AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00282

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00282.t1 MTR_2g436400 93.963 381 23 0 1 381 1 381 0.0 737
MS.gene00282.t1 MTR_2g437060 73.913 391 90 3 1 381 1 389 0.0 573
MS.gene00282.t1 MTR_2g437080 69.867 375 105 3 10 381 5 374 3.96e-180 505
MS.gene00282.t1 MTR_2g437020 65.699 379 120 4 5 381 4 374 1.02e-172 486
MS.gene00282.t1 MTR_2g437030 66.929 381 114 2 10 381 83 460 2.64e-172 489
MS.gene00282.t1 MTR_2g436440 63.660 388 126 3 1 381 1 380 2.04e-170 481
MS.gene00282.t1 MTR_2g437040 63.202 356 130 1 27 381 19 374 1.82e-157 448
MS.gene00282.t1 MTR_4g119550 51.471 340 162 2 43 381 47 384 7.76e-122 358
MS.gene00282.t1 MTR_2g437170 49.351 385 176 4 16 381 10 394 3.85e-120 354
MS.gene00282.t1 MTR_2g437960 49.057 371 173 3 27 381 20 390 1.52e-118 350
MS.gene00282.t1 MTR_2g437960 49.057 371 173 3 27 381 20 390 3.12e-118 350
MS.gene00282.t1 MTR_2g437150 49.211 380 174 4 16 376 10 389 6.47e-118 348
MS.gene00282.t1 MTR_2g437120 49.051 369 171 5 25 377 16 383 3.71e-115 342
MS.gene00282.t1 MTR_2g438010 50.000 346 166 2 43 381 62 407 1.23e-114 340
MS.gene00282.t1 MTR_2g437160 48.525 373 176 5 25 381 27 399 1.23e-113 337
MS.gene00282.t1 MTR_2g437180 50.877 342 161 4 39 377 43 380 1.90e-113 337
MS.gene00282.t1 MTR_2g437100 50.272 368 160 5 33 377 28 395 1.95e-111 332
MS.gene00282.t1 MTR_2g437200 47.200 375 158 3 41 377 26 398 4.68e-111 330
MS.gene00282.t1 MTR_2g437130 48.753 361 173 4 29 381 19 375 7.03e-111 330
MS.gene00282.t1 MTR_2g076320 48.148 351 173 3 40 381 37 387 1.29e-110 329
MS.gene00282.t1 MTR_2g437990 48.406 345 172 2 43 381 42 386 4.67e-109 327
MS.gene00282.t1 MTR_2g437240 45.238 378 167 4 42 381 27 402 5.37e-107 321
MS.gene00282.t1 MTR_2g437260 46.726 336 175 2 43 376 32 365 1.58e-106 318
MS.gene00282.t1 MTR_2g436460 46.199 342 181 2 37 377 37 376 2.36e-106 318
MS.gene00282.t1 MTR_2g019840 47.619 378 185 8 10 381 5 375 7.50e-105 314
MS.gene00282.t1 MTR_2g438020 46.486 370 158 4 46 377 70 437 2.03e-102 311
MS.gene00282.t1 MTR_2g436370 77.041 196 44 1 1 196 1 195 9.74e-102 300
MS.gene00282.t1 MTR_2g437940 46.216 370 159 5 25 381 16 358 3.51e-101 304
MS.gene00282.t1 MTR_2g019810 46.108 334 174 4 48 379 32 361 5.30e-96 291
MS.gene00282.t1 MTR_4g120380 43.988 341 187 2 37 375 32 370 7.42e-94 286
MS.gene00282.t1 MTR_4g119580 42.566 343 195 1 33 375 30 370 6.11e-92 281
MS.gene00282.t1 MTR_4g120380 44.237 321 175 2 37 355 32 350 1.01e-87 271
MS.gene00282.t1 MTR_2g437090 69.136 162 50 0 220 381 1 162 8.72e-77 234
