AlfalfaGEDB | MS.gene036497

M. sativa cultivar XinJiangDaYe / MS.gene036497

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036497.t1	XP_003609653.2	93.9	376	22	1	1	375	1	376	7.90E-196	693

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036497.t1	Q9C6A1	22.4	321	186	11	55	359	123	396	2.6e-06	54.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036497.t1	G7JKD0	93.9	376	22	1	1	375	1	376	5.7e-196	693.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene036497.t1	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene036497	MS.gene52433	PPI
MS.gene004585	MS.gene036497	PPI
MS.gene036497	MS.gene004589	PPI
MS.gene036497	MS.gene00282	PPI
MS.gene036497	MS.gene073378	PPI
MS.gene00326	MS.gene036497	PPI
MS.gene036497	MS.gene52392	PPI
MS.gene036497	MS.gene00383	PPI
MS.gene036497	MS.gene52434	PPI
MS.gene036497	MS.gene58655	PPI
MS.gene036497	MS.gene52432	PPI
MS.gene036497	MS.gene68901	PPI
MS.gene036497	MS.gene041550	PPI
MS.gene036497	MS.gene00324	PPI
MS.gene036497	MS.gene52427	PPI
MS.gene073373	MS.gene036497	PPI
MS.gene073371	MS.gene036497	PPI
MS.gene036497	MS.gene073371	PPI
MS.gene036497	MS.gene00284	PPI
MS.gene036497	MS.gene00286	PPI
MS.gene036497	MS.gene00327	PPI
MS.gene004543	MS.gene036497	PPI
MS.gene073434	MS.gene036497	PPI
MS.gene036497	MS.gene52431	PPI
MS.gene52395	MS.gene036497	PPI
MS.gene036497	MS.gene004581	PPI
MS.gene036497	MS.gene00321	PPI
MS.gene035324	MS.gene036497	PPI
MS.gene036497	MS.gene58656	PPI
MS.gene036497	MS.gene004583	PPI
MS.gene004590	MS.gene036497	PPI
MS.gene52432	MS.gene036497	PPI
MS.gene036497	MS.gene00381	PPI
MS.gene036497	MS.gene073372	PPI
MS.gene036497	MS.gene004588	PPI
MS.gene036497	MS.gene004545	PPI
MS.gene68900	MS.gene036497	PPI
MS.gene036497	MS.gene073433	PPI
MS.gene036497	MS.gene52426	PPI
MS.gene036497	MS.gene073379	PPI
MS.gene036497	MS.gene004587	PPI
MS.gene036497	MS.gene00385	PPI
MS.gene036497	MS.gene004540	PPI
MS.gene52433	MS.gene036497	PPI
MS.gene036497	MS.gene00322	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036497.t1	MTR_4g119580	93.883	376	22	1	1	375	1	376	0.0	690
MS.gene036497.t1	MTR_4g120380	70.027	377	100	3	1	370	1	371	0.0	521
MS.gene036497.t1	MTR_4g120380	70.225	356	93	3	1	349	1	350	8.77e-175	493
MS.gene036497.t1	MTR_4g119550	49.541	327	164	1	44	369	52	378	4.74e-111	330
MS.gene036497.t1	MTR_2g436460	48.795	332	169	1	38	368	42	373	5.50e-109	324
MS.gene036497.t1	MTR_2g437260	45.906	342	183	1	30	369	23	364	2.87e-107	320
MS.gene036497.t1	MTR_2g437040	46.903	339	176	2	33	369	32	368	7.69e-107	319
MS.gene036497.t1	MTR_2g437170	46.348	356	184	3	21	369	33	388	1.25e-103	311
MS.gene036497.t1	MTR_4g119570	61.905	252	63	1	120	371	13	231	1.36e-103	305
MS.gene036497.t1	MTR_2g437150	46.857	350	179	3	27	369	39	388	4.19e-103	310
MS.gene036497.t1	MTR_2g437080	44.086	372	201	4	1	369	1	368	2.82e-102	307
MS.gene036497.t1	MTR_2g437120	46.667	345	170	4	34	369	42	381	4.23e-102	308
MS.gene036497.t1	MTR_2g437960	47.273	330	169	3	45	369	55	384	2.42e-101	306
MS.gene036497.t1	MTR_2g437130	44.751	362	198	1	10	369	8	369	3.02e-101	305
