AlfalfaGEDB | Msa1375460

M. sativa cultivar zhongmu-4 / Msa1375460

KEGG: K14484
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF02309.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375460	XP_013469145.1	98.864	176	2	0	1	176	1	176	1.57e-127	365

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375460	sp\|Q9M1R4\|IAA30_ARATH	49.686	159	65	5	20	171	19	169	4.17e-38	131

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375460	A0A072VP23	98.864	176	2	0	1	176	1	176	7.48e-128	365

TFs/TRs:

Gene ID	Type	Classification
Msa1375460	TR	AUX/IAA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031820	Msa1375460	0.803255	3.803125e-49	-8.615850e-47
Msa0035040	Msa1375460	0.884324	2.114274e-71	-8.615850e-47
Msa0039250	Msa1375460	0.811288	7.547084e-51	-8.615850e-47
Msa0081420	Msa1375460	0.803104	4.088063e-49	-8.615850e-47
Msa0093850	Msa1375460	0.812583	3.941951e-51	-8.615850e-47
Msa0098470	Msa1375460	0.825422	4.728671e-54	-8.615850e-47
Msa1375460	Msa1383530	0.820918	5.321330e-53	-8.615850e-47
Msa1375460	Msa1386710	0.806577	7.687554e-50	-8.615850e-47
Msa1375460	Msa1423350	0.805861	1.087925e-49	-8.615850e-47
Msa1375460	Msa1425880	0.804050	2.601598e-49	-8.615850e-47
Msa1375460	Msa1440310	0.838583	2.637723e-57	-8.615850e-47
Msa0679100	Msa1375460	0.804020	2.639178e-49	-8.615850e-47
Msa0133720	Msa1375460	0.811935	5.459569e-51	-8.615850e-47
Msa0133820	Msa1375460	0.804299	2.308605e-49	-8.615850e-47
Msa0138360	Msa1375460	0.807159	5.793113e-50	-8.615850e-47
Msa0147980	Msa1375460	0.801898	7.246070e-49	-8.615850e-47
Msa0154440	Msa1375460	0.806318	8.720308e-50	-8.615850e-47
Msa0171850	Msa1375460	0.811990	5.310770e-51	-8.615850e-47
Msa0173710	Msa1375460	0.918120	2.303928e-86	-8.615850e-47
Msa0173890	Msa1375460	0.803579	3.259827e-49	-8.615850e-47
Msa0181230	Msa1375460	0.826004	3.440956e-54	-8.615850e-47
Msa1253550	Msa1375460	0.804913	1.718912e-49	-8.615850e-47
Msa1332760	Msa1375460	0.828750	7.557459e-55	-8.615850e-47
Msa1333890	Msa1375460	0.812974	3.236704e-51	-8.615850e-47
Msa0372810	Msa1375460	0.814406	1.566214e-51	-8.615850e-47
Msa0378720	Msa1375460	0.808542	2.942860e-50	-8.615850e-47
Msa0378970	Msa1375460	0.815580	8.594729e-52	-8.615850e-47
Msa0451070	Msa1375460	0.812489	4.132009e-51	-8.615850e-47
Msa0474730	Msa1375460	0.803124	4.048557e-49	-8.615850e-47
Msa0474940	Msa1375460	0.802172	6.364399e-49	-8.615850e-47
Msa0479200	Msa1375460	0.835000	2.163900e-56	-8.615850e-47
Msa1034500	Msa1375460	0.815266	1.009673e-51	-8.615850e-47
Msa1040840	Msa1375460	0.808248	3.400167e-50	-8.615850e-47
Msa1076560	Msa1375460	0.800539	1.374546e-48	-8.615850e-47
Msa1079230	Msa1375460	0.813536	2.435446e-51	-8.615850e-47
Msa1080640	Msa1375460	0.804019	2.640173e-49	-8.615850e-47
Msa1089450	Msa1375460	0.802993	4.309775e-49	-8.615850e-47
Msa0241830	Msa1375460	0.809271	2.055340e-50	-8.615850e-47
Msa0277450	Msa1375460	0.804549	2.048056e-49	-8.615850e-47
Msa0317970	Msa1375460	0.808894	2.474740e-50	-8.615850e-47
Msa0341690	Msa1375460	0.823925	1.065239e-53	-8.615850e-47
Msa0358890	Msa1375460	0.807802	4.230277e-50	-8.615850e-47
Msa1126450	Msa1375460	0.802563	5.286745e-49	-8.615850e-47
Msa1218450	Msa1375460	0.801183	1.015240e-48	-8.615850e-47
Msa1219000	Msa1375460	0.847323	1.243748e-59	-8.615850e-47
Msa0518030	Msa1375460	0.806819	6.834619e-50	-8.615850e-47
Msa0556010	Msa1375460	0.846809	1.719919e-59	-8.615850e-47
Msa0581690	Msa1375460	0.809576	1.767380e-50	-8.615850e-47
Msa0866520	Msa1375460	0.800453	1.430791e-48	-8.615850e-47
Msa0937020	Msa1375460	0.800110	1.680526e-48	-8.615850e-47
Msa0944660	Msa1375460	0.801692	7.985524e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375460	MtrunA17_Chr1g0193861	98.864	176	2	0	1	176	1	176	1.44e-131	365
Msa1375460	MtrunA17_Chr7g0270851	65.537	177	42	5	1	175	1	160	2.16e-67	202
Msa1375460	MtrunA17_Chr4g0069561	54.135	133	60	1	41	173	52	183	4.10e-39	131
Msa1375460	MtrunA17_Chr1g0183251	50.909	110	36	4	85	176	147	256	2.71e-24	95.9
Msa1375460	MtrunA17_Chr1g0184801	38.650	163	79	6	16	176	58	201	7.32e-23	90.5
Msa1375460	MtrunA17_Chr1g0166011	33.714	175	91	5	9	176	26	182	5.49e-22	87.8
Msa1375460	MtrunA17_Chr1g0187961	44.944	89	48	1	82	170	84	171	9.60e-21	84.3
Msa1375460	MtrunA17_Chr7g0260621	41.880	117	62	4	64	176	87	201	1.10e-20	84.7
Msa1375460	MtrunA17_Chr5g0411501	42.727	110	48	3	82	176	214	323	6.44e-19	82.4
Msa1375460	MtrunA17_Chr5g0428141	42.593	108	46	3	83	176	230	335	9.54e-19	82.0
Msa1375460	MtrunA17_Chr6g0486121	36.232	138	63	4	64	176	105	242	1.68e-18	80.1