MS.gene00282.t1 MTR_2g437160 54.082 196 87 1 189 381 113 308 1.10e-65 211
MS.gene00282.t1 MTR_2g437160 39.370 127 59 4 25 137 27 149 1.98e-16 79.7
MS.gene00282.t1 MTR_3g450500 33.333 336 212 5 48 375 39 370 2.54e-55 186
MS.gene00282.t1 MTR_4g007490 31.250 352 232 6 35 379 24 372 1.82e-49 171
MS.gene00282.t1 MTR_4g119570 38.057 247 120 2 127 373 14 227 1.17e-48 164
MS.gene00282.t1 MTR_8g080990 29.153 295 206 2 80 371 74 368 1.41e-36 137
MS.gene00282.t1 MTR_8g081000 26.885 305 220 2 74 375 81 385 3.60e-33 128
MS.gene00282.t1 MTR_8g081000 26.885 305 220 2 74 375 81 385 4.75e-33 127
MS.gene00282.t1 MTR_8g081000 26.885 305 220 2 74 375 81 385 4.87e-33 128
MS.gene00282.t1 MTR_2g436380 55.752 113 43 3 220 332 1 106 1.70e-30 118
MS.gene00282.t1 MTR_4g049400 41.228 114 63 1 39 148 38 151 4.46e-20 88.6
MS.gene00282.t1 MTR_3g085240 62.264 53 20 0 279 331 176 228 1.93e-15 75.9
MS.gene00282.t1 MTR_3g085240 31.081 148 90 3 22 169 35 170 7.37e-11 62.4
MS.gene00282.t1 MTR_4g119615 60.000 50 20 0 319 368 26 75 7.40e-14 67.4
MS.gene00282.t1 MTR_2g019830 55.385 65 28 1 313 377 136 199 2.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00282.t1 AT5G07900 33.634 333 213 4 48 374 69 399 5.90e-64 209
MS.gene00282.t1 AT1G21150 29.226 349 237 5 37 378 9 354 4.41e-48 167
MS.gene00282.t1 AT1G21150 29.499 339 227 6 48 378 56 390 1.91e-46 163
MS.gene00282.t1 AT1G21150 29.499 339 227 6 48 378 120 454 7.02e-46 163
MS.gene00282.t1 AT1G61980 27.027 370 203 7 48 366 52 405 9.65e-37 138
MS.gene00282.t1 AT1G61980 27.027 370 203 7 48 366 52 405 9.65e-37 138
MS.gene00282.t1 AT1G61980 27.027 370 203 7 48 366 52 405 9.65e-37 138
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G61970 26.131 398 242 8 10 360 7 399 7.42e-34 130
MS.gene00282.t1 AT1G62120 25.743 404 246 10 8 366 17 411 1.21e-33 130
MS.gene00282.t1 AT5G64950 29.526 359 228 9 36 375 24 376 2.27e-32 125
MS.gene00282.t1 AT1G61990 27.123 365 214 8 51 374 55 408 4.69e-32 125
MS.gene00282.t1 AT1G61990 27.123 365 214 8 51 374 55 408 4.69e-32 125
MS.gene00282.t1 AT3G46950 23.490 447 251 11 8 378 17 448 4.40e-31 123
MS.gene00282.t1 AT1G62010 25.466 322 199 6 83 366 71 389 4.98e-28 114
MS.gene00282.t1 AT1G62110 26.370 292 193 5 8 290 17 295 4.46e-26 109
MS.gene00282.t1 AT1G62085 27.273 396 206 14 48 366 55 445 1.90e-25 107
MS.gene00282.t1 AT1G62085 27.273 396 206 14 48 366 55 445 1.90e-25 107
MS.gene00282.t1 AT1G61960 29.876 241 165 3 51 289 55 293 1.11e-24 105
MS.gene00282.t1 AT5G23930 26.087 276 193 4 8 282 18 283 1.58e-20 93.2