MS.gene036497.t1	MTR_2g437020	47.384	344	172	5	31	369	29	368	4.02e-101	304
MS.gene036497.t1	MTR_2g437960	47.273	330	169	3	45	369	55	384	4.69e-101	306
MS.gene036497.t1	MTR_2g437100	48.795	332	163	3	45	369	62	393	4.75e-101	305
MS.gene036497.t1	MTR_2g437030	44.444	378	203	3	1	371	79	456	7.94e-101	306
MS.gene036497.t1	MTR_2g437200	43.733	375	173	2	33	369	22	396	4.23e-100	302
MS.gene036497.t1	MTR_2g436440	45.614	342	182	2	30	369	35	374	1.14e-98	298
MS.gene036497.t1	MTR_2g437160	46.313	339	178	2	35	369	55	393	1.20e-98	299
MS.gene036497.t1	MTR_2g436400	43.440	343	192	1	29	369	33	375	3.17e-98	297
MS.gene036497.t1	MTR_2g438010	45.161	341	182	2	34	369	61	401	2.99e-97	296
MS.gene036497.t1	MTR_2g437240	43.272	379	173	3	32	372	25	399	3.84e-97	295
MS.gene036497.t1	MTR_2g437060	43.675	332	185	1	40	369	52	383	2.32e-95	290
MS.gene036497.t1	MTR_2g437990	44.575	341	181	3	34	368	41	379	3.98e-94	288
MS.gene036497.t1	MTR_2g076320	43.314	344	182	3	34	368	41	380	1.59e-93	286
MS.gene036497.t1	MTR_2g437180	44.985	329	174	3	45	368	51	377	1.73e-91	280
MS.gene036497.t1	MTR_2g438020	42.700	363	170	2	45	369	73	435	3.16e-90	280
MS.gene036497.t1	MTR_2g437940	42.813	327	160	4	45	369	51	352	7.08e-85	262
MS.gene036497.t1	MTR_2g019810	42.042	333	179	4	44	369	32	357	3.33e-80	250
MS.gene036497.t1	MTR_2g019840	41.317	334	192	3	38	369	38	369	1.52e-78	246
MS.gene036497.t1	MTR_3g450500	33.243	367	229	5	22	373	9	374	1.06e-57	192
MS.gene036497.t1	MTR_4g007490	33.240	358	228	5	21	369	13	368	1.34e-55	187
MS.gene036497.t1	MTR_2g437090	53.947	152	70	0	218	369	5	156	3.67e-53	174
MS.gene036497.t1	MTR_2g437160	48.824	170	87	0	200	369	133	302	2.03e-50	172
MS.gene036497.t1	MTR_2g437160	47.126	87	44	1	35	119	55	141	4.75e-16	78.6
MS.gene036497.t1	MTR_8g080990	29.032	341	232	4	38	371	37	374	3.30e-38	141
MS.gene036497.t1	MTR_8g081000	27.485	342	244	3	38	375	50	391	7.70e-38	140
MS.gene036497.t1	MTR_8g081000	27.485	342	244	3	38	375	50	391	7.97e-38	140
MS.gene036497.t1	MTR_8g081000	27.515	338	241	3	38	371	50	387	1.27e-37	140
MS.gene036497.t1	MTR_2g436370	38.953	172	101	2	23	190	24	195	4.01e-31	117
MS.gene036497.t1	MTR_4g119615	94.000	50	3	0	313	362	26	75	5.80e-24	95.1
MS.gene036497.t1	MTR_3g085240	36.552	145	80	3	19	163	38	170	2.45e-16	78.6
MS.gene036497.t1	MTR_2g034600	26.909	275	177	7	80	340	215	479	6.46e-16	79.3
MS.gene036497.t1	MTR_2g034600	26.909	275	177	7	80	340	280	544	8.57e-16	79.3
MS.gene036497.t1	MTR_2g034600	26.909	275	177	7	80	340	276	540	9.41e-16	79.0
MS.gene036497.t1	MTR_3g092710	24.409	254	171	6	89	322	217	469	3.15e-14	74.3
MS.gene036497.t1	MTR_4g049400	36.842	114	68	2	33	142	38	151	2.85e-13	69.3
MS.gene036497.t1	MTR_8g012210	22.789	294	208	8	87	369	63	348	5.09e-13	70.1
MS.gene036497.t1	MTR_2g436380	33.628	113	68	3	216	328	3	108	3.57e-12	66.6
MS.gene036497.t1	MTR_2g019830	56.667	60	25	1	310	369	139	197	2.29e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036497.t1	AT5G07900	34.024	338	207	5	44	370	69	401	7.37e-62	204
