AlfalfaGEDB | MS.gene073434

M. sativa cultivar XinJiangDaYe / MS.gene073434

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073434.t1	XP_013463341.1	85.6	403	56	2	1	402	1	402	1.10E-163	586.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073434.t1	A0A072V6Y3	85.6	403	56	2	1	402	1	402	8.0e-164	586.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene073434.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050426	MS.gene073434	-0.808605	2.85E-50	-1.69E-46
MS.gene050670	MS.gene073434	0.835852	1.32E-56	-1.69E-46
MS.gene051525	MS.gene073434	0.816941	4.27E-52	-1.69E-46
MS.gene051582	MS.gene073434	0.828371	9.33E-55	-1.69E-46
MS.gene052128	MS.gene073434	-0.80586	1.09E-49	-1.69E-46
MS.gene052188	MS.gene073434	0.809092	2.24E-50	-1.69E-46
MS.gene052340	MS.gene073434	0.801848	7.42E-49	-1.69E-46
MS.gene05553	MS.gene073434	0.821744	3.43E-53	-1.69E-46
MS.gene055539	MS.gene073434	0.828995	6.59E-55	-1.69E-46
MS.gene05556	MS.gene073434	0.817753	2.80E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00326	MS.gene073434	PPI
MS.gene004543	MS.gene073434	PPI
MS.gene004585	MS.gene073434	PPI
MS.gene004590	MS.gene073434	PPI
MS.gene035324	MS.gene073434	PPI
MS.gene073373	MS.gene073434	PPI
MS.gene073434	MS.gene52433	PPI
MS.gene073434	MS.gene68900	PPI
MS.gene073434	MS.gene52395	PPI
MS.gene073434	MS.gene035324	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene073434.t1	MTR_2g437990	86.849	403	51	2	1	402	1	402	704
MS.gene073434.t1	MTR_2g076320	85.112	403	59	1	1	402	1	403	682
MS.gene073434.t1	MTR_2g438010	79.156	403	83	1	1	402	21	423	643
MS.gene073434.t1	MTR_2g437120	78.947	399	75	3	1	394	1	395	618
MS.gene073434.t1	MTR_2g437150	73.086	405	101	3	1	397	1	405	582
MS.gene073434.t1	MTR_2g437170	72.927	410	101	4	1	400	1	410	580
MS.gene073434.t1	MTR_2g437940	74.693	407	65	4	1	402	1	374	580
MS.gene073434.t1	MTR_2g437960	70.617	405	115	2	1	401	1	405	561
MS.gene073434.t1	MTR_2g437960	70.720	403	114	2	1	399	1	403	559
MS.gene073434.t1	MTR_2g437160	70.426	399	112	4	1	395	12	408	555

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073434.t1	AT5G07900	33.434	332	216	4	51	379	70	399	2.47e-55	188
MS.gene073434.t1	AT1G21150	30.130	385	253	6	5	377	4	384	8.72e-52	178
MS.gene073434.t1	AT1G21150	30.130	385	253	6	5	377	68	448	4.44e-51	178
MS.gene073434.t1	AT1G21150	31.098	328	221	3	53	377	23	348	1.72e-49	171
MS.gene073434.t1	AT1G61980	29.167	360	197	8	51	365	53	399	8.83e-36	136
MS.gene073434.t1	AT1G61980	29.167	360	197	8	51	365	53	399	8.83e-36	136
MS.gene073434.t1	AT1G61980	29.167	360	197	8	51	365	53	399	8.83e-36	136
MS.gene073434.t1	AT1G61990	29.248	359	203	7	51	370	53	399	3.96e-33	129
MS.gene073434.t1	AT1G61990	29.248	359	203	7	51	370	53	399	3.96e-33	129
MS.gene073434.t1	AT1G61970	27.451	357	207	8	51	365	53	399	6.30e-33	128

