACTTATCAG+AGG	0.623153	8_4:-41173163	None:intergenic
ATAATTCACAACAGATGGCA+AGG	0.633049	8_4:+41174695	Msa1326630:intron
AGATTGTAGAACTTATCAGA+GGG	0.653447	8_4:-41173162	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATAAAAAATGTTAATTGTT+AGG	-	chr8_4:41173487-41173506	None:intergenic	10.0%
!!!	TAGTTTTTTTTTTTTTTTTG+TGG	-	chr8_4:41174205-41174224	None:intergenic	10.0%
!!!	TGCTTTTAATATTTTTTTTA+TGG	-	chr8_4:41174276-41174295	None:intergenic	10.0%
!!	TGTAAAAATTATGAATTATT+TGG	+	chr8_4:41174442-41174461	Msa1326630:intron	10.0%
!!	GTAAAAATTATGAATTATTT+GGG	+	chr8_4:41174443-41174462	Msa1326630:intron	10.0%
!!	TATGAACAATAAATATTTAT+AGG	-	chr8_4:41174507-41174526	None:intergenic	10.0%
!!!	AATAAAATAGTTTTCTTTTT+AGG	+	chr8_4:41174566-41174585	Msa1326630:intron	10.0%
!!!	ATAAAATAGTTTTCTTTTTA+GGG	+	chr8_4:41174567-41174586	Msa1326630:intron	10.0%
!!!	AGTTTATTTGTTAAAAAAAT+AGG	+	chr8_4:41174602-41174621	Msa1326630:intron	10.0%
!!	TATAAAAAATGTTAATTGTT+AGG	-	chr8_4:41173487-41173506	None:intergenic	10.0%
!!!	TAGTTTTTTTTTTTTTTTTG+TGG	-	chr8_4:41174205-41174224	None:intergenic	10.0%
!!!	TGCTTTTAATATTTTTTTTA+TGG	-	chr8_4:41174276-41174295	None:intergenic	10.0%
!!	TGTAAAAATTATGAATTATT+TGG	+	chr8_4:41174442-41174461	Msa1326630:intron	10.0%
!!	GTAAAAATTATGAATTATTT+GGG	+	chr8_4:41174443-41174462	Msa1326630:intron	10.0%
!!	TATGAACAATAAATATTTAT+AGG	-	chr8_4:41174507-41174526	None:intergenic	10.0%
!!!	AATAAAATAGTTTTCTTTTT+AGG	+	chr8_4:41174566-41174585	Msa1326630:intron	10.0%
!!!	ATAAAATAGTTTTCTTTTTA+GGG	+	chr8_4:41174567-41174586	Msa1326630:intron	10.0%
!!!	AGTTTATTTGTTAAAAAAAT+AGG	+	chr8_4:41174602-41174621	Msa1326630:intron	10.0%
!!	ATGATTACAAACTATTAAAA+TGG	-	chr8_4:41173793-41173812	None:intergenic	15.0%
!!	TCATAAAATATGTCAATAAT+TGG	+	chr8_4:41173990-41174009	Msa1326630:intron	15.0%
!!!	AATTTTATTTATGTTGTACT+GGG	-	chr8_4:41174019-41174038	None:intergenic	15.0%
!!!	TAATTTTATTTATGTTGTAC+TGG	-	chr8_4:41174020-41174039	None:intergenic	15.0%
!!	ATAAATAAAATTAACAACAC+TGG	+	chr8_4:41174027-41174046	Msa1326630:intron	15.0%
!!!	TTATATCGATTATTTATTAC+TGG	-	chr8_4:41174070-41174089	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTTTGTGG+TGG	-	chr8_4:41174202-41174221	None:intergenic	15.0%
!!	AATCATATAAAGAATATATG+TGG	+	chr8_4:41174477-41174496	Msa1326630:intron	15.0%
!!!	TCTTTAGAAAAAATATTCAT+TGG	+	chr8_4:41174531-41174550	Msa1326630:intron	15.0%
!!	ATGATTACAAACTATTAAAA+TGG	-	chr8_4:41173793-41173812	None:intergenic	15.0%
