AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004588

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004588.t1 MTR_2g437130 92.545 389 25 2 1 387 1 387 0.0 724
MS.gene004588.t1 MTR_2g437200 59.845 386 117 2 23 370 12 397 3.03e-156 446
MS.gene004588.t1 MTR_2g437170 60.582 378 131 5 25 384 26 403 2.37e-151 434
MS.gene004588.t1 MTR_2g437120 61.918 365 130 5 28 385 35 397 9.45e-151 432
MS.gene004588.t1 MTR_2g076320 61.186 371 132 4 29 387 29 399 2.31e-150 431
MS.gene004588.t1 MTR_2g437160 59.178 365 143 3 27 385 45 409 9.78e-150 429
MS.gene004588.t1 MTR_2g437990 60.811 370 134 4 29 387 29 398 2.17e-149 429
MS.gene004588.t1 MTR_2g437150 59.474 380 136 5 25 386 26 405 2.99e-149 428
MS.gene004588.t1 MTR_2g437960 60.345 348 133 2 45 387 55 402 8.47e-148 425
MS.gene004588.t1 MTR_2g437960 60.345 348 133 2 45 387 55 402 1.35e-147 424
MS.gene004588.t1 MTR_2g438010 59.331 359 137 3 38 387 61 419 4.92e-146 421
MS.gene004588.t1 MTR_2g437240 55.860 401 138 3 25 387 15 414 1.64e-144 417
MS.gene004588.t1 MTR_2g438020 54.948 384 134 3 42 387 70 452 2.46e-139 406
MS.gene004588.t1 MTR_2g437180 56.749 363 149 4 29 386 36 395 1.80e-136 395
MS.gene004588.t1 MTR_2g437940 53.015 398 146 5 3 387 1 370 1.98e-133 387
MS.gene004588.t1 MTR_2g437100 56.704 358 139 4 29 370 37 394 6.58e-131 382
MS.gene004588.t1 MTR_2g437080 52.247 356 166 2 27 378 22 377 9.42e-125 365
MS.gene004588.t1 MTR_2g436440 49.614 389 182 5 8 383 1 388 5.28e-119 350
MS.gene004588.t1 MTR_2g437020 50.402 373 180 3 11 379 7 378 1.32e-117 347
MS.gene004588.t1 MTR_2g437060 50.833 360 170 3 27 379 34 393 4.52e-116 343
MS.gene004588.t1 MTR_2g437260 46.594 367 185 3 32 387 21 387 1.58e-115 342
MS.gene004588.t1 MTR_2g437030 50.144 347 171 1 39 383 122 468 3.07e-114 341
MS.gene004588.t1 MTR_2g437040 48.343 362 183 2 26 383 21 382 2.65e-113 336
MS.gene004588.t1 MTR_2g436400 47.013 385 173 6 11 375 8 381 3.79e-113 335
MS.gene004588.t1 MTR_4g119550 51.462 342 165 1 39 379 47 388 4.96e-113 335
MS.gene004588.t1 MTR_2g436460 50.592 338 166 1 38 374 42 379 1.22e-106 319
MS.gene004588.t1 MTR_4g119580 45.429 350 187 2 20 369 25 370 1.08e-95 291
MS.gene004588.t1 MTR_4g120380 44.324 370 198 4 8 369 1 370 1.32e-94 288
MS.gene004588.t1 MTR_4g120380 44.857 350 185 4 8 349 1 350 3.58e-89 275
MS.gene004588.t1 MTR_2g437160 62.927 205 73 1 184 385 114 318 9.30e-89 271
MS.gene004588.t1 MTR_2g019810 42.618 359 202 3 22 378 10 366 8.29e-85 262
MS.gene004588.t1 MTR_2g019840 41.056 341 197 3 38 376 38 376 2.85e-80 251
MS.gene004588.t1 MTR_2g437090 50.588 170 84 0 215 384 2 171 7.06e-58 186
MS.gene004588.t1 MTR_4g007490 31.467 375 242 7 3 369 1 368 1.58e-48 169