Msa1375460	MtrunA17_Chr1g0184791	38.938	113	55	2	78	176	121	233	2.15e-18	79.7
Msa1375460	MtrunA17_Chr2g0330951	36.066	122	52	4	78	176	142	260	3.31e-18	79.3
Msa1375460	MtrunA17_Chr8g0366881	42.342	111	47	4	82	176	227	336	3.40e-18	80.5
Msa1375460	MtrunA17_Chr1g0187921	41.593	113	51	4	78	176	113	224	4.75e-18	78.6
Msa1375460	MtrunA17_Chr8g0390281	38.462	117	56	2	76	176	165	281	1.63e-17	77.8
Msa1375460	MtrunA17_Chr7g0260641	37.273	110	56	2	80	176	129	238	1.92e-17	77.0
Msa1375460	MtrunA17_Chr8g0340731	33.333	108	57	1	78	170	150	257	3.68e-17	76.6
Msa1375460	MtrunA17_Chr2g0331411	38.532	109	52	2	83	176	206	314	4.71e-17	77.0
Msa1375460	MtrunA17_Chr4g0004181	47.475	99	45	4	82	176	73	168	3.49e-16	72.4
Msa1375460	MtrunA17_Chr1g0190711	40.000	105	50	4	85	176	137	241	3.87e-16	73.6
Msa1375460	MtrunA17_Chr1g0209181	41.573	89	50	1	85	173	85	171	5.74e-15	68.9
Msa1375460	MtrunA17_Chr2g0332141	34.783	92	52	1	85	168	8	99	2.03e-14	66.2
Msa1375460	MtrunA17_Chr4g0064131	32.773	119	59	4	64	170	96	205	3.92e-13	64.7
Msa1375460	MtrunA17_Chr7g0239061	35.227	88	50	1	81	168	568	648	2.09e-12	64.3
Msa1375460	MtrunA17_Chr2g0276781	32.039	103	56	2	66	168	538	626	6.14e-12	63.2
Msa1375460	MtrunA17_Chr8g0346711	36.585	82	45	1	87	168	562	636	2.67e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375460	AT3G62100.1	49.686	159	65	5	20	171	19	169	4.23e-39	131
Msa1375460	AT2G46990.1	46.259	147	67	4	36	172	28	172	1.79e-35	122
Msa1375460	AT3G17600.1	44.366	142	60	5	42	174	27	158	6.55e-33	115
Msa1375460	AT3G62100.2	46.897	145	62	5	20	157	19	155	2.17e-30	108
Msa1375460	AT2G46990.2	43.939	132	62	4	36	157	28	157	4.07e-27	100
Msa1375460	AT5G25890.1	46.809	94	42	2	84	176	81	167	2.77e-24	93.6
Msa1375460	AT4G28640.1	46.729	107	46	2	75	170	128	234	5.75e-23	92.0
Msa1375460	AT4G28640.3	46.729	107	46	2	75	170	128	234	5.75e-23	92.0
Msa1375460	AT4G28640.2	46.729	107	46	2	75	170	128	234	3.66e-22	90.9
Msa1375460	AT3G16500.1	37.288	118	56	2	71	170	132	249	6.39e-21	87.0
Msa1375460	AT3G16500.2	37.288	118	56	2	71	170	132	249	7.43e-21	87.0
Msa1375460	AT1G04550.2	50.000	90	38	2	85	168	126	214	1.07e-20	85.9
Msa1375460	AT1G51950.1	42.157	102	44	3	83	171	149	248	1.60e-20	85.9
Msa1375460	AT2G33310.2	44.554	101	47	2	85	176	131	231	1.67e-20	85.5
Msa1375460	AT2G33310.3	44.554	101	47	2	85	176	130	230	1.87e-20	85.5
Msa1375460	AT2G33310.1	44.554	101	47	2	85	176	130	230	1.87e-20	85.5
Msa1375460	AT5G65670.1	42.202	109	48	2	83	176	216	324	1.89e-20	87.0
Msa1375460	AT5G65670.2	42.202	109	48	2	83	176	216	324	2.09e-20	86.7
Msa1375460	AT1G04240.1	44.211	95	51	2	83	176	92	185	6.71e-20	82.8
Msa1375460	AT3G23030.1	41.121	107	56	2	64	170	64	163	7.95e-20	82.0
Msa1375460	AT1G04240.2	44.211	95	51	2	83	176	192	285	2.45e-19	83.2
Msa1375460	AT3G23030.2	41.121	107	56	2	64	170	151	250	3.25e-19	82.4
Msa1375460	AT5G43700.1	46.512	86	45	1	85	170	90	174	6.74e-19	80.1
Msa1375460	AT1G52830.1	38.793	116	65	4	64	176	74	186	2.74e-18	78.6
Msa1375460	AT4G29080.1	39.450	109	51	3	83	176	185	293	5.13e-18	79.7
Msa1375460	AT4G14560.1	44.186	86	47	1	85	170	76	160	5.87e-18	77.0
Msa1375460	AT1G15050.2	36.364	132	66	4	42	170	29	145	3.18e-17	74.7
Msa1375460	AT1G15050.1	36.364	132	66	4	42	170	61	177	4.59e-17	75.1
Msa1375460	AT3G15540.1	43.011	93	50	2	85	176	98	188	5.79e-17	75.1
Msa1375460	AT2G22670.3	39.815	108	50	3	84	176	200	307	1.52e-16	75.9
Msa1375460	AT2G22670.1	39.815	108	50	3	84	176	200	307	1.52e-16	75.9
Msa1375460	AT2G22670.5	39.815	108	50	3	84	176	200	307	1.83e-16	75.9
Msa1375460	AT2G22670.2	39.815	108	50	3	84	176	200	307	1.83e-16	75.9
Msa1375460	AT2G22670.4	39.450	109	51	3	83	176	216	324	2.05e-16	75.9
Msa1375460	AT4G14550.1	34.058	138	65	6	64	176	80	216	3.13e-16	73.9
Msa1375460	AT1G04250.1	40.909	110	49	4	82	176	109	217	4.97e-16	73.2
Msa1375460	AT4G14550.2	34.058	138	65	6	64	176	80	216	5.70e-16	73.2
Msa1375460	AT1G04100.1	37.864	103	50	2	82	170	150	252	2.87e-15	71.6
Msa1375460	AT3G04730.1	37.143	105	53	2	85	176	120	224	3.27e-15	71.2
Msa1375460	AT3G23050.1	37.143	105	53	4	85	176	126	230	8.68e-15	70.1
Msa1375460	AT1G15580.1	39.535	86	48	2	85	170	76	157	3.26e-14	67.0
Msa1375460	AT4G23980.1	32.692	104	63	1	65	168	505	601	5.55e-13	66.6
Msa1375460	AT4G23980.2	32.692	104	63	1	65	168	503	599	5.60e-13	66.6
Msa1375460	AT2G01200.2	35.644	101	63	1	70	170	85	183	7.23e-12	61.6
Msa1375460	AT2G01200.1	35.644	101	63	1	70	170	85	183	7.23e-12	61.6
Msa1375460	AT4G32280.2	36.782	87	47	2	85	170	119	198	3.32e-11	60.1