MS.gene00282.t1 AT1G62150 27.344 256 171 6 42 289 52 300 4.43e-20 92.0

Find 80 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATCTGACAAGGAAATTT+TGG 0.116874 2.2:-52671994 MS.gene00282:CDS
GGAAAAGAGGGTTAGGGTTT+GGG 0.197496 2.2:+52672402 None:intergenic
TAAATTTAGTGATGAACTTT+TGG 0.210123 2.2:-52671623 MS.gene00282:CDS
GTGAAGGAATTAAAGGATTT+GGG 0.230293 2.2:-52671819 MS.gene00282:CDS
AGACCAACCCCATTTCTTAA+AGG 0.251614 2.2:+52671710 None:intergenic
GGTATTGTTTACTGTTGTTT+TGG 0.253046 2.2:+52671755 None:intergenic
ATGGTTGGTGGAACAGAGTT+TGG 0.256699 2.2:+52672292 None:intergenic
GTCACATTCTTTAGAAACTA+TGG 0.267215 2.2:-52672233 MS.gene00282:CDS
AAACTTAATGACAAAATATA+AGG 0.279924 2.2:+52671558 None:intergenic
GGTGAAGGAATTAAAGGATT+TGG 0.282534 2.2:-52671820 MS.gene00282:CDS
AAGAATGTGACAACAGATTC+AGG 0.288262 2.2:+52672245 None:intergenic
ATAGATGTTAACATAGAATA+AGG 0.294532 2.2:+52671654 None:intergenic
TCCTACCTCATCAACAATAT+TGG 0.301774 2.2:-52672335 MS.gene00282:CDS
TGGAAAAGAGGGTTAGGGTT+TGG 0.315934 2.2:+52672401 None:intergenic
TGACAAAATATAAGGTTGTT+TGG 0.318444 2.2:+52671566 None:intergenic
AAACTTTGGCAACACCGTTT+TGG 0.327649 2.2:+52672145 None:intergenic
TCCCTTGAGATAATTGATTA+GGG 0.328607 2.2:+52672451 None:intergenic
ATCCCTTGAGATAATTGATT+AGG 0.337905 2.2:+52672450 None:intergenic
AATTGATTAGGGTTCTTCTA+TGG 0.346518 2.2:+52672462 None:intergenic
TGTTCAACATCAATTCTTCA+TGG 0.364493 2.2:-52672487 MS.gene00282:CDS
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 2.2:-52671719 MS.gene00282:CDS
TTGGGTTAATCAGTTGGGTT+GGG 0.370112 2.2:-52671604 MS.gene00282:CDS
GAAAAGAGGGTTAGGGTTTG+GGG 0.370673 2.2:+52672403 None:intergenic
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 2.2:-52671718 MS.gene00282:CDS
TTTGGGGATTGTGATGTTAG+AGG 0.390306 2.2:+52672419 None:intergenic
AAATGGTGGAAAAGAGGGTT+AGG 0.393469 2.2:+52672395 None:intergenic
GAAGTCGGTGAAGGAATTAA+AGG 0.395695 2.2:-52671826 MS.gene00282:CDS
AACTTATCAGTCACTACAAA+TGG 0.416436 2.2:+52671450 None:intergenic
GTCAGAGGTAGAAGCACCTT+TGG 0.417863 2.2:+52672109 None:intergenic
TTGGGGATTGTGATGTTAGA+GGG 0.419030 2.2:+52672420 None:intergenic
CATCAACTTTCTCTTTCCAT+AGG 0.426803 2.2:+52671733 None:intergenic
TGGCAATCATATCGCGTAGT+TGG 0.438979 2.2:+52672198 None:intergenic
GGTTTGCAGGAAAGCAGCTC+TGG 0.441213 2.2:+52672170 None:intergenic
GGCAATCATATCGCGTAGTT+GGG 0.453430 2.2:+52672199 None:intergenic
CTGAAGTGTTGGTGCAGAAA+TGG 0.455082 2.2:+52672378 None:intergenic
AATAGTCCCAGCCTATGAAT+TGG 0.461317 2.2:-52672030 MS.gene00282:CDS