MS.gene004588.t1 MTR_3g450500 30.081 369 248 4 11 369 2 370 5.21e-48 167
MS.gene004588.t1 MTR_4g119570 36.111 252 128 1 121 372 14 232 2.01e-46 159
MS.gene004588.t1 MTR_2g436370 44.670 197 93 6 8 190 1 195 1.79e-36 132
MS.gene004588.t1 MTR_8g081000 27.083 336 241 3 38 369 50 385 1.02e-34 132
MS.gene004588.t1 MTR_8g081000 27.083 336 241 3 38 369 50 385 1.04e-34 132
MS.gene004588.t1 MTR_8g081000 27.083 336 241 3 38 369 50 385 1.62e-34 132
MS.gene004588.t1 MTR_8g080990 28.012 332 235 3 38 365 37 368 1.73e-33 128
MS.gene004588.t1 MTR_3g085240 57.778 90 21 1 273 362 176 248 1.81e-24 101
MS.gene004588.t1 MTR_3g085240 37.838 185 98 4 25 205 35 206 1.65e-21 93.2
MS.gene004588.t1 MTR_4g049400 44.882 127 62 3 21 141 26 150 6.90e-20 88.2
MS.gene004588.t1 MTR_2g436380 38.983 118 60 4 214 331 1 106 1.31e-18 85.5
MS.gene004588.t1 MTR_4g084630 22.591 301 215 8 66 355 31 324 8.10e-13 69.3
MS.gene004588.t1 MTR_8g012210 20.486 288 222 5 87 369 63 348 2.92e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004588.t1 AT5G07900 32.283 381 227 7 18 368 20 399 1.26e-59 199
MS.gene004588.t1 AT1G21150 30.746 335 226 3 43 371 55 389 3.33e-49 171
MS.gene004588.t1 AT1G21150 30.746 335 226 3 43 371 119 453 1.20e-48 171
MS.gene004588.t1 AT1G21150 30.060 336 229 3 42 371 18 353 1.02e-47 166
MS.gene004588.t1 AT1G61980 29.745 353 207 6 41 354 49 399 6.27e-39 144
MS.gene004588.t1 AT1G61980 29.745 353 207 6 41 354 49 399 6.27e-39 144
MS.gene004588.t1 AT1G61980 29.745 353 207 6 41 354 49 399 6.27e-39 144
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61970 31.461 356 197 8 41 354 49 399 5.61e-38 141
MS.gene004588.t1 AT1G61990 27.750 400 229 8 13 359 7 399 9.44e-36 135
MS.gene004588.t1 AT1G61990 27.750 400 229 8 13 359 7 399 9.44e-36 135
MS.gene004588.t1 AT1G62120 27.855 359 208 7 41 354 53 405 1.28e-31 124
MS.gene004588.t1 AT3G46950 26.895 409 209 11 29 355 31 431 2.18e-31 124
MS.gene004588.t1 AT5G64950 27.928 333 217 7 55 369 49 376 9.55e-31 121
MS.gene004588.t1 AT1G61960 32.271 251 156 4 41 283 49 293 6.22e-30 120
MS.gene004588.t1 AT1G62085 33.735 249 150 4 44 283 55 297 6.56e-30 120
MS.gene004588.t1 AT1G62085 33.735 249 150 4 44 283 55 297 6.56e-30 120
MS.gene004588.t1 AT1G62110 32.520 246 159 3 44 284 52 295 2.18e-28 115
MS.gene004588.t1 AT1G62010 28.254 315 187 5 77 354 71 383 2.76e-25 106
MS.gene004588.t1 AT1G62150 29.528 254 164 4 39 283 53 300 5.19e-25 106
MS.gene004588.t1 AT5G23930 23.955 359 197 6 44 331 55 408 8.49e-21 94.0
MS.gene004588.t1 AT1G56380 27.083 240 138 4 45 284 17 219 1.20e-15 78.2
MS.gene004588.t1 AT1G56380 27.083 240 138 4 45 284 28 230 1.23e-15 78.2
MS.gene004588.t1 AT1G79220 23.203 306 215 9 87 380 91 388 2.85e-12 68.2