Msa1375460	AT4G32280.1	36.782	87	47	2	85	170	161	240	6.17e-11	59.7

Find 58 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTGTGGAATTGTAGAATT+TGG	0.173695	tig0019684:-6905	Msa1375460:intergenic
TTCACTTCTCTAATTTAAAA+TGG	0.180789	tig0019684:-8372	Msa1375460:intergenic
TTGCAAAGTCCTTTATGATT+AGG	0.293566	tig0019684:+8348	Msa1375460:three_prime_UTR
TCTTTATTATTTAAACCTTA+AGG	0.333508	tig0019684:+6841	Msa1375460:five_prime_UTR
TCACCGCCTTGTTGCTGAAT+TGG	0.337037	tig0019684:-7208	Msa1375460:intergenic
AAGAATAAGCCGCCACCTTA+AGG	0.358276	tig0019684:-6856	Msa1375460:intergenic
CTCAATTTGCTAGCTCATAA+TGG	0.373904	tig0019684:+7307	Msa1375460:CDS
TCACAAGGGTTGATGCATTC+GGG	0.385803	tig0019684:+8118	Msa1375460:CDS
TACTCTTTAGATTATGTTTG+AGG	0.388933	tig0019684:+8235	Msa1375460:three_prime_UTR
TGCAGAAGGAGACTTGATTA+TGG	0.392903	tig0019684:+7538	Msa1375460:CDS
ATCACAAGGGTTGATGCATT+CGG	0.400585	tig0019684:+8117	Msa1375460:CDS
TACATGGAAGGCATTCCAAT+TGG	0.410476	tig0019684:+7277	Msa1375460:CDS
TAAAATGGACCTAATCATAA+AGG	0.411955	tig0019684:-8357	Msa1375460:intergenic
AAGGAGACTTGATTATGGTT+GGG	0.414355	tig0019684:+7543	Msa1375460:CDS
TATGGTTGGGGATGTCCCTT+GGG	0.419336	tig0019684:+7556	Msa1375460:CDS
AAATTGAGCTTTCTCCCAAT+TGG	0.430798	tig0019684:-7292	Msa1375460:intergenic
TTATGGTTGGGGATGTCCCT+TGG	0.433671	tig0019684:+7555	Msa1375460:CDS
TACAATTCCACAATGGGAAA+AGG	0.446881	tig0019684:+6913	Msa1375460:exon
AGAGAACAAAATCAAAATGA+AGG	0.451318	tig0019684:+8282	Msa1375460:three_prime_UTR
AAATTTAAATATTCAAATGA+AGG	0.453913	tig0019684:-8325	Msa1375460:intergenic
CCTTCTTCTACTGTTGGAAG+AGG	0.459161	tig0019684:-6953	Msa1375460:intergenic
GAAGGAGACTTGATTATGGT+TGG	0.467457	tig0019684:+7542	Msa1375460:CDS
GGAGTGGTAATTACATAGAA+TGG	0.469288	tig0019684:-7374	Msa1375460:intergenic
ACATGGAAGGCATTCCAATT+GGG	0.472520	tig0019684:+7278	Msa1375460:CDS
GGAAGAGGAGGAAGAAGAAG+TGG	0.473631	tig0019684:-6938	Msa1375460:intergenic
AAATTCTACAATTCCACAAT+GGG	0.475764	tig0019684:+6907	Msa1375460:exon
GATAGAGGATGAAACATTAG+AGG	0.481392	tig0019684:-6986	Msa1375460:intergenic
AGGAGACTTGATTATGGTTG+GGG	0.490396	tig0019684:+7544	Msa1375460:CDS
CTTCTTTGTGAAGGTTTACA+TGG	0.492048	tig0019684:+7261	Msa1375460:CDS
CTCAATCCAAGGTTAAGATC+AGG	0.506435	tig0019684:-7042	Msa1375460:intergenic
CATGTAAACCTTCACAAAGA+AGG	0.519682	tig0019684:-7260	Msa1375460:intergenic
TTTGTGAAGGTTTACATGGA+AGG	0.523480	tig0019684:+7265	Msa1375460:CDS
ATGTTTCCTTCTTCTACTGT+TGG	0.532208	tig0019684:-6959	Msa1375460:intergenic
TTTGTCATATTAGGGGACAT+TGG	0.532866	tig0019684:+7182	Msa1375460:intron
TTATTTAAACCTTAAGGTGG+CGG	0.534814	tig0019684:+6847	Msa1375460:five_prime_UTR
CCTCTTCCAACAGTAGAAGA+AGG	0.535777	tig0019684:+6953	Msa1375460:CDS
TATGTTTGAGGACTAGCAAA+GGG	0.538199	tig0019684:+8247	Msa1375460:three_prime_UTR
GTTAAGTAAACTTACTCCCA+AGG	0.550745	tig0019684:-7572	Msa1375460:intergenic
TCTTCTACTGTTGGAAGAGG+AGG	0.561746	tig0019684:-6950	Msa1375460:intergenic
CAACAGTGCCTTCTTTGTGA+AGG	0.564852	tig0019684:+7252	Msa1375460:CDS
TAAATTTACATACCTTGAGG+TGG	0.569907	tig0019684:-7097	Msa1375460:intergenic
TAATAAAGAAAGAATTGAAG+AGG	0.571632	tig0019684:-6827	Msa1375460:intergenic
TCATAATGGCTATCATGAGT+TGG	0.572244	tig0019684:+7321	Msa1375460:CDS
ATCAACATATTGTTGAGTGG+TGG	0.579143	tig0019684:-7070	Msa1375460:intergenic
CAAATTCTACAATTCCACAA+TGG	0.580800	tig0019684:+6906	Msa1375460:exon
TTATTATTTAAACCTTAAGG+TGG	0.581557	tig0019684:+6844	Msa1375460:five_prime_UTR
ATGTTGATTATTCCACCTCA+AGG	0.585626	tig0019684:+7085	Msa1375460:CDS
TGTTCTTATCATCTGTGAAG+AGG	0.588185	tig0019684:+8088	Msa1375460:CDS
GAGAACAAAATCAAAATGAA+GGG	0.593834	tig0019684:+8283	Msa1375460:three_prime_UTR
TTATGTTTGAGGACTAGCAA+AGG	0.602533	tig0019684:+8246	Msa1375460:three_prime_UTR
TTAAGTAAACTTACTCCCAA+GGG	0.604202	tig0019684:-7571	Msa1375460:intergenic
TGAAGAGGTTGAAGATCACA+AGG	0.619538	tig0019684:+8103	Msa1375460:CDS
TGGTGGAAATGCTCAATCCA+AGG	0.621212	tig0019684:-7053	Msa1375460:intergenic
TTAACTTATGAAGATGCAGA+AGG	0.627924	tig0019684:+7524	Msa1375460:CDS
TGGCAACCAATTCAGCAACA+AGG	0.686483	tig0019684:+7202	Msa1375460:CDS
ATAATCAACATATTGTTGAG+TGG	0.703279	tig0019684:-7073	Msa1375460:intergenic
CAACCAATTCAGCAACAAGG+CGG	0.746050	tig0019684:+7205	Msa1375460:CDS
GAAGAGGTTGAAGATCACAA+GGG	0.757105	tig0019684:+8104	Msa1375460:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATCAATTAATTTACAAAAT+TGG	-	tig0019684:8040-8059	Msa1375460:intergenic	10.0%
!!!	ATTTTGTAAATTAATTGATT+TGG	+	tig0019684:8040-8059	Msa1375460:intron	10.0%