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Find 58 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTTTGTAAAATTTG+AGG	0.407296	2.4:+53792672	None:intergenic
AAACTATAAGAAAACATAAG+TGG	0.525922	2.4:+53792159	None:intergenic
AAATGATTTGATTAAGTCAT+TGG	0.342453	2.4:-53792439	MS.gene073434:CDS
AACTACTTTGTAAAATTTGA+GGG	0.411226	2.4:+53792673	None:intergenic
AACTGAATCAGGATTATCTG+GGG	0.669468	2.4:+53792866	None:intergenic
AAGAAGGTGATAACTGAATC+AGG	0.441680	2.4:+53792855	None:intergenic
AAGCTGTTATTCGAGTATTT+AGG	0.318007	2.4:-53792284	MS.gene073434:CDS
AATGAAACTTGCAAATACAA+CGG	0.655557	2.4:-53791959	MS.gene073434:CDS
AATGTATGAGTAAAATACTT+TGG	0.370949	2.4:-53792350	MS.gene073434:CDS
AATTGCAAAACTGAGGCTCT+TGG	0.425012	2.4:+53792120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTGTTATTCGAGTATTT+AGG	-	chr2.4:53792738-53792757	MS.gene073434:CDS	30.0%
ATAACTGAATCAGGATTATC+TGG	+	chr2.4:53792161-53792180	None:intergenic	30.0%
ATTGAAGTCAACATCAAACT+AGG	+	chr2.4:53792770-53792789	None:intergenic	30.0%
CAAAAGAAATTGCAAAACTG+AGG	+	chr2.4:53792912-53792931	None:intergenic	30.0%
CTATTCAGCAATTCAAAAAG+AGG	+	chr2.4:53792392-53792411	None:intergenic	30.0%
GAGACATAAAACAAGATTCT+GGG	+	chr2.4:53791943-53791962	None:intergenic	30.0%
TAACTGAATCAGGATTATCT+GGG	+	chr2.4:53792160-53792179	None:intergenic	30.0%
TCAATACATTACACATTTGG+TGG	+	chr2.4:53793107-53793126	None:intergenic	30.0%
TGAGACATAAAACAAGATTC+TGG	+	chr2.4:53791944-53791963	None:intergenic	30.0%
TGATTTGATTAAGTCATTGG+CGG	-	chr2.4:53792586-53792605	MS.gene073434:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	53791918	53793126	53791918	ID=MS.gene073434
chr2.4	mRNA	53791918	53793126	53791918	ID=MS.gene073434.t1;Parent=MS.gene073434
chr2.4	exon	53791918	53793126	53791918	ID=MS.gene073434.t1.exon1;Parent=MS.gene073434.t1
chr2.4	CDS	53791918	53793126	53791918	ID=cds.MS.gene073434.t1;Parent=MS.gene073434.t1

Gene Sequence

>MS.gene073434

ATGTCCAACAAATTGTTTTTCTCCCAGAATCTTGTTTTATGTCTCATCACAACAAAATCAACAACCTTAAAATTCAACAACCACTTGTCATTCCCATTTTCACTCAAATGCAGCATCACAACATCTCAATCAGAATCAATCACACAACCTTTTGCTGTATCCTACCTTATCAACAATTTTGGTTTTTCAACTGAATCAGCTCTCAAAGCTTTCAACAACAAGCAGGTTCGTTTCAATACCCCAGATAATCCTGATTCAGTTATCACCTTCTTTCAAAACCATGGTTTTTCACACGATAACATACGCATCATCATCACAAAAGCACCTTGGTTACTTTCTTCACAACCCCACAAAAGGTTGTTGCCAAAGTTTGAATATTTTTTATCCAAAGGTGCTTCTTCATCTGATATTGTTTCATTGTTAACTTCAAACCCTCAAATTTTACAAAGTAGTTTGGAGAAACGAATAATCCCTCTTTTTGAATTGCTGAATAGGTTTTCGAAAACCGACAAGGATACCATTGTTTGCTTAATTCGAAATTCAAGATCATTTACTGTTTATCCCCATCATGTTCTAGAGGCTAATATCAATTTGATGTCTGATTTTGGAGTTTCTGATTCTGCCATTGCTAGACTGCTTCTTAGAAGGCCATCTATATTTTGTTCAAATGATTTGATTAAGTCATTGGCGGAAGTTAAGTGTTTAGGGTTTGACCCTTCAACAACCGCTTTTCGGACTGCTTTGATAGCCAAGAAATGTATGAGTAAAATACTTTGGGATAAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGCTGTTATTCGAGTATTTAGGTGTCAGCCTAGTTTGATGTTGACTTCAATTGATAAGATTAATCTGGTGATGAATTTTTGGGTTAATCAAATGGGTTGGGATCCCTTGGAACTTACTAAATCTCCACTTATGTTTTCTTATAGTTTACCTAAAAGGATCATTCCAAGAGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGGAAAAAAAATGCGAGCTTAGGTAGACCATTTGCTTATTCTGAGAATATGTTCTTGAACAAGTGTGTTTTCAGCTTTAAGGAGGAGTCTGATTATCTGTTGAAGCTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGGGATGCCATCCACCAAATGTGTAATGTATTGA

Protein sequence

>MS.gene073434.t1

MSNKLFFSQNLVLCLITTKSTTLKFNNHLSFPFSLKCSITTSQSESITQPFAVSYLINNFGFSTESALKAFNNKQVRFNTPDNPDSVITFFQNHGFSHDNIRIIITKAPWLLSSQPHKRLLPKFEYFLSKGASSSDIVSLLTSNPQILQSSLEKRIIPLFELLNRFSKTDKDTIVCLIRNSRSFTVYPHHVLEANINLMSDFGVSDSAIARLLLRRPSIFCSNDLIKSLAEVKCLGFDPSTTAFRTALIAKKCMSKILWDKKVDVFKKWGWSDEAVIRVFRCQPSLMLTSIDKINLVMNFWVNQMGWDPLELTKSPLMFSYSLPKRIIPRASVLQFLLMKGLRKKNASLGRPFAYSENMFLNKCVFSFKEESDYLLKLYDEKMKLANTTENNGMPSTKCVMY