MS.gene036497.t1	AT1G21150	31.212	330	219	4	44	366	56	384	1.29e-46	164
MS.gene036497.t1	AT1G21150	31.212	330	219	4	44	366	120	448	4.68e-46	164
MS.gene036497.t1	AT1G21150	30.030	333	225	4	41	366	17	348	7.62e-45	158
MS.gene036497.t1	AT1G61980	28.338	367	222	7	44	370	52	417	6.77e-43	154
MS.gene036497.t1	AT1G61980	28.338	367	222	7	44	370	52	417	6.77e-43	154
MS.gene036497.t1	AT1G61980	28.338	367	222	7	44	370	52	417	6.77e-43	154
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G61970	26.500	400	243	10	1	354	5	399	7.35e-37	138
MS.gene036497.t1	AT1G62120	27.297	370	226	8	44	371	56	424	3.03e-36	137
MS.gene036497.t1	AT1G61990	27.473	364	218	7	44	368	52	408	6.83e-34	130
MS.gene036497.t1	AT1G61990	27.473	364	218	7	44	368	52	408	6.83e-34	130
MS.gene036497.t1	AT1G61960	24.670	454	256	10	5	374	6	457	4.26e-31	123
MS.gene036497.t1	AT1G62150	25.255	392	217	8	44	360	58	448	6.05e-30	120
MS.gene036497.t1	AT5G64950	28.739	341	228	7	42	369	38	376	9.24e-30	118
MS.gene036497.t1	AT3G46950	30.196	255	170	5	33	283	38	288	6.41e-27	111
MS.gene036497.t1	AT1G62110	28.340	247	174	2	44	287	52	298	1.86e-25	107
MS.gene036497.t1	AT1G62110	32.000	100	64	1	259	354	340	439	6.31e-11	63.9
MS.gene036497.t1	AT1G62085	30.453	243	166	2	44	283	55	297	2.99e-25	107
MS.gene036497.t1	AT1G62085	30.453	243	166	2	44	283	55	297	2.99e-25	107
MS.gene036497.t1	AT1G62010	24.024	333	212	6	77	370	71	401	5.14e-25	105
MS.gene036497.t1	AT1G56380	24.658	365	225	9	42	360	25	385	4.46e-24	102
MS.gene036497.t1	AT1G56380	24.658	365	225	9	42	360	14	374	4.90e-24	102
MS.gene036497.t1	AT5G23930	28.369	282	189	7	39	314	50	324	5.89e-21	94.4
MS.gene036497.t1	AT4G14605	31.928	166	103	6	171	330	222	383	2.23e-12	68.6
MS.gene036497.t1	AT4G14605	31.928	166	103	6	171	330	222	383	2.23e-12	68.6
MS.gene036497.t1	AT1G79220	24.232	293	206	7	87	369	91	377	4.01e-11	64.3

Find 83 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGAGGAGATTAAGGAATT+AGG	0.197682	8.4:+12191900	MS.gene036497:CDS
TGAAGGAGGTAACTACATTT+TGG	0.211721	8.4:-12191288	None:intergenic
ATCAAGCAAGAATTTCAAAT+TGG	0.217026	8.4:-12191796	None:intergenic
GGAGGCTGTGGAGGAGATTA+AGG	0.222304	8.4:+12191893	MS.gene036497:CDS
AAATTGAAGCTTTGGCAAAA+TGG	0.249268	8.4:-12191580	None:intergenic
AACTCATCCTTCAAATAAAA+TGG	0.264656	8.4:-12192269	None:intergenic
TTGGCTATTAAAGTTATATC+AGG	0.283508	8.4:+12192334	MS.gene036497:CDS
TGGAGGAGATTAAGGAATTA+GGG	0.290150	8.4:+12191901	MS.gene036497:CDS
AACGATTCACATACCTTTGC+AGG	0.292723	8.4:-12192295	None:intergenic
TGTAGCATTGTTGGCCAAAA+AGG	0.301284	8.4:+12191950	MS.gene036497:CDS
TTGAAATTCTTGCTTGATAC+TGG	0.309108	8.4:+12191801	MS.gene036497:CDS
TCCTACCTCACTAACAATTT+CGG	0.319551	8.4:+12191390	MS.gene036497:CDS
ACGAAGGAAACGAGGGTTTC+TGG	0.321312	8.4:-12191649	None:intergenic
AAGTTGATGCCTTGAAGAAC+TGG	0.332328	8.4:+12192000	MS.gene036497:CDS
CTTTGGCAAAATGGATTTGA+TGG	0.343012	8.4:-12191571	None:intergenic
ATCCTTCTTCATCAAACCTT+TGG	0.363759	8.4:-12192231	None:intergenic
ACGGTGACGATTATGTCTTC+TGG	0.370365	8.4:-12191624	None:intergenic