!!	AAATTTAAATATTCAAATGA+AGG	-	tig0019684:8328-8347	Msa1375460:intergenic	10.0%
!!	AATCAATTAATTTACAAAAT+TGG	-	tig0019684:8040-8059	Msa1375460:intergenic	10.0%
!!!	ATTTTGTAAATTAATTGATT+TGG	+	tig0019684:8040-8059	Msa1375460:intron	10.0%
!!	AAATTTAAATATTCAAATGA+AGG	-	tig0019684:8328-8347	Msa1375460:intergenic	10.0%
!!	TCTTTATTATTTAAACCTTA+AGG	+	tig0019684:6841-6860	Msa1375460:five_prime_UTR	15.0%
!!!	ATTTTTACTTCTTTTTTTGT+TGG	+	tig0019684:7410-7429	Msa1375460:intron	15.0%
!!	TCTTTATTATTTAAACCTTA+AGG	+	tig0019684:6841-6860	Msa1375460:five_prime_UTR	15.0%
!!!	ATTTTTACTTCTTTTTTTGT+TGG	+	tig0019684:7410-7429	Msa1375460:intron	15.0%
!!	TAATAAAGAAAGAATTGAAG+AGG	-	tig0019684:6830-6849	Msa1375460:intergenic	20.0%
!!	TTATTATTTAAACCTTAAGG+TGG	+	tig0019684:6844-6863	Msa1375460:five_prime_UTR	20.0%
!!!	TTTTAAATTTACATACCTTG+AGG	-	tig0019684:7103-7122	Msa1375460:intergenic	20.0%
!!!	ATTGTGTTATTTGTCATATT+AGG	+	tig0019684:7173-7192	Msa1375460:intron	20.0%
!!!	TTGTGTTATTTGTCATATTA+GGG	+	tig0019684:7174-7193	Msa1375460:intron	20.0%
!!	AAGTAAAAATGCATATATGA+GGG	-	tig0019684:7400-7419	Msa1375460:intergenic	20.0%
!!	AATTCACTTAGAATTGAAAT+GGG	-	tig0019684:7619-7638	Msa1375460:intergenic	20.0%
!!	AAATTCACTTAGAATTGAAA+TGG	-	tig0019684:7620-7639	Msa1375460:intergenic	20.0%
!!	ATTTCAATTCTAAGTGAATT+TGG	+	tig0019684:7619-7638	Msa1375460:intron	20.0%
!!!	TGATTTGGTACAATTTTTTT+TGG	+	tig0019684:8055-8074	Msa1375460:intron	20.0%
!!	TTCACTTCTCTAATTTAAAA+TGG	-	tig0019684:8375-8394	Msa1375460:intergenic	20.0%
!!	TAATAAAGAAAGAATTGAAG+AGG	-	tig0019684:6830-6849	Msa1375460:intergenic	20.0%
!!	TTATTATTTAAACCTTAAGG+TGG	+	tig0019684:6844-6863	Msa1375460:five_prime_UTR	20.0%
!!!	TTTTAAATTTACATACCTTG+AGG	-	tig0019684:7103-7122	Msa1375460:intergenic	20.0%
!!!	ATTGTGTTATTTGTCATATT+AGG	+	tig0019684:7173-7192	Msa1375460:intron	20.0%
!!!	TTGTGTTATTTGTCATATTA+GGG	+	tig0019684:7174-7193	Msa1375460:intron	20.0%
!!	AAGTAAAAATGCATATATGA+GGG	-	tig0019684:7400-7419	Msa1375460:intergenic	20.0%
!!	AATTCACTTAGAATTGAAAT+GGG	-	tig0019684:7619-7638	Msa1375460:intergenic	20.0%
!!	AAATTCACTTAGAATTGAAA+TGG	-	tig0019684:7620-7639	Msa1375460:intergenic	20.0%
!!	ATTTCAATTCTAAGTGAATT+TGG	+	tig0019684:7619-7638	Msa1375460:intron	20.0%
!!!	TGATTTGGTACAATTTTTTT+TGG	+	tig0019684:8055-8074	Msa1375460:intron	20.0%
!!	TTCACTTCTCTAATTTAAAA+TGG	-	tig0019684:8375-8394	Msa1375460:intergenic	20.0%
!	AAATTCTACAATTCCACAAT+GGG	+	tig0019684:6907-6926	Msa1375460:exon	25.0%
!	ATAATCAACATATTGTTGAG+TGG	-	tig0019684:7076-7095	Msa1375460:intergenic	25.0%
!!!	TGTGTTATTTGTCATATTAG+GGG	+	tig0019684:7175-7194	Msa1375460:intron	25.0%
!	AGTAAAAATGCATATATGAG+GGG	-	tig0019684:7399-7418	Msa1375460:intergenic	25.0%
!	GAAGTAAAAATGCATATATG+AGG	-	tig0019684:7401-7420	Msa1375460:intergenic	25.0%
!!	TGTTGGTAAAATGAGTAATA+TGG	+	tig0019684:7427-7446	Msa1375460:intron	25.0%
!!	AAGTGAATTTGGCATAATTT+TGG	+	tig0019684:7630-7649	Msa1375460:intron	25.0%
!!!	ATTTTGACACAAGTTACATT+CGG	+	tig0019684:7908-7927	Msa1375460:intron	25.0%
!!	TTTATGGTAACTGTGATTTT+CGG	-	tig0019684:7962-7981	Msa1375460:intergenic	25.0%
!	TACTCTTTAGATTATGTTTG+AGG	+	tig0019684:8235-8254	Msa1375460:three_prime_UTR	25.0%
!	AGAGAACAAAATCAAAATGA+AGG	+	tig0019684:8282-8301	Msa1375460:three_prime_UTR	25.0%
!	GAGAACAAAATCAAAATGAA+GGG	+	tig0019684:8283-8302	Msa1375460:three_prime_UTR	25.0%
!	TAAAATGGACCTAATCATAA+AGG	-	tig0019684:8360-8379	Msa1375460:intergenic	25.0%
!	AAATTCTACAATTCCACAAT+GGG	+	tig0019684:6907-6926	Msa1375460:exon	25.0%
!	ATAATCAACATATTGTTGAG+TGG	-	tig0019684:7076-7095	Msa1375460:intergenic	25.0%
!!!	TGTGTTATTTGTCATATTAG+GGG	+	tig0019684:7175-7194	Msa1375460:intron	25.0%
!	AGTAAAAATGCATATATGAG+GGG	-	tig0019684:7399-7418	Msa1375460:intergenic	25.0%
!	GAAGTAAAAATGCATATATG+AGG	-	tig0019684:7401-7420	Msa1375460:intergenic	25.0%
!!	TGTTGGTAAAATGAGTAATA+TGG	+	tig0019684:7427-7446	Msa1375460:intron	25.0%
!!	AAGTGAATTTGGCATAATTT+TGG	+	tig0019684:7630-7649	Msa1375460:intron	25.0%
!!!	ATTTTGACACAAGTTACATT+CGG	+	tig0019684:7908-7927	Msa1375460:intron	25.0%
!!	TTTATGGTAACTGTGATTTT+CGG	-	tig0019684:7962-7981	Msa1375460:intergenic	25.0%
!	TACTCTTTAGATTATGTTTG+AGG	+	tig0019684:8235-8254	Msa1375460:three_prime_UTR	25.0%
!	AGAGAACAAAATCAAAATGA+AGG	+	tig0019684:8282-8301	Msa1375460:three_prime_UTR	25.0%
!	GAGAACAAAATCAAAATGAA+GGG	+	tig0019684:8283-8302	Msa1375460:three_prime_UTR	25.0%
!	TAAAATGGACCTAATCATAA+AGG	-	tig0019684:8360-8379	Msa1375460:intergenic	25.0%