TCACAATGCTGATTCAGAAT+GGG 0.468303 2.2:-52671917 MS.gene00282:CDS
ATCACAATGCTGATTCAGAA+TGG 0.471702 2.2:-52671918 MS.gene00282:CDS
GGAAAGCAGCTCTGGCATCT+TGG 0.471973 2.2:+52672178 None:intergenic
GAATCTGTACACCAATTCAT+AGG 0.473956 2.2:+52672019 None:intergenic
CTGTACACCAATTCATAGGC+TGG 0.485721 2.2:+52672023 None:intergenic
TTTGGGTTAATCAGTTGGGT+TGG 0.486214 2.2:-52671605 MS.gene00282:CDS
TCAGTTGGGTTGGGATGCTA+TGG 0.487108 2.2:-52671595 MS.gene00282:CDS
CTGGGACTATTTGATTCTTG+AGG 0.490835 2.2:+52672042 None:intergenic
CAGAGTTTGGAAGCAGATTG+TGG 0.492532 2.2:+52672305 None:intergenic
GGGTGGTTTCGAAACGAAGA+TGG 0.498641 2.2:+52672273 None:intergenic
AACCCTAATCAATTATCTCA+AGG 0.502785 2.2:-52672453 MS.gene00282:CDS
TGGGGATTGTGATGTTAGAG+GGG 0.504801 2.2:+52672421 None:intergenic
AATATAAGGTTGTTTGGCAA+TGG 0.508469 2.2:+52671572 None:intergenic
AGAGTTTGGAAGCAGATTGT+GGG 0.513374 2.2:+52672306 None:intergenic
TGCAGAAATGGTGGAAAAGA+GGG 0.515244 2.2:+52672390 None:intergenic
ATCAACTTTCTCTTTCCATA+GGG 0.521600 2.2:+52671734 None:intergenic
CAACAGTAAACAATACCCTA+TGG 0.530932 2.2:-52671749 MS.gene00282:CDS
GTGCAGAAATGGTGGAAAAG+AGG 0.534389 2.2:+52672389 None:intergenic
GTGCAATTTCTTCTCAACAA+AGG 0.536369 2.2:-52671504 MS.gene00282:CDS
TTCGAAACGAAGATGGTTGG+TGG 0.541769 2.2:+52672280 None:intergenic
TTCCTGCAAACCCTCCAAAA+CGG 0.545667 2.2:-52672159 MS.gene00282:CDS
AATGGTGGAAAAGAGGGTTA+GGG 0.547641 2.2:+52672396 None:intergenic
AATTGCACAACAGCGGCCCT+CGG 0.562081 2.2:+52671519 None:intergenic
CAAAACCAATATTGTTGATG+AGG 0.562530 2.2:+52672330 None:intergenic
AGGCTTACATACAAGACTCT+AGG 0.563542 2.2:+52672062 None:intergenic
CATTGCTGAGGGAACAGACT+CGG 0.569500 2.2:-52671872 MS.gene00282:CDS
ACCCTAATCAATTATCTCAA+GGG 0.570256 2.2:-52672452 MS.gene00282:CDS
GAGGTAGGAGACTGCAAGAG+AGG 0.570893 2.2:+52672349 None:intergenic
GTTGATGCCTTTAAGAAATG+GGG 0.573670 2.2:-52671717 MS.gene00282:CDS
CAGATTCTTGCAATCTGACA+AGG 0.575407 2.2:-52672003 MS.gene00282:CDS
ACCAATATTGTTGATGAGGT+AGG 0.575620 2.2:+52672334 None:intergenic
GGTTTCGAAACGAAGATGGT+TGG 0.584740 2.2:+52672277 None:intergenic
TGAAGGAATTAAAGGATTTG+GGG 0.597102 2.2:-52671818 MS.gene00282:CDS
AAACATTAAATCATTGCTGA+GGG 0.598387 2.2:-52671883 MS.gene00282:CDS
ATGCCTTTAAGAAATGGGGT+TGG 0.598819 2.2:-52671713 MS.gene00282:CDS
TGTACACCAATTCATAGGCT+GGG 0.603503 2.2:+52672024 None:intergenic
CACAATGCTGATTCAGAATG+GGG 0.608246 2.2:-52671916 MS.gene00282:CDS
TGACATGCTGAAGTCGGTGA+AGG 0.609764 2.2:-52671835 MS.gene00282:CDS
CAAACATTAAATCATTGCTG+AGG 0.611140 2.2:-52671884 MS.gene00282:CDS