!!	TCATAAAATATGTCAATAAT+TGG	+	chr8_4:41173990-41174009	Msa1326630:intron	15.0%
!!!	AATTTTATTTATGTTGTACT+GGG	-	chr8_4:41174019-41174038	None:intergenic	15.0%
!!!	TAATTTTATTTATGTTGTAC+TGG	-	chr8_4:41174020-41174039	None:intergenic	15.0%
!!	ATAAATAAAATTAACAACAC+TGG	+	chr8_4:41174027-41174046	Msa1326630:intron	15.0%
!!!	TTATATCGATTATTTATTAC+TGG	-	chr8_4:41174070-41174089	None:intergenic	15.0%
!!!	TTTTTTTTTTTTTTTTGTGG+TGG	-	chr8_4:41174202-41174221	None:intergenic	15.0%
!!	AATCATATAAAGAATATATG+TGG	+	chr8_4:41174477-41174496	Msa1326630:intron	15.0%
!!!	TCTTTAGAAAAAATATTCAT+TGG	+	chr8_4:41174531-41174550	Msa1326630:intron	15.0%
!!	GTAAAGCAATTTCTATTTAA+AGG	+	chr8_4:41173015-41173034	Msa1326630:five_prime_UTR	20.0%
!!!	TTTGTTTTACTTCTAAGAAA+TGG	+	chr8_4:41173098-41173117	Msa1326630:exon	20.0%
!!	AATCATATAAGATGATGATT+TGG	-	chr8_4:41173344-41173363	None:intergenic	20.0%
!!	CAATCTTTATAGAATTCATT+TGG	-	chr8_4:41173448-41173467	None:intergenic	20.0%
!!	CAAATGAATTCTATAAAGAT+TGG	+	chr8_4:41173446-41173465	Msa1326630:intron	20.0%
!!!	TTAAAGAGATTTGATTTTGT+AGG	+	chr8_4:41173732-41173751	Msa1326630:intron	20.0%
!!	AATAATCCTCTATAGATATA+AGG	+	chr8_4:41173854-41173873	Msa1326630:intron	20.0%
!!	AATATTCATATGCAACAATA+TGG	-	chr8_4:41175094-41175113	None:intergenic	20.0%
!!	ATATTGTTGCATATGAATAT+TGG	+	chr8_4:41175093-41175112	Msa1326630:three_prime_UTR	20.0%
!!	GTAAAGCAATTTCTATTTAA+AGG	+	chr8_4:41173015-41173034	Msa1326630:five_prime_UTR	20.0%
!!!	TTTGTTTTACTTCTAAGAAA+TGG	+	chr8_4:41173098-41173117	Msa1326630:exon	20.0%
!!	AATCATATAAGATGATGATT+TGG	-	chr8_4:41173344-41173363	None:intergenic	20.0%
!!	CAATCTTTATAGAATTCATT+TGG	-	chr8_4:41173448-41173467	None:intergenic	20.0%
!!	CAAATGAATTCTATAAAGAT+TGG	+	chr8_4:41173446-41173465	Msa1326630:intron	20.0%
!!!	TTAAAGAGATTTGATTTTGT+AGG	+	chr8_4:41173732-41173751	Msa1326630:intron	20.0%
!!	AATAATCCTCTATAGATATA+AGG	+	chr8_4:41173854-41173873	Msa1326630:intron	20.0%
!!	AATATTCATATGCAACAATA+TGG	-	chr8_4:41175094-41175113	None:intergenic	20.0%
!!	ATATTGTTGCATATGAATAT+TGG	+	chr8_4:41175093-41175112	Msa1326630:three_prime_UTR	20.0%
!	AAAGAGAAGAAAGAAAACTA+GGG	-	chr8_4:41173072-41173091	None:intergenic	25.0%
!	CTATACTTCTAACAGAAAAA+AGG	+	chr8_4:41173402-41173421	Msa1326630:intron	25.0%
!	AATATGTTACTGTAGTTGTT+AGG	-	chr8_4:41173515-41173534	None:intergenic	25.0%
!!	CTTTTGATCTAAAAGATACA+AGG	+	chr8_4:41173565-41173584	Msa1326630:intron	25.0%