	TTATTTAAACCTTAAGGTGG+CGG	+	tig0019684:6847-6866	Msa1375460:five_prime_UTR	30.0%
	CATTGTGGAATTGTAGAATT+TGG	-	tig0019684:6908-6927	Msa1375460:intergenic	30.0%
	CAAATTCTACAATTCCACAA+TGG	+	tig0019684:6906-6925	Msa1375460:exon	30.0%
	TAAATTTACATACCTTGAGG+TGG	-	tig0019684:7100-7119	Msa1375460:intergenic	30.0%
	GACACAAACATAGTAGTTTA+AGG	-	tig0019684:7138-7157	Msa1375460:intergenic	30.0%
	GTAAAAATGCATATATGAGG+GGG	-	tig0019684:7398-7417	Msa1375460:intergenic	30.0%
	TTAACTTATGAAGATGCAGA+AGG	+	tig0019684:7524-7543	Msa1375460:CDS	30.0%
	TTAAGTAAACTTACTCCCAA+GGG	-	tig0019684:7574-7593	Msa1375460:intergenic	30.0%
!!	GGCATAATTTTGGTATGTTT+CGG	+	tig0019684:7640-7659	Msa1375460:intron	30.0%
	TTGTGTCAAAATCACACTAA+GGG	-	tig0019684:7900-7919	Msa1375460:intergenic	30.0%
	CGATGAGTTTGGTAAATTTA+TGG	-	tig0019684:7978-7997	Msa1375460:intergenic	30.0%
!!!	ACAATTTTTTTTGGCCATGT+AGG	+	tig0019684:8064-8083	Msa1375460:intron	30.0%
	TTGCAAAGTCCTTTATGATT+AGG	+	tig0019684:8348-8367	Msa1375460:three_prime_UTR	30.0%
!!!	TGAACAAAGAAGTGTTTTGA+AGG	+	tig0019684:8391-8410	Msa1375460:three_prime_UTR	30.0%
!!!	GAACAAAGAAGTGTTTTGAA+GGG	+	tig0019684:8392-8411	Msa1375460:three_prime_UTR	30.0%
	TTATTTAAACCTTAAGGTGG+CGG	+	tig0019684:6847-6866	Msa1375460:five_prime_UTR	30.0%
	CATTGTGGAATTGTAGAATT+TGG	-	tig0019684:6908-6927	Msa1375460:intergenic	30.0%
	CAAATTCTACAATTCCACAA+TGG	+	tig0019684:6906-6925	Msa1375460:exon	30.0%
	TAAATTTACATACCTTGAGG+TGG	-	tig0019684:7100-7119	Msa1375460:intergenic	30.0%
	GACACAAACATAGTAGTTTA+AGG	-	tig0019684:7138-7157	Msa1375460:intergenic	30.0%
	GTAAAAATGCATATATGAGG+GGG	-	tig0019684:7398-7417	Msa1375460:intergenic	30.0%
	TTAACTTATGAAGATGCAGA+AGG	+	tig0019684:7524-7543	Msa1375460:CDS	30.0%
	TTAAGTAAACTTACTCCCAA+GGG	-	tig0019684:7574-7593	Msa1375460:intergenic	30.0%
!!	GGCATAATTTTGGTATGTTT+CGG	+	tig0019684:7640-7659	Msa1375460:intron	30.0%
	TTGTGTCAAAATCACACTAA+GGG	-	tig0019684:7900-7919	Msa1375460:intergenic	30.0%
	CGATGAGTTTGGTAAATTTA+TGG	-	tig0019684:7978-7997	Msa1375460:intergenic	30.0%
!!!	ACAATTTTTTTTGGCCATGT+AGG	+	tig0019684:8064-8083	Msa1375460:intron	30.0%
	TTGCAAAGTCCTTTATGATT+AGG	+	tig0019684:8348-8367	Msa1375460:three_prime_UTR	30.0%
!!!	TGAACAAAGAAGTGTTTTGA+AGG	+	tig0019684:8391-8410	Msa1375460:three_prime_UTR	30.0%
!!!	GAACAAAGAAGTGTTTTGAA+GGG	+	tig0019684:8392-8411	Msa1375460:three_prime_UTR	30.0%
!	AGCAAGAAAAAAGAGTATGC+TGG	+	tig0019684:6778-6797	Msa1375460:five_prime_UTR	35.0%
!	GCAAGAAAAAAGAGTATGCT+GGG	+	tig0019684:6779-6798	Msa1375460:five_prime_UTR	35.0%
	TACAATTCCACAATGGGAAA+AGG	+	tig0019684:6913-6932	Msa1375460:exon	35.0%
	ATGTTTCCTTCTTCTACTGT+TGG	-	tig0019684:6962-6981	Msa1375460:intergenic	35.0%
	GATAGAGGATGAAACATTAG+AGG	-	tig0019684:6989-7008	Msa1375460:intergenic	35.0%
!!	AGGATTTTGATGTGTGATAG+AGG	-	tig0019684:7004-7023	Msa1375460:intergenic	35.0%
	GGAAAAAGATGTTGTTGATC+AGG	-	tig0019684:7024-7043	Msa1375460:intergenic	35.0%
!	CTTTTTCCTGATCTTAACCT+TGG	+	tig0019684:7036-7055	Msa1375460:CDS	35.0%
	ATCAACATATTGTTGAGTGG+TGG	-	tig0019684:7073-7092	Msa1375460:intergenic	35.0%
!	ATGTTGATTATTCCACCTCA+AGG	+	tig0019684:7085-7104	Msa1375460:CDS	35.0%
	TTTGTCATATTAGGGGACAT+TGG	+	tig0019684:7182-7201	Msa1375460:intron	35.0%
	CATGTAAACCTTCACAAAGA+AGG	-	tig0019684:7263-7282	Msa1375460:intergenic	35.0%
	CTTCTTTGTGAAGGTTTACA+TGG	+	tig0019684:7261-7280	Msa1375460:CDS	35.0%
	TTTGTGAAGGTTTACATGGA+AGG	+	tig0019684:7265-7284	Msa1375460:CDS	35.0%
	AAATTGAGCTTTCTCCCAAT+TGG	-	tig0019684:7295-7314	Msa1375460:intergenic	35.0%
!!	CTCAATTTGCTAGCTCATAA+TGG	+	tig0019684:7307-7326	Msa1375460:CDS	35.0%
	TCATAATGGCTATCATGAGT+TGG	+	tig0019684:7321-7340	Msa1375460:CDS	35.0%
	GGAGTGGTAATTACATAGAA+TGG	-	tig0019684:7377-7396	Msa1375460:intergenic	35.0%
!!!	TGTGACTTTGTTATTTTGCC+AGG	+	tig0019684:7458-7477	Msa1375460:intron	35.0%
!!!	GTGACTTTGTTATTTTGCCA+GGG	+	tig0019684:7459-7478	Msa1375460:intron	35.0%
!!!	TGACTTTGTTATTTTGCCAG+GGG	+	tig0019684:7460-7479	Msa1375460:intron	35.0%
	AAGGAGACTTGATTATGGTT+GGG	+	tig0019684:7543-7562	Msa1375460:CDS	35.0%
	GTTAAGTAAACTTACTCCCA+AGG	-	tig0019684:7575-7594	Msa1375460:intergenic	35.0%
	CTTGTGTCAAAATCACACTA+AGG	-	tig0019684:7901-7920	Msa1375460:intergenic	35.0%
	GTTTGAATTGACGATGAGTT+TGG	-	tig0019684:7989-8008	Msa1375460:intergenic	35.0%
	GATGATAAGAACATCCTACA+TGG	-	tig0019684:8081-8100	Msa1375460:intergenic	35.0%
	TGTTCTTATCATCTGTGAAG+AGG	+	tig0019684:8088-8107	Msa1375460:CDS	35.0%
!	TTATGTTTGAGGACTAGCAA+AGG	+	tig0019684:8246-8265	Msa1375460:three_prime_UTR	35.0%
