AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52431

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52431.t1 MTR_2g437130 92.982 342 20 2 1 340 1 340 0.0 644
MS.gene52431.t1 MTR_2g437200 58.592 355 109 2 23 339 12 366 2.14e-140 404
MS.gene52431.t1 MTR_2g437120 62.382 319 111 5 28 339 35 351 7.78e-132 382
MS.gene52431.t1 MTR_2g437150 60.360 333 114 5 25 339 26 358 9.74e-132 382
MS.gene52431.t1 MTR_2g076320 60.870 322 116 4 29 340 31 352 2.48e-130 378
MS.gene52431.t1 MTR_2g437170 59.760 333 116 5 25 339 26 358 4.68e-130 378
MS.gene52431.t1 MTR_2g437990 60.436 321 118 4 29 340 31 351 4.52e-129 376
MS.gene52431.t1 MTR_2g437160 58.934 319 125 3 27 339 45 363 6.19e-129 375
MS.gene52431.t1 MTR_2g437960 61.000 300 112 2 45 339 55 354 2.33e-127 371
MS.gene52431.t1 MTR_2g437960 61.000 300 112 2 45 339 55 354 5.05e-127 371
MS.gene52431.t1 MTR_2g438010 58.974 312 119 3 38 340 61 372 6.43e-125 365
MS.gene52431.t1 MTR_2g437240 54.545 352 121 3 25 338 15 365 9.79e-124 362
MS.gene52431.t1 MTR_2g438020 54.464 336 115 2 42 339 70 405 3.25e-121 358
MS.gene52431.t1 MTR_2g437180 57.468 308 126 2 37 339 43 350 4.89e-120 352
MS.gene52431.t1 MTR_2g437100 56.269 327 127 4 29 339 37 363 4.68e-117 345
MS.gene52431.t1 MTR_2g437080 52.997 317 145 2 27 339 22 338 1.63e-112 332
MS.gene52431.t1 MTR_2g437940 54.747 316 109 4 29 339 36 322 2.61e-111 329
MS.gene52431.t1 MTR_2g437020 53.651 315 140 3 29 339 27 339 3.61e-108 321
MS.gene52431.t1 MTR_2g437060 51.250 320 149 3 27 339 34 353 9.03e-104 310
MS.gene52431.t1 MTR_2g436440 49.565 345 160 5 8 339 1 344 1.39e-103 310
MS.gene52431.t1 MTR_2g437030 51.429 315 149 2 27 339 112 424 1.94e-103 312
MS.gene52431.t1 MTR_2g436400 47.278 349 153 6 11 339 8 345 6.55e-102 305
MS.gene52431.t1 MTR_2g437260 48.845 303 153 1 39 339 32 334 8.38e-102 305
MS.gene52431.t1 MTR_2g437040 48.113 318 161 2 26 339 21 338 1.25e-99 299
MS.gene52431.t1 MTR_4g119550 51.495 301 145 1 39 338 47 347 3.68e-97 293
MS.gene52431.t1 MTR_2g436460 50.163 307 151 2 34 338 37 343 2.60e-94 286
MS.gene52431.t1 MTR_4g120380 45.122 328 166 2 14 339 25 340 7.20e-88 269
MS.gene52431.t1 MTR_4g119580 46.395 319 167 2 20 338 25 339 1.89e-87 268
MS.gene52431.t1 MTR_4g120380 45.122 328 166 2 14 339 25 340 7.67e-87 268
MS.gene52431.t1 MTR_2g019810 42.675 314 177 2 22 333 10 322 2.32e-73 231
MS.gene52431.t1 MTR_2g019840 41.946 298 170 2 38 333 38 334 8.72e-72 228