Find 68 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTATTCTGTAAAATTCT+AGG 0.190911 2.2:+52125583 None:intergenic
GTTAAGTTATTGATTGATTA+TGG 0.197960 2.2:-52125439 MS.gene004588:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.2:-52125158 MS.gene004588:CDS
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.2:-52125340 MS.gene004588:CDS
GACCCTTCAACTTCAACTTT+TGG 0.225478 2.2:-52125313 MS.gene004588:CDS
TGGAGGAAGTTAAGGGTTTA+GGG 0.238470 2.2:-52125339 MS.gene004588:CDS
ATTCTTCGGCACTTTCTAAA+AGG 0.266057 2.2:-52125102 MS.gene004588:CDS
AGATTATGAAGTCACCTATT+TGG 0.271993 2.2:+52124835 None:intergenic
TATGATAATGCTGCGTATAT+TGG 0.279072 2.2:+52125720 None:intergenic
TTGTGAATTTGTGAGAAAAT+TGG 0.315341 2.2:+52125899 None:intergenic
TAGTACTTTGGAGGAAGTTA+AGG 0.340131 2.2:-52125347 MS.gene004588:CDS
TGACATGCCATTCACCAAAT+AGG 0.363432 2.2:-52124849 None:intergenic
TTAGTTACAGTTTGCAGAAA+AGG 0.377592 2.2:-52125069 MS.gene004588:CDS
TGAACCGTTTGCTCCGTCTA+AGG 0.377750 2.2:-52124975 MS.gene004588:CDS
CTTTGGAAGAATTGAATTGT+GGG 0.379663 2.2:+52125669 None:intergenic
GATGTTATTCGTGCATTTAG+AGG 0.394249 2.2:-52125202 MS.gene004588:CDS
TTAACAAGACCAGCTATACT+TGG 0.394866 2.2:-52125385 MS.gene004588:CDS
AATTGATTTCCTTAGTACTT+TGG 0.395237 2.2:-52125359 MS.gene004588:CDS
TCAATTGGGTTGGAATTCTT+CGG 0.404558 2.2:-52125116 MS.gene004588:CDS
AGTACTTTGGAGGAAGTTAA+GGG 0.430815 2.2:-52125346 MS.gene004588:CDS
GAAGTCACCTATTTGGTGAA+TGG 0.443693 2.2:+52124842 None:intergenic
ATGTATGACTACAACACTTT+GGG 0.444319 2.2:-52125269 MS.gene004588:CDS
TTCACTTTCTTCACAAACCT+TGG 0.449075 2.2:-52125754 MS.gene004588:CDS
CTGCAATTTCTTGTGATGAA+AGG 0.454596 2.2:-52125025 MS.gene004588:CDS
GAAAATTGGAATGGGAAAAG+AGG 0.458654 2.2:+52125913 None:intergenic
AATGTATGACTACAACACTT+TGG 0.465635 2.2:-52125270 MS.gene004588:CDS
AACTGAGAACATATTTGCTT+AGG 0.466357 2.2:+52124945 None:intergenic
TTATTTATTAAAGCTTTATG+AGG 0.468070 2.2:-52124906 MS.gene004588:CDS
GACGGTGAATGAGTCTGATT+CGG 0.469111 2.2:+52125873 None:intergenic
TTAACAGTAGTAAGATTGTA+AGG 0.474106 2.2:+52125463 None:intergenic
CATGTCAATGTTCTCCTTGG+TGG 0.478386 2.2:+52124865 None:intergenic
TTCTTGTGATGAAAGGTTTG+AGG 0.479601 2.2:-52125018 MS.gene004588:CDS
AAGGATTGTTCCAAGGGCAT+TGG 0.488885 2.2:-52125050 MS.gene004588:CDS
AGGGGTTGATAATGATTTGT+GGG 0.489513 2.2:+52125933 None:intergenic
AAAATTGGAATGGGAAAAGA+GGG 0.492732 2.2:+52125914 None:intergenic
TCAATTGATCCAAGTATAGC+TGG 0.498779 2.2:+52125376 None:intergenic
TGATTTCCTTAGTACTTTGG+AGG 0.499163 2.2:-52125356 MS.gene004588:CDS
CTTAGGAACATTTCCTTAGA+CGG 0.503257 2.2:+52124962 None:intergenic
ATTTGTGAGAAAATTGGAAT+GGG 0.511420 2.2:+52125905 None:intergenic
ATTGAAGTCAACAACAAGTC+AGG 0.516236 2.2:+52125175 None:intergenic