!	TATGTTTGAGGACTAGCAAA+GGG	+	tig0019684:8247-8266	Msa1375460:three_prime_UTR	35.0%
!	AGCAAGAAAAAAGAGTATGC+TGG	+	tig0019684:6778-6797	Msa1375460:five_prime_UTR	35.0%
!	GCAAGAAAAAAGAGTATGCT+GGG	+	tig0019684:6779-6798	Msa1375460:five_prime_UTR	35.0%
	TACAATTCCACAATGGGAAA+AGG	+	tig0019684:6913-6932	Msa1375460:exon	35.0%
	ATGTTTCCTTCTTCTACTGT+TGG	-	tig0019684:6962-6981	Msa1375460:intergenic	35.0%
	GATAGAGGATGAAACATTAG+AGG	-	tig0019684:6989-7008	Msa1375460:intergenic	35.0%
!!	AGGATTTTGATGTGTGATAG+AGG	-	tig0019684:7004-7023	Msa1375460:intergenic	35.0%
	GGAAAAAGATGTTGTTGATC+AGG	-	tig0019684:7024-7043	Msa1375460:intergenic	35.0%
!	CTTTTTCCTGATCTTAACCT+TGG	+	tig0019684:7036-7055	Msa1375460:CDS	35.0%
	ATCAACATATTGTTGAGTGG+TGG	-	tig0019684:7073-7092	Msa1375460:intergenic	35.0%
!	ATGTTGATTATTCCACCTCA+AGG	+	tig0019684:7085-7104	Msa1375460:CDS	35.0%
	TTTGTCATATTAGGGGACAT+TGG	+	tig0019684:7182-7201	Msa1375460:intron	35.0%
	CATGTAAACCTTCACAAAGA+AGG	-	tig0019684:7263-7282	Msa1375460:intergenic	35.0%
	CTTCTTTGTGAAGGTTTACA+TGG	+	tig0019684:7261-7280	Msa1375460:CDS	35.0%
	TTTGTGAAGGTTTACATGGA+AGG	+	tig0019684:7265-7284	Msa1375460:CDS	35.0%
	AAATTGAGCTTTCTCCCAAT+TGG	-	tig0019684:7295-7314	Msa1375460:intergenic	35.0%
!!	CTCAATTTGCTAGCTCATAA+TGG	+	tig0019684:7307-7326	Msa1375460:CDS	35.0%
	TCATAATGGCTATCATGAGT+TGG	+	tig0019684:7321-7340	Msa1375460:CDS	35.0%
	GGAGTGGTAATTACATAGAA+TGG	-	tig0019684:7377-7396	Msa1375460:intergenic	35.0%
!!!	TGTGACTTTGTTATTTTGCC+AGG	+	tig0019684:7458-7477	Msa1375460:intron	35.0%
!!!	GTGACTTTGTTATTTTGCCA+GGG	+	tig0019684:7459-7478	Msa1375460:intron	35.0%
!!!	TGACTTTGTTATTTTGCCAG+GGG	+	tig0019684:7460-7479	Msa1375460:intron	35.0%
	AAGGAGACTTGATTATGGTT+GGG	+	tig0019684:7543-7562	Msa1375460:CDS	35.0%
	GTTAAGTAAACTTACTCCCA+AGG	-	tig0019684:7575-7594	Msa1375460:intergenic	35.0%
	CTTGTGTCAAAATCACACTA+AGG	-	tig0019684:7901-7920	Msa1375460:intergenic	35.0%
	GTTTGAATTGACGATGAGTT+TGG	-	tig0019684:7989-8008	Msa1375460:intergenic	35.0%
	GATGATAAGAACATCCTACA+TGG	-	tig0019684:8081-8100	Msa1375460:intergenic	35.0%
	TGTTCTTATCATCTGTGAAG+AGG	+	tig0019684:8088-8107	Msa1375460:CDS	35.0%
!	TTATGTTTGAGGACTAGCAA+AGG	+	tig0019684:8246-8265	Msa1375460:three_prime_UTR	35.0%
!	TATGTTTGAGGACTAGCAAA+GGG	+	tig0019684:8247-8266	Msa1375460:three_prime_UTR	35.0%
!	AGAAAAAAGAGTATGCTGGG+TGG	+	tig0019684:6782-6801	Msa1375460:five_prime_UTR	40.0%
	CTCAATCCAAGGTTAAGATC+AGG	-	tig0019684:7045-7064	Msa1375460:intergenic	40.0%
!!	TACATGGAAGGCATTCCAAT+TGG	+	tig0019684:7277-7296	Msa1375460:CDS	40.0%
!!	ACATGGAAGGCATTCCAATT+GGG	+	tig0019684:7278-7297	Msa1375460:CDS	40.0%
!!!	GACTTTGTTATTTTGCCAGG+GGG	+	tig0019684:7461-7480	Msa1375460:intron	40.0%
!!!	ACTTTGTTATTTTGCCAGGG+GGG	+	tig0019684:7462-7481	Msa1375460:intron	40.0%
	TGCAGAAGGAGACTTGATTA+TGG	+	tig0019684:7538-7557	Msa1375460:CDS	40.0%
	GAAGGAGACTTGATTATGGT+TGG	+	tig0019684:7542-7561	Msa1375460:CDS	40.0%
	AGGAGACTTGATTATGGTTG+GGG	+	tig0019684:7544-7563	Msa1375460:CDS	40.0%
!	TTGGTATGTTTCGGTGTGTT+TGG	+	tig0019684:7649-7668	Msa1375460:intron	40.0%
!	TGGTATGTTTCGGTGTGTTT+GGG	+	tig0019684:7650-7669	Msa1375460:intron	40.0%
!	ATCACACTAAGGGTGTGTTT+GGG	-	tig0019684:7890-7909	Msa1375460:intergenic	40.0%
!	AATCACACTAAGGGTGTGTT+TGG	-	tig0019684:7891-7910	Msa1375460:intergenic	40.0%
!	GGTAACTGTGATTTTCGGTT+TGG	-	tig0019684:7957-7976	Msa1375460:intergenic	40.0%
	TGAAGAGGTTGAAGATCACA+AGG	+	tig0019684:8103-8122	Msa1375460:CDS	40.0%
	GAAGAGGTTGAAGATCACAA+GGG	+	tig0019684:8104-8123	Msa1375460:CDS	40.0%
!!	ATCACAAGGGTTGATGCATT+CGG	+	tig0019684:8117-8136	Msa1375460:CDS	40.0%
!	AGAAAAAAGAGTATGCTGGG+TGG	+	tig0019684:6782-6801	Msa1375460:five_prime_UTR	40.0%
	CTCAATCCAAGGTTAAGATC+AGG	-	tig0019684:7045-7064	Msa1375460:intergenic	40.0%
!!	TACATGGAAGGCATTCCAAT+TGG	+	tig0019684:7277-7296	Msa1375460:CDS	40.0%
!!	ACATGGAAGGCATTCCAATT+GGG	+	tig0019684:7278-7297	Msa1375460:CDS	40.0%
!!!	GACTTTGTTATTTTGCCAGG+GGG	+	tig0019684:7461-7480	Msa1375460:intron	40.0%
!!!	ACTTTGTTATTTTGCCAGGG+GGG	+	tig0019684:7462-7481	Msa1375460:intron	40.0%
	TGCAGAAGGAGACTTGATTA+TGG	+	tig0019684:7538-7557	Msa1375460:CDS	40.0%
	GAAGGAGACTTGATTATGGT+TGG	+	tig0019684:7542-7561	Msa1375460:CDS	40.0%
	AGGAGACTTGATTATGGTTG+GGG	+	tig0019684:7544-7563	Msa1375460:CDS	40.0%
!	TTGGTATGTTTCGGTGTGTT+TGG	+	tig0019684:7649-7668	Msa1375460:intron	40.0%
!	TGGTATGTTTCGGTGTGTTT+GGG	+	tig0019684:7650-7669	Msa1375460:intron	40.0%
!	ATCACACTAAGGGTGTGTTT+GGG	-	tig0019684:7890-7909	Msa1375460:intergenic	40.0%