!	CGACATAATAATATTTGCAA+AGG	+	chr8_4:41173759-41173778	Msa1326630:intron	25.0%
!	AAAATGTCGAAAATAATCCT+AGG	+	chr8_4:41173921-41173940	Msa1326630:intron	25.0%
!	AAAAACACTTATAAGCTCTT+TGG	+	chr8_4:41174765-41174784	Msa1326630:CDS	25.0%
!	AGATATTGATAAGCACTATA+AGG	+	chr8_4:41174791-41174810	Msa1326630:CDS	25.0%
!	ATCCTTGAAGTAATTGATAA+GGG	+	chr8_4:41174825-41174844	Msa1326630:CDS	25.0%
!	AAAGAGAAGAAAGAAAACTA+GGG	-	chr8_4:41173072-41173091	None:intergenic	25.0%
!	CTATACTTCTAACAGAAAAA+AGG	+	chr8_4:41173402-41173421	Msa1326630:intron	25.0%
!	AATATGTTACTGTAGTTGTT+AGG	-	chr8_4:41173515-41173534	None:intergenic	25.0%
!!	CTTTTGATCTAAAAGATACA+AGG	+	chr8_4:41173565-41173584	Msa1326630:intron	25.0%
!	CGACATAATAATATTTGCAA+AGG	+	chr8_4:41173759-41173778	Msa1326630:intron	25.0%
!	AAAATGTCGAAAATAATCCT+AGG	+	chr8_4:41173921-41173940	Msa1326630:intron	25.0%
!	AAAAACACTTATAAGCTCTT+TGG	+	chr8_4:41174765-41174784	Msa1326630:CDS	25.0%
!	AGATATTGATAAGCACTATA+AGG	+	chr8_4:41174791-41174810	Msa1326630:CDS	25.0%
!	ATCCTTGAAGTAATTGATAA+GGG	+	chr8_4:41174825-41174844	Msa1326630:CDS	25.0%
	GAAAGAGAAGAAAGAAAACT+AGG	-	chr8_4:41173073-41173092	None:intergenic	30.0%
	AGATTGTAGAACTTATCAGA+GGG	-	chr8_4:41173165-41173184	None:intergenic	30.0%
	TAGATTGTAGAACTTATCAG+AGG	-	chr8_4:41173166-41173185	None:intergenic	30.0%
	TGATCTAAAAGATACAAGGT+TGG	+	chr8_4:41173569-41173588	Msa1326630:intron	30.0%
!!	TCTCTTTTGACTCTTTTGAA+CGG	+	chr8_4:41173624-41173643	Msa1326630:intron	30.0%
!!	TTTGTTGAATGTTAGTTTGC+GGG	-	chr8_4:41173700-41173719	None:intergenic	30.0%
!	GTTTGTTGAATGTTAGTTTG+CGG	-	chr8_4:41173701-41173720	None:intergenic	30.0%
!!	AGAGATTTGATTTTGTAGGA+AGG	+	chr8_4:41173736-41173755	Msa1326630:intron	30.0%
	AGTCAACCTTATATCTATAG+AGG	-	chr8_4:41173863-41173882	None:intergenic	30.0%
!!	ATAGATATAAGGTTGACTTG+TGG	+	chr8_4:41173865-41173884	Msa1326630:intron	30.0%
	CGAAAATAATCCTAGGTATA+AGG	+	chr8_4:41173928-41173947	Msa1326630:intron	30.0%
	GACAATGCATAATATATGCA+AGG	+	chr8_4:41174158-41174177	Msa1326630:intron	30.0%
!!!	CAGTAACATTTTGCTATTGT+CGG	-	chr8_4:41174233-41174252	None:intergenic	30.0%
	TAAGCACTATAAGGTCTTTA+AGG	+	chr8_4:41174800-41174819	Msa1326630:CDS	30.0%
	CATCCTTGAAGTAATTGATA+AGG	+	chr8_4:41174824-41174843	Msa1326630:CDS	30.0%
	GAGTGACAAATATGTTGTAA+TGG	+	chr8_4:41175006-41175025	Msa1326630:three_prime_UTR	30.0%
	GAAAGAGAAGAAAGAAAACT+AGG	-	chr8_4:41173073-41173092	None:intergenic	30.0%
	AGATTGTAGAACTTATCAGA+GGG	-	chr8_4:41173165-41173184	None:intergenic	30.0%