TAACTTCCTCCAAAGTACTA+AGG 0.517307 2.2:+52125350 None:intergenic
ACTTTGGAAGAATTGAATTG+TGG 0.522321 2.2:+52125668 None:intergenic
AATTGAATTGTGGGTATCTG+AGG 0.523687 2.2:+52125678 None:intergenic
TCTTACCTCATCAACACCAT+TGG 0.525270 2.2:-52125850 MS.gene004588:CDS
ATTTCCTTAGACGGAGCAAA+CGG 0.526804 2.2:+52124971 None:intergenic
TTTGGGTTAATCAATTGGGT+TGG 0.527975 2.2:-52125126 MS.gene004588:CDS
AGCAAACGGTTCAACTAAGC+TGG 0.533205 2.2:+52124985 None:intergenic
GACCCAAAAGTTGAAGTTGA+AGG 0.537017 2.2:+52125310 None:intergenic
AATTGCAGAACCAATGCCCT+TGG 0.540852 2.2:+52125040 None:intergenic
TGCAGAAAAGGATTGTTCCA+AGG 0.541911 2.2:-52125057 MS.gene004588:CDS
GCAGAAAAGGATTGTTCCAA+GGG 0.547363 2.2:-52125056 MS.gene004588:CDS
TGGCATGTCAATGTTCTCCT+TGG 0.547892 2.2:+52124862 None:intergenic
TGTGGGTATCTGAGGAAAGA+AGG 0.549747 2.2:+52125686 None:intergenic
GAGGGGTTGATAATGATTTG+TGG 0.557658 2.2:+52125932 None:intergenic
AATTTGTGAGAAAATTGGAA+TGG 0.566174 2.2:+52125904 None:intergenic
ACCCAAAAGTTGAAGTTGAA+GGG 0.582729 2.2:+52125311 None:intergenic
GCTTTGAGAGCTGTTTCACG+AGG 0.585622 2.2:+52125823 None:intergenic
TAAAAGCAATCTAGCAATAG+CGG 0.619754 2.2:+52125405 None:intergenic
GGAAACCAATGGTGTTGATG+AGG 0.626364 2.2:+52125845 None:intergenic
GGGGTTGATAATGATTTGTG+GGG 0.635107 2.2:+52125934 None:intergenic
CTTTGAGAGCTGTTTCACGA+GGG 0.649493 2.2:+52125824 None:intergenic
CGTAAATCTTGCATCCACCA+AGG 0.669439 2.2:-52124879 MS.gene004588:CDS
AAGTCAACAACAAGTCAGGA+CGG 0.683442 2.2:+52125179 None:intergenic
TGTTTCACGAGGGAAACCAA+TGG 0.686052 2.2:+52125834 None:intergenic
GGGTTGATAATGATTTGTGG+GGG 0.690462 2.2:+52125935 None:intergenic
GTATCTGAGGAAAGAAGGCG+TGG 0.697130 2.2:+52125691 None:intergenic
GGTGTTGATGAGGTAAGAGA+CGG 0.746081 2.2:+52125855 None:intergenic
AAATTGGAATGGGAAAAGAG+GGG 0.746709 2.2:+52125915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTGATAAGATTAATT+TGG - chr2.2:52125683-52125702 MS.gene004588:CDS 15.0%
!!! TTATTTATTAAAGCTTTATG+AGG - chr2.2:52125935-52125954 MS.gene004588:CDS 15.0%
!!! TTTCAATTTTTTCTATCTAA+AGG - chr2.2:52125195-52125214 MS.gene004588:CDS 15.0%
!! AAACTATTCTGTAAAATTCT+AGG + chr2.2:52125261-52125280 None:intergenic 20.0%
!! AAACTGTAACTAAAAATACA+TGG + chr2.2:52125765-52125784 None:intergenic 20.0%
!! AAGAAAGTGAAAAATGAATT+GGG + chr2.2:52125078-52125097 None:intergenic 20.0%
!! CTCTTATAAAATTCAAAAAG+AGG + chr2.2:52125300-52125319 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+TGG + chr2.2:52125192-52125211 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.2:52125601-52125620 MS.gene004588:CDS 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.2:52125602-52125621 MS.gene004588:CDS 20.0%