MS.gene52431.t1 MTR_2g437160 70.714 140 41 0 200 339 133 272 8.89e-69 218
MS.gene52431.t1 MTR_2g437090 56.452 124 54 0 215 338 2 125 2.28e-46 155
MS.gene52431.t1 MTR_4g007490 32.448 339 214 7 3 333 1 332 3.86e-45 158
MS.gene52431.t1 MTR_3g450500 29.714 350 231 4 3 343 1 344 1.39e-44 157
MS.gene52431.t1 MTR_4g119570 36.530 219 106 1 121 339 14 199 4.82e-39 138
MS.gene52431.t1 MTR_2g436370 44.670 197 93 6 8 190 1 195 2.43e-37 133
MS.gene52431.t1 MTR_8g081000 26.822 343 240 4 1 339 20 355 1.24e-29 117
MS.gene52431.t1 MTR_8g081000 26.822 343 240 4 1 339 20 355 1.63e-29 117
MS.gene52431.t1 MTR_8g081000 26.822 343 240 4 1 339 20 355 2.40e-29 117
MS.gene52431.t1 MTR_8g080990 26.822 343 243 4 1 339 4 342 1.20e-28 114
MS.gene52431.t1 MTR_3g085240 37.838 185 98 4 25 205 35 206 3.32e-21 91.7
MS.gene52431.t1 MTR_3g085240 69.811 53 16 0 273 325 176 228 2.50e-18 83.6
MS.gene52431.t1 MTR_4g049400 44.882 127 62 3 21 141 26 150 4.15e-20 88.2
MS.gene52431.t1 MTR_2g436380 60.000 60 24 0 214 273 1 60 3.50e-19 86.7
MS.gene52431.t1 MTR_4g084630 22.222 270 198 7 66 324 31 299 5.59e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52431.t1 AT5G07900 32.402 358 211 7 18 345 20 376 1.05e-53 182
MS.gene52431.t1 AT1G21150 32.886 298 195 2 43 335 55 352 8.04e-48 166
MS.gene52431.t1 AT1G21150 32.886 298 195 2 43 335 119 416 4.31e-47 166
MS.gene52431.t1 AT1G21150 32.107 299 198 2 42 335 18 316 2.48e-46 161
MS.gene52431.t1 AT1G61980 30.091 329 190 5 41 331 49 375 3.34e-37 138
MS.gene52431.t1 AT1G61980 30.091 329 190 5 41 331 49 375 3.34e-37 138
MS.gene52431.t1 AT1G61980 30.091 329 190 5 41 331 49 375 3.34e-37 138
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61970 31.437 334 183 7 41 333 49 377 3.29e-36 135
MS.gene52431.t1 AT1G61990 27.926 376 214 7 13 338 7 375 7.98e-35 132
MS.gene52431.t1 AT1G61990 27.926 376 214 7 13 338 7 375 7.98e-35 132
MS.gene52431.t1 AT1G62120 28.614 332 187 6 44 331 56 381 1.21e-31 124
MS.gene52431.t1 AT3G46950 32.463 268 164 5 29 286 31 291 2.45e-31 123
MS.gene52431.t1 AT1G62085 34.800 250 146 6 44 283 55 297 9.42e-31 121
MS.gene52431.t1 AT1G62085 34.800 250 146 6 44 283 55 297 9.42e-31 121
MS.gene52431.t1 AT1G61960 32.271 251 156 4 41 283 49 293 3.60e-30 120
MS.gene52431.t1 AT1G62110 32.520 246 159 3 44 284 52 295 5.26e-29 116
MS.gene52431.t1 AT5G64950 27.832 309 203 7 32 326 26 328 8.43e-27 109
MS.gene52431.t1 AT1G62010 28.179 291 171 3 77 331 71 359 1.14e-25 107
MS.gene52431.t1 AT1G62150 29.528 254 164 4 39 283 53 300 2.13e-25 106