AGAGGTTGAATCTGAAGTGT+TGG 0.626308 2.2:+52672367 None:intergenic
GACAATGTTAACAATGTCAG+AGG 0.628038 2.2:+52672094 None:intergenic
GAGACGTGACATGCTGAAGT+CGG 0.633753 2.2:-52671841 MS.gene00282:CDS
GAGAAGAAATTGCACAACAG+CGG 0.635644 2.2:+52671512 None:intergenic
AAGTGTTGGTGCAGAAATGG+TGG 0.640434 2.2:+52672381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAATGACAAAATATA+AGG + chr2.2:52672298-52672317 None:intergenic 15.0%
!!! TTATATTTTGTCATTAAGTT+TGG - chr2.2:52672297-52672316 MS.gene00282:CDS 15.0%
!! ATAGATGTTAACATAGAATA+AGG + chr2.2:52672202-52672221 None:intergenic 20.0%
!!! AAATTTAGTGATGAACTTTT+GGG - chr2.2:52672231-52672250 MS.gene00282:CDS 20.0%
!!! TAAATTTAGTGATGAACTTT+TGG - chr2.2:52672230-52672249 MS.gene00282:CDS 20.0%
!!! TTATCTTTTAAAGTTGTATG+AGG - chr2.2:52672468-52672487 MS.gene00282:CDS 20.0%
! AAACATTAAATCATTGCTGA+GGG - chr2.2:52671970-52671989 MS.gene00282:CDS 25.0%
! GAGAGAAAAAATTGAAACTT+TGG + chr2.2:52671725-52671744 None:intergenic 25.0%
! TGACAAAATATAAGGTTGTT+TGG + chr2.2:52672290-52672309 None:intergenic 25.0%
! TGTCATTAAGTTTGGAAAAA+AGG - chr2.2:52672305-52672324 MS.gene00282:CDS 25.0%
!! AATCCTTCAAAAACAACTTT+TGG - chr2.2:52672061-52672080 MS.gene00282:CDS 25.0%
!!! TATAAAACGTTTTGAGAATG+AGG - chr2.2:52672441-52672460 MS.gene00282:CDS 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG - chr2.2:52671728-52671747 MS.gene00282:CDS 25.0%
AACCCTAATCAATTATCTCA+AGG - chr2.2:52671400-52671419 MS.gene00282:CDS 30.0%
AACTTATCAGTCACTACAAA+TGG + chr2.2:52672406-52672425 None:intergenic 30.0%
AATATAAGGTTGTTTGGCAA+TGG + chr2.2:52672284-52672303 None:intergenic 30.0%
AATTGATTAGGGTTCTTCTA+TGG + chr2.2:52671394-52671413 None:intergenic 30.0%
ACCCTAATCAATTATCTCAA+GGG - chr2.2:52671401-52671420 MS.gene00282:CDS 30.0%
ATCAACTTTCTCTTTCCATA+GGG + chr2.2:52672122-52672141 None:intergenic 30.0%
ATCCCTTGAGATAATTGATT+AGG + chr2.2:52671406-52671425 None:intergenic 30.0%
CAAAACCAATATTGTTGATG+AGG + chr2.2:52671526-52671545 None:intergenic 30.0%
CAAACATTAAATCATTGCTG+AGG - chr2.2:52671969-52671988 MS.gene00282:CDS 30.0%
GTGAAGGAATTAAAGGATTT+GGG - chr2.2:52672034-52672053 MS.gene00282:CDS 30.0%
TCCCTTGAGATAATTGATTA+GGG + chr2.2:52671405-52671424 None:intergenic 30.0%
TGAAGGAATTAAAGGATTTG+GGG - chr2.2:52672035-52672054 MS.gene00282:CDS 30.0%
TGTTCAACATCAATTCTTCA+TGG - chr2.2:52671366-52671385 MS.gene00282:CDS 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG - chr2.2:52672135-52672154 MS.gene00282:CDS 30.0%