	TAGATTGTAGAACTTATCAG+AGG	-	chr8_4:41173166-41173185	None:intergenic	30.0%
	TGATCTAAAAGATACAAGGT+TGG	+	chr8_4:41173569-41173588	Msa1326630:intron	30.0%
!!	TCTCTTTTGACTCTTTTGAA+CGG	+	chr8_4:41173624-41173643	Msa1326630:intron	30.0%
!!	TTTGTTGAATGTTAGTTTGC+GGG	-	chr8_4:41173700-41173719	None:intergenic	30.0%
!	GTTTGTTGAATGTTAGTTTG+CGG	-	chr8_4:41173701-41173720	None:intergenic	30.0%
!!	AGAGATTTGATTTTGTAGGA+AGG	+	chr8_4:41173736-41173755	Msa1326630:intron	30.0%
	AGTCAACCTTATATCTATAG+AGG	-	chr8_4:41173863-41173882	None:intergenic	30.0%
!!	ATAGATATAAGGTTGACTTG+TGG	+	chr8_4:41173865-41173884	Msa1326630:intron	30.0%
	CGAAAATAATCCTAGGTATA+AGG	+	chr8_4:41173928-41173947	Msa1326630:intron	30.0%
	GACAATGCATAATATATGCA+AGG	+	chr8_4:41174158-41174177	Msa1326630:intron	30.0%
!!!	CAGTAACATTTTGCTATTGT+CGG	-	chr8_4:41174233-41174252	None:intergenic	30.0%
	TAAGCACTATAAGGTCTTTA+AGG	+	chr8_4:41174800-41174819	Msa1326630:CDS	30.0%
	CATCCTTGAAGTAATTGATA+AGG	+	chr8_4:41174824-41174843	Msa1326630:CDS	30.0%
	GAGTGACAAATATGTTGTAA+TGG	+	chr8_4:41175006-41175025	Msa1326630:three_prime_UTR	30.0%
!!	TAGGGTTGATATGATGAAAC+TGG	-	chr8_4:41173054-41173073	None:intergenic	35.0%
	GGTAAGCTCAGTACTAAAAT+TGG	+	chr8_4:41173129-41173148	Msa1326630:CDS	35.0%
	AAACACTGGACTTATGTCAT+AGG	+	chr8_4:41173282-41173301	Msa1326630:CDS	35.0%
!!	TGATGATTTGGTTATCGATC+AGG	-	chr8_4:41173332-41173351	None:intergenic	35.0%
	AAAAGAGTCAAAAGAGAACG+AGG	-	chr8_4:41173621-41173640	None:intergenic	35.0%
!!	TTTGGCATGAGATTTTCAAG+TGG	-	chr8_4:41173673-41173692	None:intergenic	35.0%
	CTTGAAAATCTCATGCCAAA+TGG	+	chr8_4:41173673-41173692	Msa1326630:intron	35.0%
	ACAAGTCAAACCTTATACCT+AGG	-	chr8_4:41173941-41173960	None:intergenic	35.0%
!!	TAGGTATAAGGTTTGACTTG+TGG	+	chr8_4:41173940-41173959	Msa1326630:intron	35.0%
!!	TATAAGGTTTGACTTGTGGT+TGG	+	chr8_4:41173944-41173963	Msa1326630:intron	35.0%
!	TAAGCTTAACTCAGTTGGTA+TGG	+	chr8_4:41174136-41174155	Msa1326630:intron	35.0%
	CCATCTGTTGTGAATTATGA+CGG	-	chr8_4:41174693-41174712	None:intergenic	35.0%
	ATAATTCACAACAGATGGCA+AGG	+	chr8_4:41174695-41174714	Msa1326630:intron	35.0%
	AACACTTATAAGCTCTTTGG+TGG	+	chr8_4:41174768-41174787	Msa1326630:CDS	35.0%
	CACCCTTATCAATTACTTCA+AGG	-	chr8_4:41174830-41174849	None:intergenic	35.0%
	GAAGTAATTGATAAGGGTGA+TGG	+	chr8_4:41174831-41174850	Msa1326630:CDS	35.0%
	AAATGTTCCATGTAGCCATT+TGG	-	chr8_4:41174915-41174934	None:intergenic	35.0%
!	AATGGCTACATGGAACATTT+TGG	+	chr8_4:41174915-41174934	Msa1326630:CDS	35.0%