MS.gene52431.t1 AT5G23930 24.234 359 196 6 44 331 55 408 7.93e-21 93.6
MS.gene52431.t1 AT1G56380 27.197 239 137 4 45 283 28 229 8.62e-16 78.2
MS.gene52431.t1 AT1G56380 27.197 239 137 4 45 283 17 218 1.04e-15 77.8

Find 61 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTATTCTGTAAAATTCT+AGG 0.190911 2.3:+54400853 None:intergenic
GTTAAGTTATTGATTGATTA+TGG 0.197960 2.3:-54400709 MS.gene52431:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.3:-54400428 MS.gene52431:CDS
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.3:-54400610 MS.gene52431:CDS
GACCCTTCAACTTCAACTTT+TGG 0.225478 2.3:-54400583 MS.gene52431:CDS
TGGAGGAAGTTAAGGGTTTA+GGG 0.238470 2.3:-54400609 MS.gene52431:CDS
TTGTGAAATTGTGGGAAAAT+TGG 0.258467 2.3:+54401169 None:intergenic
TCAATTGGGTTGGAATTCTT+TGG 0.276844 2.3:-54400386 MS.gene52431:CDS
TATGATAATGCTGCGTATAT+TGG 0.279072 2.3:+54400990 None:intergenic
CGAACCGTTTGCTCCGTCTA+AGG 0.305851 2.3:-54400244 None:intergenic
TAGTACTTTGGAGGAAGTTA+AGG 0.340131 2.3:-54400617 MS.gene52431:CDS
TTCAGAAGCTGAAGCACCTT+TGG 0.362617 2.3:+54400900 None:intergenic
ATTGAAGTCAACAACAATTC+AGG 0.371659 2.3:+54400445 None:intergenic
TTAGTTACAGTTTGCAGAAA+AGG 0.377592 2.3:-54400339 MS.gene52431:CDS
GATGTTATTCGTGCATTTAG+AGG 0.388931 2.3:-54400472 MS.gene52431:CDS
ATTCTTTGGCACTTTCTAGA+AGG 0.391954 2.3:-54400372 MS.gene52431:CDS
TTGACAAGACCAGCTATACT+TGG 0.394866 2.3:-54400655 MS.gene52431:CDS
AATTGATTTCCTTAGTACTT+TGG 0.395237 2.3:-54400629 MS.gene52431:CDS
ATGTATGACTAAAACACTTT+GGG 0.428463 2.3:-54400539 MS.gene52431:CDS
AGTACTTTGGAGGAAGTTAA+GGG 0.430815 2.3:-54400616 MS.gene52431:CDS
CTTCGGAAGAATTGAATTGT+GGG 0.438443 2.3:+54400939 None:intergenic
GAAAATTGGAATGGGAAAAG+AGG 0.449045 2.3:+54401183 None:intergenic
TTCACTTTCTTCACAAACCT+TGG 0.449075 2.3:-54401024 MS.gene52431:CDS
CTGCAATTTCTTGTGATGAA+AGG 0.454596 2.3:-54400295 MS.gene52431:CDS
AATGTATGACTAAAACACTT+TGG 0.458815 2.3:-54400540 MS.gene52431:CDS
GACGGTGAATGAGTCTGATT+CGG 0.469111 2.3:+54401143 None:intergenic
TTAACAGTAGTAAGATTGTA+AGG 0.474106 2.3:+54400733 None:intergenic
TTCTTGTGATGAAAGGTTTG+AGG 0.479601 2.3:-54400288 MS.gene52431:CDS
AAGGATTGTTCCAAGGGCAT+TGG 0.488885 2.3:-54400320 MS.gene52431:CDS
AGGGGTTGATAATGATTTGT+GGG 0.489513 2.3:+54401203 None:intergenic
TCAATTGATCCAAGTATAGC+TGG 0.498779 2.3:+54400646 None:intergenic
TGATTTCCTTAGTACTTTGG+AGG 0.499163 2.3:-54400626 MS.gene52431:CDS