GGTGCTGCCAGGAGCAATAA+AGG	0.392734	8.4:-12192140	None:intergenic
TTGGGATCCTTTATTGCTCC+TGG	0.395686	8.4:+12192133	MS.gene036497:CDS
CTTCTTACCAATTCAAAAGT+AGG	0.408654	8.4:-12191696	None:intergenic
TTGGATCCAACAACTTGGTT+GGG	0.412366	8.4:+12192115	MS.gene036497:CDS
TCAAGCAAGAATTTCAAATT+GGG	0.419573	8.4:-12191795	None:intergenic
TAACCTTATGCTACGGTCTT+CGG	0.426601	8.4:+12192067	MS.gene036497:CDS
AACCTTTGGAAAGAAGATAC+TGG	0.430985	8.4:-12192217	None:intergenic
GACGGGATCCCTGCGAATGA+TGG	0.437092	8.4:-12191532	None:intergenic
AAGGATCCCAACCAAGTTGT+TGG	0.437597	8.4:-12192121	None:intergenic
ATCAACTTTGGCATCCCATT+GGG	0.443217	8.4:-12191985	None:intergenic
GTTCTTCAAGGCATCAACTT+TGG	0.447538	8.4:-12191997	None:intergenic
TTCCAAAGGTTTGATGAAGA+AGG	0.448858	8.4:+12192229	MS.gene036497:CDS
GAAACGAGGGTTTCTGGTTA+CGG	0.455889	8.4:-12191643	None:intergenic
TGCGAATGATGGATTGTATC+TGG	0.473291	8.4:-12191521	None:intergenic
AGAATAACCCCAGTTCTTCA+AGG	0.473452	8.4:-12192009	None:intergenic
CGAAAAGCTCTGGTGCTGCC+AGG	0.473564	8.4:-12192151	None:intergenic
ATAACAGTATCGGGTTTCTC+CGG	0.477621	8.4:-12191465	None:intergenic
GGCTATCACTAAATCCCAAT+GGG	0.478420	8.4:+12191971	MS.gene036497:CDS
CATCAACTTTGGCATCCCAT+TGG	0.482441	8.4:-12191986	None:intergenic
TCGGACTTAGTATAGAGAAA+AGG	0.483597	8.4:+12192171	MS.gene036497:CDS
TGTCCGAAGACCGTAGCATA+AGG	0.485794	8.4:-12192070	None:intergenic
TTTGGATCCAACAACTTGGT+TGG	0.491206	8.4:+12192114	MS.gene036497:CDS
AGCGGTGTGGTTGCAGATGA+AGG	0.493188	8.4:-12191305	None:intergenic
TTTCATGCGACCATCACTAA+TGG	0.498728	8.4:-12191772	None:intergenic
TGAGAAGAGCTCTGAGACGG+TGG	0.502155	8.4:-12191260	None:intergenic
TTCTTACCAATTCAAAAGTA+GGG	0.509482	8.4:-12191695	None:intergenic
TGGCTATTAAAGTTATATCA+GGG	0.511825	8.4:+12192335	MS.gene036497:CDS
ATCCAGTATCTTCTTTCCAA+AGG	0.514435	8.4:+12192215	MS.gene036497:CDS
TTTGGCAAAATGGATTTGAT+GGG	0.517742	8.4:-12191570	None:intergenic
ATACTAAGTCCGAAAAGCTC+TGG	0.524827	8.4:-12192161	None:intergenic
GAAGACCGTAGCATAAGGTT+AGG	0.532188	8.4:-12192065	None:intergenic
TGGTTGATCTGAATCTGAAA+TGG	0.533288	8.4:-12191355	None:intergenic
CGACCATCACTAATGGTAGC+AGG	0.533792	8.4:-12191765	None:intergenic
TAGAGAAAAGGCTTAGTCCA+AGG	0.534773	8.4:+12192183	MS.gene036497:CDS
GATGGATTGTATCTGGTCAA+TGG	0.537796	8.4:-12191514	None:intergenic
AAGGTCTGCTTGTAAGCAAA+CGG	0.538087	8.4:-12191845	None:intergenic
TAGGGATAATATGTTTGTTG+AGG	0.540118	8.4:-12191677	None:intergenic
AGATACAATCCATCATTCGC+AGG	0.541336	8.4:+12191523	MS.gene036497:CDS
TACTGGATAACTGAAGCCCT+TGG	0.548630	8.4:-12192200	None:intergenic
AGTTGATGCCTTGAAGAACT+GGG	0.549779	8.4:+12192001	MS.gene036497:CDS
GCCGAAATTGTTAGTGAGGT+AGG	0.554634	8.4:-12191391	None:intergenic
TTTCCTGCTACCATTAGTGA+TGG	0.567385	8.4:+12191762	MS.gene036497:CDS
AGGCTATCACTAAATCCCAA+TGG	0.578405	8.4:+12191970	MS.gene036497:CDS
GGGTTTGAGACGAAAACGAC+GGG	0.584914	8.4:-12191549	None:intergenic
ACGACTTCGTTTCAATACTC+CGG	0.588524	8.4:+12191446	MS.gene036497:CDS
TCTGGTCAATGGAGAAACCA+TGG	0.599326	8.4:-12191503	None:intergenic