!!! CTCTTTTTGAATTTTATAAG+AGG - chr2.2:52125298-52125317 MS.gene004588:CDS 20.0%
!!! GTTAAGTTATTGATTGATTA+TGG - chr2.2:52125402-52125421 MS.gene004588:CDS 20.0%
!!! TAGAATTTTACAGAATAGTT+TGG - chr2.2:52125260-52125279 MS.gene004588:CDS 20.0%
! AATTTGTGAGAAAATTGGAA+TGG + chr2.2:52124940-52124959 None:intergenic 25.0%
! ATTTGTGAGAAAATTGGAAT+GGG + chr2.2:52124939-52124958 None:intergenic 25.0%
! GAAGAAAGTGAAAAATGAAT+TGG + chr2.2:52125079-52125098 None:intergenic 25.0%
! TTAACAGTAGTAAGATTGTA+AGG + chr2.2:52125381-52125400 None:intergenic 25.0%
! TTGTGAATTTGTGAGAAAAT+TGG + chr2.2:52124945-52124964 None:intergenic 25.0%
!! AAAAATGAATTGGGTTTTTG+TGG + chr2.2:52125069-52125088 None:intergenic 25.0%
!! AATTGATTTCCTTAGTACTT+TGG - chr2.2:52125482-52125501 MS.gene004588:CDS 25.0%
!! CAAATATGTTCTCAGTTTTA+AGG - chr2.2:52125902-52125921 MS.gene004588:CDS 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.2:52125711-52125730 MS.gene004588:CDS 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.2:52125603-52125622 MS.gene004588:CDS 25.0%
!!! TAATTTGGTGTTGAGTTTTT+GGG - chr2.2:52125698-52125717 MS.gene004588:CDS 25.0%
!!! TTAATTTGGTGTTGAGTTTT+TGG - chr2.2:52125697-52125716 MS.gene004588:CDS 25.0%
AAAATTGGAATGGGAAAAGA+GGG + chr2.2:52124930-52124949 None:intergenic 30.0%
AACTGAGAACATATTTGCTT+AGG + chr2.2:52125899-52125918 None:intergenic 30.0%
AATGTATGACTACAACACTT+TGG - chr2.2:52125571-52125590 MS.gene004588:CDS 30.0%
ATGTATGACTACAACACTTT+GGG - chr2.2:52125572-52125591 MS.gene004588:CDS 30.0%
TAAAAGCAATCTAGCAATAG+CGG + chr2.2:52125439-52125458 None:intergenic 30.0%
TATTGGAATCTGAAAAACCA+AGG + chr2.2:52125107-52125126 None:intergenic 30.0%
TTAGTTACAGTTTGCAGAAA+AGG - chr2.2:52125772-52125791 MS.gene004588:CDS 30.0%
! ACTTTGGAAGAATTGAATTG+TGG + chr2.2:52125176-52125195 None:intergenic 30.0%
! CTTTGGAAGAATTGAATTGT+GGG + chr2.2:52125175-52125194 None:intergenic 30.0%
! TATGATAATGCTGCGTATAT+TGG + chr2.2:52125124-52125143 None:intergenic 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.2:52125607-52125626 MS.gene004588:CDS 30.0%
!!! ATATGTTCTCAGTTTTAAGG+AGG - chr2.2:52125905-52125924 MS.gene004588:CDS 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.2:52125710-52125729 MS.gene004588:CDS 30.0%
AAATTGGAATGGGAAAAGAG+GGG + chr2.2:52124929-52124948 None:intergenic 35.0%
AATTGAATTGTGGGTATCTG+AGG + chr2.2:52125166-52125185 None:intergenic 35.0%
ACCCAAAAGTTGAAGTTGAA+GGG + chr2.2:52125533-52125552 None:intergenic 35.0%
ATTCTTCGGCACTTTCTAAA+AGG - chr2.2:52125739-52125758 MS.gene004588:CDS 35.0%
ATTGAAGTCAACAACAAGTC+AGG + chr2.2:52125669-52125688 None:intergenic 35.0%
CTGCAATTTCTTGTGATGAA+AGG - chr2.2:52125816-52125835 MS.gene004588:CDS 35.0%