! GTCACATTCTTTAGAAACTA+TGG - chr2.2:52671620-52671639 MS.gene00282:CDS 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG - chr2.2:52672134-52672153 MS.gene00282:CDS 30.0%
!! GGTATTGTTTACTGTTGTTT+TGG + chr2.2:52672101-52672120 None:intergenic 30.0%
!!! AACTTTTGGGTTAATCAGTT+GGG - chr2.2:52672244-52672263 MS.gene00282:CDS 30.0%
!!! ACACCAAAAGTTGTTTTTGA+AGG + chr2.2:52672067-52672086 None:intergenic 30.0%
AAGAATGTGACAACAGATTC+AGG + chr2.2:52671611-52671630 None:intergenic 35.0%
CAACAGTAAACAATACCCTA+TGG - chr2.2:52672104-52672123 MS.gene00282:CDS 35.0%
CATCAACTTTCTCTTTCCAT+AGG + chr2.2:52672123-52672142 None:intergenic 35.0%
GAATCTGTACACCAATTCAT+AGG + chr2.2:52671837-52671856 None:intergenic 35.0%
GACAATGTTAACAATGTCAG+AGG + chr2.2:52671762-52671781 None:intergenic 35.0%
GGTGAAGGAATTAAAGGATT+TGG - chr2.2:52672033-52672052 MS.gene00282:CDS 35.0%
GTGCAATTTCTTCTCAACAA+AGG - chr2.2:52672349-52672368 MS.gene00282:CDS 35.0%
TATGAGGAAAAACGCAATCT+AGG - chr2.2:52672484-52672503 MS.gene00282:CDS 35.0%
TCCTACCTCATCAACAATAT+TGG - chr2.2:52671518-52671537 MS.gene00282:CDS 35.0%
! ACCAATATTGTTGATGAGGT+AGG + chr2.2:52671522-52671541 None:intergenic 35.0%
! GCAATCTGACAAGGAAATTT+TGG - chr2.2:52671859-52671878 MS.gene00282:CDS 35.0%
! GTTGATGCCTTTAAGAAATG+GGG - chr2.2:52672136-52672155 MS.gene00282:CDS 35.0%
!! ATCACAATGCTGATTCAGAA+TGG - chr2.2:52671935-52671954 MS.gene00282:CDS 35.0%
!! GACAACAGATTCAGGTTTTT+GGG + chr2.2:52671603-52671622 None:intergenic 35.0%
!! TCACAATGCTGATTCAGAAT+GGG - chr2.2:52671936-52671955 MS.gene00282:CDS 35.0%
!! TGACAACAGATTCAGGTTTT+TGG + chr2.2:52671604-52671623 None:intergenic 35.0%
!!! GAACTTTTGGGTTAATCAGT+TGG - chr2.2:52672243-52672262 MS.gene00282:CDS 35.0%
AATAGTCCCAGCCTATGAAT+TGG - chr2.2:52671823-52671842 MS.gene00282:CDS 40.0%
AGACCAACCCCATTTCTTAA+AGG + chr2.2:52672146-52672165 None:intergenic 40.0%
AGAGTTTGGAAGCAGATTGT+GGG + chr2.2:52671550-52671569 None:intergenic 40.0%
AGGCTTACATACAAGACTCT+AGG + chr2.2:52671794-52671813 None:intergenic 40.0%
CAGATTCTTGCAATCTGACA+AGG - chr2.2:52671850-52671869 MS.gene00282:CDS 40.0%
CTGGGACTATTTGATTCTTG+AGG + chr2.2:52671814-52671833 None:intergenic 40.0%
GAAGTCGGTGAAGGAATTAA+AGG - chr2.2:52672027-52672046 MS.gene00282:CDS 40.0%
GAGAAGAAATTGCACAACAG+CGG + chr2.2:52672344-52672363 None:intergenic 40.0%
GGAAAAAAGGATCATTCCGA+GGG - chr2.2:52672318-52672337 MS.gene00282:CDS 40.0%
TGGAAAAAAGGATCATTCCG+AGG - chr2.2:52672317-52672336 MS.gene00282:CDS 40.0%
TGTACACCAATTCATAGGCT+GGG + chr2.2:52671832-52671851 None:intergenic 40.0%