AGGATGAGTTGTTCCTGCAA+AGG	0.601687	8.4:+12192282	MS.gene036497:CDS
CTGGTCAATGGAGAAACCAT+GGG	0.604216	8.4:-12191502	None:intergenic
AGAGAAAAGGCTTAGTCCAA+GGG	0.604964	8.4:+12192184	MS.gene036497:CDS
GCTATTAAAGTTATATCAGG+GGG	0.615187	8.4:+12192337	MS.gene036497:CDS
TTGGCAAAATGGATTTGATG+GGG	0.615509	8.4:-12191569	None:intergenic
AGAGCAAGTTGTTGAGAGAG+CGG	0.616014	8.4:-12191323	None:intergenic
ATAAGCCGAAATTGTTAGTG+AGG	0.618337	8.4:-12191395	None:intergenic
GAGGGCCTAACCTTATGCTA+CGG	0.624819	8.4:+12192060	MS.gene036497:CDS
AGGTAGGAAACTGTGAAAGA+TGG	0.624924	8.4:-12191375	None:intergenic
GGCTATTAAAGTTATATCAG+GGG	0.627367	8.4:+12192336	MS.gene036497:CDS
AGTTGAGAAGAGCTCTGAGA+CGG	0.630444	8.4:-12191263	None:intergenic
AGGCTTACACGAAGGAAACG+AGG	0.635953	8.4:-12191657	None:intergenic
GTTTGTTGAGGCTTACACGA+AGG	0.642715	8.4:-12191665	None:intergenic
GGCTTACACGAAGGAAACGA+GGG	0.649598	8.4:-12191656	None:intergenic
GATACAATCCATCATTCGCA+GGG	0.650640	8.4:+12191524	MS.gene036497:CDS
GTTGATGCCTTGAAGAACTG+GGG	0.672967	8.4:+12192002	MS.gene036497:CDS
GGGGTTTGAGACGAAAACGA+CGG	0.698254	8.4:-12191550	None:intergenic
GGTGTGGTTGCAGATGAAGG+AGG	0.735727	8.4:-12191302	None:intergenic
TTGATCTGAATCTGAAATGG+CGG	0.739869	8.4:-12191352	None:intergenic
AAGTTGTTGAGAGAGCGGTG+TGG	0.791544	8.4:-12191318	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTTTTCATCTGTTTTGA+GGG	+	chr8.4:12191872-12191891	MS.gene036497:CDS	20.0%
!!!	ATTTTAACTGCATTTAAAAG+AGG	+	chr8.4:12192041-12192060	MS.gene036497:CDS	20.0%
!!!	TAATTTTTTCATCTGTTTTG+AGG	+	chr8.4:12191871-12191890	MS.gene036497:CDS	20.0%
!!!	TTTTAACTGCATTTAAAAGA+GGG	+	chr8.4:12192042-12192061	MS.gene036497:CDS	20.0%
!	AACTCATCCTTCAAATAAAA+TGG	-	chr8.4:12192272-12192291	None:intergenic	25.0%
!	ACACAAAAATTGTAACTAGA+AGG	-	chr8.4:12191933-12191952	None:intergenic	25.0%
!	ACAGATGAAAAAATTACAGA+AGG	-	chr8.4:12191867-12191886	None:intergenic	25.0%
!	ATCAAGCAAGAATTTCAAAT+TGG	-	chr8.4:12191799-12191818	None:intergenic	25.0%
!	TCAAGCAAGAATTTCAAATT+GGG	-	chr8.4:12191798-12191817	None:intergenic	25.0%
!	TGGCTATTAAAGTTATATCA+GGG	+	chr8.4:12192335-12192354	MS.gene036497:CDS	25.0%
!	TTCTTACCAATTCAAAAGTA+GGG	-	chr8.4:12191698-12191717	None:intergenic	25.0%
!	TTGGCTATTAAAGTTATATC+AGG	+	chr8.4:12192334-12192353	MS.gene036497:CDS	25.0%
!!!	ATCAATAGCTTTTTTATCAG+AGG	-	chr8.4:12191730-12191749	None:intergenic	25.0%
!!!	CTTCAATTTTTAGCTTCTAA+AGG	+	chr8.4:12191594-12191613	MS.gene036497:CDS	25.0%
!!!	TATTATCCCTACTTTTGAAT+TGG	+	chr8.4:12191689-12191708	MS.gene036497:CDS	25.0%
!!!	TCAATAGCTTTTTTATCAGA+GGG	-	chr8.4:12191729-12191748	None:intergenic	25.0%
	CTTCTTACCAATTCAAAAGT+AGG	-	chr8.4:12191699-12191718	None:intergenic	30.0%
	GAAGCTAAAAATTGAAGCTT+TGG	-	chr8.4:12191591-12191610	None:intergenic	30.0%
	GCTATTAAAGTTATATCAGG+GGG	+	chr8.4:12192337-12192356	MS.gene036497:CDS	30.0%
	GGCTATTAAAGTTATATCAG+GGG	+	chr8.4:12192336-12192355	MS.gene036497:CDS	30.0%
	TTGAAATTCTTGCTTGATAC+TGG	+	chr8.4:12191801-12191820	MS.gene036497:CDS	30.0%
!	AAATTGAAGCTTTGGCAAAA+TGG	-	chr8.4:12191583-12191602	None:intergenic	30.0%