!	AATCACACTAAGGGTGTGTT+TGG	-	tig0019684:7891-7910	Msa1375460:intergenic	40.0%
!	GGTAACTGTGATTTTCGGTT+TGG	-	tig0019684:7957-7976	Msa1375460:intergenic	40.0%
	TGAAGAGGTTGAAGATCACA+AGG	+	tig0019684:8103-8122	Msa1375460:CDS	40.0%
	GAAGAGGTTGAAGATCACAA+GGG	+	tig0019684:8104-8123	Msa1375460:CDS	40.0%
!!	ATCACAAGGGTTGATGCATT+CGG	+	tig0019684:8117-8136	Msa1375460:CDS	40.0%
	AAGAATAAGCCGCCACCTTA+AGG	-	tig0019684:6859-6878	Msa1375460:intergenic	45.0%
!	AGTGGAACCTTTTCCCATTG+TGG	-	tig0019684:6923-6942	Msa1375460:intergenic	45.0%
	TCTTCTACTGTTGGAAGAGG+AGG	-	tig0019684:6953-6972	Msa1375460:intergenic	45.0%
	CCTTCTTCTACTGTTGGAAG+AGG	-	tig0019684:6956-6975	Msa1375460:intergenic	45.0%
	CCTCTTCCAACAGTAGAAGA+AGG	+	tig0019684:6953-6972	Msa1375460:CDS	45.0%
	TGGTGGAAATGCTCAATCCA+AGG	-	tig0019684:7056-7075	Msa1375460:intergenic	45.0%
	TGGCAACCAATTCAGCAACA+AGG	+	tig0019684:7202-7221	Msa1375460:CDS	45.0%
	CAACCAATTCAGCAACAAGG+CGG	+	tig0019684:7205-7224	Msa1375460:CDS	45.0%
	CAACAGTGCCTTCTTTGTGA+AGG	+	tig0019684:7252-7271	Msa1375460:CDS	45.0%
	AATGCATATATGAGGGGGAG+TGG	-	tig0019684:7393-7412	Msa1375460:intergenic	45.0%
!	TTTCGGTGTGTTTGGGAAGA+GGG	+	tig0019684:7657-7676	Msa1375460:intron	45.0%
	TGTGTTTGGGAAGAGGGTTT+AGG	+	tig0019684:7663-7682	Msa1375460:intron	45.0%
	TTTGGGAAGAGGGTTTAGGA+GGG	+	tig0019684:7667-7686	Msa1375460:intron	45.0%
	TTTGGGAAGAGGGTTTAGGA+GGG	-	tig0019684:7667-7686	Msa1375460:intergenic	45.0%
	TGTGTTTGGGAAGAGGGTTT+AGG	-	tig0019684:7663-7682	Msa1375460:intergenic	45.0%
!	TAAGGGTGTGTTTGGGAAGA+GGG	-	tig0019684:7883-7902	Msa1375460:intergenic	45.0%
!!	TCACAAGGGTTGATGCATTC+GGG	+	tig0019684:8118-8137	Msa1375460:CDS	45.0%
	AAGAATAAGCCGCCACCTTA+AGG	-	tig0019684:6859-6878	Msa1375460:intergenic	45.0%
!	AGTGGAACCTTTTCCCATTG+TGG	-	tig0019684:6923-6942	Msa1375460:intergenic	45.0%
	TCTTCTACTGTTGGAAGAGG+AGG	-	tig0019684:6953-6972	Msa1375460:intergenic	45.0%
	CCTTCTTCTACTGTTGGAAG+AGG	-	tig0019684:6956-6975	Msa1375460:intergenic	45.0%
	CCTCTTCCAACAGTAGAAGA+AGG	+	tig0019684:6953-6972	Msa1375460:CDS	45.0%
	TGGTGGAAATGCTCAATCCA+AGG	-	tig0019684:7056-7075	Msa1375460:intergenic	45.0%
	TGGCAACCAATTCAGCAACA+AGG	+	tig0019684:7202-7221	Msa1375460:CDS	45.0%
	CAACCAATTCAGCAACAAGG+CGG	+	tig0019684:7205-7224	Msa1375460:CDS	45.0%
	CAACAGTGCCTTCTTTGTGA+AGG	+	tig0019684:7252-7271	Msa1375460:CDS	45.0%
	AATGCATATATGAGGGGGAG+TGG	-	tig0019684:7393-7412	Msa1375460:intergenic	45.0%
!	TTTCGGTGTGTTTGGGAAGA+GGG	+	tig0019684:7657-7676	Msa1375460:intron	45.0%
	TGTGTTTGGGAAGAGGGTTT+AGG	+	tig0019684:7663-7682	Msa1375460:intron	45.0%
	TTTGGGAAGAGGGTTTAGGA+GGG	+	tig0019684:7667-7686	Msa1375460:intron	45.0%
	TTTGGGAAGAGGGTTTAGGA+GGG	-	tig0019684:7667-7686	Msa1375460:intergenic	45.0%
	TGTGTTTGGGAAGAGGGTTT+AGG	-	tig0019684:7663-7682	Msa1375460:intergenic	45.0%
!	TAAGGGTGTGTTTGGGAAGA+GGG	-	tig0019684:7883-7902	Msa1375460:intergenic	45.0%
!!	TCACAAGGGTTGATGCATTC+GGG	+	tig0019684:8118-8137	Msa1375460:CDS	45.0%
	GGAAGAGGAGGAAGAAGAAG+TGG	-	tig0019684:6941-6960	Msa1375460:intergenic	50.0%
!	TCACCGCCTTGTTGCTGAAT+TGG	-	tig0019684:7211-7230	Msa1375460:intergenic	50.0%
	TTATGGTTGGGGATGTCCCT+TGG	+	tig0019684:7555-7574	Msa1375460:CDS	50.0%
	TATGGTTGGGGATGTCCCTT+GGG	+	tig0019684:7556-7575	Msa1375460:CDS	50.0%
!	GTTTCGGTGTGTTTGGGAAG+AGG	+	tig0019684:7656-7675	Msa1375460:intron	50.0%
	GTTTGGGAAGAGGGTTTAGG+AGG	+	tig0019684:7666-7685	Msa1375460:intron	50.0%
	TTGGGAAGAGGGTTTAGGAG+GGG	+	tig0019684:7668-7687	Msa1375460:intron	50.0%
	AAGAGGGTTTAGGAGGGGAA+GGG	+	tig0019684:7673-7692	Msa1375460:intron	50.0%
	AAGAGGGTTTAGGAGGGGAA+GGG	-	tig0019684:7673-7692	Msa1375460:intergenic	50.0%
	TTGGGAAGAGGGTTTAGGAG+GGG	-	tig0019684:7668-7687	Msa1375460:intergenic	50.0%
	GTTTGGGAAGAGGGTTTAGG+AGG	-	tig0019684:7666-7685	Msa1375460:intergenic	50.0%
!	CTAAGGGTGTGTTTGGGAAG+AGG	-	tig0019684:7884-7903	Msa1375460:intergenic	50.0%
	GGAAGAGGAGGAAGAAGAAG+TGG	-	tig0019684:6941-6960	Msa1375460:intergenic	50.0%
!	TCACCGCCTTGTTGCTGAAT+TGG	-	tig0019684:7211-7230	Msa1375460:intergenic	50.0%
	TTATGGTTGGGGATGTCCCT+TGG	+	tig0019684:7555-7574	Msa1375460:CDS	50.0%
	TATGGTTGGGGATGTCCCTT+GGG	+	tig0019684:7556-7575	Msa1375460:CDS	50.0%
!	GTTTCGGTGTGTTTGGGAAG+AGG	+	tig0019684:7656-7675	Msa1375460:intron	50.0%
	GTTTGGGAAGAGGGTTTAGG+AGG	+	tig0019684:7666-7685	Msa1375460:intron	50.0%
	TTGGGAAGAGGGTTTAGGAG+GGG	+	tig0019684:7668-7687	Msa1375460:intron	50.0%
	AAGAGGGTTTAGGAGGGGAA+GGG	+	tig0019684:7673-7692	Msa1375460:intron	50.0%