	TGTTGTAATGGCTTAATGCA+TGG	+	chr8_4:41175018-41175037	Msa1326630:three_prime_UTR	35.0%
	GTTGTAATGGCTTAATGCAT+GGG	+	chr8_4:41175019-41175038	Msa1326630:three_prime_UTR	35.0%
!!	TAGGGTTGATATGATGAAAC+TGG	-	chr8_4:41173054-41173073	None:intergenic	35.0%
	GGTAAGCTCAGTACTAAAAT+TGG	+	chr8_4:41173129-41173148	Msa1326630:CDS	35.0%
	AAACACTGGACTTATGTCAT+AGG	+	chr8_4:41173282-41173301	Msa1326630:CDS	35.0%
!!	TGATGATTTGGTTATCGATC+AGG	-	chr8_4:41173332-41173351	None:intergenic	35.0%
	AAAAGAGTCAAAAGAGAACG+AGG	-	chr8_4:41173621-41173640	None:intergenic	35.0%
!!	TTTGGCATGAGATTTTCAAG+TGG	-	chr8_4:41173673-41173692	None:intergenic	35.0%
	CTTGAAAATCTCATGCCAAA+TGG	+	chr8_4:41173673-41173692	Msa1326630:intron	35.0%
	ACAAGTCAAACCTTATACCT+AGG	-	chr8_4:41173941-41173960	None:intergenic	35.0%
!!	TAGGTATAAGGTTTGACTTG+TGG	+	chr8_4:41173940-41173959	Msa1326630:intron	35.0%
!!	TATAAGGTTTGACTTGTGGT+TGG	+	chr8_4:41173944-41173963	Msa1326630:intron	35.0%
!	TAAGCTTAACTCAGTTGGTA+TGG	+	chr8_4:41174136-41174155	Msa1326630:intron	35.0%
	CCATCTGTTGTGAATTATGA+CGG	-	chr8_4:41174693-41174712	None:intergenic	35.0%
	ATAATTCACAACAGATGGCA+AGG	+	chr8_4:41174695-41174714	Msa1326630:intron	35.0%
	AACACTTATAAGCTCTTTGG+TGG	+	chr8_4:41174768-41174787	Msa1326630:CDS	35.0%
	CACCCTTATCAATTACTTCA+AGG	-	chr8_4:41174830-41174849	None:intergenic	35.0%
	GAAGTAATTGATAAGGGTGA+TGG	+	chr8_4:41174831-41174850	Msa1326630:CDS	35.0%
	AAATGTTCCATGTAGCCATT+TGG	-	chr8_4:41174915-41174934	None:intergenic	35.0%
!	AATGGCTACATGGAACATTT+TGG	+	chr8_4:41174915-41174934	Msa1326630:CDS	35.0%
	TGTTGTAATGGCTTAATGCA+TGG	+	chr8_4:41175018-41175037	Msa1326630:three_prime_UTR	35.0%
	GTTGTAATGGCTTAATGCAT+GGG	+	chr8_4:41175019-41175038	Msa1326630:three_prime_UTR	35.0%
!	TTCTAAGAAATGGTGCTCTC+TGG	+	chr8_4:41173108-41173127	Msa1326630:exon	40.0%
	CATCATACCAAGCTTCATGA+AGG	+	chr8_4:41173231-41173250	Msa1326630:CDS	40.0%
	ATCTTCACCTTCATGAAGCT+TGG	-	chr8_4:41173241-41173260	None:intergenic	40.0%
	AGCTTCATGAAGGTGAAGAT+TGG	+	chr8_4:41173241-41173260	Msa1326630:CDS	40.0%
!	AGATTGGCATCACACTGATT+CGG	+	chr8_4:41173257-41173276	Msa1326630:CDS	40.0%
!!	ACACTGATTCGGTTAAACAC+TGG	+	chr8_4:41173268-41173287	Msa1326630:CDS	40.0%
	AAAGAGAACGAGGTGATTGA+AGG	-	chr8_4:41173611-41173630	None:intergenic	40.0%
!!!	AGATTTTCAAGTGGAAGGCT+GGG	-	chr8_4:41173664-41173683	None:intergenic	40.0%
!!!	GCATGAGATTTTCAAGTGGA+AGG	-	chr8_4:41173669-41173688	None:intergenic	40.0%