!	CAATTTTTGTGTAGCATTGT+TGG	+	chr8.4:12191941-12191960	MS.gene036497:CDS	30.0%
!	TAGGGATAATATGTTTGTTG+AGG	-	chr8.4:12191680-12191699	None:intergenic	30.0%
!	TTTGGCAAAATGGATTTGAT+GGG	-	chr8.4:12191573-12191592	None:intergenic	30.0%
!!	AACTGCACCATTTTATTTGA+AGG	+	chr8.4:12192262-12192281	MS.gene036497:CDS	30.0%
	AAAAAGGCGATAACAGTATC+GGG	-	chr8.4:12191477-12191496	None:intergenic	35.0%
	ATAAGCCGAAATTGTTAGTG+AGG	-	chr8.4:12191398-12191417	None:intergenic	35.0%
	ATCCAGTATCTTCTTTCCAA+AGG	+	chr8.4:12192215-12192234	MS.gene036497:CDS	35.0%
	ATCCTTCTTCATCAAACCTT+TGG	-	chr8.4:12192234-12192253	None:intergenic	35.0%
	ATTAAAGTTATATCAGGGGG+AGG	+	chr8.4:12192340-12192359	MS.gene036497:CDS	35.0%
	GAAAAAGGCGATAACAGTAT+CGG	-	chr8.4:12191478-12191497	None:intergenic	35.0%
	TCCTACCTCACTAACAATTT+CGG	+	chr8.4:12191390-12191409	MS.gene036497:CDS	35.0%
	TCGGACTTAGTATAGAGAAA+AGG	+	chr8.4:12192171-12192190	MS.gene036497:CDS	35.0%
	TGGAGGAGATTAAGGAATTA+GGG	+	chr8.4:12191901-12191920	MS.gene036497:CDS	35.0%
	TGGTTGATCTGAATCTGAAA+TGG	-	chr8.4:12191358-12191377	None:intergenic	35.0%
	TTAAAGTTATATCAGGGGGA+GGG	+	chr8.4:12192341-12192360	MS.gene036497:CDS	35.0%
	TTCCAAAGGTTTGATGAAGA+AGG	+	chr8.4:12192229-12192248	MS.gene036497:CDS	35.0%
!	AACCTTTGGAAAGAAGATAC+TGG	-	chr8.4:12192220-12192239	None:intergenic	35.0%
!	AAGGTATGTGAATCGTTTTG+AGG	+	chr8.4:12192301-12192320	MS.gene036497:CDS	35.0%
!	CTTTGGCAAAATGGATTTGA+TGG	-	chr8.4:12191574-12191593	None:intergenic	35.0%
!	GAAGGAGGTAACTACATTTT+GGG	-	chr8.4:12191290-12191309	None:intergenic	35.0%
!	GGATTTAGTGATAGCCTTTT+TGG	-	chr8.4:12191967-12191986	None:intergenic	35.0%
!	TGAAGGAGGTAACTACATTT+TGG	-	chr8.4:12191291-12191310	None:intergenic	35.0%
!	TTGATCTGAATCTGAAATGG+CGG	-	chr8.4:12191355-12191374	None:intergenic	35.0%
!	TTGGCAAAATGGATTTGATG+GGG	-	chr8.4:12191572-12191591	None:intergenic	35.0%
!!!	GAAACCATGGGTTTTGAAAA+AGG	-	chr8.4:12191493-12191512	None:intergenic	35.0%
!!!	TTTTTCATCTGTTTTGAGGG+AGG	+	chr8.4:12191875-12191894	MS.gene036497:CDS	35.0%
	AACGATTCACATACCTTTGC+AGG	-	chr8.4:12192298-12192317	None:intergenic	40.0%
	AAGGTCTGCTTGTAAGCAAA+CGG	-	chr8.4:12191848-12191867	None:intergenic	40.0%
	ACGACTTCGTTTCAATACTC+CGG	+	chr8.4:12191446-12191465	MS.gene036497:CDS	40.0%
	AGAATAACCCCAGTTCTTCA+AGG	-	chr8.4:12192012-12192031	None:intergenic	40.0%
	AGAGAAAAGGCTTAGTCCAA+GGG	+	chr8.4:12192184-12192203	MS.gene036497:CDS	40.0%
	AGATACAATCCATCATTCGC+AGG	+	chr8.4:12191523-12191542	MS.gene036497:CDS	40.0%
	AGGCTATCACTAAATCCCAA+TGG	+	chr8.4:12191970-12191989	MS.gene036497:CDS	40.0%
	AGGTAGGAAACTGTGAAAGA+TGG	-	chr8.4:12191378-12191397	None:intergenic	40.0%
	ATACTAAGTCCGAAAAGCTC+TGG	-	chr8.4:12192164-12192183	None:intergenic	40.0%
	ATCAACTTTGGCATCCCATT+GGG	-	chr8.4:12191988-12192007	None:intergenic	40.0%
	GATACAATCCATCATTCGCA+GGG	+	chr8.4:12191524-12191543	MS.gene036497:CDS	40.0%
	GGCTATCACTAAATCCCAAT+GGG	+	chr8.4:12191971-12191990	MS.gene036497:CDS	40.0%
	GTGGAGGAGATTAAGGAATT+AGG	+	chr8.4:12191900-12191919	MS.gene036497:CDS	40.0%