CTTAGGAACATTTCCTTAGA+CGG 0.503257 2.3:+54400231 None:intergenic
ACTTCGGAAGAATTGAATTG+TGG 0.515752 2.3:+54400938 None:intergenic
TAACTTCCTCCAAAGTACTA+AGG 0.517307 2.3:+54400620 None:intergenic
AATTGAATTGTGGGTATCTG+AGG 0.523687 2.3:+54400948 None:intergenic
TCTTACCTCATCAACACCAT+TGG 0.525270 2.3:-54401120 MS.gene52431:CDS
ATTTCCTTAGACGGAGCAAA+CGG 0.526804 2.3:+54400240 None:intergenic
TTTGGGTTAATCAATTGGGT+TGG 0.527975 2.3:-54400396 MS.gene52431:CDS
AAAATTGGAATGGGAAAAGA+GGG 0.528349 2.3:+54401184 None:intergenic
GACCCAAAAGTTGAAGTTGA+AGG 0.537017 2.3:+54400580 None:intergenic
AATTGCAGAACCAATGCCCT+TGG 0.540852 2.3:+54400310 None:intergenic
TGCAGAAAAGGATTGTTCCA+AGG 0.541911 2.3:-54400327 MS.gene52431:CDS
GCAGAAAAGGATTGTTCCAA+GGG 0.547363 2.3:-54400326 MS.gene52431:CDS
TGTGGGTATCTGAGGAAAGA+AGG 0.549747 2.3:+54400956 None:intergenic
TTCGGAAGTTGTGAAATTGT+GGG 0.551950 2.3:+54401161 None:intergenic
GAGGGGTTGATAATGATTTG+TGG 0.557658 2.3:+54401202 None:intergenic
ATTCGGAAGTTGTGAAATTG+TGG 0.569983 2.3:+54401160 None:intergenic
AATTGTGGGAAAATTGGAAT+GGG 0.580969 2.3:+54401175 None:intergenic
ACCCAAAAGTTGAAGTTGAA+GGG 0.582729 2.3:+54400581 None:intergenic
GCTTTGAGAGCTGTTTCACG+AGG 0.585622 2.3:+54401093 None:intergenic
CAAAAGCAATCTAGCAATAG+CGG 0.586332 2.3:+54400675 None:intergenic
AAATTGTGGGAAAATTGGAA+TGG 0.593165 2.3:+54401174 None:intergenic
GGAAACCAATGGTGTTGATG+AGG 0.626364 2.3:+54401115 None:intergenic
GGGGTTGATAATGATTTGTG+GGG 0.635107 2.3:+54401204 None:intergenic
CTTTGAGAGCTGTTTCACGA+GGG 0.649493 2.3:+54401094 None:intergenic
TGTTTCACGAGGGAAACCAA+TGG 0.686052 2.3:+54401104 None:intergenic
GGGTTGATAATGATTTGTGG+GGG 0.690462 2.3:+54401205 None:intergenic
GTATCTGAGGAAAGAAGGCG+TGG 0.697130 2.3:+54400961 None:intergenic
GGTGTTGATGAGGTAAGAGA+CGG 0.746081 2.3:+54401125 None:intergenic
AAATTGGAATGGGAAAAGAG+GGG 0.766149 2.3:+54401185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTGATAAGATTAATT+TGG - chr2.3:54401079-54401098 MS.gene52431:CDS 15.0%
!! AAACTATTCTGTAAAATTCT+AGG + chr2.3:54400657-54400676 None:intergenic 20.0%
!! AAGAAAGTGAAAAATGAATT+GGG + chr2.3:54400474-54400493 None:intergenic 20.0%
!! CTCTTATAAAATTCAAAAAG+AGG + chr2.3:54400696-54400715 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+CGG + chr2.3:54400588-54400607 None:intergenic 20.0%
!!! AAGTTGATGTTTTTAAGAAA+TGG - chr2.3:54400997-54401016 MS.gene52431:CDS 20.0%
!!! AGTTGATGTTTTTAAGAAAT+GGG - chr2.3:54400998-54401017 MS.gene52431:CDS 20.0%