CTTAGGAACATTTCCTTAGA+CGG + chr2.2:52125882-52125901 None:intergenic 35.0%
GAAAATTGGAATGGGAAAAG+AGG + chr2.2:52124931-52124950 None:intergenic 35.0%
GATGTTATTCGTGCATTTAG+AGG - chr2.2:52125639-52125658 MS.gene004588:CDS 35.0%
TCAATTGATCCAAGTATAGC+TGG + chr2.2:52125468-52125487 None:intergenic 35.0%
TGATTTCCTTAGTACTTTGG+AGG - chr2.2:52125485-52125504 MS.gene004588:CDS 35.0%
TTAACAAGACCAGCTATACT+TGG - chr2.2:52125456-52125475 MS.gene004588:CDS 35.0%
TTCACTTTCTTCACAAACCT+TGG - chr2.2:52125087-52125106 MS.gene004588:CDS 35.0%
TTCTTGTGATGAAAGGTTTG+AGG - chr2.2:52125823-52125842 MS.gene004588:CDS 35.0%
! ACCCTTCAACTTCAACTTTT+GGG - chr2.2:52125529-52125548 MS.gene004588:CDS 35.0%
! AGTACTTTGGAGGAAGTTAA+GGG - chr2.2:52125495-52125514 MS.gene004588:CDS 35.0%
! TAACTTCCTCCAAAGTACTA+AGG + chr2.2:52125494-52125513 None:intergenic 35.0%
! TAGTACTTTGGAGGAAGTTA+AGG - chr2.2:52125494-52125513 MS.gene004588:CDS 35.0%
! TTTGGGTTAATCAATTGGGT+TGG - chr2.2:52125715-52125734 MS.gene004588:CDS 35.0%
!! AGGGGTTGATAATGATTTGT+GGG + chr2.2:52124911-52124930 None:intergenic 35.0%
!! TCAATTGGGTTGGAATTCTT+CGG - chr2.2:52125725-52125744 MS.gene004588:CDS 35.0%
AAGTCAACAACAAGTCAGGA+CGG + chr2.2:52125665-52125684 None:intergenic 40.0%
ATTTCCTTAGACGGAGCAAA+CGG + chr2.2:52125873-52125892 None:intergenic 40.0%
GACCCAAAAGTTGAAGTTGA+AGG + chr2.2:52125534-52125553 None:intergenic 40.0%
GCAGAAAAGGATTGTTCCAA+GGG - chr2.2:52125785-52125804 MS.gene004588:CDS 40.0%
TCTTACCTCATCAACACCAT+TGG - chr2.2:52124991-52125010 MS.gene004588:CDS 40.0%
TGCAGAAAAGGATTGTTCCA+AGG - chr2.2:52125784-52125803 MS.gene004588:CDS 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.2:52125502-52125521 MS.gene004588:CDS 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.2:52125501-52125520 MS.gene004588:CDS 40.0%
! GACCCTTCAACTTCAACTTT+TGG - chr2.2:52125528-52125547 MS.gene004588:CDS 40.0%
!! GAGGGGTTGATAATGATTTG+TGG + chr2.2:52124912-52124931 None:intergenic 40.0%
!! GGGGTTGATAATGATTTGTG+GGG + chr2.2:52124910-52124929 None:intergenic 40.0%
!! GGGTTGATAATGATTTGTGG+GGG + chr2.2:52124909-52124928 None:intergenic 40.0%
!! TTCAACTTTTGGGTCAGCTT+TGG - chr2.2:52125539-52125558 MS.gene004588:CDS 40.0%
AATTGCAGAACCAATGCCCT+TGG + chr2.2:52125804-52125823 None:intergenic 45.0%
AGCAAACGGTTCAACTAAGC+TGG + chr2.2:52125859-52125878 None:intergenic 45.0%
CATGTCAATGTTCTCCTTGG+TGG + chr2.2:52125979-52125998 None:intergenic 45.0%
CGTAAATCTTGCATCCACCA+AGG - chr2.2:52125962-52125981 MS.gene004588:CDS 45.0%
GACGGTGAATGAGTCTGATT+CGG + chr2.2:52124971-52124990 None:intergenic 45.0%
TGGCATGTCAATGTTCTCCT+TGG + chr2.2:52125982-52126001 None:intergenic 45.0%