TTGGGGATTGTGATGTTAGA+GGG + chr2.2:52671436-52671455 None:intergenic 40.0%
TTGGGTTAATCAGTTGGGTT+GGG - chr2.2:52672249-52672268 MS.gene00282:CDS 40.0%
TTTGGGGATTGTGATGTTAG+AGG + chr2.2:52671437-52671456 None:intergenic 40.0%
! AAACTTTGGCAACACCGTTT+TGG + chr2.2:52671711-52671730 None:intergenic 40.0%
! AAATGGTGGAAAAGAGGGTT+AGG + chr2.2:52671461-52671480 None:intergenic 40.0%
! AATGGTGGAAAAGAGGGTTA+GGG + chr2.2:52671460-52671479 None:intergenic 40.0%
! AGAGGTTGAATCTGAAGTGT+TGG + chr2.2:52671489-52671508 None:intergenic 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG - chr2.2:52672140-52672159 MS.gene00282:CDS 40.0%
! TGCAGAAATGGTGGAAAAGA+GGG + chr2.2:52671466-52671485 None:intergenic 40.0%
! TTTGGGTTAATCAGTTGGGT+TGG - chr2.2:52672248-52672267 MS.gene00282:CDS 40.0%
!! AACAGATTCAGGTTTTTGGG+TGG + chr2.2:52671600-52671619 None:intergenic 40.0%
!! CACAATGCTGATTCAGAATG+GGG - chr2.2:52671937-52671956 MS.gene00282:CDS 40.0%
CAGAGTTTGGAAGCAGATTG+TGG + chr2.2:52671551-52671570 None:intergenic 45.0%
CTGTACACCAATTCATAGGC+TGG + chr2.2:52671833-52671852 None:intergenic 45.0%
GAAAAGAGGGTTAGGGTTTG+GGG + chr2.2:52671453-52671472 None:intergenic 45.0%
GGAAAAGAGGGTTAGGGTTT+GGG + chr2.2:52671454-52671473 None:intergenic 45.0%
GGCAATCATATCGCGTAGTT+GGG + chr2.2:52671657-52671676 None:intergenic 45.0%
GGTTTCGAAACGAAGATGGT+TGG + chr2.2:52671579-52671598 None:intergenic 45.0%
TGGAAAAGAGGGTTAGGGTT+TGG + chr2.2:52671455-52671474 None:intergenic 45.0%
TGGCAATCATATCGCGTAGT+TGG + chr2.2:52671658-52671677 None:intergenic 45.0%
TGGGGATTGTGATGTTAGAG+GGG + chr2.2:52671435-52671454 None:intergenic 45.0%
TTCCTGCAAACCCTCCAAAA+CGG - chr2.2:52671694-52671713 MS.gene00282:CDS 45.0%
TTCGAAACGAAGATGGTTGG+TGG + chr2.2:52671576-52671595 None:intergenic 45.0%
! GTGCAGAAATGGTGGAAAAG+AGG + chr2.2:52671467-52671486 None:intergenic 45.0%
!! AAGTGTTGGTGCAGAAATGG+TGG + chr2.2:52671475-52671494 None:intergenic 45.0%
!! ATGGTTGGTGGAACAGAGTT+TGG + chr2.2:52671564-52671583 None:intergenic 45.0%
!! CTGAAGTGTTGGTGCAGAAA+TGG + chr2.2:52671478-52671497 None:intergenic 45.0%
!! TTTGGCAACACCGTTTTGGA+GGG + chr2.2:52671707-52671726 None:intergenic 45.0%
CATTGCTGAGGGAACAGACT+CGG - chr2.2:52671981-52672000 MS.gene00282:CDS 50.0%
GAGACGTGACATGCTGAAGT+CGG - chr2.2:52672012-52672031 MS.gene00282:CDS 50.0%
GGGTGGTTTCGAAACGAAGA+TGG + chr2.2:52671583-52671602 None:intergenic 50.0%
TGACATGCTGAAGTCGGTGA+AGG - chr2.2:52672018-52672037 MS.gene00282:CDS 50.0%
! CTTTGGCAACACCGTTTTGG+AGG + chr2.2:52671708-52671727 None:intergenic 50.0%