!!! CTCTTTTTGAATTTTATAAG+AGG - chr2.3:54400694-54400713 MS.gene52431:CDS 20.0%
!!! GTTAAGTTATTGATTGATTA+TGG - chr2.3:54400798-54400817 MS.gene52431:CDS 20.0%
!!! TAGAATTTTACAGAATAGTT+TGG - chr2.3:54400656-54400675 MS.gene52431:CDS 20.0%
!!! TTTCAATTTTTTCTATCCAA+AGG - chr2.3:54400591-54400610 MS.gene52431:CDS 20.0%
! AAACTGTAACTAAAAATACG+TGG + chr2.3:54401161-54401180 None:intergenic 25.0%
! AATGTATGACTAAAACACTT+TGG - chr2.3:54400967-54400986 MS.gene52431:CDS 25.0%
! ATGTATGACTAAAACACTTT+GGG - chr2.3:54400968-54400987 MS.gene52431:CDS 25.0%
! GAAGAAAGTGAAAAATGAAT+TGG + chr2.3:54400475-54400494 None:intergenic 25.0%
! TTAACAGTAGTAAGATTGTA+AGG + chr2.3:54400777-54400796 None:intergenic 25.0%
!! AATTGATTTCCTTAGTACTT+TGG - chr2.3:54400878-54400897 MS.gene52431:CDS 25.0%
!!! AGTTTTTGGGTTAATCAATT+GGG - chr2.3:54401107-54401126 MS.gene52431:CDS 25.0%
!!! GTTGATGTTTTTAAGAAATG+GGG - chr2.3:54400999-54401018 MS.gene52431:CDS 25.0%
!!! TAATTTGGTGTTGAGTTTTT+GGG - chr2.3:54401094-54401113 MS.gene52431:CDS 25.0%
!!! TTAATTTGGTGTTGAGTTTT+TGG - chr2.3:54401093-54401112 MS.gene52431:CDS 25.0%
AAAATTGGAATGGGAAAAGA+GGG + chr2.3:54400326-54400345 None:intergenic 30.0%
AAATTGTGGGAAAATTGGAA+TGG + chr2.3:54400336-54400355 None:intergenic 30.0%
AATTGTGGGAAAATTGGAAT+GGG + chr2.3:54400335-54400354 None:intergenic 30.0%
ATTGAAGTCAACAACAATTC+AGG + chr2.3:54401065-54401084 None:intergenic 30.0%
TATTGGAATCTGAAAAACCA+AGG + chr2.3:54400503-54400522 None:intergenic 30.0%
TTAGTTACAGTTTGCAGAAA+AGG - chr2.3:54401168-54401187 MS.gene52431:CDS 30.0%
TTGTGAAATTGTGGGAAAAT+TGG + chr2.3:54400341-54400360 None:intergenic 30.0%
! AAAAATGAATTGGGCTTTTG+TGG + chr2.3:54400465-54400484 None:intergenic 30.0%
! TATGATAATGCTGCGTATAT+TGG + chr2.3:54400520-54400539 None:intergenic 30.0%
!! ATGTTTTTAAGAAATGGGGT+TGG - chr2.3:54401003-54401022 MS.gene52431:CDS 30.0%
!!! GAGTTTTTGGGTTAATCAAT+TGG - chr2.3:54401106-54401125 MS.gene52431:CDS 30.0%
AAATTGGAATGGGAAAAGAG+GGG + chr2.3:54400325-54400344 None:intergenic 35.0%
AATTGAATTGTGGGTATCTG+AGG + chr2.3:54400562-54400581 None:intergenic 35.0%
ACCCAAAAGTTGAAGTTGAA+GGG + chr2.3:54400929-54400948 None:intergenic 35.0%
ACTTCGGAAGAATTGAATTG+TGG + chr2.3:54400572-54400591 None:intergenic 35.0%
ATTCGGAAGTTGTGAAATTG+TGG + chr2.3:54400350-54400369 None:intergenic 35.0%
ATTCTTTGGCACTTTCTAGA+AGG - chr2.3:54401135-54401154 MS.gene52431:CDS 35.0%
CAAAAGCAATCTAGCAATAG+CGG + chr2.3:54400835-54400854 None:intergenic 35.0%