TGTGGGTATCTGAGGAAAGA+AGG + chr2.2:52125158-52125177 None:intergenic 45.0%
TGTTTCACGAGGGAAACCAA+TGG + chr2.2:52125010-52125029 None:intergenic 45.0%
! AAGGATTGTTCCAAGGGCAT+TGG - chr2.2:52125791-52125810 MS.gene004588:CDS 45.0%
! CTTTGAGAGCTGTTTCACGA+GGG + chr2.2:52125020-52125039 None:intergenic 45.0%
!! GGAAACCAATGGTGTTGATG+AGG + chr2.2:52124999-52125018 None:intergenic 45.0%
!! GGTGTTGATGAGGTAAGAGA+CGG + chr2.2:52124989-52125008 None:intergenic 45.0%
GTATCTGAGGAAAGAAGGCG+TGG + chr2.2:52125153-52125172 None:intergenic 50.0%
TGAACCGTTTGCTCCGTCTA+AGG - chr2.2:52125866-52125885 MS.gene004588:CDS 50.0%
!! GCTTTGAGAGCTGTTTCACG+AGG + chr2.2:52125021-52125040 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 52124850 52126013 52124850 ID=MS.gene004588
chr2.2 mRNA 52124850 52126013 52124850 ID=MS.gene004588.t1;Parent=MS.gene004588
chr2.2 exon 52124850 52126013 52124850 ID=MS.gene004588.t1.exon1;Parent=MS.gene004588.t1
chr2.2 CDS 52124850 52126013 52124850 ID=cds.MS.gene004588.t1;Parent=MS.gene004588.t1
Gene Sequence

>MS.gene004588

ATGGCAATGCTTCGTTACATTATCTTCAATTACAATCATTGCAGAGCAATTATTATCCCCCACAAATCATTATCAACCCCTCTTTTCCCATTCCAATTTTCTCACAAATTCACAACTTCCGAATCAGACTCATTCACCGTCTCTTACCTCATCAACACCATTGGTTTCCCTCGTGAAACAGCTCTCAAAGCTTCAAAACGACTTCGTTTCAACTCTCCACAAAAACCCAATTCATTTTTCACTTTCTTCACAAACCTTGGTTTTTCAGATTCCAATATACGCAGCATTATCATAAAACAACCACGCCTTCTTTCCTCAGATACCCACAATTCAATTCTTCCAAAGTTTCAATTTTTTCTATCTAAAGGTGCTTCAGCTTCTGAAATCGCGTGTTTGTTAGCAGCGAATCCTAGAATTTTACAGAATAGTTTGGAGAATAGAATAATTCCTCTTTTTGAATTTTATAAGAGGTTTTTTAAATCTGATAAAGCTACAATTTGTTGCATCATTCGAAATTTGATATCTTTGCCTTACAATCTTACTACTGTTAATGTTAAGTTATTGATTGATTATGGAGTTTGTGATTCCGCTATTGCTAGATTGCTTTTAACAAGACCAGCTATACTTGGATCAATTGATTTCCTTAGTACTTTGGAGGAAGTTAAGGGTTTAGGGTTTGACCCTTCAACTTCAACTTTTGGGTCAGCTTTGGTTGCAAAGAAATGTATGACTACAACACTTTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGTGCATTTAGAGGCCGTCCTGACTTGTTGTTGACTTCAATTGATAAGATTAATTTGGTGTTGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCTTCGGCACTTTCTAAAAGGCCATGTATTTTTAGTTACAGTTTGCAGAAAAGGATTGTTCCAAGGGCATTGGTTCTGCAATTTCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCCAGCTTAGTTGAACCGTTTGCTCCGTCTAAGGAAATGTTCCTAAGCAAATATGTTCTCAGTTTTAAGGAGGATTCTGATTATTTATTAAAGCTTTATGAGGAAAACGTAAATCTTGCATCCACCAAGGAGAACATTGACATGCCATTCACCAAATAG
Protein sequence

>MS.gene004588.t1

MAMLRYIIFNYNHCRAIIIPHKSLSTPLFPFQFSHKFTTSESDSFTVSYLINTIGFPRETALKASKRLRFNSPQKPNSFFTFFTNLGFSDSNIRSIIIKQPRLLSSDTHNSILPKFQFFLSKGASASEIACLLAANPRILQNSLENRIIPLFEFYKRFFKSDKATICCIIRNLISLPYNLTTVNVKLLIDYGVCDSAIARLLLTRPAILGSIDFLSTLEEVKGLGFDPSTSTFGSALVAKKCMTTTLWDEKVDVFKKWGWSDEDVIRAFRGRPDLLLTSIDKINLVLSFWVNQLGWNSSALSKRPCIFSYSLQKRIVPRALVLQFLVMKGLRKKNASLVEPFAPSKEMFLSKYVLSFKEDSDYLLKLYEENVNLASTKENIDMPFTK