	TAACCTTATGCTACGGTCTT+CGG	+	chr8.4:12192067-12192086	MS.gene036497:CDS	40.0%
	TAGAGAAAAGGCTTAGTCCA+AGG	+	chr8.4:12192183-12192202	MS.gene036497:CDS	40.0%
	TGTAGCATTGTTGGCCAAAA+AGG	+	chr8.4:12191950-12191969	MS.gene036497:CDS	40.0%
	TTGGATCCAACAACTTGGTT+GGG	+	chr8.4:12192115-12192134	MS.gene036497:CDS	40.0%
	TTTCATGCGACCATCACTAA+TGG	-	chr8.4:12191775-12191794	None:intergenic	40.0%
	TTTCCTGCTACCATTAGTGA+TGG	+	chr8.4:12191762-12191781	MS.gene036497:CDS	40.0%
	TTTGGATCCAACAACTTGGT+TGG	+	chr8.4:12192114-12192133	MS.gene036497:CDS	40.0%
!	AGTTGATGCCTTGAAGAACT+GGG	+	chr8.4:12192001-12192020	MS.gene036497:CDS	40.0%
!	ATAACAGTATCGGGTTTCTC+CGG	-	chr8.4:12191468-12191487	None:intergenic	40.0%
!	GTTCTTCAAGGCATCAACTT+TGG	-	chr8.4:12192000-12192019	None:intergenic	40.0%
!	TCAATGCAGTGATGCGTTTT+TGG	+	chr8.4:12192096-12192115	MS.gene036497:CDS	40.0%
!!	AAGTTGATGCCTTGAAGAAC+TGG	+	chr8.4:12192000-12192019	MS.gene036497:CDS	40.0%
!!	CGTTTTTGGATCCAACAACT+TGG	+	chr8.4:12192110-12192129	MS.gene036497:CDS	40.0%
!!	GATGGATTGTATCTGGTCAA+TGG	-	chr8.4:12191517-12191536	None:intergenic	40.0%
!!	TGCGAATGATGGATTGTATC+TGG	-	chr8.4:12191524-12191543	None:intergenic	40.0%
!!!	ATCGCCTTTTTCAAAACCCA+TGG	+	chr8.4:12191486-12191505	MS.gene036497:CDS	40.0%
!!!	GTATGTGAATCGTTTTGAGG+AGG	+	chr8.4:12192304-12192323	MS.gene036497:CDS	40.0%
	AAGGATCCCAACCAAGTTGT+TGG	-	chr8.4:12192124-12192143	None:intergenic	45.0%
	ACGGTGACGATTATGTCTTC+TGG	-	chr8.4:12191627-12191646	None:intergenic	45.0%
	AGAGCAAGTTGTTGAGAGAG+CGG	-	chr8.4:12191326-12191345	None:intergenic	45.0%
	AGGATGAGTTGTTCCTGCAA+AGG	+	chr8.4:12192282-12192301	MS.gene036497:CDS	45.0%
	CATCAACTTTGGCATCCCAT+TGG	-	chr8.4:12191989-12192008	None:intergenic	45.0%
	CTGGTCAATGGAGAAACCAT+GGG	-	chr8.4:12191505-12191524	None:intergenic	45.0%
	GAAGACCGTAGCATAAGGTT+AGG	-	chr8.4:12192068-12192087	None:intergenic	45.0%
	GCCGAAATTGTTAGTGAGGT+AGG	-	chr8.4:12191394-12191413	None:intergenic	45.0%
	GTTGATGCCTTGAAGAACTG+GGG	+	chr8.4:12192002-12192021	MS.gene036497:CDS	45.0%
	TACTGGATAACTGAAGCCCT+TGG	-	chr8.4:12192203-12192222	None:intergenic	45.0%
	TCTGGTCAATGGAGAAACCA+TGG	-	chr8.4:12191506-12191525	None:intergenic	45.0%
	TTGGGATCCTTTATTGCTCC+TGG	+	chr8.4:12192133-12192152	MS.gene036497:CDS	45.0%
!	GTTTGTTGAGGCTTACACGA+AGG	-	chr8.4:12191668-12191687	None:intergenic	45.0%
!!	AGTTGAGAAGAGCTCTGAGA+CGG	-	chr8.4:12191266-12191285	None:intergenic	45.0%
!!	GAAACGAGGGTTTCTGGTTA+CGG	-	chr8.4:12191646-12191665	None:intergenic	45.0%
!!!	GTTTTGAGGAGGAAGCATCT+TGG	+	chr8.4:12192315-12192334	MS.gene036497:CDS	45.0%
	AAGTTGTTGAGAGAGCGGTG+TGG	-	chr8.4:12191321-12191340	None:intergenic	50.0%
	ACGAAGGAAACGAGGGTTTC+TGG	-	chr8.4:12191652-12191671	None:intergenic	50.0%
	AGGCTTACACGAAGGAAACG+AGG	-	chr8.4:12191660-12191679	None:intergenic	50.0%
	CGACCATCACTAATGGTAGC+AGG	-	chr8.4:12191768-12191787	None:intergenic	50.0%
	GAGGGCCTAACCTTATGCTA+CGG	+	chr8.4:12192060-12192079	MS.gene036497:CDS	50.0%
	GGCTTACACGAAGGAAACGA+GGG	-	chr8.4:12191659-12191678	None:intergenic	50.0%