CTGCAATTTCTTGTGATGAA+AGG - chr2.3:54401212-54401231 MS.gene52431:CDS 35.0%
CTTCGGAAGAATTGAATTGT+GGG + chr2.3:54400571-54400590 None:intergenic 35.0%
GAAAATTGGAATGGGAAAAG+AGG + chr2.3:54400327-54400346 None:intergenic 35.0%
GATGTTATTCGTGCATTTAG+AGG - chr2.3:54401035-54401054 MS.gene52431:CDS 35.0%
TCAATTGATCCAAGTATAGC+TGG + chr2.3:54400864-54400883 None:intergenic 35.0%
TGATTTCCTTAGTACTTTGG+AGG - chr2.3:54400881-54400900 MS.gene52431:CDS 35.0%
TTCACTTTCTTCACAAACCT+TGG - chr2.3:54400483-54400502 MS.gene52431:CDS 35.0%
TTCGGAAGTTGTGAAATTGT+GGG + chr2.3:54400349-54400368 None:intergenic 35.0%
TTCTTGTGATGAAAGGTTTG+AGG - chr2.3:54401219-54401238 MS.gene52431:CDS 35.0%
! ACCCTTCAACTTCAACTTTT+GGG - chr2.3:54400925-54400944 MS.gene52431:CDS 35.0%
! AGTACTTTGGAGGAAGTTAA+GGG - chr2.3:54400891-54400910 MS.gene52431:CDS 35.0%
! TAACTTCCTCCAAAGTACTA+AGG + chr2.3:54400890-54400909 None:intergenic 35.0%
! TAGTACTTTGGAGGAAGTTA+AGG - chr2.3:54400890-54400909 MS.gene52431:CDS 35.0%
! TTTGGGTTAATCAATTGGGT+TGG - chr2.3:54401111-54401130 MS.gene52431:CDS 35.0%
!! AGGGGTTGATAATGATTTGT+GGG + chr2.3:54400307-54400326 None:intergenic 35.0%
!! TCAATTGGGTTGGAATTCTT+TGG - chr2.3:54401121-54401140 MS.gene52431:CDS 35.0%
GACCCAAAAGTTGAAGTTGA+AGG + chr2.3:54400930-54400949 None:intergenic 40.0%
GCAGAAAAGGATTGTTCCAA+GGG - chr2.3:54401181-54401200 MS.gene52431:CDS 40.0%
TCTTACCTCATCAACACCAT+TGG - chr2.3:54400387-54400406 MS.gene52431:CDS 40.0%
TGCAGAAAAGGATTGTTCCA+AGG - chr2.3:54401180-54401199 MS.gene52431:CDS 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.3:54400898-54400917 MS.gene52431:CDS 40.0%
TTGACAAGACCAGCTATACT+TGG - chr2.3:54400852-54400871 MS.gene52431:CDS 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.3:54400897-54400916 MS.gene52431:CDS 40.0%
! GACCCTTCAACTTCAACTTT+TGG - chr2.3:54400924-54400943 MS.gene52431:CDS 40.0%
!! GAGGGGTTGATAATGATTTG+TGG + chr2.3:54400308-54400327 None:intergenic 40.0%
!! GGGGTTGATAATGATTTGTG+GGG + chr2.3:54400306-54400325 None:intergenic 40.0%
!! GGGTTGATAATGATTTGTGG+GGG + chr2.3:54400305-54400324 None:intergenic 40.0%
!! TTCAACTTTTGGGTCAGCTT+TGG - chr2.3:54400935-54400954 MS.gene52431:CDS 40.0%
AATTGCAGAACCAATGCCCT+TGG + chr2.3:54401200-54401219 None:intergenic 45.0%
GACGGTGAATGAGTCTGATT+CGG + chr2.3:54400367-54400386 None:intergenic 45.0%
TGTGGGTATCTGAGGAAAGA+AGG + chr2.3:54400554-54400573 None:intergenic 45.0%