	ACTCGTAAGCTTAACTCAGT+TGG	+	chr8_4:41174131-41174150	Msa1326630:intron	40.0%
	TGTTGTGAATTATGACGGCA+CGG	-	chr8_4:41174688-41174707	None:intergenic	40.0%
	CCGTCATAATTCACAACAGA+TGG	+	chr8_4:41174690-41174709	Msa1326630:intron	40.0%
	GAGAATATTGACCCTCCAAA+TGG	+	chr8_4:41174897-41174916	Msa1326630:CDS	40.0%
!!	GAACATTTTGGCAAAGTCAC+AGG	+	chr8_4:41174927-41174946	Msa1326630:CDS	40.0%
	GTTGATGCTCATCTTGTCAA+AGG	+	chr8_4:41174954-41174973	Msa1326630:CDS	40.0%
	TAATGGCTTAATGCATGGGT+TGG	+	chr8_4:41175023-41175042	Msa1326630:three_prime_UTR	40.0%
!	CATATGAATATTGGCTGCAG+TGG	+	chr8_4:41175102-41175121	Msa1326630:three_prime_UTR	40.0%
!	TTCTAAGAAATGGTGCTCTC+TGG	+	chr8_4:41173108-41173127	Msa1326630:exon	40.0%
	CATCATACCAAGCTTCATGA+AGG	+	chr8_4:41173231-41173250	Msa1326630:CDS	40.0%
	ATCTTCACCTTCATGAAGCT+TGG	-	chr8_4:41173241-41173260	None:intergenic	40.0%
	AGCTTCATGAAGGTGAAGAT+TGG	+	chr8_4:41173241-41173260	Msa1326630:CDS	40.0%
!	AGATTGGCATCACACTGATT+CGG	+	chr8_4:41173257-41173276	Msa1326630:CDS	40.0%
!!	ACACTGATTCGGTTAAACAC+TGG	+	chr8_4:41173268-41173287	Msa1326630:CDS	40.0%
	AAAGAGAACGAGGTGATTGA+AGG	-	chr8_4:41173611-41173630	None:intergenic	40.0%
!!!	AGATTTTCAAGTGGAAGGCT+GGG	-	chr8_4:41173664-41173683	None:intergenic	40.0%
!!!	GCATGAGATTTTCAAGTGGA+AGG	-	chr8_4:41173669-41173688	None:intergenic	40.0%
	ACTCGTAAGCTTAACTCAGT+TGG	+	chr8_4:41174131-41174150	Msa1326630:intron	40.0%
	TGTTGTGAATTATGACGGCA+CGG	-	chr8_4:41174688-41174707	None:intergenic	40.0%
	CCGTCATAATTCACAACAGA+TGG	+	chr8_4:41174690-41174709	Msa1326630:intron	40.0%
	GAGAATATTGACCCTCCAAA+TGG	+	chr8_4:41174897-41174916	Msa1326630:CDS	40.0%
!!	GAACATTTTGGCAAAGTCAC+AGG	+	chr8_4:41174927-41174946	Msa1326630:CDS	40.0%
	GTTGATGCTCATCTTGTCAA+AGG	+	chr8_4:41174954-41174973	Msa1326630:CDS	40.0%
	TAATGGCTTAATGCATGGGT+TGG	+	chr8_4:41175023-41175042	Msa1326630:three_prime_UTR	40.0%
!	CATATGAATATTGGCTGCAG+TGG	+	chr8_4:41175102-41175121	Msa1326630:three_prime_UTR	40.0%
	AGAACGAGGTGATTGAAGGA+GGG	-	chr8_4:41173607-41173626	None:intergenic	45.0%
!!!	GAGATTTTCAAGTGGAAGGC+TGG	-	chr8_4:41173665-41173684	None:intergenic	45.0%
!!	TGTTAGTTTGCGGGACCATT+TGG	-	chr8_4:41173691-41173710	None:intergenic	45.0%
	GTTGTGAATTATGACGGCAC+GGG	-	chr8_4:41174687-41174706	None:intergenic	45.0%
	ATGGTACTGCTGCTGCTAAA+TGG	+	chr8_4:41174850-41174869	Msa1326630:CDS	45.0%
	GTTCCATGTAGCCATTTGGA+GGG	-	chr8_4:41174911-41174930	None:intergenic	45.0%