!! GTCAGAGGTAGAAGCACCTT+TGG + chr2.2:52671747-52671766 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG - chr2.2:52672258-52672277 MS.gene00282:CDS 50.0%
AATTGCACAACAGCGGCCCT+CGG + chr2.2:52672337-52672356 None:intergenic 55.0%
GAGGTAGGAGACTGCAAGAG+AGG + chr2.2:52671507-52671526 None:intergenic 55.0%
GGTTTGCAGGAAAGCAGCTC+TGG + chr2.2:52671686-52671705 None:intergenic 55.0%
! GGAAAGCAGCTCTGGCATCT+TGG + chr2.2:52671678-52671697 None:intergenic 55.0%
!!! CACCGTTTTGGAGGGTTTGC+AGG + chr2.2:52671699-52671718 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 52671365 52672510 52671365 ID=MS.gene00282
chr2.2 mRNA 52671365 52672510 52671365 ID=MS.gene00282.t1;Parent=MS.gene00282
chr2.2 exon 52671365 52672510 52671365 ID=MS.gene00282.t1.exon1;Parent=MS.gene00282.t1
chr2.2 CDS 52671365 52672510 52671365 ID=cds.MS.gene00282.t1;Parent=MS.gene00282.t1
Gene Sequence

>MS.gene00282

ATGTTCAACATCAATTCTTCATGGCGCCATAGAAGAACCCTAATCAATTATCTCAAGGGATTCACTACCCCTCTAACATCACAATCCCCAAACCCTAACCCTCTTTTCCACCATTTCTGCACCAACACTTCAGATTCAACCTCTCTTGCAGTCTCCTACCTCATCAACAATATTGGTTTTGACCCACAATCTGCTTCCAAACTCTGTTCCACCAACCATCTTCGTTTCGAAACCACCCAAAAACCTGAATCTGTTGTCACATTCTTTAGAAACTATGGTTTCTCTAATTCCCAACTACGCGATATGATTGCCAAGATGCCAGAGCTGCTTTCCTGCAAACCCTCCAAAACGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTGACATTGTTAACATTGTCAGTAAGACTCCTAGAGTCTTGTATGTAAGCCTCAAGAATCAAATAGTCCCAGCCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGAAAAGTTGAATCACAGTGCAAATTTACTTTGTGATTGTACTGTGCAAAATAACATCACAATGCTGATTCAGAATGGGGTGTCTGACTCAAACATTAAATCATTGCTGAGGGAACAGACTCGGATATTCAAGAGACGTGACATGCTGAAGTCGGTGAAGGAATTAAAGGATTTGGGGTTTAATCCTTCAAAAACAACTTTTGGTGTAGCATTGCATGCCAAAACAACAGTAAACAATACCCTATGGAAAGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGAAGAAGATTCTCTCGAAGCATTTAGAAAGAAACCTTATTCTATGTTAACATCTATTGATAAAATAAATTTAGTGATGAACTTTTGGGTTAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAACAACCTTATATTTTGTCATTAAGTTTGGAAAAAAGGATCATTCCGAGGGCCGCTGTTGTGCAATTTCTTCTCAACAAAGGTTTGACAGATAAGAACGCAAGCTTAACTTATCCATTTGTAGTGACTGATAAGTTGTTTCTTAATATGTTTATAAAACGTTTTGAGAATGAGGCTTCTTATCTTTTAAAGTTGTATGAGGAAAAACGCAATCTAGGATAG
Protein sequence

>MS.gene00282.t1

MFNINSSWRHRRTLINYLKGFTTPLTSQSPNPNPLFHHFCTNTSDSTSLAVSYLINNIGFDPQSASKLCSTNHLRFETTQKPESVVTFFRNYGFSNSQLRDMIAKMPELLSCKPSKTVLPKFQFFLSKGASTSDIVNIVSKTPRVLYVSLKNQIVPAYELVYRFLQSDKEILEKLNHSANLLCDCTVQNNITMLIQNGVSDSNIKSLLREQTRIFKRRDMLKSVKELKDLGFNPSKTTFGVALHAKTTVNNTLWKEKVDAFKKWGWSEEDSLEAFRKKPYSMLTSIDKINLVMNFWVNQLGWDAMAIAKQPYILSLSLEKRIIPRAAVVQFLLNKGLTDKNASLTYPFVVTDKLFLNMFIKRFENEASYLLKLYEEKRNLG