TGTTTCACGAGGGAAACCAA+TGG + chr2.3:54400406-54400425 None:intergenic 45.0%
! AAGGATTGTTCCAAGGGCAT+TGG - chr2.3:54401187-54401206 MS.gene52431:CDS 45.0%
! CTTTGAGAGCTGTTTCACGA+GGG + chr2.3:54400416-54400435 None:intergenic 45.0%
! TTCAGAAGCTGAAGCACCTT+TGG + chr2.3:54400610-54400629 None:intergenic 45.0%
!! GGAAACCAATGGTGTTGATG+AGG + chr2.3:54400395-54400414 None:intergenic 45.0%
!! GGTGTTGATGAGGTAAGAGA+CGG + chr2.3:54400385-54400404 None:intergenic 45.0%
GTATCTGAGGAAAGAAGGCG+TGG + chr2.3:54400549-54400568 None:intergenic 50.0%
!! GCTTTGAGAGCTGTTTCACG+AGG + chr2.3:54400417-54400436 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54400246 54401283 54400246 ID=MS.gene52431
chr2.3 mRNA 54400246 54401283 54400246 ID=MS.gene52431.t1;Parent=MS.gene52431
chr2.3 exon 54400246 54401283 54400246 ID=MS.gene52431.t1.exon1;Parent=MS.gene52431.t1
chr2.3 CDS 54400246 54401283 54400246 ID=cds.MS.gene52431.t1;Parent=MS.gene52431.t1
Gene Sequence

>MS.gene52431

ATGGCAATGCTTCGTTACATTATCTTCAATTACAATCATTACAGAGCAATTATTATCCCCCACAAATCATTATCAACCCCTCTTTTCCCATTCCAATTTTCCCACAATTTCACAACTTCCGAATCAGACTCATTCACCGTCTCTTACCTCATCAACACCATTGGTTTCCCTCGTGAAACAGCTCTCAAAGCTTCAAAACGACTTCGTTTCAACTCTCCACAAAAGCCCAATTCATTTTTCACTTTCTTCACAAACCTTGGTTTTTCAGATTCCAATATACGCAGCATTATCATAAAACAACCACGCCTTCTTTCCTCAGATACCCACAATTCAATTCTTCCGAAGTTTCAATTTTTTCTATCCAAAGGTGCTTCAGCTTCTGAAATCGCGTGTTTGTTAGCAGCGAATCCTAGAATTTTACAGAATAGTTTGGAGAATAGAATAATTCCTCTTTTTGAATTTTATAAGAGGTTTTTTAAATCTGATAAAGCTACAATTTGTTGCATCATTCGAAATTTGATATCTTTGCCTTACAATCTTACTACTGTTAATGTTAAGTTATTGATTGATTATGGAGTTTGTGATTCCGCTATTGCTAGATTGCTTTTGACAAGACCAGCTATACTTGGATCAATTGATTTCCTTAGTACTTTGGAGGAAGTTAAGGGTTTAGGGTTTGACCCTTCAACTTCAACTTTTGGGTCAGCTTTGGTTGCAAAGAAATGTATGACTAAAACACTTTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGTGCATTTAGAGGTCGTCCTGAATTGTTGTTGACTTCAATTGATAAGATTAATTTGGTGTTGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCTTTGGCACTTTCTAGAAGGCCACGTATTTTTAGTTACAGTTTGCAGAAAAGGATTGTTCCAAGGGCATTGGTTCTGCAATTTCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCTAGCTTAGTTCGAACCGTTTGCTCCGTCTAA
Protein sequence

>MS.gene52431.t1

MAMLRYIIFNYNHYRAIIIPHKSLSTPLFPFQFSHNFTTSESDSFTVSYLINTIGFPRETALKASKRLRFNSPQKPNSFFTFFTNLGFSDSNIRSIIIKQPRLLSSDTHNSILPKFQFFLSKGASASEIACLLAANPRILQNSLENRIIPLFEFYKRFFKSDKATICCIIRNLISLPYNLTTVNVKLLIDYGVCDSAIARLLLTRPAILGSIDFLSTLEEVKGLGFDPSTSTFGSALVAKKCMTKTLWDEKVDVFKKWGWSDEDVIRAFRGRPELLLTSIDKINLVLSFWVNQLGWNSLALSRRPRIFSYSLQKRIVPRALVLQFLVMKGLRKKNASLVRTVCSV