	TGTTCCATGTAGCCATTTGG+AGG	-	chr8_4:41174912-41174931	None:intergenic	45.0%
	AGAACGAGGTGATTGAAGGA+GGG	-	chr8_4:41173607-41173626	None:intergenic	45.0%
!!!	GAGATTTTCAAGTGGAAGGC+TGG	-	chr8_4:41173665-41173684	None:intergenic	45.0%
!!	TGTTAGTTTGCGGGACCATT+TGG	-	chr8_4:41173691-41173710	None:intergenic	45.0%
	GTTGTGAATTATGACGGCAC+GGG	-	chr8_4:41174687-41174706	None:intergenic	45.0%
	ATGGTACTGCTGCTGCTAAA+TGG	+	chr8_4:41174850-41174869	Msa1326630:CDS	45.0%
	GTTCCATGTAGCCATTTGGA+GGG	-	chr8_4:41174911-41174930	None:intergenic	45.0%
	TGTTCCATGTAGCCATTTGG+AGG	-	chr8_4:41174912-41174931	None:intergenic	45.0%
	GAGAACGAGGTGATTGAAGG+AGG	-	chr8_4:41173608-41173627	None:intergenic	50.0%
	TGACCCTCCAAATGGCTACA+TGG	+	chr8_4:41174905-41174924	Msa1326630:CDS	50.0%
	GAGAACGAGGTGATTGAAGG+AGG	-	chr8_4:41173608-41173627	None:intergenic	50.0%
	TGACCCTCCAAATGGCTACA+TGG	+	chr8_4:41174905-41174924	Msa1326630:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	41173004	41175192	41173004	ID=Msa1326630;Name=Msa1326630
chr8_4	mRNA	41173004	41175192	41173004	ID=Msa1326630-mRNA-1;Parent=Msa1326630;Name=Msa1326630-mRNA-1;_AED=0.27;_eAED=0.27;_QI=113\|1\|1\|1\|1\|1\|2\|197\|157
chr8_4	exon	41173004	41173303	41173004	ID=Msa1326630-mRNA-1:exon:12100;Parent=Msa1326630-mRNA-1
chr8_4	exon	41174709	41175192	41174709	ID=Msa1326630-mRNA-1:exon:12101;Parent=Msa1326630-mRNA-1
chr8_4	five_prime_UTR	41173004	41173116	41173004	ID=Msa1326630-mRNA-1:five_prime_utr;Parent=Msa1326630-mRNA-1
chr8_4	CDS	41173117	41173303	41173117	ID=Msa1326630-mRNA-1:cds;Parent=Msa1326630-mRNA-1
chr8_4	CDS	41174709	41174995	41174709	ID=Msa1326630-mRNA-1:cds;Parent=Msa1326630-mRNA-1
chr8_4	three_prime_UTR	41174996	41175192	41174996	ID=Msa1326630-mRNA-1:three_prime_utr;Parent=Msa1326630-mRNA-1

Gene Sequence

>Msa1326630

ATGGTGCTCTCTGGTAAGCTCAGTACTAAAATTGGAATCAAAACACCCTCTGATAAGTTCTACAATCTATTTGTAACAGAACTTCATGAAGTGCAAAACATTAGTGAAAGAGTTCATCATACCAAGCTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTTATGTCATAGATGGCAAGGTACACACATGTCATGAGAGTGTTGAAGAAGTAGATGAACTGAATAAAAAAAACACTTATAAGCTCTTTGGTGGAGATATTGATAAGCACTATAAGGTCTTTAAGGTCATCCTTGAAGTAATTGATAAGGGTGATGGTACTGCTGCTGCTAAATGGACAGTTGAATATGAGAAGATCAATGAGAATATTGACCCTCCAAATGGCTACATGGAACATTTTGGCAAAGTCACAGGAGATGTTGATGCTCATCTTGTCAAAGGCGCAAATATAGCTCTATAA

Protein sequence

>Msa1326630

MVLSGKLSTKIGIKTPSDKFYNLFVTELHEVQNISERVHHTKLHEGEDWHHTDSVKHWTYVIDGKVHTCHESVEEVDELNKKNTYKLFGGDIDKHYKVFKVILEVIDKGDGTAAAKWTVEYEKINENIDPPNGYMEHFGKVTGDVDAHLVKGANIAL*