	TGTCCGAAGACCGTAGCATA+AGG	-	chr8.4:12192073-12192092	None:intergenic	50.0%
!	GGGGTTTGAGACGAAAACGA+CGG	-	chr8.4:12191553-12191572	None:intergenic	50.0%
!	GGGTTTGAGACGAAAACGAC+GGG	-	chr8.4:12191552-12191571	None:intergenic	50.0%
!!!	ATCTGTTTTGAGGGAGGCTG+TGG	+	chr8.4:12191881-12191900	MS.gene036497:CDS	50.0%
	AGCGGTGTGGTTGCAGATGA+AGG	-	chr8.4:12191308-12191327	None:intergenic	55.0%
	GGAGGCTGTGGAGGAGATTA+AGG	+	chr8.4:12191893-12191912	MS.gene036497:CDS	55.0%
	GGTGTGGTTGCAGATGAAGG+AGG	-	chr8.4:12191305-12191324	None:intergenic	55.0%
!	CTGGCAGCACCAGAGCTTTT+CGG	+	chr8.4:12192152-12192171	MS.gene036497:CDS	55.0%
!	GGTGCTGCCAGGAGCAATAA+AGG	-	chr8.4:12192143-12192162	None:intergenic	55.0%
!!	TGAGAAGAGCTCTGAGACGG+TGG	-	chr8.4:12191263-12191282	None:intergenic	55.0%
!!!	TGTTTTGAGGGAGGCTGTGG+AGG	+	chr8.4:12191884-12191903	MS.gene036497:CDS	55.0%
	GACGGGATCCCTGCGAATGA+TGG	-	chr8.4:12191535-12191554	None:intergenic	60.0%
!!	CGAAAAGCTCTGGTGCTGCC+AGG	-	chr8.4:12192154-12192173	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	12191249	12192379	12191249	ID=MS.gene036497
chr8.4	mRNA	12191249	12192379	12191249	ID=MS.gene036497.t1;Parent=MS.gene036497
chr8.4	exon	12191249	12192379	12191249	ID=MS.gene036497.t1.exon1;Parent=MS.gene036497.t1
chr8.4	CDS	12191249	12192379	12191249	ID=cds.MS.gene036497.t1;Parent=MS.gene036497.t1

Gene Sequence

>MS.gene036497

ATGATTCACTGCCACCGTCTCAGAGCTCTTCTCAACTTCCCAAAATGTAGTTACCTCCTTCATCTGCAACCACACCGCTCTCTCAACAACTTGCTCTTCTCTACCGCCATTTCAGATTCAGATCAACCATCTTTCACAGTTTCCTACCTCACTAACAATTTCGGCTTATCTTCACAAGATGCTCTCAAAGCGTCTAAACGACTTCGTTTCAATACTCCGGAGAAACCCGATACTGTTATCGCCTTTTTCAAAACCCATGGTTTCTCCATTGACCAGATACAATCCATCATTCGCAGGGATCCCGTCGTTTTCGTCTCAAACCCCATCAAATCCATTTTGCCAAAGCTTCAATTTTTAGCTTCTAAAGGCGTTTCTCCAGAAGACATAATCGTCACCGTAACCAGAAACCCTCGTTTCCTTCGTGTAAGCCTCAACAAACATATTATCCCTACTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATAAAAAAGCTATTGATTGTGTAATTGCATTTCCTGCTACCATTAGTGATGGTCGCATGAAACCCAATTTGAAATTCTTGCTTGATACTGGTGTCACTCGTTCAAGTATTTACCGTTTGCTTACAAGCAGACCTTCTGTAATTTTTTCATCTGTTTTGAGGGAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTCTAGTTACAATTTTTGTGTAGCATTGTTGGCCAAAAAGGCTATCACTAAATCCCAATGGGATGCCAAAGTTGATGCCTTGAAGAACTGGGGTTATTCTGAAGATGCAATTTTAACTGCATTTAAAAGAGGGCCTAACCTTATGCTACGGTCTTCGGACAAACTCAATGCAGTGATGCGTTTTTGGATCCAACAACTTGGTTGGGATCCTTTATTGCTCCTGGCAGCACCAGAGCTTTTCGGACTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAGTTATCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAACTGCACCATTTTATTTGAAGGATGAGTTGTTCCTGCAAAGGTATGTGAATCGTTTTGAGGAGGAAGCATCTTGGCTATTAAAGTTATATCAGGGGGAGGGTGCTCGCATTCGCTGA

Protein sequence

>MS.gene036497.t1

MIHCHRLRALLNFPKCSYLLHLQPHRSLNNLLFSTAISDSDQPSFTVSYLTNNFGLSSQDALKASKRLRFNTPEKPDTVIAFFKTHGFSIDQIQSIIRRDPVVFVSNPIKSILPKLQFLASKGVSPEDIIVTVTRNPRFLRVSLNKHIIPTFELVRSFCPSDKKAIDCVIAFPATISDGRMKPNLKFLLDTGVTRSSIYRLLTSRPSVIFSSVLREAVEEIKELGFHPSSYNFCVALLAKKAITKSQWDAKVDALKNWGYSEDAILTAFKRGPNLMLRSSDKLNAVMRFWIQQLGWDPLLLLAAPELFGLSIEKRLSPRASVIQYLLSKGLMKKDASLTAPFYLKDELFLQRYVNRFEEEASWLLKLYQGEGARIR