	AAGAGGGTTTAGGAGGGGAA+GGG	-	tig0019684:7673-7692	Msa1375460:intergenic	50.0%
	TTGGGAAGAGGGTTTAGGAG+GGG	-	tig0019684:7668-7687	Msa1375460:intergenic	50.0%
	GTTTGGGAAGAGGGTTTAGG+AGG	-	tig0019684:7666-7685	Msa1375460:intergenic	50.0%
!	CTAAGGGTGTGTTTGGGAAG+AGG	-	tig0019684:7884-7903	Msa1375460:intergenic	50.0%
	TTTGCCAGGGGGGACTGAAA+TGG	+	tig0019684:7472-7491	Msa1375460:intron	55.0%
	GAAGAGGGTTTAGGAGGGGA+AGG	+	tig0019684:7672-7691	Msa1375460:intron	55.0%
	GAAGAGGGTTTAGGAGGGGA+AGG	-	tig0019684:7672-7691	Msa1375460:intergenic	55.0%
	TTTGCCAGGGGGGACTGAAA+TGG	+	tig0019684:7472-7491	Msa1375460:intron	55.0%
	GAAGAGGGTTTAGGAGGGGA+AGG	+	tig0019684:7672-7691	Msa1375460:intron	55.0%
	GAAGAGGGTTTAGGAGGGGA+AGG	-	tig0019684:7672-7691	Msa1375460:intergenic	55.0%
	CCATCCATTTCAGTCCCCCC+TGG	-	tig0019684:7479-7498	Msa1375460:intergenic	60.0%
	CCAGGGGGGACTGAAATGGA+TGG	+	tig0019684:7476-7495	Msa1375460:intron	60.0%
	AGGGTTTAGGAGGGGAAGGG+AGG	+	tig0019684:7676-7695	Msa1375460:intron	60.0%
	GGGTTTAGGAGGGGAAGGGA+GGG	+	tig0019684:7677-7696	Msa1375460:intron	60.0%
	GGTTTAGGAGGGGAAGGGAG+GGG	+	tig0019684:7678-7697	Msa1375460:intron	60.0%
	GGTTTAGGAGGGGAAGGGAG+GGG	-	tig0019684:7678-7697	Msa1375460:intergenic	60.0%
	GGGTTTAGGAGGGGAAGGGA+GGG	-	tig0019684:7677-7696	Msa1375460:intergenic	60.0%
	AGGGTTTAGGAGGGGAAGGG+AGG	-	tig0019684:7676-7695	Msa1375460:intergenic	60.0%
	CCATCCATTTCAGTCCCCCC+TGG	-	tig0019684:7479-7498	Msa1375460:intergenic	60.0%
	CCAGGGGGGACTGAAATGGA+TGG	+	tig0019684:7476-7495	Msa1375460:intron	60.0%
	AGGGTTTAGGAGGGGAAGGG+AGG	+	tig0019684:7676-7695	Msa1375460:intron	60.0%
	GGGTTTAGGAGGGGAAGGGA+GGG	+	tig0019684:7677-7696	Msa1375460:intron	60.0%
	GGTTTAGGAGGGGAAGGGAG+GGG	+	tig0019684:7678-7697	Msa1375460:intron	60.0%
	GGTTTAGGAGGGGAAGGGAG+GGG	-	tig0019684:7678-7697	Msa1375460:intergenic	60.0%
	GGGTTTAGGAGGGGAAGGGA+GGG	-	tig0019684:7677-7696	Msa1375460:intergenic	60.0%
	AGGGTTTAGGAGGGGAAGGG+AGG	-	tig0019684:7676-7695	Msa1375460:intergenic	60.0%
	TTAGGAGGGGAAGGGAGGGG+AGG	+	tig0019684:7681-7700	Msa1375460:intron	65.0%
	TAGGAGGGGAAGGGAGGGGA+GGG	+	tig0019684:7682-7701	Msa1375460:intron	65.0%
	TTAGGAGGGGAAGGGAGGGG+AGG	-	tig0019684:7681-7700	Msa1375460:intergenic	65.0%
	TTAGGAGGGGAAGGGAGGGG+AGG	+	tig0019684:7681-7700	Msa1375460:intron	65.0%
	TAGGAGGGGAAGGGAGGGGA+GGG	+	tig0019684:7682-7701	Msa1375460:intron	65.0%
	TTAGGAGGGGAAGGGAGGGG+AGG	-	tig0019684:7681-7700	Msa1375460:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0019684	gene	6765	8442	6765	ID=Msa1375460;Name=Msa1375460
tig0019684	mRNA	6765	8442	6765	ID=Msa1375460-mRNA-1;Parent=Msa1375460;Name=Msa1375460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=160\|1\|1\|1\|1\|1\|4\|296\|176
tig0019684	exon	6765	7106	6765	ID=Msa1375460-mRNA-1:exon:4544;Parent=Msa1375460-mRNA-1
tig0019684	exon	7195	7382	7195	ID=Msa1375460-mRNA-1:exon:4545;Parent=Msa1375460-mRNA-1
tig0019684	exon	7480	7579	7480	ID=Msa1375460-mRNA-1:exon:4546;Parent=Msa1375460-mRNA-1
tig0019684	exon	8086	8442	8086	ID=Msa1375460-mRNA-1:exon:4547;Parent=Msa1375460-mRNA-1
tig0019684	five_prime_UTR	6765	6924	6765	ID=Msa1375460-mRNA-1:five_prime_utr;Parent=Msa1375460-mRNA-1
tig0019684	CDS	6925	7106	6925	ID=Msa1375460-mRNA-1:cds;Parent=Msa1375460-mRNA-1
tig0019684	CDS	7195	7382	7195	ID=Msa1375460-mRNA-1:cds;Parent=Msa1375460-mRNA-1
tig0019684	CDS	7480	7579	7480	ID=Msa1375460-mRNA-1:cds;Parent=Msa1375460-mRNA-1
tig0019684	CDS	8086	8146	8086	ID=Msa1375460-mRNA-1:cds;Parent=Msa1375460-mRNA-1
tig0019684	three_prime_UTR	8147	8442	8147	ID=Msa1375460-mRNA-1:three_prime_utr;Parent=Msa1375460-mRNA-1

Gene Sequence

>Msa1375460

ATGGGAAAAGGTTCCACTTCTTCTTCCTCCTCTTCCAACAGTAGAAGAAGGAAACATAATTCCTCTAATGTTTCATCCTCTATCACACATCAAAATCCTGATCAACAACATCTTTTTCCTGATCTTAACCTTGGATTGAGCATTTCCACCACTCAACAATATGTTGATTATTCCACCTCAAGGGGACATTGGCAACCAATTCAGCAACAAGGCGGTGAAGTAAATGATTGCAGTGATTACAACAGTGCCTTCTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGGAGAAAGCTCAATTTGCTAGCTCATAATGGCTATCATGAGTTGGTTAATACACTTGAACAAATGTTTGACACTACCATTCTATGGGGGACTGAAATGGATGGAGTGCAATCAGAGAGATGTCATGTGTTAACTTATGAAGATGCAGAAGGAGACTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGGGTTGATGCATTCGGGCTTTAA

Protein sequence

>Msa1375460

MGKGSTSSSSSSNSRRRKHNSSNVSSSITHQNPDQQHLFPDLNLGLSISTTQQYVDYSTSRGHWQPIQQQGGEVNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNGYHELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDAEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGL*